Vegetation exerts a greater control on litter decomposition than climate warming in peatlands

Seasonal variations in soil microbial community co-occurrence network complexity respond differently to field-simulated warming experiments in a northern subtropical forest

Global warming may reshape seasonal changes in microbial community diversity and co-occurrence network patterns, with significant implications for terrestrial ecosystem function. We conducted a 2-year in situ field simulation of the effects of warming on the seasonal dynamics of soil microbial communities in a northern subtropical Quercus acutissima forest. Our study revealed that warming had no significant effect on the richness or diversity of soil bacteria or fungi in the growing season, whereas different warming gradients had different effects on their diversity in the nongrowing season. Warming also changed the microbial community structure, increasing the abundance of some thermophilic microbial species and decreasing the abundance of some symbiotrophic microorganisms. The co-occurrence network analysis of the microbial community showed that warming decreased the complexity of the intradomain network in the soil bacterial community in the growing and nongrowing seasons but increased it in the fungal community. Moreover, increasing warming temperatures increased the complexity of the interdomain network between bacteria and fungi in the growing season but decreased it in the nongrowing season, and the keystone species in the interdomain network changed with warming. Warming also reduced the proportion of positive microbial community interactions, indicating that warming reduced the mutualism, commensalism, and neutralism of microorganisms as they adapted to soil environmental stress. The factors affecting the fungal community varied considerably across warming gradients, with the bacterial community being significantly affected by soil temperature, MBC, NO3--N and NH4+-N, moreover, SOC and TN significantly affected fungal communities in the 4 °C warming treatment. These results suggest that warming increases seasonal differences in the diversity and complexity of soil microbial communities in the northern subtropical region, significantly influencing soil dynamic processes regulating forest ecosystems under global warming.

Plant roots but not hydrology control microbiome composition and methane flux in temperate fen mesocosms

The rewetting of formerly drained peatlands can help to counteract climate change through the reduction of CO2 emissions. However, this can lead to resuming CH4 emissions due to changes in the microbiome, favoring CH4-producing archaea. How plants, hydrology and microbiomes interact as ultimate determinants of CH4 dynamics is still poorly understood. Using a mesocosm approach, we studied peat microbiomes, below-ground root biomass and CH4 fluxes with three different water level regimes (stable high, stable low and fluctuating) and four different plant communities (bare peat, Carex rostrata, Juncus inflexus and their mixture) over the course of one growing season. A significant difference in microbiome composition was found between mesocosms with and without plants, while the difference between plant species identity or water regimes was rather weak. A significant difference was also found between the upper and lower peat, with the difference increasing as plants grew. By the end of the growing season, the methanogen relative abundance was higher in the sub-soil layer, as well as in the bare peat and C. rostrata pots, as compared to J. inflexus or mixture pots. This was inversely linked to the larger root area of J. inflexus. The root area also negatively correlated with CH4 fluxes which positively correlated with the relative abundance of methanogens. Despite the absence or low abundance of methanotrophs in many samples, the integration of methanotroph abundance improved the quality of the correlation with CH4 fluxes, and methanogens and methanotrophs together determined CH4 fluxes in a structural equation model. However, water regime showed no significant impact on plant roots and methanogens, and consequently, on CH4 fluxes. This study showed that plant roots determined the microbiome composition and, in particular, the relative abundance of methanogens and methanotrophs, which, in interaction, drove the CH4 fluxes.

Cessation of grazing causes biodiversity loss and homogenization of soil food webs

There is widespread concern that cessation of grazing in historically grazed ecosystems is causing biotic homogenization and biodiversity loss. We used 12 montane grassland sites along an 800 km north-south gradient across the UK, to test whether cessation of grazing affects local α- and β-diversity of below-ground food webs. We show cessation of grazing leads to strongly decreased α-diversity of most groups of soil microbes and fauna, particularly of relatively rare taxa. By contrast, the β-diversity varied between groups of soil organisms. While most soil microbial communities exhibited increased homogenization after cessation of grazing, we observed decreased homogenization for soil fauna after cessation of grazing. Overall, our results indicate that exclusion of domesticated herbivores from historically grazed montane grasslands has far-ranging negative consequences for diversity of below-ground food webs. This underscores the importance of grazers for maintaining the diversity of below-ground communities, which play a central role in ecosystem functioning.

Linkages between Sphagnum metabolites and peatland CO2 uptake are sensitive to seasonality in warming trends

Plants produce a wide diversity of metabolites. Yet, our understanding of how shifts in plant metabolites as a response to climate change feedback on ecosystem processes remains scarce. Here, we test to what extent climate warming shifts the seasonality of metabolites produced by Sphagnum mosses, and what are the consequences of these shifts for peatland C uptake. We used a reciprocal transplant experiment along a climate gradient in Europe to simulate climate change. We evaluated the responses of primary and secondary metabolites in five Sphagnum species and related their responses to gross ecosystem productivity (GEP). When transplanted to a warmer climate, Sphagnum species showed consistent responses to warming, with an upregulation of either their primary or secondary metabolite according to seasons. Moreover, these shifts were correlated to changes in GEP, especially in spring and autumn. Our results indicate that the Sphagnum metabolome is very plastic and sensitive to warming. We also show that warming-induced changes in the seasonality of Sphagnum metabolites have consequences on peatland GEP. Our findings demonstrate the capacity for plant metabolic plasticity to impact ecosystem C processes and reveal a further mechanism through which Sphagnum could shape peatland responses to climate change.

