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Shinkai T, Takizawa S, Enishi O, Higuchi K, Ohmori H, Mitsumori M. Characteristics of rumen microbiota and Prevotella isolates found in high propionate and low methane-producing dairy cows. Front Microbiol 2024; 15:1404991. [PMID: 38887715 PMCID: PMC11180796 DOI: 10.3389/fmicb.2024.1404991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 05/21/2024] [Indexed: 06/20/2024] Open
Abstract
Ruminal methane production is the main sink for metabolic hydrogen generated during rumen fermentation, and is a major contributor to greenhouse gas (GHG) emission. Individual ruminants exhibit varying methane production efficiency; therefore, understanding the microbial characteristics of low-methane-emitting animals could offer opportunities for mitigating enteric methane. Here, we investigated the association between rumen fermentation and rumen microbiota, focusing on methane production, and elucidated the physiological characteristics of bacteria found in low methane-producing cows. Thirteen Holstein cows in the late lactation stage were fed a corn silage-based total mixed ration (TMR), and feed digestion, milk production, rumen fermentation products, methane production, and rumen microbial composition were examined. Cows were classified into two ruminal fermentation groups using Principal component analysis: low and high methane-producing cows (36.9 vs. 43.2 L/DMI digested) with different ruminal short chain fatty acid ratio [(C2+C4)/C3] (3.54 vs. 5.03) and dry matter (DM) digestibility (67.7% vs. 65.3%). However, there were no significant differences in dry matter intake (DMI) and milk production between both groups. Additionally, there were differences in the abundance of OTUs assigned to uncultured Prevotella sp., Succinivibrio, and other 12 bacterial phylotypes between both groups. Specifically, a previously uncultured novel Prevotella sp. with lactate-producing phenotype was detected, with higher abundance in low methane-producing cows. These findings provide evidence that Prevotella may be associated with low methane and high propionate production. However, further research is required to improve the understanding of microbial relationships and metabolic processes involved in the mitigation of enteric methane.
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Affiliation(s)
- Takumi Shinkai
- Division of Dairy Cattle Feeding and Breeding Research, Institute of Livestock and Grassland Science, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
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2
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Roques S, Martinez-Fernandez G, Ramayo-Caldas Y, Popova M, Denman S, Meale SJ, Morgavi DP. Recent Advances in Enteric Methane Mitigation and the Long Road to Sustainable Ruminant Production. Annu Rev Anim Biosci 2024; 12:321-343. [PMID: 38079599 DOI: 10.1146/annurev-animal-021022-024931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
Mitigation of methane emission, a potent greenhouse gas, is a worldwide priority to limit global warming. A substantial part of anthropogenic methane is emitted by the livestock sector, as methane is a normal product of ruminant digestion. We present the latest developments and challenges ahead of the main efficient mitigation strategies of enteric methane production in ruminants. Numerous mitigation strategies have been developed in the last decades, from dietary manipulation and breeding to targeting of methanogens, the microbes that produce methane. The most recent advances focus on specific inhibition of key enzymes involved in methanogenesis. But these inhibitors, although efficient, are not affordable and not adapted to the extensive farming systems prevalent in low- and middle-income countries. Effective global mitigation of methane emissions from livestock should be based not only on scientific progress but also on the feasibility and accessibility of mitigation strategies.
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Affiliation(s)
- Simon Roques
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, Saint-Genes-Champanelle, France; , ,
| | | | - Yuliaxis Ramayo-Caldas
- Animal Breeding and Genetics Program, Institute of Agrifood Research and Technology (IRTA), Torre Marimon, Caldes de Montbui, Spain;
| | - Milka Popova
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, Saint-Genes-Champanelle, France; , ,
| | - Stuart Denman
- Agriculture and Food, CSIRO, St. Lucia, Queensland, Australia; ,
| | - Sarah J Meale
- School of Agriculture and Food Sustainability, Faculty of Science, University of Queensland, Gatton, Queensland, Australia;
| | - Diego P Morgavi
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, Saint-Genes-Champanelle, France; , ,
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3
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Sarmikasoglou E, Sumadong P, Roesch LFW, Halima S, Arriola K, Yuting Z, Jeong KCC, Vyas D, Hikita C, Watanabe T, Faciola A. Effects of cashew nut shell extract and monensin on in vitro ruminal fermentation, methane production, and ruminal bacterial community. J Dairy Sci 2024; 107:840-856. [PMID: 37730175 DOI: 10.3168/jds.2023-23669] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 08/23/2023] [Indexed: 09/22/2023]
Abstract
The objective of this study was to evaluate the effects of cashew nut shell extract (CNSE) and monensin on ruminal in vitro fermentation, CH4 production, and ruminal bacterial community structure. Treatments were as follows: control (CON, basal diet without additives); 2.5 μM monensin (MON); 0.1 mg CNSE granule/g DM (CNSE100); and 0.2 mg CNSE granule/g DM (CNSE200). Each treatment was incubated with 52 mL of buffered ruminal content and 500 mg of total mixed ration for 24 h using serum vials. The experiment was performed as a complete randomized block design with 3 runs. Run was used as a blocking factor. Each treatment had 5 replicates, in which 2 were used to determine nutrient degradability, and 3 were used to determine pH, NH3-N, volatile fatty acids, lactate, total gas, CH4 production, and bacterial community composition. Treatment responses for all data, excluding bacterial abundance, were analyzed with the GLIMMIX procedure of SAS v9.4. Treatment responses for bacterial community structure were analyzed with a PERMANOVA test run with the R package vegan. Orthogonal contrasts were used to test the effects of (1) additive inclusion (ADD: CON vs. MON, CNSE100, and CNSE200); (2) additive type (MCN: MON vs. CNSE100 and CNSE200); and (3) CNSE dose (DOS: CNSE100 vs. CNSE200). We observed that pH, acetate, and acetate:propionate ratio in the CNSE100 treatment were lower compared with CNSE200, and propionate in the CNSE100 treatment was greater compared with CNSE200. Compared with MON, CNSE treatments tended to decrease total lactate concentration. Total gas production of CON was greater by 2.63% compared with all treatments, and total CH4 production was reduced by 10.64% in both CNSE treatments compared with MON. Also, compared with MON, in vitro dry matter degradabilities in CNSE treatments were lower. No effects were observed for NH3-N or in vitro neutral detergent fiber degradability. Finally, the relative abundances of Prevotella, Treponema, and Schwartzia were lower, whereas the relative abundances of Butyrivibrio and Succinivibrio were greater in all treatments compared with CON. Overall, the inclusion of CNSE decreased CH4 production compared with MON, making CNSE a possible CH4 mitigation additive in dairy cattle diets.
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Affiliation(s)
- E Sarmikasoglou
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - P Sumadong
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611; Department of Animal Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | - L F W Roesch
- Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32603
| | - S Halima
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - K Arriola
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - Z Yuting
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - K C C Jeong
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - D Vyas
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - C Hikita
- SDS Biotech K.K., Tokyo, Japan 101-0022
| | | | - A Faciola
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611.
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Shinkai T, Takizawa S, Fujimori M, Mitsumori M. - Invited Review - The role of rumen microbiota in enteric methane mitigation for sustainable ruminant production. Anim Biosci 2024; 37:360-369. [PMID: 37946422 PMCID: PMC10838666 DOI: 10.5713/ab.23.0301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 09/13/2023] [Accepted: 10/11/2023] [Indexed: 11/12/2023] Open
Abstract
Ruminal methane production functions as the main sink for metabolic hydrogen generated through rumen fermentation and is recognized as a considerable source of greenhouse gas emissions. Methane production is a complex trait affected by dry matter intake, feed composition, rumen microbiota and their fermentation, lactation stage, host genetics, and environmental factors. Various mitigation approaches have been proposed. Because individual ruminants exhibit different methane conversion efficiencies, the microbial characteristics of low-methane-emitting animals can be essential for successful rumen manipulation and environment-friendly methane mitigation. Several bacterial species, including Sharpea, uncharacterized Succinivibrionaceae, and certain Prevotella phylotypes have been listed as key players in low-methane-emitting sheep and cows. The functional characteristics of the unclassified bacteria remain unclear, as they are yet to be cultured. Here, we review ruminal methane production and mitigation strategies, focusing on rumen fermentation and the functional role of rumen microbiota, and describe the phylogenetic and physiological characteristics of a novel Prevotella species recently isolated from low methane-emitting and high propionate-producing cows. This review may help to provide a better understanding of the ruminal digestion process and rumen function to identify holistic and environmentally friendly methane mitigation approaches for sustainable ruminant production.
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Affiliation(s)
- Takumi Shinkai
- NARO Institute of Livestock and Grassland Science, Ibaraki 305-0901,
Japan
| | - Shuhei Takizawa
- NARO Institute of Livestock and Grassland Science, Ibaraki 305-0901,
Japan
| | - Miho Fujimori
- NARO Institute of Livestock and Grassland Science, Ibaraki 305-0901,
Japan
| | - Makoto Mitsumori
- NARO Institute of Livestock and Grassland Science, Ibaraki 305-0901,
Japan
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Sarmikasoglou E, Sumadong P, Roesch LF, Halima S, Hikita C, Watanabe T, Faciola A. Effects of monensin and cashew nut-shell extract on bacterial community composition in a dual-flow continuous culture system. Transl Anim Sci 2023; 8:txad148. [PMID: 38221956 PMCID: PMC10787353 DOI: 10.1093/tas/txad148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 12/20/2023] [Indexed: 01/16/2024] Open
Abstract
The objective of this study was to evaluate the effects of including monensin and two doses of CNSE in a high producing dairy cow diet on ruminal bacterial communities. A dual-flow continuous culture system was used in a replicated 4 × 4 Latin Square design. A basal diet was formulated to meet the requirements of a cow producing 45 kg of milk per d (17% crude protein and 27% starch). There were four experimental treatments: the basal diet without any feed additive (CON), 2.5 μM monensin (MON), 100 ppm CNSE granule (CNSE100), and 200 ppm CNSE granule (CNSE200). Samples were collected from the fluid and solid effluents at 3, 6, and 9 h after feeding; a composite of all time points was made for each fermenter within their respective fractions. Bacterial community composition was analyzed by sequencing the V4 region of the 16S rRNA gene using the Illumina MiSeq platform. Treatment responses for bacterial community structure were analyzed with the PERMANOVA test run with the R Vegan package. Treatment responses for correlations were analyzed with the CORR procedure of SAS. Orthogonal contrasts were used to test the effects of (1) ADD (CON vs. MON, CNSE100, and CNSE200); (2) MCN (MON vs. CNSE100 and CNSE200); and (3) DOSE (CNSE100 vs. CNSE200). Significance was declared at P ≤ 0.05. We observed that the relative abundance of Sharpea (P < 0.01), Mailhella (P = 0.05), Ruminococcus (P = 0.03), Eubacterium (P = 0.01), and Coprococcus (P < 0.01) from the liquid fraction and the relative abundance of Ruminococcus (P = 0.03) and Catonella (P = 0.02) from the solid fraction decreased, while the relative abundance of Syntrophococcus (P = 0.02) increased in response to MON when compared to CNSE treatments. Our results demonstrate that CNSE and monensin have similar effects on the major ruminal bacterial genera, while some differences were observed in some minor genera. Overall, the tested additives would affect the ruminal fermentation in a similar pattern.
