Stream restoration can reduce nitrate levels in agricultural landscapes

The EU Water Framework Directive (WFD) has emphasized that altered stream/river morphology and diffuse pollution are the two major pressures faced by European water bodies at catchment scales. Increasing efforts have been directed toward restoration to meet WFD standards for ecological health, but this work has achieved limited success. One challenge is that little is known about how morphological changes (i.e., re-meandering) may affect nitrate retention within whole stream networks. We investigated this issue in the well-monitored Bode catchment (3200 km2) in central Germany. First, we implemented a fully distributed process-based mHM-Nitrate model, exploring its performance over the period from 2015 to 2018. Second, we simulated the effects of restoring more natural stream morphology (i.e., increasing sinuosity) on nitrate retention. The mHM-Nitrate model performed well in replicating daily discharge and nitrate concentrations (median Kling-Gupta values of 0.78 and 0.74, respectively). Within the stream network, mean and standard deviation (SD) of gross nitrate retention efficiency was 5.1 ± 0.61 % and 74.7 ± 23.2 % in the winter and summer, respectively; this measure took into account both denitrification and assimilatory uptake. In the summer, the denitrification rate was about twice as high in a lowland sub-catchment dominated by agricultural lands as in a mountainous sub-catchment dominated by forested areas (median ± SD of 204 ± 22.6 and 102 ± 22.1 mg N m-2 d-1, respectively). Similarly, in the same season, the assimilatory uptake rate was approximately five times higher in streams surrounded by lowland agricultural areas than in streams in higher-elevation, forested areas (median ± SD of 200 ± 27.1 and 39.1 ± 8.7 mg N m-2 d-1, respectively). This suggests that restoration strategies targeted at lowland agricultural areas may have a greater potential for increasing nitrate retention. In our simulation, restoring stream sinuosity was found to increase net nitrate retention efficiency by up to 25.4 ± 5.3 %; greater effects were seen in small streams. Taken together, our results indicate that restoration efforts should consider augmenting stream sinuosity to increase nitrate retention and decrease nitrate concentrations at the catchment scale.

Interacting drivers and their tradeoffs for predicting denitrification potential across a strong urban to rural gradient within heterogeneous landscapes

Denitrification is a significant regulator of nitrogen pollution in diverse landscapes but is difficult to quantify. We examined relationships between denitrification potential and soil and landscape properties to develop a model that predicts denitrification potential at a landscape level. Denitrification potential, ancillary soil variables, and physical landscape attributes were measured at study sites within urban, suburban, and forested environments in the Gwynns Falls watershed in Baltimore, Maryland in a series of studies between 1998 and 2014. Data from these studies were used to develop a statistical model for denitrification potential using a subset of the samples (N = 188). The remaining measurements (N = 150) were used to validate the model. Soil moisture, soil respiration, and total soil nitrogen were the best predictors of denitrification potential (R²_adj = 0.35), and the model was validated by regressing observed vs. predicted values. Our results suggest that soil denitrification potential can be modeled successfully using these three parameters, and that this model performs well across a variety of natural and developed land uses. This model provides a framework for predicting nitrogen dynamics in varying land use contexts. We also outline approaches to develop appropriate landscape-scale proxies for the key model inputs, including soil moisture, respiration, and soil nitrogen.

Controls on subsurface nitrate and dissolved reactive phosphorus losses from agricultural fields during precipitation-driven events

The magnitude of nitrogen (N) and phosphorus (P) exported from agricultural fields via subsurface tile drainage systems is determined by site-specific interactions between weather, soil, field, and management characteristics. Here, we used multiple regression analyses to evaluate the influence of 29 controls of precipitation event-driven discharge, nitrate (NO₃^--N) load, and dissolved reactive P (DRP) load from subsurface tile drains, leveraging a unique dataset of ~7000 precipitation events observed across 40 agricultural fields (n = 190 site years) instrumented to collect continuous water quality samples. We calculated marginal effects of significant controls and assessed the modifying influence of event rainfall, duration, and intensity, and antecedent precipitation. Tile discharge was strongly and positively influenced by previous 7-day precipitation and total rainfall and negatively influenced by daily temperature and tile spacing. Both tile NO₃^--N and DRP loads were positively influenced by transport and source variables, including event discharge and total fertilizer applied as well as soil test P (STP) in the case of tile DRP load; factors with the strongest negative influence on tile NO₃^--N and DRP loads were related to time of year. The strength and direction of both positive and negative controls also varied with precipitation characteristics. For example, the positive influence of event discharge on nutrient loads lessened as event duration, event intensity, and previous 7-day precipitation increased, while the positive influence of N and P sources strengthened, particularly in response to extreme (or maximum) events. Results here demonstrate the predominant role of transport and source controls while accounting for interactive effects among site-specific characteristics and underscore the importance of storm dynamics when managing N and P loss from agricultural fields.