Cross-scale regulation of seasonal microclimate by vegetation and snow in the Arctic tundra

Climate warming is inducing widespread vegetation changes in Arctic tundra ecosystems, with the potential to alter carbon and nutrient dynamics between vegetation and soils. Yet, we lack a detailed understanding of how variation in vegetation and topography influences fine-scale temperatures ("microclimate") that mediate these dynamics, and at what resolution vegetation needs to be sampled to capture these effects. We monitored microclimate at 90 plots across a tundra landscape in western Greenland. Our stratified random study design covered gradients of topography and vegetation, while nested plots (0.8-100 m2 ) enabled comparison across different sampling resolutions. We used Bayesian mixed-effect models to quantify the direct influence of plot-level topography, moisture and vegetation on soil, near-surface and canopy-level temperatures (-6, 2, and 15 cm). During the growing season, colder soils were predicted by shrub cover (-0.24°C per 10% increase), bryophyte cover (-0.35°C per 10% increase), and vegetation height (-0.17°C per 1 cm increase). The same three factors also predicted the magnitude of differences between soil and above-ground temperatures, indicating warmer soils at low cover/height, but colder soils under closed/taller canopies. These findings were consistent across plot sizes, suggesting that spatial predictions of microclimate may be possible at the operational scales of satellite products. During winter, snow cover (+0.75°C per 10 snow-covered days) was the key predictor of soil microclimate. Topography and moisture explained little variation in the measured temperatures. Our results not only underline the close connection of vegetation and snow with microclimate in the Arctic tundra but also point to the need for more studies disentangling their complex interplay across tundra environments and seasons. Future shifts in vegetation cover and height will likely mediate the impact of atmospheric warming on the tundra soil environment, with potential implications for below-ground organisms and ecosystem functioning.

Alder encroachment alters subsoil organic carbon pool and chemical structure in a boreal peatland of Northeast China

Boreal peatlands have been experiencing increased abundances of symbiotic dinitrogen-fixing woody plants (mainly alder species). However, how alder encroachment alters soil organic carbon (C) pool and stability is unclear. To examine the effects of alder encroachment on soil organic C, we measured soil organic C pool, phenol oxidase (POX) activity, organic C mineralization rate, and organic C chemical structure (alkyl C, O-alkyl C, aromatic C, and carbonyl C) using solid-state ¹³C nuclear magnetic resonance spectroscopy in the 0-10 cm, 10-20 cm, and 20-40 cm depths in the Alnus sibirica islands and adjacent open peatlands in the north of Da'xingan Mountain, Northeast China. A. sibirica islands had 28 %, 25 %, and 30 % greater POX activity and 36 %, 31 %, and 100 % higher organic C mineralization than open peatlands in the 0-10 cm, 10-20 cm, and 20-40 cm soil depths, respectively. Despite no significant changes in the 0-10 cm and 10-20 cm depths, alder encroachment reduced soil organic C pool in the 20-40 cm depth. Soil organic C pool in the 0-40 cm depth was lower in A. sibirica islands (298 Mg ha^-1) than in the open peatlands (315 Mg ha^-1). Moreover, alder encroachment increased alkyl (7 %) and carbonyl (57 %) C fractions but reduced O-alkyl C fraction (16 %) in the 20-40 cm depth, resulting in increased aliphaticity and recalcitrance indices. These findings suggest that alder encroachment will reduce soil organic C accumulation by accelerating microbial decomposition, and highlight that increased biochemical stabilization would attenuate soil organic C loss after alder expansion in boreal peatlands. Our results will help assess and project future C budgets in boreal peatlands.

Effects of mycorrhiza and hyphae on the response of soil microbial community to warming in eastern Tibetan Plateau

The effects of mycorrhiza and its external hyphae on the response of soil microbes to global warming remain unclear. This study investigates the role of mycorrhiza and its hyphae in regulating soil microbial community under warming by examining the microbial biomass and composition in the ingrowth cores of arbuscular mycorrhiza (AM) plant, Fargesia nitida, and ectomycorrhiza (ECM) plant, Picea asperata, with/without mycorrhiza/hyphae and experimental warming. The results showed that warming significantly increased the biomass of all soil microbes (by 19.89%-137.48%) and altered the microbial composition in both plant plots without mycorrhiza/hyphae. However, this effect was weakened in the presence of mycorrhiza or hyphae. In F. nitida plots, warming did not significantly affect biomass and composition of most soil microbial groups when mycorrhiza or hyphae were present. In P. asperata plots, warming significantly increased the total and ECM fungi (ECMF) biomass in the presence of hyphae (p < 0.05) and the total, Gn, and AM fungi (AMF) biomass in the presence of mycorrhiza (p < 0.05). Meanwhile, the response of enzyme activities to warming was also altered with mycorrhiza or hyphae. Additionally, soil microbial community composition was mainly influenced by soil available phosphorus (avaP), while enzyme activities depended on soil avaP, dissolved organic carbon (DOC), and nitrate concentrations. Our results indicate that mycorrhiza and its hyphae are essential in regulating the response of microbes to warming.

Burning alters the decomposition of residual plant litters in Calamagrostis angustifolia wetlands in the Sanjiang Plain (Northeast China)

Wetlands store &gt;30% of the global soil carbon pool, which is important for global carbon cycling. However, with global warming and the increase in regional human activities, an increasing number of wetlands are being threatened by fires, which have serious effects on carbon cycling in wetlands. Although plant litter decomposition is one of the key stages of carbon cycling in wetlands, it is still unclear whether fires affect residual plant litter decomposition in burnt wetlands and whether the fire season also causes different effects. To address these knowledge gaps, a plant litter decomposition experiment was conducted during the growing season in autumn burnt, spring burnt, and unburnt sites in a Calamagrostis angustifolia wetland in the Sanjiang Plain (Northeast China). The results show that autumn burning promotes more mass loss (i.e., 15.9 ± 1.6% in autumn burnt sites and 14.8 ± 1.7% in autumn unburnt sites) and accelerates the decomposition of plant litter, whereas spring burning decreases the decomposition rates of plant litter (i.e., 15.7 ± 1.7% in spring burnt sites and 22.0 ± 2.5% in spring unburnt sites). As the decomposition time increased, the accumulation index indicated that carbon was released from plant litter to the surrounding environment accompanied by mass loss and nutrient elements accumulated in the residual plant litter. The N/P ratio of plant litter decreased from ca. 20 on day 26th to ca. 9 on day 121st, indicating that N acts as the limiting element for plant litter decomposition in C. angustifolia wetlands, and the limitation increased with increasing decomposition time. Our results also suggest that the autumn burning may promote more carbon loss and nutrient elements accumulated in plant litter in C. angustifolia wetlands than the spring burning.