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Affiliation(s)
- Efstathios Sarmikasoglou
- Department of Animal Science, Michigan State University, East Lansing, MI 48824, USA
- Department of Animal Sciences, University of Florida, Gainesville, 32611 FL, USA
| | - Phussorn Sumadong
- Department of Animal Sciences, University of Florida, Gainesville, 32611 FL, USA
- Department of Animal Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Luiz Fernando Roesch
- Department of Microbiology and Cell Science, University of Florida, Gainesville, 32603 FL, USA
| | - Sultana Halima
- Department of Animal Sciences, University of Florida, Gainesville, 32611 FL, USA
| | - Chie Hikita
- Product Development Department, SDS Biotech K.K., Tokyo 101-0022, Japan
| | - Tomonori Watanabe
- Product Development Department, SDS Biotech K.K., Tokyo 101-0022, Japan
| | - Antonio P Faciola
- Department of Animal Sciences, University of Florida, Gainesville, 32611 FL, USA
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Mei S, He G, Chen Z, Zhang R, Liao Y, Zhu M, Xu D, Shen Y, Zhou B, Wang K, Wang C, Zhu E, Chen C. Probiotic-Fermented Distillers Grain Alters the Rumen Microbiome, Metabolome, and Enzyme Activity, Enhancing the Immune Status of Finishing Cattle. Animals (Basel) 2023; 13:3774. [PMID: 38136811 PMCID: PMC10740804 DOI: 10.3390/ani13243774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 11/28/2023] [Accepted: 12/05/2023] [Indexed: 12/24/2023] Open
Abstract
A total of 30 Simmental crossbred cattle (6.50 months old, 265.0 ± 22.48 kg) were randomly divided into three groups, with 10 heads per group, and fed for 45 days. The diet treatments consisted of the Control group without PFDG supplementation, the PFDG-15% group with 15% PFDG substituting for 15% concentrate, and PFDG-30% group with 30% PFDG substituting for 30% concentrate. The results showed that compared with the Control group, the average daily gain (ADG) of the cattle in the PFDG-30% group decreased significantly (0.890 vs. 0.768 kg/d, p = 0.005). The serum malondialdehyde content of cattle in the PFDG-15% and PFDG-30% groups decreased significantly (p = 0.047) compared to that of the Control group. However, the serum superoxide dismutase activity of cattle in the PFDG-30% group was significantly higher than that of the Control group (p = 0.047). Meanwhile, both the PFDG-15% and PFDG-30% groups (1758.47 vs. 2061.30 μg/mL) showed higher serum levels of immunoglobulin G, while the interleukin-10 concentration was lower in the PFDG-30% group (p = 0.027). In addition, the PFDG-15% and PFDG-30% groups shifted the rumen microbiota by improving the abundances of F082 (related to propionic acid production) and fiber-degrading bacteria (Lachnospiraceae_UGG-009 and Prevotellaceae_UCG-001) and reducing the abundance of the disease-associated bacteria Selenomonas. A Kyoto encyclopedia of genes and genomes (KEGG) analysis illustrated that three key metabolic pathways, including phenylalanine metabolism, pyrimidine metabolism, and tryptophan metabolism, were enriched in the PFDG-15% group, but eight key metabolic pathways, including arachidonic acid metabolism, were enriched in the PFDG-30% group. Importantly, both the PFDG-15% and PFDG-30% groups increased (p < 0.01) the activities of cellulase, lipase, and protease in the rumen. Finally, the different bacterial abundance in the rumen was associated with changes in the ADG, serum antioxidant capacity, immune status, rumen enzyme activity, and metabolites. These results suggest that PFDG alters rumen microbiome abundance, metabolome, and enzyme activity for enhancing serum antioxidant capacity and the immune status, but when the supplemental level reaches 30%, it has a negative effect on ADG and the anti-inflammatory factors in finishing cattle.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | | | - Chao Chen
- College of Animal Science, Guizhou University, Guiyang 550025, China; (S.M.); (G.H.); (Z.C.); (R.Z.); (Y.L.); (M.Z.); (D.X.); (Y.S.); (B.Z.); (K.W.); (C.W.); (E.Z.)
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7
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Goetz BM, Horst EA, Mayorga EJ, Abeyta MA, Rodriguez-Jimenez S, Carta S, Lourenco JM, Callaway TR, Hikita C, Watanabe T, Baumgard LH. Effects of cashew nut shell extract supplementation on production, rumen fermentation, metabolism, and inflammatory biomarkers in transition dairy cows. J Dairy Sci 2023; 106:9843-9854. [PMID: 37641319 DOI: 10.3168/jds.2023-23563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 06/22/2023] [Indexed: 08/31/2023]
Abstract
Cashew nut shell extract (CNSE) is a byproduct of the cashew nut industry, containing bioactive compounds that alter rumen fermentation patterns. Therefore, study objectives were to evaluate the effects of CNSE (59% anacardic acid and 18% cardol) on production, rumen fermentation variables, metabolism, and inflammation in transition dairy cows. A total of 51 multiparous Holstein cows were used in a randomized design and assigned to treatment based on their previous 305-d mature equivalent milk and parity. Cows were assigned to 1 of 2 treatments 21 d before expected calving: (1) CON (control diet; n = 17) or (2) CNSE-5.0 (control diet and 5.0 g/d CNSE granule [containing 50% CNSE]; n = 34). Following parturition, 17 cows (preselected at initial treatment assignment) from the CNSE-5.0 treatment were reallocated into a third treatment group: CNSE-2.5 (control diet and 2.5 g/d CNSE granule; n = 17), resulting in 3 total treatments postpartum: (1) CON, (2) CNSE-2.5, and (3) CNSE-5.0. Prepartum rumen pH was unaltered by treatment; however, postpartum rumen pH was increased (0.31 units) in CNSE cows relative to CON. Prepartum rumen ammonia N concentration tended to be decreased (34%) in CNSE-5.0 cows compared with CON, and there tended to be a quadratic effect on postpartum ammonia N, as it was decreased in CNSE-2.5 compared with CON and CNSE-5.0. Prepartum dry matter intake (DMI) was unaffected by treatment; however, postpartum DMI was increased (8%) in CNSE cows relative to CON. No treatment differences were observed in pre- or postpartum digestibility measurements. Milk and protein yields from cows fed CNSE tended to be increased (6% and 7%, respectively) relative to CON. No treatment differences were detected for energy-corrected milk, feed efficiency, body weight, body condition score, energy balance, milk composition, milk urea nitrogen, or somatic cell count. Prepartum fecal pH decreased (0.12 units) in CNSE-5.0 cows relative to CON cows but was similar between treatments postpartum. Supplementing CNSE did not affect prepartum glucose, nonesterified fatty acids (NEFA), β-hydroxybutyrate (BHB), or insulin. However, prepartum circulating blood urea nitrogen tended to be decreased and glucagon was decreased in CNSE-5.0 cows compared with CON (9 and 20%, respectively). Additionally, CNSE supplementation decreased glucose and insulin concentrations postpartum relative to CON cows (6% and 20%, respectively). Quadratic effects were detected for postpartum circulating NEFA and BHB such that their levels were increased in CNSE-2.5 cows relative to CON and CNSE-5.0. Pre- and postpartum circulating serum amyloid A, lipopolysaccharide-binding protein, and haptoglobin were unaffected by treatment. Overall, CNSE influenced some key rumen fermentation variables, altered postabsorptive metabolism, and increased production parameters in transition dairy cows.
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Affiliation(s)
- B M Goetz
- Department of Animal Science, Iowa State University, Ames, IA 50011
| | - E A Horst
- Department of Animal Science, Iowa State University, Ames, IA 50011
| | - E J Mayorga
- Department of Animal Science, Iowa State University, Ames, IA 50011
| | - M A Abeyta
- Department of Animal Science, Iowa State University, Ames, IA 50011
| | | | - S Carta
- Department of Animal Science, Iowa State University, Ames, IA 50011
| | - J M Lourenco
- Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602
| | - T R Callaway
- Department of Animal and Dairy Science, University of Georgia, Athens, GA 30602
| | - C Hikita
- SDS Biotech K.K., Tokyo, Japan 101-0022
| | | | - L H Baumgard
- Department of Animal Science, Iowa State University, Ames, IA 50011.
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Sarmikasoglou E, Johnson ML, Vinyard JR, Sumadong P, Lobo RR, Arce-Cordero JA, Bahman A, Ravelo A, Halima S, Salas-Solis GK, Hikita C, Watanabe T, Faciola AP. Effects of cashew nutshell extract and monensin on microbial fermentation in a dual-flow continuous culture. J Dairy Sci 2023; 106:8746-8757. [PMID: 37678783 DOI: 10.3168/jds.2023-23597] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 07/05/2023] [Indexed: 09/09/2023]
Abstract
The objective of this study was to compare cashew nutshell extract (CNSE) to monensin and evaluate changes in in vitro mixed ruminal microorganism fermentation, nutrient digestibility, and microbial nitrogen outflow. Treatments were randomly assigned to 8 fermenters in a replicated 4 × 4 Latin square design with 4 experimental periods of 10 d (7 d for diet adaptation and 3 d for sample collection). Basal diets contained 43.5:56.5 forage: concentrate ratio and each fermenter was fed 106 g of DM/d divided equally between 2 feeding times. Treatments were control (CON, basal diet without additives), 2.5 μM monensin (MON), 0.1 mg CNSE granule/g DM (CNSE100), and 0.2 mg CNSE granule/g DM (CNSE200). On d 8 to10, samples were collected for pH, lactate, NH3-N, volatile fatty acids (VFA), mixed protozoa counts, organic matter (OM), and neutral detergent fiber (NDF) digestibility. Data were analyzed with the GLIMMIX procedure of SAS. Orthogonal contrasts were used to test the effects of (1) ADD (CON vs. MON, CNSE100, and CNSE200); (2) MCN (MON vs. CNSE100 and CNSE200); and (3) DOSE (CNSE100 vs. CNSE200). We observed that butyrate concentration in all treatments was lower compared with CON and the concentration for MON was lower compared with CNSE treatments. Protozoal population in all treatments was lower compared with CON. No effects were observed for pH, lactate, NH3-N, total VFA, OM, or N utilization. Within the 24-h pool, protozoal generation time, tended to be lower, while NDF digestibility tended to be greater in response to all additives. Furthermore, the microbial N flow, and the efficiency of N use tended to be lower for the monensin treatment compared with CNSE treatments. Overall, our results showed that both monensin and CNSE decreased butyrate synthesis and protozoal populations, while not affecting OM digestibility and tended to increase NDF digestibility; however, such effects are greater with monensin than CNSE nutshell.