Relative importance of landscape versus local wetland characteristics for estimating wetland denitrification potential

Wetlands can be significant sinks for N_r, via denitrification. There is a lack of understanding about factors controlling denitrification. Research suggests that hydrology, geomorphology, and nitrogen loading are dominant controls. We compared site-scale characteristics with denitrification enzyme activity (DEA) in wetlands along gradients of drainage basin land use to explore the relative importance of landscape and site-scale factors for determining denitrification potential. DEA rates ranged between 0.01-1.69 (μg N gdw^-1 hr^-1), with most sites falling at the lower end. Sites with higher DEA rates had higher percentages of soil carbon and nitrogen, concentrations of soil extractable NO₃ and percent loss on ignition. Sites with upstream agricultural activity had higher DEA rates than more natural sites, but there existed a wide range of DEA rates along both agricultural and urban land gradients. When multiple site and landscape-scale explanatory factors were compared to DEA rates, two site and one landscape scale characteristic (Soil NO₃, Soil Percent N, and Percent Agriculture) had significant (p<0.001, cum. r² = 0.77) correlations with DEA rates. Our results suggest that DEA is controlled mainly by local-scale site characteristics with more work needed to determine the interdependencies and relative importance among these and potentially related landscape-scale factors.

Effects of Urban Stormwater Control Measures on Denitrification in Receiving Streams

Urban areas are increasingly adopting the use of ecologically-based technologies for stormwater management to mitigate the effects of impervious surface runoff on receiving water bodies. While stormwater control measures (SCMs) reduce runoff, their ability to influence ecosystem function in receiving streams is not well known. To understand the effect of SCMs on net ecosystem function in stream networks, we measured sediment denitrification in four streams across a gradient of urban and suburban residential development in Charlotte, NC. We evaluated the influence of SCM inputs on actual (DNF) and potential (DEA) denitrification activity in stream sediments at the SCM-stream confluence to quantify microbial processes and the environmental factors that control them. DNF was variable across sites, ranging from 0–6.60 mg-N·m−2·h−1 and highly correlated with in-stream nitrate (NO3-N) concentrations. Sites with a greater impervious area showed a pattern of significantly higher DEA rates upstream of the SCM compared to downstream, while sites with less imperviousness showed the opposite trend. We hypothesize that this is because of elevated concentrations of carbon and nitrogen provided by pond and wetland outflows, and stabilization of the benthic habitat by lower peak discharge. These results suggest that SCMs integrated into the watershed have the potential to create cascading positive effects on in-stream nutrient processing and thereby improve water quality; however, at higher levels of imperviousness, the capacity for SCMs to match the scale of the impacts of urbanization likely diminishes.

Denitrification along the Stream-Riparian Continuum in Restored and Unrestored Agricultural Streams

Although floodplain restoration may improve stream-riparian connectivity and increase channel stability through cross-vane installation, stream bank regrading, and buffer revegetation, the impact of these geomorphic alterations on denitrification across the aquatic-terrestrial interface is poorly understood. Seasonal denitrification enzyme activity (DEA) was compared in stream-riparian ecotones of four streams with varying hydrologic connection, riparian vegetation composition, and agricultural influence. Riparian and stream DEA was generally higher in sites adjacent to agricultural fields due to proximity to nitrate source. Mean DEA was higher in the dormant season (riparian: 928 ± 116 ng N g dry mass [DM] h, stream: 108 ± 149 ng N g DM h) than in the growing season (riparian: 355 ± 55 ng N g DM h, stream: 45 ± 40 ng N g DM h) and was influenced by antecedent precipitation, soil texture, and landscape characteristics (land use, vegetation type, topography) in multivariate models. Hot spots of denitrification occurred at the confluence of fine soil textures with high organic matter and moisture, often at low-lying areas of the landscape. At the restored site, we observed enhanced denitrification in the reconnected floodplain but decreased stream denitrification capacity in pools. Across all sites, streams had lower DEA than riparian zones, stressing the importance of restoration approaches designed to conserve riparian areas and maintain hydrologic connectivity. Easily obtainable data including precipitation, adjacent land use, vegetation, and stream and floodplain geomorphology reasonably predicted denitrification potential compared with more complex models, showing potential for application in water resources and nitrogen management.

Use of continuous monitoring to assess stream nitrate flux and transformation patterns

Delivery of nitrogen from farmed fields to the stream network is an ongoing water quality issue in central North America and other parts of the world. Although fertilization and other farming practices have been refined to produce environmental improvements, stemming loss of nitrogen, especially in the soluble nitrate form, is a problem that has seemingly defied solution. The Iowa Nutrient Reduction Strategy is a policy initiative designed to implement conservation and other farm management practices to produce reductions in nitrate loading. The strategy does not focus on how the streams themselves may or may not be processing nitrogen and reducing downstream loading. We used continuous high-frequency nitrate and discharge monitoring over 3 years at two sites separated by 18 km in a low-order, agricultural stream in eastern Iowa to estimate how nitrogen is processed, and whether or not these processes are reducing downstream loading. We conclude that the upstream to downstream nitrate concentration decline between the two sites was not driven by denitrification. These data also show that nitrate concentrations are closely coupled to discharge during periods of adequate moisture, but decoupling of concentration from discharge occurs during dry periods. This decoupling is a possible indicator of in-stream nitrate processing. Finally, nitrate concentrations are likely diluted by water sourced from non-row crop land covers in the lower reaches of the watershed.