The ecosystem impacts of dominant species exclusion in a prairie restoration

Dominant species often have disproportionately high abundance in restored communities compared to native remnants, which potentially could reduce the conservation value of restorations. Research is needed to determine how the abundance of dominant species in restoration plantings affects community assembly, species diversity, and ecosystem function. Most studies of dominant species in grasslands were modeled after experiments on keystone species, using the short-term experimental removal of dominants to test their functional role in ecosystems. However, the removal of established dominants constitutes a major disturbance that may influence the interpretation of their long-term functional impact. To address this, we experimentally assembled high-diversity tallgrass prairie communities that included or excluded the predicted dominant species (Andropogon gerardii and Sorghastrum nutans) from the seed mix at the time of planting, but without further manipulation of community composition. From 2013 to 2019, we measured several ecosystem functions and community dynamics in the presence or absence of dominants. Communities that included the dominant species had lower species richness, greater aboveground biomass, and reduced light availability at the soil surface. Dominant species presence also increased soil nutrient availability and rates of litter decomposition, although dominant grass litter decomposed more slowly than litter from other common species in both treatments. In the absence of the dominant grasses, communities were instead dominated by a common unplanted forb, Solidago altissima, and there was partial compensation in ecosystem functioning in these forb-dominated communities. The effects of dominant species exclusion may only be apparent in long-term studies of experimentally assembled communities that avoid the legacy effects associated with removal experiments. Furthermore, our results suggest that prairie restorations that limit or exclude the dominant grasses in seed mixes may achieve higher species diversity, increasing the conservation value of these systems.

Does Shift in Vegetation Abundance After Nitrogen and Phosphorus Additions Play a Key Role in Regulating Fungal Community Structure in a Northern Peatland?

Soil fungal communities are key players in biogeochemical processes of peatlands, which are important carbon stocks globally. Although it has been elucidated that fungi are susceptible to environmental changes, little is known about the intricate and interactive effect of long-term nitrogen (N) and phosphorus (P) enrichment on fungal community structure in northern peatlands. In this study, we compared a short- (2 years) with a long-term (10 years) fertilization experiment in a peatland complex in northeastern China to assess how N and/or P additions influence fungal community structure. The results showed that fungal community composition and diversity were altered by N addition, without a significant interactive effect with P addition. Not only the long-term but also the short-term nutrient addition could change the abundance of different plant functional types. However, there were no strong cascading effects on the fungal community in any of the fertilization experiments. Long-term nutrient addition showed a stronger effect on the relative abundance of different fungal functional guilds; an increase in the relative abundance of saprotrophs after fertilization did not jeopardize mycorrhizal fungi. Moreover, the decline in Sphagnum cover after long-term N addition did not parallel changes in the relative abundance of Sphagnum-associated fungi (Clavaria sphagnicola, Galerina tibiicystis, G. sphagnicola, and G. paludosa). Given that short- and long-term fertilization showed strongly contrasting effects on fungal community structure, our study highlights the necessity of assessing the long-term effects of nutrient enrichment on the association between vegetation and fungal community in peatland ecosystems. Future research priorities should emphasize the connection between the community structure of fungal functional guilds and their functionality, which is of paramount importance to better understand their influences on C storage in the face of uncertain N and P deposition regimes.

Disturbance alters relationships between soil carbon pools and aboveground vegetation attributes in an anthropogenic peatland in Patagonia

Anthropogenic-based disturbances may alter peatland soil-plant causal associations and their ability to sequester carbon. Likewise, it is unclear how the vegetation attributes are linked with different soil C decomposition-based pools (i.e., live moss, debris, and poorly- to highly-decomposed peat) under grassing and harvesting conditions. Therefore, we aimed to assess the relationships between aboveground vegetation attributes and belowground C pools in a Northern Patagonian peatland of Sphagnum magellanicum with disturbed and undisturbed areas. We used ordination to depict the main C pool and floristic gradients and structural equation modeling (SEM) to explore the direct and indirect relationships among these variables. In addition, we evaluated whether attributes derived from plant functional types (PFTs) are better suited to predict soil C pools than attributes derived from species gradients. We found that the floristic composition of the peatland can be classified into three categories that follow the C pool gradient. These categories correspond to (1) woody species, such as Baccharis patagonica, (2) water-logged species like Juncus procerus, and (3) grasslands. We depicted that these classes are reliable indicators of soil C decomposition stages. However, the relationships change between management. We found a clear statistical trend showing a decrease of live moss, debris, and poorly-decomposed C pools in the disturbed area. We also depicted that plant diversity, plant height, and PFT composition were reliable indicators of C decomposition only under undisturbed conditions, while the species-based attributes consistently yielded better overall results predicting soil C pools than PFT-based attributes. Our results imply that managed peatlands of Northern Patagonia with active grassing and harvesting activities, even if small-scaled, will significantly alter their future C sequestration capacities by decreasing their live and poorly-decomposed components. Finally, aboveground vegetation attributes cannot be used as proxies of soil C decomposition in disturbed peatlands as they no longer relate to decomposition stages.

Do plant-soil interactions influence how the microbial community responds to environmental change?

Global change alters ecosystems and their functioning, and biotic interactions can either buffer or amplify such changes. We utilized a long-term nitrogen (N) addition and species removal experiment in the Front Range of Colorado, USA to determine whether a codominant forb and a codominant grass, with different effects on nutrient cycling and plant community structure, would buffer or amplify the effects of simulated N deposition on soil bacterial and fungal communities. While the plant community was strongly shaped by both the presence of dominant species and N addition, we did not find a mediating effect of the plant community on soil microbial response to N. In contrast to our hypothesis, we found a decoupling of the plant and microbial communities such that the soil microbial community shifted under N independently of directional shifts in the plant community. These findings suggest there are not strong cascading effects of N deposition across the plant-soil interface in our system.