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Affiliation(s)
- E Sarmikasoglou
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - M L Johnson
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - J R Vinyard
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - P Sumadong
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611; Department of Animal Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | - R R Lobo
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - J A Arce-Cordero
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611; Escuela de Zootecnia, Universidad de Costa Rica, San Jose, 11501-2060, Costa Rica
| | - A Bahman
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - A Ravelo
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - S Halima
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - G K Salas-Solis
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611
| | - C Hikita
- SDS Biotech K.K., Tokyo, Japan 101-0022
| | | | - A P Faciola
- Department of Animal Sciences, University of Florida, Gainesville, FL 32611.
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9
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Lee S, Kim J, Baek Y, Seong P, Song J, Kim M, Kang S. Effects of different feeding systems on ruminal fermentation, digestibility, methane emissions, and microbiota of Hanwoo steers. JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 2023; 65:1270-1289. [PMID: 38616869 PMCID: PMC11007303 DOI: 10.5187/jast.2023.e82] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Revised: 07/19/2023] [Accepted: 08/04/2023] [Indexed: 04/16/2024]
Abstract
This study evaluates how different feeding systems impact ruminal fermentation, methane production, and microbiota of Hanwoo steers native to Korea. In a replicated 2 × 2 crossover design over 29 days per period, eight Hanwoo steers (507.1 ± 67.4 kg) were fed twice daily using a separate feeding (SF) system comprising separate concentrate mix and forage or total mixed rations (TMR) in a 15:85 ratio. The TMR-feeding group exhibited a considerable neutral detergent fiber digestibility increase than the SF group. However, ruminal fermentation parameters and methane production did not differ between two feeding strategies. In addition, TMR-fed steers expressed elevated Prevotellaceae family, Christensenellaceae R-7 group, and an unidentified Veillonellaceae family genus abundance in their rumen, whereas SF-fed steers were rich in the Rikenellaceae RC9 gut group, Erysipelotrichaceae UCG-004, and Succinivibrio. Through linear regression modeling, positive correlations were observed between the Shannon Diversity Index and the SF group's dry matter intake and methane production. Although feeding systems do not affect methane production, they can alter ruminal microbes. These results may guide future feeding system investigations or ruminal microbiota manipulations as a methane-mitigation practice examining different feed ingredients.
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Affiliation(s)
- Seul Lee
- Animal Nutrition & Physiology
Division, National Institute of Animal Science, Rural Development
Administration, Wanju 55365, Korea
| | - Jungeun Kim
- Animal Nutrition & Physiology
Division, National Institute of Animal Science, Rural Development
Administration, Wanju 55365, Korea
| | - Youlchang Baek
- Animal Nutrition & Physiology
Division, National Institute of Animal Science, Rural Development
Administration, Wanju 55365, Korea
| | - Pilnam Seong
- Animal Nutrition & Physiology
Division, National Institute of Animal Science, Rural Development
Administration, Wanju 55365, Korea
| | | | - Minseok Kim
- Division of Animal Science, College of
Agriculture and Life Sciences, Chonnam National University,
Gwangju 61186, Korea
| | - Seungha Kang
- The University of Queensland Frazer
Institute, Faculty of Medicine, University of Queensland,
Woolloongabba, Queensland 4072, Australia
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10
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Cheng X, Du X, Liang Y, Degen AA, Wu X, Ji K, Gao Q, Xin G, Cong H, Yang G. Effect of grape pomace supplement on growth performance, gastrointestinal microbiota, and methane production in Tan lambs. Front Microbiol 2023; 14:1264840. [PMID: 37840727 PMCID: PMC10569316 DOI: 10.3389/fmicb.2023.1264840] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 09/11/2023] [Indexed: 10/17/2023] Open
Abstract
Grape pomace (GP), a by-product in wine production, is nutritious and can be used as a feed ingredient for ruminants; however, its role in shaping sheep gastrointestinal tract (GIT) microbiota is unclear. We conducted a controlled trial using a randomized block design with 10 Tan lambs fed a control diet (CD) and 10 Tan lambs fed a pelleted diet containing 8% GP (dry matter basis) for 46 days. Rumen, jejunum, cecum, and colon bacterial and archaeal composition were identified by 16S rRNA gene sequencing. Dry matter intake (DMI) was greater (p < 0.05) in the GP than CD group; however, there was no difference in average daily gain (ADG, p < 0.05) and feed conversion ratio (FCR, p < 0.05) between the two groups. The GP group had a greater abundance of Prevotella 1 and Prevotella 7 in the rumen; of Sharpe, Ruminococcaceae 2, and [Ruminococcus] gauvreauii group in the jejunum; of Ruminococcaceae UCG-014 and Romboutsia in the cecum, and Prevotella UCG-001 in the colon; but lesser Rikenellaceae RC9 gut group in the rumen and cecum, and Ruminococcaceae UCG-005 and Ruminococcaceae UCG-010 in the colon than the CD group. The pathways of carbohydrate metabolism, such as L-rhamnose degradation in the rumen, starch and glycogen degradation in the jejunum, galactose degradation in the cecum, and mixed acid fermentation and mannan degradation in the colon were up-graded; whereas, the pathways of tricarboxylic acid (TCA) cycle VIII, and pyruvate fermentation to acetone in the rumen and colon were down-graded with GP. The archaeal incomplete reductive TCA cycle was enriched in the rumen, jejunum, and colon; whereas, the methanogenesis from H2 and CO2, the cofactors of methanogenesis, including coenzyme M, coenzyme B, and factor 420 biosynthesis were decreased in the colon. The study concluded that a diet including GP at 8% DM did not affect ADG or FCR in Tan lambs. However, there were some potential benefits, such as enhancing propionate production by microbiota and pathways in the GIT, promoting B-vitamin production in the rumen, facilitating starch degradation and amino acid biosynthesis in the jejunum, and reducing methanogenesis in the colon.
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Affiliation(s)
- Xindong Cheng
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xia Du
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yanping Liang
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Abraham Allan Degen
- Desert Animal Adaptations and Husbandry, Wyler Department of Dryland Agriculture, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Beer Sheva, Israel
| | - Xiukun Wu
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou, China
| | - Kaixi Ji
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qiaoxian Gao
- Ningxia Feed Engineering Technology Research Center, Ningxia University, Yinchuan, China
| | - Guosheng Xin
- Ningxia Feed Engineering Technology Research Center, Ningxia University, Yinchuan, China
| | - Haitao Cong
- Shandong Huakun Rural Revitalization Institute Co., Ltd., Jinan, China
| | - Guo Yang
- Key Laboratory of Stress Physiology and Ecology of Gansu Province, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- Yellow River Estuary Tan Sheep Institute of Industrial Technology, Dongying, China
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11
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Morgavi DP, Cantalapiedra-Hijar G, Eugène M, Martin C, Noziere P, Popova M, Ortigues-Marty I, Muñoz-Tamayo R, Ungerfeld EM. Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right? Animal 2023; 17 Suppl 3:100830. [PMID: 37263815 DOI: 10.1016/j.animal.2023.100830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 12/21/2022] [Accepted: 12/30/2022] [Indexed: 06/03/2023] Open
Abstract
The production of enteric methane in the gastrointestinal tract of livestock is considered as an energy loss in the equations for estimating energy metabolism in feeding systems. Therefore, the spared energy resulting from specific inhibition of methane emissions should be re-equilibrated with other factors of the equation. And, it is commonly assumed that net energy from feeds increases, thus benefitting production functions, particularly in ruminants due to the important production of methane in the rumen. Notwithstanding, we confirm in this work that inhibition of emissions in ruminants does not transpose into consistent improvements in production. Theoretical calculations of energy flows using experimental data show that the expected improvement in net energy for production is small and difficult to detect under the prevailing, moderate inhibition of methane production (≈25%) obtained using feed additives inhibiting methanogenesis. Importantly, the calculation of energy partitioning using canonical models might not be adequate when methanogenesis is inhibited. There is a lack of information on various parameters that play a role in energy partitioning and that may be affected under provoked abatement of methane. The formula used to calculate heat production based on respiratory exchanges should be validated when methanogenesis is inhibited. Also, a better understanding is needed of the effects of inhibition on fermentation products, fermentation heat, and microbial biomass. Inhibition induces the accumulation of H2, the main substrate used to produce methane, that has no energetic value for the host, and it is not extensively used by the majority of rumen microbes. Currently, the fate of this excess of H2 and its consequences on the microbiota and the host are not well known. All this additional information will provide a better account of energy transactions in ruminants when enteric methanogenesis is inhibited. Based on the available information, it is concluded that the claim that enteric methane inhibition will translate into more feed-efficient animals is not warranted.
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Affiliation(s)
- D P Morgavi
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France.
| | - G Cantalapiedra-Hijar
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - M Eugène
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - C Martin
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - P Noziere
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - M Popova
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - I Ortigues-Marty
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 Saint-Genes-Champanelle, France
| | - R Muñoz-Tamayo
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - E M Ungerfeld
- Centro Regional de Investigación Carillanca, Instituto de Investigaciones Agropecuarias INIA, Temuco 4880000, Chile
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12
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Yamada K, Iwamae K, Suzuki Y, Koike S, Kobayashi Y. Batch culture analysis to identify potent organic acids for suppressing ruminal methane production. Anim Sci J 2023; 94:e13873. [PMID: 37721187 DOI: 10.1111/asj.13873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/16/2023] [Accepted: 08/25/2023] [Indexed: 09/19/2023]
Abstract
We performed an in vitro rumen batch culture study to screen 11 commercially available organic acids for methane-suppressing ability and analyzed the rumen microbiota to determine the mode of action of the acids that showed potent methane-suppressing activity. Nine of the 11 acids showed methane-suppressing activity. Maleic anhydride, itaconate, citrate, and fumarate, which showed the highest activity, were further examined. These four acids showed methane-suppressing activity irrespective of the hay-to-concentrate ratios of the substrate. Maleic anhydride and itaconate decreased total gas and short-chain fatty acid production. Maleic anhydride and fumarate increased propionate production, while itaconate increased butyrate production. Maleic anhydride, itaconate, and citrate increased lactate production. Fumarate increased the abundance of bacteria involved in propionate production. Maleic anhydride, itaconate, and citrate increased the abundance of bacteria involved in lactate production. Thus, the results indicate that maleic anhydride, itaconate, and citrate may decrease methane in part by stimulating the acrylate pathway.