Small Reservoirs as a Beneficial Management Practice for Nitrogen Removal

There are few beneficial management practices (BMPs) with demonstrated efficacy in snowmelt-dominated regions. Small reservoirs are a BMP that can help mitigate flooding and reduce sediment transport, while reducing export of dissolved nutrients. To understand controls on nitrate removal and assess how this ecosystem service can be optimized, denitrification activity was measured in reservoirs and stream pools of the Tobacco Creek Model Watershed (Manitoba, Canada) via the chloramphenicol-amended acetylene block technique. Denitrification activity was positively correlated with nitrate and sediment organic carbon (SOC), and negatively correlated with sediment particle size and pH. Reservoirs exhibited higher denitrification activity than stream pools and were associated with higher levels of SOC, higher nitrate in early summer, and lower concentrations of dissolved oxygen. Nitrate was added to a set of samples to test for nitrate saturation, an indicator of poor ecological status, where nitrate concentrations exceed the denitrification capacity of microbes. Forty-nine percent of measurements demonstrated nitrate saturation, indicative of the need for additional remediation activity. Findings from this research suggest this BMP has higher capacity for nitrogen removal than stream pools because of higher denitrification rates and a higher apparent threshold for nitrate saturation, coupled with increased residence times. Results also inform the construction of additional reservoirs, which have been identified as a priority BMP in this region. Siting reservoirs in areas where conditions contribute to buildup of fine sediments and planting riparian vegetation to foster high organic C availability may help optimize denitrification, although tradeoffs in terms of other ecosystem services must be considered.

Nutrient variability and its influence on nitrogen processes in a highly turbid tropical estuary (Bangpakong, Gulf of Thailand)

Estuarine ecosystems in SE Asia have been poorly studied when compared to other tropical environments. Important gaps exist particularly in the understanding of their biogeochemical function and contribution to global change. In this work we looked into N-turnover in the water column and sediments of the Bangpakong estuary (13°N). A seasonal sampling program was performed along the salinity gradient covering different stretches of the estuary (68km). Key physical and chemical characteristics were also monitored in order to unravel possible environmental controls. Results showed the occurrence of active denitrification in sediments (5.7-50.9nmol N-N2/(cm(3)·hr)), and water column (3.5-1044pmol N-N2/(cm(3)·hr)). No seasonal or spatial variability was detected for denitrification potential in sediment samples. However, in the water column, the denitrification activity peaked during the transition season in the downstream sites coinciding with high turbidity levels. Therefore, in that period of the year, the water column compartment may be an important contributor to nitrate reduction within the estuary. The rather low nitrification rates detected were not always measurable, probably due to the reduced oxygen content and high siltation. This study is one of the few dealing simultaneously with sediments and water column processes in a highly turbid tropical estuary. Therefore, it emerges as a valuable contribution for the understanding of the dynamics of the nitrogen cycle in tropical environments by exploring the role of estuarine N microbial activity in reducing the effects of increased nitrogen loads.

The role of C:N:P stoichiometry in affecting denitrification in sediments from agricultural surface and tile-water wetlands

Nutrient stoichiometry within a wetland is affected by the surrounding land use, and may play a significant role in the removal of nitrate (NO3-N). Tile-drained, agricultural watersheds experience high seasonal inputs of NO3-N, but low phosphorus (PO4-P) and dissolved organic carbon (DOC) loads relative to surface water dominated systems. This difference may present stoichiometric conditions that limit denitrification within receiving waterways. We investigated how C:N:P ratios affected denitrification rates of sediments from tile-drained mitigation wetlands incubated for: 0, 5, 10, and 20 days. We then tested whether denitrification rates of sediments from surface-water and tile-drained wetlands responded differently to C:N ratios of 2:1 versus 4:1. Ratios of C:N:P (P < 0.05) and incubation length (P < 0.05) had a significant effect on denitrification in tile-drained wetland sediments. Carbon limitation of denitrification became evident at elevated NO3-N concentrations (20 mg L(-1)). Denitrification measured from tile water and surface water wetland sediments increased significantly (P < 0.05) at the 2:1 and 4:1 C:N treatments. The results from both experiments suggest wetland sediments provide a limiting pool of labile DOC to maintain prolonged NO3-N removal. Also, DOC limitation became more evident at elevated NO3-N concentrations (20 mg L(-1)). Irrespective of NO3-N concentrations, P did not limit denitrification rates. In addition to wetting period, residence time, and maintenance of anaerobic conditions, the availability of labile DOC is playing an important limiting role in sediment denitrification within mitigation wetlands.

Stoichiometric determination of nitrate fate in agricultural ecosystems during rainfall events

Ecologists have found a close relationship between the concentrations of nitrate (NO3-) and dissolved organic carbon (DOC) in ecosystems. However, it is difficult to determine the NO3- fate exactly because of the low coefficient in the constructed relationship. In the present paper, a negative power-function equation (r(2) = 0.87) was developed by using 411 NO3- data points and DOC:NO3- ratios from several agricultural ecosystems during different rainfall events. Our analysis of the stoichiometric method reveals several observations. First, the NO3- concentration demonstrated the largest changes when the DOC:NO3- ratio increased from 1 to 10. Second, the biodegradability of DOC was an important factor in controlling the NO3- concentration of agricultural ecosystems. Third, sediment was important not only as a denitrification site, but also as a major source of DOC for the overlying water. Fourth, a high DOC concentration was able to maintain a low NO3- concentration in the groundwater. In conclusion, this new stoichiometric method can be used for the accurate estimation and analysis of NO3- concentrations in ecosystems.