Peatland microbial community responses to plant functional group and drought are depth-dependent

Peatlands store one-third of Earth's soil carbon, the stability of which is uncertain due to climate change-driven shifts in hydrology and vegetation, and consequent impacts on microbial communities that mediate decomposition. Peatland carbon cycling varies over steep physicochemical gradients characterizing vertical peat profiles. However, it is unclear how drought-mediated changes in plant functional groups (PFGs) and water table (WT) levels affect microbial communities at different depths. We combined a multiyear mesocosm experiment with community sequencing across a 70-cm depth gradient, to test the hypotheses that vascular PFGs (Ericaceae vs. sedges) and WT (high vs. low) structure peatland microbial communities in depth-dependent ways. Several key results emerged. (i) Both fungal and prokaryote (bacteria and archaea) community structure shifted with WT and PFG manipulation, but fungi were much more sensitive to PFG whereas prokaryotes were much more sensitive to WT. (ii) PFG effects were largely driven by Ericaceae, although sedge effects were evident in specific cases (e.g., methanotrophs). (iii) Treatment effects varied with depth: the influence of PFG was strongest in shallow peat (0-10, 10-20 cm), whereas WT effects were strongest at the surface and middle depths (0-10, 30-40 cm), and all treatment effects waned in the deepest peat (60-70 cm). Our results underline the depth-dependent and taxon-specific ways that plant communities and hydrologic variability shape peatland microbial communities, pointing to the importance of understanding how these factors integrate across soil profiles when examining peatland responses to climate change.

The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation

Hydrologic shifts due to climate change will affect the cycling of carbon (C) stored in boreal peatlands. Carbon cycling in these systems is carried out by microorganisms and plants in close association. This study investigated the effects of experimentally manipulated water tables (lowered and raised) and plant functional groups on the peat and root microbiomes in a boreal rich fen. All samples were sequenced and processed for bacterial, archaeal (16S DNA genes; V4), and fungal (internal transcribed spacer 2 [ITS2]) DNA. Depth had a strong effect on microbial and fungal communities across all water table treatments. Bacterial and archaeal communities were most sensitive to the water table treatments, particularly at the 10- to 20-cm depth; this area coincides with the rhizosphere or rooting zone. Iron cyclers, particularly members of the family Geobacteraceae, were enriched around the roots of sedges, horsetails, and grasses. The fungal community was affected largely by plant functional group, especially cinquefoils. Fungal endophytes (particularly Acephala spp.) were enriched in sedge and grass roots, which may have underappreciated implications for organic matter breakdown and cycling. Fungal lignocellulose degraders were enriched in the lowered water table treatment. Our results were indicative of two main methanogen communities, a rooting zone community dominated by the archaeal family Methanobacteriaceae and a deep peat community dominated by the family Methanomicrobiaceae. IMPORTANCE This study demonstrated that roots and the rooting zone in boreal fens support organisms likely capable of methanogenesis, iron cycling, and fungal endophytic association and are directly or indirectly affecting carbon cycling in these ecosystems. These taxa, which react to changes in the water table and associate with roots and, particularly, graminoids, may gain greater biogeochemical influence, as projected higher precipitation rates could lead to an increased abundance of sedges and grasses in boreal fens.

Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - A research agenda

Peatlands are wetland ecosystems with great significance as natural habitats and as major global carbon stores. They have been subject to widespread exploitation and degradation with resulting losses in characteristic biota and ecosystem functions such as climate regulation. More recently, large-scale programmes have been established to restore peatland ecosystems and the various services they provide to society. Despite significant progress in peatland science and restoration practice, we lack a process-based understanding of how soil microbiota influence peatland functioning and mediate the resilience and recovery of ecosystem services, to perturbations associated with land use and climate change. We argue that there is a need to: in the short-term, characterise peatland microbial communities across a range of spatial and temporal scales and develop an improved understanding of the links between peatland habitat, ecological functions and microbial processes; in the medium term, define what a successfully restored 'target' peatland microbiome looks like for key carbon cycle related ecosystem services and develop microbial-based monitoring tools for assessing restoration needs; and in the longer term, to use this knowledge to influence restoration practices and assess progress on the trajectory towards 'intact' peatland status. Rapid advances in genetic characterisation of the structure and functions of microbial communities offer the potential for transformative progress in these areas, but the scale and speed of methodological and conceptual advances in studying ecosystem functions is a challenge for peatland scientists. Advances in this area require multidisciplinary collaborations between peatland scientists, data scientists and microbiologists and ultimately, collaboration with the modelling community. Developing a process-based understanding of the resilience and recovery of peatlands to perturbations, such as climate extremes, fires, and drainage, will be key to meeting climate targets and delivering ecosystem services cost effectively.

Paludiculture as a sustainable land use alternative for tropical peatlands: A review

Peatlands cover approximately 4.2 million km² of terrestrial land surface and store up to 700 Pg of terrestrial carbon. Preserving the carbon stocks in peatland is therefore crucial for climate change mitigation. Under natural conditions, peatland carbon storage is maintained by moist peat conditions, which decreases decomposition and encourages peat formation. However, conversion of peatlands to drainage-based agriculture in the form of industrial plantations and smallholder farming has resulted in globally significant greenhouse gas emissions. Paludiculture, loosely conceptualized as biomass production on wet peatlands with the potential to maintain carbon storage, is proposed as a sustainable, non-drainage-based agriculture alternative for peatland use. However, while the concept of paludiculture was developed in temperate ecoregions, its application in the tropics is poorly understood. In this review, we examine common definitions of paludiculture used in literature to derive key themes and future directions. We found three common themes: ecosystem services benefits of paludiculture, hydrological conditions of peatlands, and vegetation selection for planting. Ambiguities surrounding these themes have led to questions on whether paludiculture applications are sustainable in the context of carbon sequestration in peat soil. This review aims to evaluate and advance current understanding of paludiculture in the context of tropical peatlands, which is especially pertinent given expanding agriculture development into Central Africa and South America, where large reserves of peatlands were recently discovered.