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Affiliation(s)
- Kyouko Yamada
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | | | - Yutaka Suzuki
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
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13
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Takizawa S, Shinkai T, Saito K, Fukumoto N, Arai Y, Hirai T, Maruyama M, Takeda M. Effect of rumen microbiota transfaunation on the growth, rumen fermentation, and microbial community of early separated Japanese Black cattle. Anim Sci J 2023; 94:e13876. [PMID: 37818871 DOI: 10.1111/asj.13876] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 08/20/2023] [Accepted: 09/07/2023] [Indexed: 10/13/2023]
Abstract
This study aimed to investigate the effect of rumen microbiota transfaunation on the growth, rumen fermentation, and the microbial community of Japanese Black cattle that were separated early from their dams. Here, 24 calves were separated from their dams immediately after calving, 12 of which were transfaunated via inoculation with rumen fluid from adult cattle at the age of 2 months while the remaining 12 were kept unfaunated (not-inoculated). Feed efficiency monitoring was performed during 7-10 months of age. Body weight and feed intake were not significantly different between the transfaunated and unfaunated cattle. Transfaunation increased the relative levels of acetate and butyrate but decreased those of propionate, which increased the non-glucogenic/glucogenic short-chain fatty acid ratio. Microbial 16S, 18S, and ITS ribosomal RNA gene amplicon analysis showed that rumen microbial diversity and composition differed between transfaunated and unfaunated cattle; transfaunation increased the abundance of acetate- and butyrate-producing bacteria, and decreased the abundance of bacterial genera associated with propionate production. Transfaunation also increased the abundance of Methanomassiliicoccaceae_group10 (1.94% vs. 0.05%) and Neocallimastix (27.1% vs. 6.8%) but decreased that of Methanomicrobium (<0.01% vs. 0.06%). Our findings indicate that rumen microbiota transfaunation shifts rumen fermentation toward acetate and butyrate production through a change in the rumen microbial composition in Japanese Black cattle.
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Affiliation(s)
- Shuhei Takizawa
- National Agriculture and Food Research Organization, Institute of Livestock and Grassland Science, Tsukuba, Japan
| | - Takumi Shinkai
- National Agriculture and Food Research Organization, Institute of Livestock and Grassland Science, Tsukuba, Japan
| | - Kunihiko Saito
- National Livestock Breeding Center Tokachi Station, Otofuke, Japan
| | - Natsuko Fukumoto
- National Livestock Breeding Center Tokachi Station, Otofuke, Japan
| | - Yukari Arai
- National Livestock Breeding Center Tokachi Station, Otofuke, Japan
- Ministry of Agriculture, Forestry and Fisheries, Tokyo, Japan
| | - Tomokazu Hirai
- National Livestock Breeding Center Tokachi Station, Otofuke, Japan
| | | | - Masayuki Takeda
- National Livestock Breeding Center Tokachi Station, Otofuke, Japan
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14
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Betancur-Murillo CL, Aguilar-Marín SB, Jovel J. Prevotella: A Key Player in Ruminal Metabolism. Microorganisms 2022; 11:microorganisms11010001. [PMID: 36677293 PMCID: PMC9866204 DOI: 10.3390/microorganisms11010001] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 12/15/2022] [Accepted: 12/17/2022] [Indexed: 12/24/2022] Open
Abstract
Ruminants are foregut fermenters that have the remarkable ability of converting plant polymers that are indigestible to humans into assimilable comestibles like meat and milk, which are cornerstones of human nutrition. Ruminants establish a symbiotic relationship with their microbiome, and the latter is the workhorse of carbohydrate fermentation. On the other hand, during carbohydrate fermentation, synthesis of propionate sequesters H, thus reducing its availability for the ultimate production of methane (CH4) by methanogenic archaea. Biochemically, methane is the simplest alkane and represents a downturn in energetic efficiency in ruminants; environmentally, it constitutes a potent greenhouse gas that negatively affects climate change. Prevotella is a very versatile microbe capable of processing a wide range of proteins and polysaccharides, and one of its fermentation products is propionate, a trait that appears conspicuous in P. ruminicola strain 23. Since propionate, but not acetate or butyrate, constitutes an H sink, propionate-producing microbes have the potential to reduce methane production. Accordingly, numerous studies suggest that members of the genus Prevotella have the ability to divert the hydrogen flow in glycolysis away from methanogenesis and in favor of propionic acid production. Intended for a broad audience in microbiology, our review summarizes the biochemistry of carbohydrate fermentation and subsequently discusses the evidence supporting the essential role of Prevotella in lignocellulose processing and its association with reduced methane emissions. We hope this article will serve as an introduction to novice Prevotella researchers and as an update to others more conversant with the topic.
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Affiliation(s)
- Claudia Lorena Betancur-Murillo
- Escuela de Ciencias Básicas, Tecnología e Ingeniería, Universidad Nacional Abierta y a Distancia, UNAD, Bogotá 111511, Colombia
| | | | - Juan Jovel
- Faculty of Veterinary Medicine, University of Calgary, 3280 Hospital Dr NW, Calgary, AB T2N 4Z6, Canada
- Correspondence:
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15
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de Sant'ana AS, Silva APR, do Nascimento SPO, Moraes AA, Nogueira JF, Bezerra FCM, da Costa CF, de Simoni Gouveia JJ, Gouveia GV, de Souza Rodrigues RT, Bonfa HC, Menezes DR. Tannin as a modulator of rumen microbial profile, apparent digestibility and ingestive behavior of lactating goats: A preliminary metagenomic view of goats adaptability to tannin. Res Vet Sci 2022; 145:159-168. [DOI: 10.1016/j.rvsc.2022.02.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 12/13/2021] [Accepted: 02/02/2022] [Indexed: 11/26/2022]
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16
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Narabe C, Kamiyama S, Saito M, Boonsaen P, Khongpradit A, Sawanon S, Suzuki Y, Koike S, Kobayashi Y. Cashew nut shell liquid potentially mitigates methane emission from the feces of Thai native ruminant livestock by modifying fecal microbiota. Anim Sci J 2021; 92:e13614. [PMID: 34405934 DOI: 10.1111/asj.13614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 07/21/2021] [Accepted: 08/04/2021] [Indexed: 11/29/2022]
Abstract
The methane-mitigating potency of cashew nutshell liquid (CNSL) was evaluated by investigating gas production from batch cultures using feces from Thai native ruminants that had been incubated for different periods. Feces was obtained from four Thai native cattle and four swamp buffaloes reared under practical feeding conditions at the Kasetsart University farm, Thailand. Fecal slurry from the same farm was also included in the analysis. CNSL addition successfully suppressed the methane production potential of feces from both ruminants by shifting short chain fatty acid profiles towards propionate production. Methane mitigation continued for almost 150 days, although the degree of mitigation was more apparent from Day 0 to Day 30. Bacterial and archaeal community shifts with CNSL addition were observed in feces from both ruminants; specifically, Bacteroides increased, whereas Lachnospiraceae and Ruminococcaceae decreased in feces to which CNSL was added. Fecal slurry did not show marked changes in gas production with CNSL addition. The findings showed that the addition of CNSL to the feces of ruminants native to the Southeast Asian region can suppress methane emission. Because CNSL can be easily obtained as a byproduct of the local cashew industry in this region, its on-site application might be ideal.
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Affiliation(s)
- Chiaki Narabe
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Saki Kamiyama
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Mizuki Saito
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Phoompong Boonsaen
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Anchalee Khongpradit
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Suriya Sawanon
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Yutaka Suzuki
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
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17
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Wakai M, Hayashi S, Chiba Y, Koike S, Nagashima K, Kobayashi Y. Growth and morphologic response of rumen methanogenic archaea and bacteria to cashew nut shell liquid and its alkylphenol components. Anim Sci J 2021; 92:e13598. [PMID: 34350672 DOI: 10.1111/asj.13598] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 05/12/2021] [Accepted: 06/29/2021] [Indexed: 11/29/2022]
Abstract
The growth and morphology of rumen methanogenic archaea (15 strains of 10 species in 5 genera, including 7 strains newly isolated in the present study) and bacteria (14 species in 12 genera) were investigated using unsupplemented in vitro pure cultures and cultures supplemented with cashew nut shell liquid (CNSL) and its phenolic compound components, anti-methanogenic agents for ruminant animals. Growth of most of the methanogens tested was inhibited by CNSL and alkylphenols at different concentrations ranging from 1.56 to 12.5 μg/ml. Of the alkylphenols tested, anacardic acid exhibited the most potent growth inhibition. Three gram-negative bacterial species involved in propionate production were resistant to CNSL and alkylphenols (>50 μg/ml). All the methanogens and bacteria that were sensitive to CNSL and alkylphenols exhibited altered morphology; disruption of the cell surface was notable, possibly due to surfactant activity of the tested materials. Cells division was inhibited in some organisms, with cell elongation and unclear septum formation observed. These results indicate that CNSL and alkylphenols, particularly anacardic acid, inhibit both rumen bacteria and methanogens in a selective manner, which could help mitigate rumen methane generation.