Denitrification in agriculturally impacted streams: seasonal changes in structure and function of the bacterial community

Denitrifiers remove fixed nitrogen from aquatic environments and hydrologic conditions are one potential driver of denitrification rate and denitrifier community composition. In this study, two agriculturally impacted streams in the Sugar Creek watershed in Indiana, USA with different hydrologic regimes were examined; one stream is seasonally ephemeral because of its source (tile drainage), whereas the other stream has permanent flow. Additionally, a simulated flooding experiment was performed on the riparian benches of the ephemeral stream during a dry period. Denitrification activity was assayed using the chloramphenicol amended acetylene block method and bacterial communities were examined based on quantitative PCR and terminal restriction length polymorphisms of the nitrous oxide reductase (nosZ) and 16S rRNA genes. In the stream channel, hydrology had a substantial impact on denitrification rates, likely by significantly lowering water potential in sediments. Clear patterns in denitrification rates were observed among pre-drying, dry, and post-drying dates; however, a less clear scenario was apparent when analyzing bacterial community structure suggesting that denitrifier community structure and denitrification rate were not strongly coupled. This implies that the nature of the response to short-term hydrologic changes was physiological rather than increases in abundance of denitrifiers or changes in composition of the denitrifier community. Flooding of riparian bench soils had a short-term, transient effect on denitrification rate. Our results imply that brief flooding of riparian zones is unlikely to contribute substantially to removal of nitrate (NO3-) and that seasonal drying of stream channels has a negative impact on NO3- removal, particularly because of the time lag required for denitrification to rebound. This time lag is presumably attributable to the time required for the denitrifiers to respond physiologically rather than a change in abundance or community composition.

Influence of environmental factors on net N₂ and N₂O production in sediment of freshwater rivers

Denitrification is an important N removal process in aquatic systems but is also implicated as a potential source of global N₂O emissions. However, the key factors controlling this process as well as N₂O emissions remain unclear. In this study, we identified the main factors that regulate the production of net N₂ and N₂O in sediments collected from rivers with a large amount of sewage input in the Taihu Lake region. Net N₂ and N₂O production were strongly associated with the addition of NO₃(-)-N and NH₄(+)-N. Specifically, NO₃(-)-N controlled net N₂ production following Michaelis-Menten kinetics. The maximum rate of net N₂ production (V max) was 116.3 μmol N2-N m(-2) h(-1), and the apparent half-saturation concentration (k m) was 0.65 mg N L(-1). N₂O to N₂ ratios increased from 0.18 ± 0.03 to 0.68 ± 0.16 with the addition of NO₃(-)-N, suggesting that increasing NO₃(-)-N concentrations favored the production of N₂O more than N₂. The addition of acetate enhanced net N₂ production and N₂O to N₂ ratios, but the ratios decreased by about 59.5% when acetate concentrations increased from 50 to 100 mg C L(-1), suggesting that the increase of N₂O to N₂ ratios had more to do with the net N₂ production rate rather than acetate addition in this experiment. The addition of Cl(-) did not affect the net N₂ production rates, but significantly enhanced N₂O to N₂ ratios (the ratios increased from 0.02 ± 0.00 to 0.10 ± 0.00), demonstrating that the high salinity effect might have a significant regional effect on N₂O production. Our results suggest that the presence of N-enriching sewage discharges appear to stimulate N removal but also increase N₂O to N₂ ratios.

Differential Carbon and Nitrogen Controls of Denitrification in Riparian Zones and Streams along an Urban to Exurban Gradient

Denitrification is an anaerobic microbial process that transforms nitrate (NO) to nitrogen (N) gas, preventing the movement of NO into coastal waters where it can lead to eutrophication. Urbanization can reduce the potential for denitrification in riparian zones and streams by altering the environmental conditions that foster denitrification (i.e., low oxygen and available C). Here we evaluated the factors limiting denitrification potential in forested and herbaceous riparian and stream pool and organic debris dam habitats in urban, suburban, exurban, and forested reference watersheds in the Baltimore, Maryland metropolitan area. Denitrification potential (with and without C and NO additions) and microbial biomass C and N content, potential net N mineralization and nitrification, microbial respiration, and inorganic N pools were measured in summer (June) and fall (November). Denitrification potentials were highest in the herbaceous riparian soils and lowest in pool sediments. Forested riparian soil denitrification potential was highest in the exurban watershed but in other habitats did not vary with watershed type. Nearly all variables were higher in June than in November. Overall, C was a more important driver of denitrification potential than N; potentials in unamended and N-amended treatments were very similar (<200 ng N g h) and were much lower than in the C-amended and C+N-amended treatments (>800 ng N g h). Our results suggest that efforts to enhance denitrification in urban watersheds need to focus on the differential controls of denitrification across habitats, urban land use types, and seasons.