Recovery of the CO2 sink in a remnant peatland following water table lowering

Peatland biological, physical and chemical properties change over time in response to alterations in long-term water table position. Such changes complicate our ability to predict the response of peatland carbon stocks to sustained drying. In order to better understand the effect of sustained lowering of the water table on peatland carbon dynamics, we re-visited a drainage-affected bog, repeating eddy covariance measurements of CO₂ flux after a 16-year interval. We found the ecosystem CO₂ sink to have strengthened across the intervening period, despite a deep and fluctuating water table. This was mostly due to an increase in CO₂ uptake through photosynthesis associated with increased shrub growth. We also observed a decline in CO₂ loss through ecosystem respiration. These changes could not be attributed to environmental conditions. Air temperature was the only significant contemporaneous driver of monthly anomalies in CO₂ fluxes, with higher temperatures decreasing the net CO₂ sink via increased ecosystem respiration. However, the effect of air temperature was weak in comparison to the underlying differences between time periods. Therefore, we demonstrate that for drying peatlands, long-term changes within the ecosystem can be of primary importance as drivers of CO₂ exchange. In this peatland, the ecosystem carbon sink has shown resilience to water table drawdown, with internal feedbacks leading to a recovery of the CO₂ sink after a 16-year interval.

Vegetation, pH and Water Content as Main Factors for Shaping Fungal Richness, Community Composition and Functional Guilds Distribution in Soils of Western Greenland

Fungi are the most abundant and one of the most diverse components of arctic soil ecosystems, where they are fundamental drivers of plant nutrient acquisition and recycling. Nevertheless, few studies have focused on the factors driving the diversity and functionality of fungal communities associated with these ecosystems, especially in the scope of global warming that is particularly affecting Greenland and is leading to shrub expansion, with expected profound changes of soil microbial communities. We used soil DNA metabarcoding to compare taxonomic and functional composition of fungal communities in three habitats [bare ground (BG), biological soil crusts (BSC), and vascular vegetation (VV) coverage] in Western Greenland. Fungal richness increased with the increasing complexity of the coverage, but BGs and BSCs samples showed the highest number of unique OTUs. Differences in both fungal community composition and distribution of functional guilds identified were correlated with edaphic factors (mainly pH and water content), in turn connected with the different type of coverage. These results suggest also possible losses of diversity connected to the expansion of VV and possible interactions among the members of different functional guilds, likely due to the nutrient limitation, with potential effects on elements recycling.

Plant communities control long term carbon accumulation and biogeochemical gradients in a Patagonian bog

Peat carbon accumulation is controlled by both large scale factors, such as climate and hydrological setting, and small scale factors, such as microtopography and plant community. These small scale factors commonly vary within peatlands and can cause variation in biogeochemical traits and carbon accumulation within the same site. To understand these within-site variations, we investigated long term carbon accumulation, peat decomposition, biogeochemistry of pore water and plant macrofossils along a transect in an ombrotrophic bog in southern Patagonia. An additional question we addressed is how historical deposition of volcanic ash on the peatland has affected its carbon balance. Variability in plant community and water table led to differences in long term peat and carbon accumulation (peat moss > cushion plant), organic matter decomposition (cushion plant > peat moss), and methane production (peat moss > cushion plant). Macrofossil analysis and radiocarbon dating indicated a relationship between plant community and carbon accumulation or decomposition during the historical succession of vegetation in the peatland. C/N ratio and isotopic signatures reflected variability in plant community as litter source, and DOC concentrations were controlled by humification level. Volcanic ash deposition had only limited effect on plant composition, but it was associated with increased decomposition in overlying peat layers. This study highlights the importance of understanding how plant communities develop, as changes in communities could significantly affect the potential of ombrotrophic peatlands as C sink.

The effects of litter quality and living plants on the home-field advantage of aquatic macrophyte decomposition in a eutrophic urban lake, China

The 'home-field advantage' (HFA) hypothesis states that litter decomposes faster in its 'home' habitat, i.e., in the same habitat as the plant species from which it was derived than it does 'away' from its home, i.e., in the habitat of a different plant species. However, studies pertaining to HFA in aquatic ecosystems are relatively few. One area not well-studied is whether the presence of living plants has an effect on the HFA of aquatic macrophyte decomposition in a eutrophic lake. Here, we conducted reciprocal litter transplanting experiments, coupled with removal of living plants, between a dominant submerged macrophyte (Myriophyllum spicatum) and a floating-leaved macrophyte (Trapa natans) in a eutrophic urban lake in China, for 50 days. Test plots were created at sites by removing the dominant macrophytes from their 'home' habitats to test the effect of living plants on decomposition rates and HFA effect. The water chemistry of the two sites was not significantly different. The initial litter qualities were significantly higher in M. spicatum than in T. natans. The decomposition rates of T. natans were significantly greater in both the control and test plots in its 'home' habitat, indicating a positive HFA effect, while the decomposition rates of M. spicatum were significantly greater in the 'away' habitat compared to its 'home' habitat in all treatments, indicating a home-field disadvantage effect. The removal of living plants had a noticeable effect on the abundance of associated-macroinvertebrates, but had an inconsistent effect on decomposition rates providing conflicting evidence for HFA. In total, 10 macroinvertebrate taxa from four functional feeding groups (FFGs) were collected during the experiment. Compared to macroinvertebrate communities, microbial activities showed less correlation with decomposition rates. Our results provide evidence to suggest that decomposition-based HFA is dependent upon litter quality, habitat, and their interactions in a eutrophic urban lake.