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Affiliation(s)
- Makimi Wakai
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Shusuke Hayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Yuko Chiba
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Kyo Nagashima
- Agri-Bio Technology Scetion, Agri-Bio Business Department, Idemitsu Kosan Co., Ltd., Tsukuba, Ibaraki, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
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18
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Tamori K, Matsunaga B, Boonsaen P, Khongpradit A, Sawanon S, Nagashima K, Koike S, Kobayashi Y. Feeding cashew nut shell liquid decreases methane production from feces by altering fecal bacterial and archaeal communities in Thai local ruminants. Anim Sci J 2021; 92:e13569. [PMID: 34056806 DOI: 10.1111/asj.13569] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 04/02/2021] [Accepted: 05/06/2021] [Indexed: 11/26/2022]
Abstract
The effect of feeding cashew nut shell liquid (CNSL) on fecal fermentation products and microbiota was investigated in Thai native cattle and swamp buffaloes. Four of each animal were fed rice straw and concentrate diet with control pellets without CNSL for 4 weeks, followed by the same diet with pellets containing CNSL for another 4 weeks, so that CNSL was administered at a level of 4 g/100 kg body weight. Feces were collected the last 2 days in each feeding period. CNSL alkyl phenols were recovered from feces (16%-28%) in a similar proportion to those in the diet, indicating that most functional anacardic acid was not selectively removed throughout the digestive tract. In vitro production of gas from feces, particularly methane, decreased with CNSL feeding. The proportion of acetate in feces decreased with CNSL feeding, whereas that of propionate increased, without affecting total short-chain fatty acid concentration. CNSL feeding changed fecal microbial community, particularly in swamp buffaloes, which exhibited decreases in the frequencies of Treponema, unclassified Ruminococcaceae, and Methanomassiliicoccaceae. These results suggest that CNSL feeding alters not only rumen fermentation but also hindgut fermentation via modulation of the microbial community, thereby potentially attenuating methane emission from the feces of ruminant animals.
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Affiliation(s)
- Koya Tamori
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan.,Agri-Bio Business Department, Idemitsu Kosan Co., Ltd, Tsukuba, Japan
| | - Bungo Matsunaga
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Phoompong Boonsaen
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Anchalee Khongpradit
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Suriya Sawanon
- Department of Animal Science, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
| | - Kyo Nagashima
- Agri-Bio Business Department, Idemitsu Kosan Co., Ltd, Tsukuba, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
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19
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Su C, Shinkai T, Miyazawa N, Mitsumori M, Enishi O, Nagashima K, Koike S, Kobayashi Y. Microbial community structure of the bovine rumen as affected by feeding cashew nut shell liquid, a methane-inhibiting and propionate-enhancing agent. Anim Sci J 2021; 92:e13503. [PMID: 33398898 DOI: 10.1111/asj.13503] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/28/2020] [Accepted: 12/11/2020] [Indexed: 11/29/2022]
Abstract
The effect of cashew nut shell liquid (CNSL) feeding on bacterial and archaeal community of the bovine rumen was investigated by analyzing clone libraries targeting 16S rRNA genes, methyl-coenzyme reductase A-encoding genes (mcrA), and their respective transcripts. Rumen samples were collected from three non-lactating cows fed on a hay and concentrate diet with or without CNSL supplementation. DNA and complementary DNA (cDNA) libraries were generated for investigating rumen microbial communities. MiSeq analysis also was performed to understand more comprehensively the changes in the microbial community structures. Following CNSL supplementation, the number of operational taxonomical unit (OTU) and diversity indices of bacterial and archaeal community were decreased. Bacterial OTUs belonging to Proteobacteria, including Succinivibrio, occurred at a higher frequency with CNSL feeding, especially in cDNA libraries. The methanogenic archaeal community became dominated by Methanomicrobium. A bacterial community shift also was observed in the MiSeq data, indicating that CNSL increased the proportion of Succinivibrio and other genera known to be involved in propionate production. Methanogenic archaeal community shifts to increase Methanoplanus and to decrease Methanobrevibacter also were observed. Together, these results imply the occurrence of significant changes in rumen communities, not only for bacteria but also for methanogens, following CNSL feeding.
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Affiliation(s)
- Chisato Su
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Takumi Shinkai
- National Institute of Livestock and Grassland Science, Tsukuba, Ibaraki, Japan
| | - Nodoka Miyazawa
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Makoto Mitsumori
- National Institute of Livestock and Grassland Science, Tsukuba, Ibaraki, Japan
| | - Osamu Enishi
- National Institute of Livestock and Grassland Science, Tsukuba, Ibaraki, Japan
| | - Kyo Nagashima
- Advanced Technologies Research Laboratories, Idemitsu Kosan Co., Ltd., Sodegaura, Chiba, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido, Japan
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20
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Maeda K, Nguyen VT, Suzuki T, Yamada K, Kudo K, Hikita C, Le VP, Nguyen MC, Yoshida N. Network analysis and functional estimation of the microbiome reveal the effects of cashew nut shell liquid feeding on methanogen behaviour in the rumen. Microb Biotechnol 2021; 14:277-290. [PMID: 33166077 PMCID: PMC7888476 DOI: 10.1111/1751-7915.13702] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 09/16/2020] [Accepted: 10/20/2020] [Indexed: 12/19/2022] Open
Abstract
The effects of cashew nut shell liquid (CNSL) feeding on the methane (CH4 ) emission and the ruminal microbiome of Lai Sind beef cattle were investigated. Changes in the methane production and rumen microbiome by CNSL feeding were monitored by a respiration chamber and 16S rRNA gene amplicon sequencing respectively. The results demonstrated that CNSL feeding mitigated 20.2%-23.4% of the CH4 emission in vivo without apparent adverse effects on feed intake and feed digestibility. The rumen fluid analysis revealed a significant increase in the proportion of propionate in the total short-chain fatty acids. The relative abundance of methanogen (order Methanobacteriales) decreased significantly, indicating the direct inhibitory effect of CNSL on methanogens. The predicted function of the rumen microbiome indicated that carbohydrate and lipid metabolisms including propionate production were upregulated by CNSL feeding, whereas CH4 metabolism was downregulated. A network analysis revealed that methanogen changed its partner bacteria after CNSL feeding. The δ13 C of CH4 ranged from -74.2‰ to -66.6‰ with significant fluctuation by CNSL feeding, in agreement with the shift of the rumen microbiome. Our findings demonstrate that CNSL feeding can mitigate the CH4 emission from local cattle production systems in South-East Asia by modifying the rumen microbiome and its function.
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Affiliation(s)
- Koki Maeda
- Crop, Livestock & Environment DivisionJapan International Research Center for Agricultural Sciences (JIRCAS)1‐1 OhwashiTsukubaIbaraki305‐8686Japan
| | - Van Thu Nguyen
- Faculty of AgricultureCan Tho UniversityCampus II, 3/2 StNinh KieuCan ThoVietnam
| | - Tomoyuki Suzuki
- Crop, Livestock & Environment DivisionJapan International Research Center for Agricultural Sciences (JIRCAS)1‐1 OhwashiTsukubaIbaraki305‐8686Japan
- Central Region Agricultural Research CenterNational Agriculture and Food Research Organization (NARO)768 SenbonmatsuNasu‐shiobaraTochigi329‐2793Japan
| | - Keita Yamada
- Department of Environmental Chemistry and EngineeringTokyo Institute of Technology4259 NagatsutaMidori‐kuYokohama226‐8502Japan
| | - Kushi Kudo
- Department of Environmental Chemistry and EngineeringTokyo Institute of Technology4259 NagatsutaMidori‐kuYokohama226‐8502Japan
- Faculty of Human Development and EnvironmentKobe University3‐11 TsurukabutoNada‐kuKobe657‐8501Japan
| | - Chie Hikita
- Idemitsu Kosan, Co. Ltd.2‐1 MidorigaharaTsukubaIbaraki300‐2646Japan
| | - Van Phong Le
- Faculty of AgricultureCan Tho UniversityCampus II, 3/2 StNinh KieuCan ThoVietnam
| | - Minh Chon Nguyen
- Faculty of AgricultureCan Tho UniversityCampus II, 3/2 StNinh KieuCan ThoVietnam
| | - Naohiro Yoshida
- Department of Environmental Chemistry and EngineeringTokyo Institute of Technology4259 NagatsutaMidori‐kuYokohama226‐8502Japan
- Earth‐Life Science InstituteTokyo Institute of Technology2‐12‐1 Ookayama, Meguro‐kuTokyo152‐8550Japan
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Calcium salts of long-chain fatty acids from linseed oil decrease methane production by altering the rumen microbiome in vitro. PLoS One 2020; 15:e0242158. [PMID: 33170886 PMCID: PMC7654805 DOI: 10.1371/journal.pone.0242158] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 10/27/2020] [Indexed: 01/10/2023] Open
Abstract
Calcium salts of long-chain fatty acids (CSFA) from linseed oil have the potential to reduce methane (CH4) production from ruminants; however, there is little information on the effect of supplementary CSFA on rumen microbiome as well as CH4 production. The aim of the present study was to evaluate the effects of supplementary CSFA on ruminal fermentation, digestibility, CH4 production, and rumen microbiome in vitro. We compared five treatments: three CSFA concentrations-0% (CON), 2.25% (FAL) and 4.50% (FAH) on a dry matter (DM) basis-15 mM of fumarate (FUM), and 20 mg/kg DM of monensin (MON). The results showed that the proportions of propionate in FAL, FAH, FUM, and MON were increased, compared with CON (P < 0.05). Although DM and neutral detergent fiber expressed exclusive of residual ash (NDFom) digestibility decreased in FAL and FAH compared to those in CON (P < 0.05), DM digestibility-adjusted CH4 production in FAL and FAH was reduced by 38.2% and 63.0%, respectively, compared with that in CON (P < 0.05). The genera Ruminobacter, Succinivibrio, Succiniclasticum, Streptococcus, Selenomonas.1, and Megasphaera, which are related to propionate production, were increased (P < 0.05), while Methanobrevibacter and protozoa counts, which are associated with CH4 production, were decreased in FAH, compared with CON (P < 0.05). The results suggested that the inclusion of CSFA significantly changed the rumen microbiome, leading to the acceleration of propionate production and the reduction of CH4 production. In conclusion, although further in vivo study is needed to evaluate the reduction effect on rumen CH4 production, CSFA may be a promising candidate for reduction of CH4 emission from ruminants.
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Okuhira K, Koike S, Ito S, Kobayashi Y. The bio-surfactant mannosylerythritol lipid acts as a selective antibacterial agent to modulate rumen fermentation. Anim Sci J 2020; 91:e13464. [PMID: 33021004 DOI: 10.1111/asj.13464] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 07/28/2020] [Accepted: 09/09/2020] [Indexed: 11/27/2022]
Abstract
Methyl-mannosylerythritol lipid (MEL), a new sugar esterified lipid synthesized by Pseudozyma aphidis, was assessed for its functionality in modulating rumen fermentation and microbiota toward more propionate and less methane production. A pure culture study using rumen representatives showed that MEL selectively inhibited the growth of most Gram-positive bacteria including Streptococcus bovis, ruminococci, and Fibrobacter succinogenes, but not Gram-negative bacteria such as Megasphaera elsdenii, Succinivibrio dextrinosolvens, and Selenomonas ruminantium. A batch culture study revealed that MEL significantly decreased methane production in a dose-dependent manner with accumulation of hydrogen, while propionate production was enhanced. A continuous culture (Rusitec) study confirmed all of these changes. A feeding study revealed that sheep fed a MEL diet showed an increased proportion of propionate, while proportions of acetate and butyrate were decreased without affecting total VFA level. These changes disappeared after cessation of MEL feeding. Based on these results, dietary application of MEL can favorably modify rumen fermentation in terms of the efficiency of dietary energy utilization.