Effect of riparian vegetation on diatom assemblages in headwater streams under different land uses

Differences in the structure of diatom assemblages in headwaters with contrasting shading conditions and different land use in the buffer zone and upper catchment were studied in order to evaluate the influence of the lack of riparian vegetation on the biofilm. The objective was to ascertain whether a riparian buffer can mitigate the negative influence of human induced disturbance and pollution on diatom assemblages in headwaters. Four streams were selected in order to maximize the differences in the land cover and minimize other environmental gradients. Multivariate statistics, different comparative and permutation tests and correlations were applied to compare the diatom assemblages, the Specific Polluosensitivity Index (IPS) and the diatom ecological guilds (low profile, high profile and motile) among the sites studied and to evaluate their responses to disturbances. The analysis showed that low profile diatoms typically dominated in forested headwaters with limited resources, whilst assemblages at impacted sites showed a wider range of growth forms. In unimpacted streams, the diatom assemblages were influenced by temperature, pH, conductivity and calcium, as usually reported for oligotrophic streams with high natural disturbance due to fast current and shading. In both shaded and unshaded impacted streams, the importance of nutrients and land use disturbance, especially urbanization, prevailed. This trend was also reflected by the IPS index that showed consistently lower values at impacted sites, correlating most significantly with nutrients. The diatom species composition as well as diatom guilds at impacted sites were similar, regardless of the presence or absence of riparian vegetation, and were significantly influenced by seasonal changes. Our results indicate that diatoms react sensitively to alterations of the water environment in headwaters, induced by anthropogenic activities, and these impacts are not buffered by an intact riparian zone. Diatoms closely reflected land use practices in the upper catchment regardless of the buffer zone status.

Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments

The contamination of groundwater with mercury (Hg) is an increasing problem worldwide. Yet, little is known about the interactions of Hg with microorganisms and their processes in subsurface environments. We tested the impact of Hg on denitrification in nitrate reducing enrichment cultures derived from subsurface sediments from the Oak Ridge Integrated Field Research Challenge site, where nitrate is a major contaminant and where bioremediation efforts are in progress. We observed an inverse relationship between Hg concentrations and onset and rates of denitrification in nitrate enrichment cultures containing between 53 and 1.1 μM of inorganic Hg; higher Hg concentrations increasingly extended the time to onset of denitrification and inhibited denitrification rates. Microbial community complexity, as indicated by terminal restriction fragment length polymorphism (tRFLP) analysis of the 16S rRNA genes, declined with increasing Hg concentrations; at the 312 nM Hg treatment, a single tRFLP peak was detected representing a culture of Bradyrhizobium sp. that possessed the merA gene indicating a potential for Hg reduction. A culture identified as Bradyrhizobium sp. strain FRC01 with an identical 16S rRNA sequence to that of the enriched peak in the tRFLP patterns, reduced Hg(II) to Hg(0) and carried merA whose amino acid sequence has 97 % identity to merA from the Proteobacteria and Firmicutes. This study demonstrates that in subsurface sediment incubations, Hg may inhibit denitrification and that inhibition may be alleviated when Hg resistant denitrifying Bradyrhizobium spp. detoxify Hg by its reduction to the volatile elemental form.

Floodplain restoration enhances denitrification and reach-scale nitrogen removal in an agricultural stream

Streams of the agricultural Midwest, USA, export large quantities of nitrogen, which impairs downstream water quality, most notably in the Gulf of Mexico. The two-stage ditch is a novel restoration practice, in which floodplains are constructed alongside channelized ditches. During high flows, water flows across the floodplains, increasing benthic surface area and stream water residence time, as well as the potential for nitrogen removal via denitrification. To determine two-stage ditch nitrogen removal efficacy, we measured denitrification rates in the channel and on the floodplains of a two-stage ditch in north-central Indiana for one year before and two years after restoration. We found that instream rates were similar before and after the restoration, and they were influenced by surface water NO3- concentration and sediment organic matter content. Denitrification rates were lower on the constructed floodplains and were predicted by soil exchangeable NO3- concentration. Using storm flow simulations, we found that two-stage ditch restoration contributed significantly to NO3- removal during storm events, but because of the high NO3- loads at our study site, < 10% of the NO3- load was removed under all storm flow scenarios. The highest percentage of NO3- removal occurred at the lowest loads; therefore, the two-stage ditch's effectiveness at reducing downstream N loading will be maximized when the practice is coupled with efforts to reduce N inputs from adjacent fields.

Sedimentary environment influences the effect of an infaunal suspension feeding bivalve on estuarine ecosystem function