Combination of Warming and Vegetation Composition Change Strengthens the Environmental Controls on N2O Fluxes in a Boreal Peatland

Climate warming and vegetation composition change are expected to influence greenhouse gas emissions from boreal peatlands. However, the interactive effects of warming and different vegetation compositions on N2O dynamics are poorly known, although N2O is a very potent greenhouse gas. In this study, manipulated warming and vegetation composition change were conducted in a boreal peatland to investigate the effects on N2O fluxes during the growing seasons in 2015 and 2016. We did not find a significant effect of warming treatment and combination treatments of warming and vegetation composition change on N2O fluxes. However, sedge removal treatment significantly increased N2O emissions by three-fold. Compared with the treatment of shrub and sedge removal, the combined treatment of warming and shrub and sedge removal significantly increased N2O consumption by five-fold. Similar to N2O fluxes, the cumulative N2O flux increased by ~3.5 times under sedge removal treatment, but this effect was not significant. In addition, the results showed that total soil nitrogen was the main control for N2O fluxes under combinative treatments of warming and sedge/shrub removal, while soil temperature and dissolved organic carbon were the main controls for N2O release under warming combined with the removal of all vascular plants. Our results indicate that boreal peatlands have a negligible effect on N2O fluxes in the short-term under climate change, and environmental controls on N2O fluxes become increasingly important under the condition of warming and vegetation composition change.

Global effects of plant litter alterations on soil CO2 to the atmosphere

Soil respiration (Rs) is the largest terrestrial carbon (C) efflux to the atmosphere and is predicted to increase drastically through global warming. However, the responses of Rs to global warming are complicated by the fact that terrestrial plant growth and the subsequent input of plant litter to soil are also altered by ongoing climate change and human activities. Despite a number of experiments established in various ecosystems around the world, it remains a challenge to predict the magnitude and direction of changes in Rs and its temperature sensitivity (Q₁₀ ) due to litter alteration. We present a meta-analysis of 100 published studies to examine the responses of Rs and Q₁₀ to manipulated aboveground and belowground litter alterations. We found that 100% aboveground litter addition (double litter) increased Rs by 26.1% (95% confident intervals, 18.4%-33.7%), whereas 100% aboveground litter removal, root removal and litter + root removal reduced Rs by 22.8% (18.5%-27.1%), 34.1% (27.2%-40.9%) and 43.4% (36.6%-50.2%) respectively. Moreover, the effects of aboveground double litter and litter removal on Rs increased with experimental duration, but not those of root removal. Aboveground litter removal marginally increased Q₁₀ by 6.2% (0.2%-12.3%) because of the higher temperature sensitivity of stable C substrate than fresh litter. Estimated from the studies that simultaneously tested the responses of Rs to aboveground litter addition and removal and assuming negligible changes in root-derived Rs, "priming effect" on average accounted for 7.3% (0.6%-14.0%) of Rs and increased over time. Across the global variation in terrestrial ecosystems, the effects of aboveground litter removal, root removal, litter + root removal on Rs as well as the positive effect of litter removal on Q₁₀ increased with water availability. Our meta-analysis indicates that priming effects should be considered in predicting Rs to climate change-induced increases in litterfall. Our analysis also highlights the need to incorporate spatial climate gradient in projecting long-term Rs responses to litter alterations.

Tipping point in plant-fungal interactions under severe drought causes abrupt rise in peatland ecosystem respiration

Ecosystems are increasingly prone to climate extremes, such as drought, with long-lasting effects on both plant and soil communities and, subsequently, on carbon (C) cycling. However, recent studies underlined the strong variability in ecosystem's response to droughts, raising the issue of nonlinear responses in plant and soil communities. The conundrum is what causes ecosystems to shift in response to drought. Here, we investigated the response of plant and soil fungi to drought of different intensities using a water table gradient in peatlands-a major C sink ecosystem. Using moving window structural equation models, we show that substantial changes in ecosystem respiration, plant and soil fungal communities occurred when the water level fell below a tipping point of -24 cm. As a corollary, ecosystem respiration was the greatest when graminoids and saprotrophic fungi became prevalent as a response to the extreme drought. Graminoids indirectly influenced fungal functional composition and soil enzyme activities through their direct effect on dissolved organic matter quality, while saprotrophic fungi directly influenced soil enzyme activities. In turn, increasing enzyme activities promoted ecosystem respiration. We show that functional transitions in ecosystem respiration critically depend on the degree of response of graminoids and saprotrophic fungi to drought. Our results represent a major advance in understanding the nonlinear nature of ecosystem properties to drought and pave the way towards a truly mechanistic understanding of the effects of drought on ecosystem processes.

Taxonomic and functional turnover are decoupled in European peat bogs

In peatland ecosystems, plant communities mediate a globally significant carbon store. The effects of global environmental change on plant assemblages are expected to be a factor in determining how ecosystem functions such as carbon uptake will respond. Using vegetation data from 56 Sphagnum-dominated peat bogs across Europe, we show that in these ecosystems plant species aggregate into two major clusters that are each defined by shared response to environmental conditions. Across environmental gradients, we find significant taxonomic turnover in both clusters. However, functional identity and functional redundancy of the community as a whole remain unchanged. This strongly suggests that in peat bogs, species turnover across environmental gradients is restricted to functionally similar species. Our results demonstrate that plant taxonomic and functional turnover are decoupled, which may allow these peat bogs to maintain ecosystem functioning when subject to future environmental change.

Peatland plant communities are expected to be affected by environmental change, though how assemblages respond is not fully understood. Here, Robroek et al. show that peatland species occur in two distinct clusters, and functional identity and redundancy was maintained under taxonomic turnover.