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Affiliation(s)
- Kana Okuhira
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | - Shinji Ito
- Agri-bio Business Division, Idemitsu Kosan Co., Ltd, Sodegaura, Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
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Effects of dietary replacement of urea with encapsulated nitrate and cashew nut shell liquid on nutrient digestibility, nitrogen balance, and carcass characteristics in growing lambs. Anim Feed Sci Technol 2020. [DOI: 10.1016/j.anifeedsci.2020.114515] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Teobaldo RW, De Paula NF, Zervoudakis JT, Fonseca MA, Cabral LS, Martello HF, Rocha JKL, Ribeiro IJ, Mundim AT. Inclusion of a blend of copaiba, cashew nut shell and castor oil in the protein-energy supplement for grazing beef cattle improves rumen fermentation, nutrient intake and fibre digestibility. ANIMAL PRODUCTION SCIENCE 2020. [DOI: 10.1071/an18725] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Context
Essential oils are secondary plant compounds extracted from plants, with potential for the modulation of rumen fermentation.
Aims
Two experiments, namely one in vivo and another in vitro, were conducted to analyse the effects of a commercial blend of essential oils (EO; copaiba (Copaifera langsdorffii), cashew nut shell (Anacardium occidentale) and castor oil (Ricinus communis) and monensin as dietary feed additives in protein–energy supplements (PES) provided to grazing beef cattle, on ruminal fermentation, intake, total nutrient digestibility and protein dietary efficiency.
Methods
In the in vivo experiment, four entire Nellore bulls cannulated in the rumen (374 ± 15.66 kg; mean ± s.d.) were used in a 4 × 4 Latin-square design to evaluate the effects of EO concentration and monensin on voluntary intake, digestibility, and rumen and metabolic characteristics of grazing beef cattle provided with supplementation during the rainy season. Treatments were as follows: control (CON; PES without additives); monensin (MON; PES with inclusion of monensin at 20 mg/kg DM consumed); EO150 (PES with inclusion of EO at 150 mg/kg DM consumed); EO300 (PES with inclusion of EO at 300 mg/kg DM consumed). In the in vitro experiment, the effects EO150, EO300 and EO450, MON and CON on DM and neutral detergent-fibre (NDF) digestibility, and total gas production, were evaluated in four consecutive runs using a gas-production (GP) system.
Key results
In the in vivo experiment, DM intake, forage DM intake, crude protein intake and NDF intake were similar (P > 0.05) between EO150 and MON, but both were greater than those in EO300 and CON (P < 0.05). A lower EO concentration (EO150) increased (P < 0.05) NDF digestibility and improved nitrogen utilisation efficiency. In the in vitro experiment, the addition of MON and EO150 did not modify (P > 0.05) GP, DM and NDF digestibility compared with the control, but EO300 and EO450 decreased GP at 12 and 24 h and decreased DM and NDF digestibility at 48 h compared with the control, MON and EO150.
Conclusions
In vivo and in vitro results suggested that EO (copaiba oil, cashew nut shell and castor) at low doses (150 mg/kg DM) has the potential to improve ruminal fermentation in grazing beef cattle receiving supplements, but medium and high doses of EO can have adverse effects.
Implications
EO blends could be an alternative to MON for grazing beef cattle with access to supplements.
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Castelli M, Sabaneyeva E, Lanzoni O, Lebedeva N, Floriano AM, Gaiarsa S, Benken K, Modeo L, Bandi C, Potekhin A, Sassera D, Petroni G. Deianiraea, an extracellular bacterium associated with the ciliate Paramecium, suggests an alternative scenario for the evolution of Rickettsiales. THE ISME JOURNAL 2019; 13:2280-2294. [PMID: 31073215 PMCID: PMC6776064 DOI: 10.1038/s41396-019-0433-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 02/19/2019] [Accepted: 04/10/2019] [Indexed: 12/28/2022]
Abstract
Rickettsiales are a lineage of obligate intracellular Alphaproteobacteria, encompassing important human pathogens, manipulators of host reproduction, and mutualists. Here we report the discovery of a novel Rickettsiales bacterium associated with Paramecium, displaying a unique extracellular lifestyle, including the ability to replicate outside host cells. Genomic analyses show that the bacterium possesses a higher capability to synthesise amino acids, compared to all investigated Rickettsiales. Considering these observations, phylogenetic and phylogenomic reconstructions, and re-evaluating the different means of interaction of Rickettsiales bacteria with eukaryotic cells, we propose an alternative scenario for the evolution of intracellularity in Rickettsiales. According to our reconstruction, the Rickettsiales ancestor would have been an extracellular and metabolically versatile bacterium, while obligate intracellularity would have evolved later, in parallel and independently, in different sub-lineages. The proposed new scenario could impact on the open debate on the lifestyle of the last common ancestor of mitochondria within Alphaproteobacteria.
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Affiliation(s)
- Michele Castelli
- Centro Romeo ed Enrica Invernizzi Ricerca Pediatrica, Dipartimento di Bioscienze, Università degli studi di Milano, Milan, Italy
| | - Elena Sabaneyeva
- Department of Cytology and Histology, Faculty of Biology, Saint Petersburg State University, Saint Petersburg, Russia
| | - Olivia Lanzoni
- Dipartimento di Biologia, Università di Pisa, Pisa, Italy
| | - Natalia Lebedeva
- Centre of Core Facilities "Culture Collections of Microorganisms", Saint Petersburg State University, Saint Petersburg, Russia
| | - Anna Maria Floriano
- Dipartimento di Biologia e Biotecnologie, Università degli studi di Pavia, Pavia, Italy
| | - Stefano Gaiarsa
- Dipartimento di Biologia e Biotecnologie, Università degli studi di Pavia, Pavia, Italy
- UOC Microbiologia e Virologia, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy
| | - Konstantin Benken
- Core Facility Center for Microscopy and Microanalysis, Saint Petersburg State University, Saint Petersburg, Russia
| | - Letizia Modeo
- Dipartimento di Biologia, Università di Pisa, Pisa, Italy
| | - Claudio Bandi
- Centro Romeo ed Enrica Invernizzi Ricerca Pediatrica, Dipartimento di Bioscienze, Università degli studi di Milano, Milan, Italy
| | - Alexey Potekhin
- Department of Microbiology, Faculty of Biology, Saint Petersburg State University, Saint Petersburg, Russia
| | - Davide Sassera
- Dipartimento di Biologia e Biotecnologie, Università degli studi di Pavia, Pavia, Italy.
| | - Giulio Petroni
- Dipartimento di Biologia, Università di Pisa, Pisa, Italy.
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Konda S, Onodera R, Kanchanasatit E, Boonsaen P, Sawanon S, Nagashima K, Suzuki Y, Koike S, Kobayashi Y. Effect of cashew nut shell liquid feeding on fermentation and microbiota in the rumen of Thai native cattle and swamp buffaloes. Livest Sci 2019. [DOI: 10.1016/j.livsci.2019.06.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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PEREIRA DC, GOES RHDTEBD, MARTINEZ AC, GANDRA JR, PRESENDO E, SANTOS MVD, OLIVEIRA RT, SILVA NGD, RIBEIRO MG, ALVEZ JLR. In vitro evaluation of the association of chitosan and cashew nut shell liquid as additives for ruminants. REVISTA BRASILEIRA DE SAÚDE E PRODUÇÃO ANIMAL 2019. [DOI: 10.1590/s1519-994005102019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
ABSTRACT This study evaluated the in vitro digestibility of nutrients from different diets added with chitosan (Q), technic cashew nut shell liquid (LCC) and the association of Q and LCC. The treatments used consisted of 4 diets (forage: concentrate ratio of 100: 0, 50:50, 40:60 and 20:80) associated with 4 additives (control, chitosan, LCC and the association of Q + LCC), totaling 16 treatments, in a 4x4 factorial randomized block design. The dosages used were: Control (without additives), LCC (600mg/kg DM), Chitosan (900mg/kg DM), and LCCQ (600mg/kg LCC DM + 900mg/kg Chitosan DM). In the laboratory, samples were analyzed for IVDMD, IVNDFD, IVCPD, pH and RAN (ruminal ammonia nitrogen). For pH and RAN analyses, samples were taken at 0, 2, 4, 6 and 8 hours after incubation. The results showed higher digestibility of DM, NDF and CP for diets with chitosan and technic cashew nut shell liquid alone and higher pH and RAN values in the diets containing the two additives. The association of additives brings better results for animal nutrition and increases ruminant productivity.