The suspension feeding bivalve Austrovenus stutchburyi is a key species on intertidal sandflats in New Zealand, affecting the appearance and functioning of these systems, but is susceptible to several environmental stressors including sedimentation. Previous studies into the effect of this species on ecosystem function have been restricted in space and time, limiting our ability to infer the effect of habitat change on functioning. We examined the effect of Austrovenus on benthic primary production and nutrient dynamics at two sites, one sandy, the other composed of muddy-sand to determine whether sedimentary environment alters this key species' role. At each site we established large (16 m²) plots of two types, Austrovenus addition and removal. In winter and summer we deployed light and dark benthic chambers to quantify oxygen and nutrient fluxes and measured sediment denitrification enzyme activity to assess denitrification potential. Rates of gross primary production (GPP) and ammonium uptake were significantly increased when Austrovenus was added, relative to removed, at the sandy site (GPP, 1.5 times greater in winter and summer; ammonium uptake, 8 times greater in summer; 3-factor analysis of variance (ANOVA), p<0.05). Denitrification potential was also elevated in Austrovenus addition plots at the sandy site in summer (by 1.6 times, p<0.1). In contrast, there was no effect of Austrovenus treatment on any of these variables at the muddy-sand site, and overall rates tended to be lower at the muddy-sand site, relative to the sandy site (e.g. GPP was 2.1 to 3.4 times lower in winter and summer, respectively, p<0.001). Our results suggest that the positive effects of Austrovenus on system productivity and denitrification potential is limited at a muddy-sand site compared to a sandy site, and reveal the importance of considering sedimentary environment when examining the effect of key species on ecosystem function.

Denitrification mitigates N flux through the stream-floodplain complex of a desert city

The Indian Bend Wash (IBW) flood-control project relies on a greenbelt to carry floods through Scottsdale, Arizona, USA. The greenbelt is characterized by a chain of shallow artificial lakes in a larger floodplain of irrigated turf, which has been protected from encroaching urban development. As such, this urban stream-floodplain complex can be divided into three subsystems: artificial lakes, channelized stream segments, and floodplain. We conducted experiments to evaluate which, if any, of these subsystems were important sites of denitrification, and to explore factors controlling denitrification rates. Denitrification enzyme activity (DEA) bioassays were conducted on sediments from eight lake and six stream segments as well as soil samples from eight floodplain transects. Mass-specific potential denitrification rates were significantly higher in lakes than in streams or floodplains. Nutrient limitation bioassays revealed that nitrate (NO3-) limited denitrification in lake sediments, a surprising finding given that NO3(-)-rich groundwater additions frequently raised lake NO3(-) concentration above 1 mg N/L. Experiments on intact lake cores suggested that denitrification was limited by the rate NO3(-) diffused into sediments, rather than its availability in overlying water. Floodplain denitrification was limited by water content, not NO3(-) or C, and irrigation of soils stimulated denitrification. We constructed a N budget for the IBW stream-floodplain complex based on our experimental results. We found that both lakes and floodplains removed large quantities of N, with denitrification removing 261 and 133 kg N ha(-1) yr(-1) from lake sediments and floodplain soils, respectively, indicating that lakes are hotspots for denitrification. Nevertheless, because floodplain area was >4.5 times that of lakes, floodplain soils removed nearly 2.5 times as much N as lake sediments. Given the desert's low annual precipitation, a finding that floodplain soils are active sites of denitrification might seem implausible; however, irrigation is common in urban landscapes, and it elevated annual denitrification in IBW. Based on our results, we conclude that construction of artificial lakes created hotspots while application of irrigation water created hot moments for denitrification in the stream-floodplain complex, demonstrating that management decisions can improve the ability of urban streams to provide critical ecosystem services like N retention.

Urban stormwater runoff drives denitrifying community composition through changes in sediment texture and carbon content

The export of nitrogen from urban catchments is a global problem, and denitrifying bacteria in stream ecosystems are critical for reducing in-stream N. However, the environmental factors that control the composition of denitrifying communities in streams are not well understood. We determined whether denitrifying community composition in sediments of nine streams on the eastern fringe of Melbourne, Australia was correlated with two measures of catchment urban impact: effective imperviousness (EI, the proportion of a catchment covered by impervious surfaces with direct connection to streams) or septic tank density (which affects stream water chemistry, particularly stream N concentrations). Denitrifying community structure was examined by comparing terminal restriction fragment length polymorphisms of nosZ genes in the sediments, as the nosZ gene codes for nitrous oxide reductase, the last step in the denitrification pathway. We also determined the chemical and physical characteristics of the streams that were best correlated with denitrifying community composition. EI was strongly correlated with community composition and sediment physical and chemical properties, while septic tank density was not. Sites with high EI were sandier, with less fine sediment and lower organic carbon content, higher sediment cations (calcium, sodium and magnesium) and water filterable reactive phosphorus concentrations. These were also the best small-scale environmental variables that explained denitrifying community composition. Among our study streams, which differed in the degree of urban stormwater impact, sediment grain size and carbon content are the most likely drivers of change in community composition. Denitrifying community composition is another in a long list of ecological indicators that suggest the profound degradation of streams is caused by urban stormwater runoff. While the relationships between denitrifying community composition and denitrification rates are yet to be unequivocally established, landscape-scale indices of environmental impact such as EI may prove to be useful indicators of change in microbial communities.