Diverse fen plant communities enhance carbon-related multifunctionality, but do not mitigate negative effects of drought

Global change, like droughts, can destabilize the carbon sink function of peatlands, either directly or indirectly through changes in plant community composition. While the effects of drought and plant community composition on individual carbon (C) related processes are well understood, their effect on multiple C-related processes simultaneously-multifunctionality-is poorly known. We studied the effect of drought on four C-related processes (net and gross CO₂ exchange, methane fluxes, and dissolved organic carbon content) in a plant removal experiment. Plant functional type (PFT) removal (graminoids, herbs, Polytrichum spp., incl. combinations) negatively affected multifunctionality; most markedly when all PFTs were removed. Our results corroborate a negative drought effect on C-related multifunctionality. Drought reduced multifunctionality, and this reduction was again largest when all PFTs were removed. Our data further indicate that much of these negative drought effects were carried over and maintained from the initial removal treatment. These results suggest that while a high diversity in plant functional types is associated to high C-related multifunctionality, plant community assembly does not drive the ability of peatlands to withstand the negative impacts of drought on multifunctionality. Hence, to safeguard the carbon cycling function in intact peatlands, the effects of climate change on the functional composition of the peatland plant community needs to be minimized.

Diverse fen plant communities enhance carbon-related multifunctionality, but do not mitigate negative effects of drought

Global change, like droughts, can destabilize the carbon sink function of peatlands, either directly or indirectly through changes in plant community composition. While the effects of drought and plant community composition on individual carbon (C) related processes are well understood, their effect on multiple C-related processes simultaneously-multifunctionality-is poorly known. We studied the effect of drought on four C-related processes (net and gross CO₂ exchange, methane fluxes, and dissolved organic carbon content) in a plant removal experiment. Plant functional type (PFT) removal (graminoids, herbs, Polytrichum spp., incl. combinations) negatively affected multifunctionality; most markedly when all PFTs were removed. Our results corroborate a negative drought effect on C-related multifunctionality. Drought reduced multifunctionality, and this reduction was again largest when all PFTs were removed. Our data further indicate that much of these negative drought effects were carried over and maintained from the initial removal treatment. These results suggest that while a high diversity in plant functional types is associated to high C-related multifunctionality, plant community assembly does not drive the ability of peatlands to withstand the negative impacts of drought on multifunctionality. Hence, to safeguard the carbon cycling function in intact peatlands, the effects of climate change on the functional composition of the peatland plant community needs to be minimized.

Long-term nitrogen and phosphorus enrichment alters vegetation species composition and reduces carbon storage in upland soil

Reactive nitrogen (N) deposition can affect ecosystem processes, particularly in oligotrophic upland habitats. Phosphorus (P) addition has been proposed to reduce the effects of N enrichment on N leaching and acidification, since P limitation can reduce biomass production and consequent sequestration of reactive N. However, biodiversity is often reduced in more productive ecosystems and P limitation may protect against this effect. Responses to P availability in instances of high N deposition are poorly understood. This study investigated the ecosystem response to alleviation of P limitation, using a long-term nutrient addition experiment (1996-2012) three years after ceasing N inputs and 15years after a single P application. Substantial differences were observed in the structure and composition of vegetation species and above-ground vegetation biomass. Vegetation height was greater in the N+P addition treatments (+38% cf. control), with increased cryptogam cover (+47%), whereas N addition increased graminoid species cover (+68%). Vegetation diversity was significantly reduced by the addition of P (-21%), indicating that P limitation is likely to be an important mechanism that limits biodiversity loss in upland habitats exposed to chronic N deposition. Significant differences in soil C and N contents were also observed between treatments. Relative to control, the addition of N increased soil C (+11%) and N (+11%) pool sizes, whereas the addition of N and P reduced soil C (-12%) and N (-13%) pool sizes. This demonstrated the importance of P availability for upland ecosystem processes, and highlights the long-term effects of P addition on vegetation species composition and C storage. Thus, the addition of P cannot be endorsed as a method for reducing impacts of N deposition. Capsule: Phosphorus limitation is a major mechanism governing ecosystem processes in situations of high atmospheric nitrogen deposition.

Effect of elevated atmospheric CO2 concentration on growth and leaf litter decomposition of Quercus acutissima and Fraxinus rhynchophylla

The atmospheric carbon dioxide (CO2) level is expected to increase substantially, which may change the global climate and carbon dynamics in ecosystems. We examined the effects of an elevated atmospheric CO2 level on the growth of Quercus acutissima and Fraxinus rhynchophylla seedlings. We investigated changes in the chemical composition of leaf litter, as well as litter decomposition. Q. acutissima and F. rhynchophylla did not show differences in dry weight between ambient CO2 and enriched CO2 treatments, but they exhibited different patterns of carbon allocation, namely, lower shoot/root ratio (S/R) and decreased specific leaf area (SLA) under CO2-enriched conditions. The elevated CO2 concentration significantly reduced the nitrogen concentration in leaf litter while increasing lignin concentrations and carbon/nitrogen (C/N) and lignin/N ratios. The microbial biomass associated with decomposing Q. acutissima leaf litter was suppressed in CO2 enrichment chambers, while that of F. rhynchophylla was not. The leaf litter of Q. acutissima from the CO2-enriched chambers, in contrast with F. rhynchophylla, contained much lower nutrient concentrations than that of the litter in the ambient air chambers. Consequently, poorer litter quality suppressed decomposition.

Colonization of a Deglaciated Moraine: Contrasting Patterns of Carbon Uptake and Release from C3 and CAM Plants

INTRODUCTION

Current glacier retreat makes vast mountain ranges available for vegetation establishment and growth. As a result, carbon (C) is accumulated in the soil, in a negative feedback to climate change. Little is known about the effective C budget of these new ecosystems and how the presence of different vegetation communities influences CO2 fluxes.

METHODS

On the Matsch glacier forefield (Alps, Italy) we measured over two growing seasons the Net Ecosystem Exchange (NEE) of a typical grassland, dominated by the C3 Festuca halleri All., and a community dominated by the CAM rosettes Sempervivum montanum L. Using transparent and opaque chambers, with air temperature as the driver, we partitioned NEE to calculate Ecosystem Respiration (Reco) and Gross Ecosystem Exchange (GEE). In addition, soil and vegetation samples were collected from the same sites to estimate the Net Ecosystem Carbon Balance (NECB).