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Ghizzi LG, Del Valle TA, Takiya CS, da Silva GG, Zilio EM, Grigoletto NT, Martello LS, Rennó FP. Effects of functional oils on ruminal fermentation, rectal temperature, and performance of dairy cows under high temperature humidity index environment. Anim Feed Sci Technol 2018. [DOI: 10.1016/j.anifeedsci.2018.10.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kang S, Suzuki R, Suzuki Y, Koike S, Nagashima K, Kobayashi Y. Rumen responses to dietary supplementation with cashew nut shell liquid and its cessation in sheep. Anim Sci J 2018; 89:1549-1555. [DOI: 10.1111/asj.13100] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 06/18/2018] [Accepted: 07/24/2018] [Indexed: 11/27/2022]
Affiliation(s)
| | - Ryo Suzuki
- Research Faculty of Agriculture; Hokkaido University; Sapporo Japan
| | - Yutaka Suzuki
- Research Faculty of Agriculture; Hokkaido University; Sapporo Japan
| | - Satoshi Koike
- Research Faculty of Agriculture; Hokkaido University; Sapporo Japan
| | - Kyo Nagashima
- Agri-Bio Business Division; Idemitsu Kosan Co. Ltd.; Sodegaura Japan
| | - Yasuo Kobayashi
- Research Faculty of Agriculture; Hokkaido University; Sapporo Japan
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Ungerfeld EM. Inhibition of Rumen Methanogenesis and Ruminant Productivity: A Meta-Analysis. Front Vet Sci 2018; 5:113. [PMID: 29971241 PMCID: PMC6018482 DOI: 10.3389/fvets.2018.00113] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Accepted: 05/14/2018] [Indexed: 01/08/2023] Open
Abstract
Methane (CH4) formed in the rumen and released to the atmosphere constitutes an energy inefficiency to ruminant production. Redirecting energy in CH4 to fermentation products with a nutritional value to the host animal could increase ruminant productivity and stimulate the adoption of CH4-suppressing strategies. The hypothesis of this research was that inhibiting CH4 formation in the rumen is associated with greater ruminant productivity. The primary objective of this meta-analysis was to evaluate how inhibiting rumen methanogenesis relates with the efficiencies of milk production and growth and fattening. A systematic review of peer-reviewed studies in which rumen methanogenesis was inhibited with chemical compounds was conducted. Experiments were clustered based on research center, year of publication, experimental design, feeding regime, type of animal, production response, inhibitor of CH4 production, and method of CH4 measurement. Response variables were regressed against the random experiment effect nested in its cluster, the random effect of the cluster, the linear and quadratic effects of CH4 production, and the random interaction between CH4 production and the experiment nested in the cluster. When applicable, responses were adjusted by intake of different nutrients included as regressors. Inhibiting rumen methanogenesis tended to associate positively with milk production efficiency, although the relationship was influenced by individual experiments. Likewise, a positive relationship between methanogenesis inhibition and growth and fattening efficiency depended on the inclusion and weighting of individual experiments. Inhibiting rumen methanogenesis negatively associated with dry matter intake. Interpretation of the effects of inhibiting methanogenesis on productivity is limited by the availability of experiments simultaneously reporting energy losses in feces, H2, urine and heat production, as well as net energy partition. It is concluded that inhibiting rumen methanogenesis has not consistently translated into greater animal productivity, and more animal performance experiments are necessary to better characterize the relationships between animal productivity and methanogenesis inhibition in the rumen. A more complete understanding of changes in the flows of nutrients caused by inhibiting rumen methanogenesis and their effect on intake also seems necessary to effectively re-channel energy gained from CH4 suppression toward consistent gains in productivity.
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Affiliation(s)
- Emilio M Ungerfeld
- Coordinación de Sistemas Ganaderos, Instituto de Investigaciones Agropecuarias INIA Carillanca, Temuco, Chile
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Henderson G, Cook GM, Ronimus RS. Enzyme- and gene-based approaches for developing methanogen-specific compounds to control ruminant methane emissions: a review. ANIMAL PRODUCTION SCIENCE 2018. [DOI: 10.1071/an15757] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Methane emissions from ruminants are of worldwide concern due to their potential to adversely affect climate patterns. Methane emissions can be mitigated in several ways, including dietary manipulation, the use of alternative hydrogen sinks, and by the direct inhibition of methanogens. In the present review, we summarise and emphasise studies where defined chemically synthesised compounds have been used to mitigate ruminant methane emissions by direct targeting of methanogens and discuss the future potential of such inhibitors. We also discuss experiments, where methanogen-specific enzymes and pure cultures of methanobacterial species have been used to aid development of inhibitors. Application of certain compounds can result in dramatic reductions of methane emissions from ruminant livestock, demonstrating ‘proof of principle’ of chemical inhibitors of methanogenesis. More recently, genome sequencing of rumen methanogens has enabled an in-depth analysis of the enzymatic pathways required for methane formation. Chemogenomic methods, similar to those used in the fight against cancer and infectious diseases, can now be used to specifically target a pathway or enzyme in rumen methanogens. However, few rumen methanogen enzymes have been structurally or biochemically characterised. Any compound, whether natural or man-made, that is used as a mitigation strategy will need to be non-toxic to the host animal (and humans), cost-effective, environmentally friendly, and not accumulate in host tissues or milk products. Chemically synthesised inhibitors offer potentially significant advantages, including high levels of sustained inhibition, the ability to be easily and rapidly produced for global markets, and have the potential to be incorporated into slow-release vehicles for grazing animals.
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Oh S, Suzuki Y, Hayashi S, Suzuki Y, Koike S, Kobayashi Y. Potency of cashew nut shell liquid in rumen modulation under different dietary conditions and indication of its surfactant action against rumen bacteria. JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 2017; 59:27. [PMID: 29204288 PMCID: PMC5701504 DOI: 10.1186/s40781-017-0150-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Accepted: 10/24/2017] [Indexed: 11/27/2022]
Abstract
Background Cashew nut shell liquid (CNSL) is an agricultural byproduct containing alkylphenols that has been shown to favorably change the rumen fermentation pattern only under experimentally fixed feeding conditions. Investigation of CNSL potency in rumen modulation under a variety of feeding regimens, and evidence leading to the understanding of CNSL action are obviously necessary for further CNSL applications. The objective of this study was to evaluate the potency of CNSL for rumen modulation under different dietary conditions, and to visually demonstrate its surfactant action against selected rumen bacteria. Methods Batch culture studies were carried out using various diets with 5 different forage to concentrate (F:C) ratios (9:1, 7:3, 5:5. 3:7 and 1:9). Strained rumen fluid was diluted with a buffer and incubated with each diet. Gas and short chain fatty acid (SCFA) profiles were characterized after 18 h incubation at 39 °C. Monensin was also evaluated as a reference additive under the same conditions. Four species of rumen bacteria were grown in pure culture and exposed to CNSL to determine their morphological sensitivity to the surfactant action of CNSL. Results CNSL supplementation decreased total gas production in diets with 5:5 and 3:7 F:C ratios, whereas the F:C ratio alone did not affect any gas production. Methane decrease by CNSL addition was more apparent in diets with 5:5, 3:7, and 1:9 F:C ratios. An interactive effect of CNSL and the F:C ratio was also observed for methane production. CNSL supplementation enhanced propionate production, while total SCFA production was not affected. Monensin decreased methane production but only in a diet with a 1:9 F:C ratio with increased propionate. Studies of pure cultures indicated that CNSL damaged the cell surface of hydrogen- and formate-producing bacteria, but did not change that of propionate-producing bacteria. Conclusion CNSL can selectively inhibit rumen bacteria through its surfactant action to lead fermentation toward less methane and more propionate production. As CNSL is effective over a wider range of dietary conditions for such modulation of rumen fermentation in comparison with monensin, this new additive candidate might be applied to ruminant animals for various production purposes and at various stages.
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Affiliation(s)
- Seongjin Oh
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Yasuyuki Suzuki
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Shusuke Hayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Yutaka Suzuki
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Satoshi Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Yasuo Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589 Japan.,Laboratory of Animal Function and Nutrition, Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
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Molecular hydrogen generated by elemental magnesium supplementation alters rumen fermentation and microbiota in goats. Br J Nutr 2017; 118:401-410. [PMID: 28927478 DOI: 10.1017/s0007114517002161] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We tested the hypotheses that supplementation of a diet with elemental Mg increases ruminal dissolved H2 (dH2) in rumen fluid, which in turn alters rumen fermentation and microbial community in goats. In a randomised block design, twenty growing goats were allocated to two treatments fed the same basal diet with 1·45 % Mg(OH)2 or 0·6 % elemental Mg. After 28 d of adaptation, we collected total faeces to measure total tract digestibility, rumen contents to analyse fermentation end products and microbial groups, and measured methane (CH4) emission using respiration chambers. Ruminal Mg2+ concentration was similar in both treatments. Elemental Mg supplementation increased dH2 at 2·5 h post morning feeding (+180 %, P<0·001). Elemental Mg supplementation decreased total volatile fatty acid concentration (-8·6 %, P<0·001), the acetate:propionate ratio (-11·8 %, P<0·03) and fungal copy numbers (-63·6 %, P=0·006), and increased propionate molar percentage (+11·6 %, P<0·001), methanogen copy numbers (+47·9 %, P<0·001), dissolved CH4 (+35·6 %, P<0·001) and CH4 emissions (+11·7 %, P=0·03), compared with Mg(OH)2 supplementation. The bacterial community composition in both treatments was overall similar. Ruminal dH2 was negatively correlated with acetate molar percentage and fungal copy numbers (P<0·05), and positively correlated with propionate molar percentage and methanogen copy numbers (P<0·05). In summary, elemental Mg supplementation increased ruminal dH2 concentration, which inhibited rumen fermentation, enhanced methanogenesis and seemed to shift fermentation pathways from acetate to propionate, and altered microbiota by decreasing fungi and increasing methanogens.
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Negussie E, de Haas Y, Dehareng F, Dewhurst R, Dijkstra J, Gengler N, Morgavi D, Soyeurt H, van Gastelen S, Yan T, Biscarini F. Invited review: Large-scale indirect measurements for enteric methane emissions in dairy cattle: A review of proxies and their potential for use in management and breeding decisions. J Dairy Sci 2017; 100:2433-2453. [DOI: 10.3168/jds.2016-12030] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Accepted: 12/07/2016] [Indexed: 01/15/2023]
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Deng YF, Wang YJ, Zou Y, Azarfar A, Wei XL, Ji SK, Zhang J, Wu ZH, Wang SX, Dong SZ, Xu Y, Shao DF, Xiao JX, Yang KL, Cao ZJ, Li SL. Influence of dairy by-product waste milk on the microbiomes of different gastrointestinal tract components in pre-weaned dairy calves. Sci Rep 2017; 7:42689. [PMID: 28281639 PMCID: PMC5345013 DOI: 10.1038/srep42689] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 01/13/2017] [Indexed: 12/25/2022] Open
Abstract
The community structure of colonised bacteria in the gastrointestinal tracts (GITs) of pre-weaned calves is affected by extrinsic factors, such as the genetics and diet of the calves; however, the dietary impact is not fully understood and warrants further research. Our study revealed that a total of 6, 5, 2 and 10 bacterial genera showed biologically significant differences in the GITs of pre-weaned calves fed four waste-milk diets: acidified waste milk, pasteurised waste milk, untreated bulk milk, and untreated waste milk, respectively. Specifically, generic biomarkers were observed in the rumen (e.g., Bifidobacterium, Parabacteroides, Fibrobacter, Clostridium, etc.), caecum (e.g., Faecalibacterium, Oxalobacter, Odoribacter, etc.) and colon (e.g., Megamonas, Comamonas, Stenotrophomonas, etc.) but not in the faeces. In addition, the predicted metabolic pathways showed that the expression of genes related to metabolic diseases was increased in the calves fed untreated waste milk, which indicated that untreated waste milk is not a suitable liquid diet for pre-weaned calves. This is the first study to demonstrate how different types of waste milk fed to pre-weaned calves affect the community structure of colonised bacteria, and the results may provide insights for the intentional adjustment of diets and gastrointestinal bacterial communities.