Distribution of nonprescription pharmaceuticals in central Indiana streams and effects on sediment microbial activity

Since the discovery of trace concentrations of pharmaceuticals in streams and treated drinking water around the world, a call has been made by both the scientific community and the general public to increase understanding of the potential effects these compounds may have on freshwater integrity. We measured abundance and distribution of pharmaceuticals in headwater streams across the Upper White River Watershed of central Indiana. Four nonprescription pharmaceuticals (1,7-dimethylxanthine, caffeine metabolite; acetaminophen; caffeine; cotinine, nicotine metabolite) were found at one or more sites with mean concentrations of 0.038, 0.109, 0.057 and 0.041 μg/l, respectively. Caffeine was measured at trace concentrations at all sites sampled. Higher pharmaceutical concentrations were associated with streams having >90% agricultural land use in the sub watershed, suggesting that nonpoint sources, such as septic tanks, may contribute to stream pharmaceutical contamination. To assess the influence of these pharmaceuticals on stream microbial activity, we measured changes in sediment respiration and nutrient uptake in response to pharmaceuticals using both in vitro and in situ techniques. For in vitro experiments, respiration rates were not significantly different from controls with pharmaceutical exposure. However, net NO(3) (-)-N uptake increased significantly with nicotine concentrations. Net NH(4)(+)-N uptake was reduced in response to caffeine and nicotine exposure. In situ experiments indicated nicotine exposure increased microbial respiration. Our data show pharmaceuticals are ubiquitous in headwater streams of central Indiana and likely influence stream microbial activity depending on the pharmaceutical compound and history of exposure.

Denitrification of nitrogen released from senescing algal biomass in coastal agricultural headwater streams

Assimilation of inorganic N by photoautotrophs has positive impacts on nutrient retention; however this retention is only temporary. As the biomass senesces, organic and inorganic forms of N are released back to the stream where they can be further transformed (i.e., nitrification, denitrification) or exported downstream. The purpose of this study was to assess the fate of the remineralized N, particularly the potential for removal by denitrification. Experiments were conducted on intact sediment cores from streams in an agricultural watershed. Cores were amended with varying ages of algal leachate and denitrification rates were measured with a membrane inlet mass spectrometer. Results of this study demonstrated that senescing algal biomass stimulated denitrification rates and provided a source of N and labile C to denitrifiers. Regardless of leachate age, addition of leachate to intact cores revealed a net loss of dissolved inorganic N from the water column. Denitrification rates were most strongly related to concentrations of dissolved and particulate C in the overlying water and secondarily to C quality (molar C to N ratio of total dissolved C and N) and NO(3)(-) flux. Using a mass balance approach, the proportion of N from senescing algal biomass that was denitrified accounted for as much as 10% of the total dissolved nitrogen (TDN) and up to 100% of the NO(3)(-) during a 3-h experiment. These results suggest an important link between instream algal uptake and eventual denitrification thereby providing a pathway for permanent removal of watershed-derived N from the stream ecosystem.

The effects of season and agriculture on nitrous oxide production in headwater streams

Streams and rivers are a globally significant source of nitrous oxide (N(2)O), a potent greenhouse gas. However, there remains much uncertainty in the magnitude of N(2)O emissions from these sources, partly due to an incomplete understanding of the factors that control microbial N(2)O production in lotic sediments. During 2004-2005 we measured sediment N(2)O production in 12 headwater streams across an agricultural land use gradient. Stream water nitrate (NO(3)(-)) concentrations were positively related to the proportion of agricultural land use in the basin and frequently exceeded 20 mg N L(-1) in the stream draining the most agricultural basin. Stream sediments were nearly always a net source of N(2)O, and production rates were positively related to stream water NO(3)(-) concentrations and sediment carbon content. There were no seasonal patterns in N(2)O production rates during 2004, but stream water NO(3)(-) and N(2)O production both peaked during the winter of 2005. The spike in NO(3)(-) concentrations likely resulted from winter rain and snowmelt that flushed NO(3)(-) from the soils following a dry summer and fall. In turn, the elevated stream water NO(3)(-) concentrations stimulated in-stream N(2)O production rates. Overall, we were only able to explain 29% of the variation in N(2)O production rates on a log scale. The unexplained variation may be due to differences in the fraction of denitrified NO(3)(-) that is converted to N(2)O among the study sites, or that our measures of substrate availability in the water column were not reflective of substrate availability in the porewater used by denitrifiers.

Whole-stream response to nitrate loading in three streams draining agricultural landscapes

Physical, chemical, hydrologic, and biologic factors affecting nitrate (NO3(-)) removal were evaluated in three agricultural streams draining orchard/dairy and row crop settings. Using 3-d "snapshots" during biotically active periods, we estimated reach-level NO3(-) sources, NO3(-) mass balance, in-stream processing (nitrification, denitrification, and NO3(-) uptake), and NO3(-) retention potential associated with surface water transport and ground water discharge. Ground water contributed 5 to 11% to stream discharge along the study reaches and 8 to 42% of gross NO3(-) input. Streambed processes potentially reduced 45 to 75% of ground water NO3(-) before discharge to surface water. In all streams, transient storage was of little importance for surface water NO3(-) retention. Estimated nitrification (1.6-4.4 mg N m(-2) h(-1)) and unamended denitrification rates (2.0-16.3 mg N m(-2) h(-1)) in sediment slurries were high relative to pristine streams. Denitrification of NO3(-) was largely independent of nitrification because both stream and ground water were sources of NO3(-). Unamended denitrification rates extrapolated to the reach-scale accounted for <5% of NO3(-) exported from the reaches minimally reducing downstream loads. Nitrate retention as a percentage of gross NO3(-) inputs was >30% in an organic-poor, autotrophic stream with the lowest denitrification potentials and highest benthic chlorophyll a, photosynthesis/respiration ratio, pH, dissolved oxygen, and diurnal NO3(-) variation. Biotic processing potentially removed 75% of ground water NO3(-) at this site, suggesting an important role for photosynthetic assimilation of ground water NO3(-) relative to subsurface denitrification as water passed directly through benthic diatom beds.