RESULTS

The two communities showed contrasting GEE but similar Reco patterns, and as a result they were significantly different in NEE during the period measured. The grassland acted as a C sink, with a total cumulated value of -46.4±35.5 g C m-2 NEE, while the plots dominated by the CAM rosettes acted as a source, with 31.9±22.4 g C m-2. In spite of the different NEE, soil analysis did not reveal significant differences in carbon accumulation of the two plant communities (1770±130 for F. halleri and 2080±230 g C m-2 for S. montanum), suggesting that processes often neglected, like lateral flows and winter respiration, can have a similar relevance as NEE in the determination of the Net Ecosystem Carbon Balance.

Eutrophication triggers contrasting multilevel feedbacks on litter accumulation and decomposition in fens

Eutrophication is a major threat for the persistence of nutrient-poor fens, as multilevel feedbacks on decomposition rates could trigger carbon loss and increase nutrient cycling. Here, we experimentally investigate the effects of macronutrient (NPK) enrichment on litter quality of six species of sedge (Carex sp.), which we relate to litter decomposition rates in a nutrient-poor and nutrient-rich environment. Our research focused on four levels: we examined how eutrophication alters (1) fresh litter production ("productivity shift"), (2) litter stoichiometry within the same species ("intraspecific shift"), (3) overall litter stoichiometry of the vegetation under the prediction that low-competitive species are outcompeted by fast-growing competitors ("interspecific shift"), and (4) litter decomposition rates due to an altered external environment (e.g., shifts in microbial activity; "exogenous shift"). Eutrophication triggered a strong increase in fresh litter production. Moreover, individuals of the same species produced litter with lower C:N and C:P ratios, higher K contents, and lower lignin, Ca and Mg contents (intraspecific shift), which increased litter decomposability. In addition, species typical for eutrophic conditions produced more easily degradable litter than did species typical for nutrient-poor conditions (interspecific shift). However, the effects of nutrient loading of the external environment (exogenous shift) were contradictory. Here, interactions between litter type and ambient nutrient level indicate that the (exogenous) effects of eutrophication on litter decomposition rates are strongly dependent of litter quality. Moreover, parameters of litter quality only correlated with decomposition rates for litter incubated in nutrient-poor environments, but not in eutrophic environments. This suggests that rates of litter decomposition can be uncoupled from litter stoichiometry under eutrophic conditions. In conclusion, our results show that eutrophication affects litter accumulation and -decomposition at multiple levels, in which stimulatory and inhibitory effects interact. The cumulative effect of these interactions ultimately determine whether peatlands remain sinks or become sources of carbon under eutrophic conditions.

Vascular plants promote ancient peatland carbon loss with climate warming

Northern peatlands have accumulated one third of the Earth's soil carbon stock since the last Ice Age. Rapid warming across northern biomes threatens to accelerate rates of peatland ecosystem respiration. Despite compensatory increases in net primary production, greater ecosystem respiration could signal the release of ancient, century- to millennia-old carbon from the peatland organic matter stock. Warming has already been shown to promote ancient peatland carbon release, but, despite the key role of vegetation in carbon dynamics, little is known about how plants influence the source of peatland ecosystem respiration. Here, we address this issue using in situ (14)C measurements of ecosystem respiration on an established peatland warming and vegetation manipulation experiment. Results show that warming of approximately 1 °C promotes respiration of ancient peatland carbon (up to 2100 years old) when dwarf-shrubs or graminoids are present, an effect not observed when only bryophytes are present. We demonstrate that warming likely promotes ancient peatland carbon release via its control over organic inputs from vascular plants. Our findings suggest that dwarf-shrubs and graminoids prime microbial decomposition of previously 'locked-up' organic matter from potentially deep in the peat profile, facilitating liberation of ancient carbon as CO2. Furthermore, such plant-induced peat respiration could contribute up to 40% of ecosystem CO2 emissions. If consistent across other subarctic and arctic ecosystems, this represents a considerable fraction of ecosystem respiration that is currently not acknowledged by global carbon cycle models. Ultimately, greater contribution of ancient carbon to ecosystem respiration may signal the loss of a previously stable peatland carbon pool, creating potential feedbacks to future climate change.

Contribution of Soil Fauna to Foliar Litter-Mass Loss in Winter in an Ecotone between Dry Valley and Montane Forest in the Upper Reaches of the Minjiang River

Litter decomposition during winter can provide essential nutrients for plant growth in the subsequent growing season, which plays important role in preventing the expansion of dry areas and maintaining the stability of ecotone ecosystems. However, limited information is currently available on the contributions of soil fauna to litter decomposition during winter in such ecosystems. Therefore, a field experiment that included litterbags with two different mesh sizes (0.04 mm and 3 mm) was conducted to investigate the contribution of soil fauna to the loss of foliar litter mass in winter from November 2013 to April 2014 along the upper reaches of the Minjiang River. Two litter types of the dominant species were selected in each ecosystem: cypress (Cupressus chengiana) and oak (Quercus baronii) in ecotone; cypress (Cupressus chengiana) and clovershrub (Campylotropis macrocarpa) in dry valley; and fir (Abies faxoniana) and birch (Betula albosinensis) in montane forest. Over one winter incubation, foliar litter lost 6.0%-16.1%, 11.4%-26.0%, and 6.4%-8.5% of initial mass in the ecotone, dry valley and montane forest, respectively. Soil fauna showed obvious contributions to the loss of foliar litter mass in all of the ecosystems. The highest contribution (48.5%-56.8%) was observed in the ecotone, and the lowest contribution (0.4%-25.8%) was observed in the montane forest. Compared with other winter periods, thawing period exhibited higher soil fauna contributions to litter mass loss in ecotone and dry valley, but both thawing period and freezing period displayed higher soil fauna contributions in montane forest. Statistical analysis demonstrated that the contribution of soil fauna was significantly correlated with temperature and soil moisture during the winter-long incubation. These results suggest that temperature might be the primary control factor in foliar litter decomposition, but more active soil fauna in the ecotone could contribute more in litter decomposition and its related ecological processes in this region.