Factors controlling sediment denitrification in midwestern streams of varying land use

We investigated controls on stream sediment denitrification in nine headwater streams in the Kalamazoo River Watershed, Michigan, USA. Factors influencing denitrification were determined by using experimental assays based on the chloramphenicol-amended acetylene inhibition technique. Using a coring technique, we found that sediment denitrification was highest in the top 5 cm of the benthos and was positively related to sediment organic content. To determine the effect of overlying water quality on sediment denitrification, first-order stream sediments were assayed with water from second- and third-order downstream reaches, and often showed higher denitrification rates relative to assays using site-specific water from the first-order stream reach. Denitrification was positively related to nitrate (NO3 ) concentration, suggesting that sediments may have been nutrient-limited. Using stream-incubated inorganic substrata of varying size classes, we found that finer-grained sand showed higher rates of denitrification compared to large pebbles, likely due to increased surface area per volume of substratum. Denitrification was measurable on both inorganic substrata and fine particulate organic matter loosely associated with inorganic particles, and denitrification rates were related to organic content. Using nutrient-amended denitrification assays, we found that sediment denitrification was limited by NO3- or dissolved organic carbon (DOC, as dextrose) variably throughout the year. The frequency and type of limitation differed with land use in the watershed: forested streams were NO3- -limited or colimited by both NO3- and DOC 92% of the time, urban streams were more often NO3- -limited than DOC-limited, whereas agricultural stream sediments were DOC-limited or co-limited but not frequently limited by NO3- alone.

Denitrification and the nitrogen budget of a reservoir in an agricultural landscape

Denitrification is an important process in aquatic sediments, but its role has not been assessed in the N mass balance of upper-Midwestern (USA) reservoirs that receive large agricultural riverine N inputs. We used a 4400-ha reservoir to determine the role of denitrification in the N mass balance and effectiveness in reducing downstream transport of NO(3-)N. Sediment denitrification was (1) measured monthly (March 2002-March 2003) at eight sites in the Lake Shelbyville reservoir in central Illinois using the acetylene inhibition, chloramphenicol technique, (2) scaled to the overall reservoir and compared to N not accounted for in a mass balance, and (3) estimated indirectly using long-term (1981-2003) mass balances of N in the reservoir. Denitrification rates in the reservoir were high during spring and early summer of 2002, when maximum NO(3-)N concentrations were measured (10-14 mg NO(3-)N/L). We estimated that denitrification for the year was between 2580 and 5150 Mg N. Missing N from the mass balance was 3004 Mg N, suggesting that sediment denitrification was the sink. Areal rates of sediment denitrification in the reservoir ranged from 62 to 225 g N x m(-2) x yr(-1), with rates a function of both denitrification intensity (microg N x g dry mass x h(-1)) and the overall mass of sediment present. From 1981 to 2003 the average NO(3-)N inlet flux was 8900 Mg N/yr. About 58% of the total NO(3-)N input was removed, and annual NO(3-)N removed as a percentage of inputs was significantly related to reservoir retention time (average = 0.36 yr for the 23 years, range = 0.21-0.84 yr). By scaling denitrification in Lake Shelbyville to other reservoirs in Illinois, we estimated a sink of 48900 Mg N/yr. When combined with estimated in-stream denitrification, 60900 Mg N/yr was estimated to be removed by sediment denitrification. This reduces riverine export from Illinois to the Gulf of Mexico, where the flux during the 1990s was about 244000 Mg N/yr, and illustrates the importance of reservoir denitrification as an N sink in Midwestern agricultural landscapes.

Influence of geomorphological variability in channel characteristics on sediment denitrification in agricultural streams

Within fluvial systems, the spatial variability of geomorphological characteristics of stream channels and associated streambed properties can affect many biogeochemical processes. In agricultural streams of the midwestern USA, it is not known how geomorphological variability affects sediment denitrification rates, a potentially important loss mechanism for N. Sediment denitrification was measured at channelized and meandering headwater reaches in east-central Illinois, a region dominated by intensive agriculture and high NO(3)-N stream export, between June 2003 and February 2005 using the chloramphenicol-amended acetylene inhibition procedure. Sediment denitrification rates were greatest in separation zones, ranging from 0.6 to 76.4 mg N m(-2) h(-1), compared with riffles, point bars, pools, and a run ranging from 0 to 36.5 mg N m(-2) h(-1). Differences in benthic organic matter (r = 0.70) and the percentage of fine-grained sediments (r = 0.93) in the streambeds controlled much of the spatial variations in sediment denitrification among the geomorphological features. Although two meandering study reaches removed 390 and 99% more NO(3)-N by sediment denitrification than adjacent channelized reaches, NO(3)-N loss rates from all reaches were between 0.1 and 15.7% d(-1), except in late summer. Regardless of geomorphological characteristics, streams in east-central Illinois were not able to process the high NO(3)-N loads, making sediment denitrification in this region a limited sink for N.