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Affiliation(s)
- Y F Deng
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - Y J Wang
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - Y Zou
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - A Azarfar
- Department of Animal Science, Faculty of Agriculture, Lorestan University, PO Box 465, Khorramabad, Iran
| | - X L Wei
- Sichuan Animal Science Academy, Animal Breeding and Genetics key Laboratory of Sichuan Province, Chengdu 610066, P. R. China
| | - S K Ji
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - J Zhang
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - Z H Wu
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - S X Wang
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - S Z Dong
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - Y Xu
- Beijing Computing Center, Beijing 100094, P. R. China
| | - D F Shao
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - J X Xiao
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - K L Yang
- College of Animal Science, Xinjiang Agricultural University, Wulumuqi 830052, P. R. China
| | - Z J Cao
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
| | - S L Li
- State Key Laboratory of Animal Nutrition, Beijing Engineering Technology Research Center of Raw Milk Quality and Safety Control, College of Animal Science and Technology, China Agricultural University, Beijing 100193, P. R. China
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Oh S, Shintani R, Koike S, Kobayashi Y. Ginkgo fruit extract as an additive to modify rumen microbiota and fermentation and to mitigate methane production. J Dairy Sci 2017; 100:1923-1934. [PMID: 28088403 DOI: 10.3168/jds.2016-11928] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Accepted: 11/18/2016] [Indexed: 11/19/2022]
Abstract
Ginkgo fruit, an unused byproduct of the ginkgo nut industry, contains antimicrobial compounds known as anacardic acids. Two major cultivars of ginkgo, Kyuju (K) and Tokuro (T), were evaluated for their potential as a feed additive for ruminants. In batch culture, we incubated a mixture of hay and concentrate in diluted rumen fluid with or without 1.6% (fruit equivalent) ginkgo fruit extract. We conducted another series of batch culture studies to determine the dose response of fermentation. We also conducted continuous culture using the rumen simulation technique (RUSITEC) with cultivar K and carried out a pure culture study to monitor the sensitivity of 17 representative rumen bacterial species to ginkgo extract and component phenolics. Although both K and T extracts led to decreased methane and increased propionate production, changes were more apparent with K extract, and were dose-dependent. Total gas production was depressed at doses ≥3.2%, suggesting that 1.6% was the optimal supplementation level. In RUSITEC fermentation supplemented with 1.6% ginkgo K, methane decreased by 53% without affecting total gas or total VFA production, but with decreased acetate and increased propionate. Disappearance of dry matter, neutral detergent fiber, and acid detergent fiber were not affected by ginkgo, but ammonia levels were decreased. Quantitative PCR indicated that the abundance of protozoa, fungi, methanogens, and bacteria related to hydrogen and formate production decreased, but the abundance of bacteria related to propionate production increased. MiSeq analysis (Illumina Inc., San Diego, CA) confirmed these bacterial changes and identified archaeal community changes, including a decrease in Methanobrevibacter and Methanomassiliicoccaceae and an increase in Methanoplanus. Pure culture study results supported the findings for the above bacterial community changes. These results demonstrate that ginkgo fruit can modulate rumen fermentation toward methane mitigation and propionate enhancement via microbial selection.
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Affiliation(s)
- S Oh
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - R Shintani
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - S Koike
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - Y Kobayashi
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
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Kobayashi Y, Oh S, Myint H, Koike S. Use of Asian selected agricultural byproducts to modulate rumen microbes and fermentation. J Anim Sci Biotechnol 2016; 7:70. [PMID: 28018590 PMCID: PMC5159970 DOI: 10.1186/s40104-016-0126-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 10/25/2016] [Indexed: 11/10/2022] Open
Abstract
In the last five decades, attempts have been made to improve rumen fermentation and host animal nutrition through modulation of rumen microbiota. The goals have been decreasing methane production, partially inhibiting protein degradation to avoid excess release of ammonia, and activation of fiber digestion. The main approach has been the use of dietary supplements. Since growth-promoting antibiotics were banned in European countries in 2006, safer alternatives including plant-derived materials have been explored. Plant oils, their component fatty acids, plant secondary metabolites and other compounds have been studied, and many originate or are abundantly available in Asia as agricultural byproducts. In this review, the potency of selected byproducts in inhibition of methane production and protein degradation, and in stimulation of fiber degradation was described in relation to their modes of action. In particular, cashew and ginkgo byproducts containing alkylphenols to mitigate methane emission and bean husks as a source of functional fiber to boost the number of fiber-degrading bacteria were highlighted. Other byproducts influencing rumen microbiota and fermentation profile were also described. Future application of these feed and additive candidates is very dependent on a sufficient, cost-effective supply and optimal usage in feeding practice.
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Affiliation(s)
- Yasuo Kobayashi
- Lab of Animal Function and Nutrition, Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Seongjin Oh
- Lab of Animal Function and Nutrition, Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Htun Myint
- Lab of Animal Function and Nutrition, Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
| | - Satoshi Koike
- Lab of Animal Function and Nutrition, Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589 Japan
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Ferreira de Jesus E, Del Valle T, Calomeni G, Silva T, Takiya C, Vendramini T, Paiva P, Silva G, Netto A, Rennó F. Influence of a blend of functional oils or monensin on nutrient intake and digestibility, ruminal fermentation and milk production of dairy cows. Anim Feed Sci Technol 2016. [DOI: 10.1016/j.anifeedsci.2016.06.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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39
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Shinkai T, Mitsumori M, Sofyan A, Kanamori H, Sasaki H, Katayose Y, Takenaka A. Comprehensive detection of bacterial carbohydrate-active enzyme coding genes expressed in cow rumen. Anim Sci J 2016; 87:1363-1370. [PMID: 26875748 DOI: 10.1111/asj.12585] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Revised: 10/27/2015] [Accepted: 11/17/2015] [Indexed: 11/29/2022]
Abstract
To find the abundant and characteristic fibrolytic enzyme-coding gene expressed in fiber-associating microbiota, a metatranscriptomic data set was obtained from fiber-associating microbiota, and it was compared with that of rumen fluid-floating microbiota and two metagenomic data sets. Fibrolytic rumen bacteria associate with plant polysaccharide and hydrolyze it in the rumen. We obtained a metatranscriptomic assembly from fiber-associating microbiota in three ruminally fistulated Holstein cows fed timothy (Phleum pratense) hay. Each metatranscriptomic data set involved over a thousand of the glycoside hydrolase (GH) gene transcripts that accounted for about 1% of total protein coding gene transcripts. Three-quarters of the total GH gene transcripts were dominated by non-structural oligosaccharide-acting hydrolase gene transcripts. In the fiber-associating microbiota, endo-cellulase coding gene families, especially GHs 9 and 5, were abundantly detected, and GHs 9, 11, 30 and 43, carbohydrate esterase 8 and carbohydrate-binding module 6 were characteristically detected. Most fibrolytic gene transcripts assigned to Fibrobacter succinogenes were detected in fiber-associating sections, and GHs 45, 44, 74, 11, 30 and 16 were Fibrobacter-characteristically detected. The metatranscriptomic assembly highlighted the characteristic fibrolytic enzymes expressed in the fiber-associated rumen microbiota and offered access to the fibrolytic activities in each fibrolytic bacteria.
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Affiliation(s)
| | - Makoto Mitsumori
- NARO Institute of Livestock and Grassland Science.,Graduate School of Life and Environmental Sciences, University of Tsukuba
| | - Ahmad Sofyan
- Graduate School of Life and Environmental Sciences, University of Tsukuba
| | - Hiroyuki Kanamori
- National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Harumi Sasaki
- National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Yuichi Katayose
- National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Akio Takenaka
- NARO Institute of Livestock and Grassland Science.,National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
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40
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Ungerfeld EM. Limits to Dihydrogen Incorporation into Electron Sinks Alternative to Methanogenesis in Ruminal Fermentation. Front Microbiol 2015; 6:1272. [PMID: 26635743 PMCID: PMC4649033 DOI: 10.3389/fmicb.2015.01272] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2015] [Accepted: 10/30/2015] [Indexed: 12/15/2022] Open
Abstract
Research is being conducted with the objective of decreasing methane (CH4) production in the rumen, as methane emissions from ruminants are environmentally damaging and a loss of digestible energy to ruminants. Inhibiting ruminal methanogenesis generally results in accumulation of dihydrogen (H2), which is energetically inefficient and can inhibit fermentation. It would be nutritionally beneficial to incorporate accumulated H2 into propionate or butyrate production, or reductive acetogenesis. The objective of this analysis was to examine three possible physicochemical limitations to the incorporation of accumulated H2 into propionate and butyrate production, and reductive acetogenesis, in methanogenesis-inhibited ruminal batch and continuous cultures: (i) Thermodynamics; (ii) Enzyme kinetics; (iii) Substrate kinetics. Batch (N = 109) and continuous (N = 43) culture databases of experiments with at least 50% inhibition in CH4 production were used in this meta-analysis. Incorporation of accumulated H2 into propionate production and reductive acetogenesis seemed to be thermodynamically feasible but quite close to equilibrium, whereas this was less clear for butyrate. With regard to enzyme kinetics, it was speculated that hydrogenases of ruminal microorganisms may have evolved toward high-affinity and low maximal velocity to compete for traces of H2, rather than for high pressure accumulated H2. Responses so far obtained to the addition of propionate production intermediates do not allow distinguishing between thermodynamic and substrate kinetics control.
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Affiliation(s)
- Emilio M Ungerfeld
- INIA Carillanca, Instituto de Investigaciones Agropecuarias Temuco, Chile
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41
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Branco A, Giallongo F, Frederick T, Weeks H, Oh J, Hristov A. Effect of technical cashew nut shell liquid on rumen methane emission and lactation performance of dairy cows. J Dairy Sci 2015; 98:4030-40. [DOI: 10.3168/jds.2014-9015] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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42
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Lopes LD, de Souza Lima AO, Taketani RG, Darias P, da Silva LRF, Romagnoli EM, Louvandini H, Abdalla AL, Mendes R. Exploring the sheep rumen microbiome for carbohydrate-active enzymes. Antonie van Leeuwenhoek 2015; 108:15-30. [PMID: 25900454 DOI: 10.1007/s10482-015-0459-6] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Accepted: 04/16/2015] [Indexed: 10/23/2022]
Abstract
The rumen is a complex ecosystem enriched for microorganisms able to degrade biomass during the animal's digestion process. The recovery of new enzymes from naturally evolved biomass-degrading microbial communities is a promising strategy to overcome the inefficient enzymatic plant destruction in industrial production of biofuels. In this context, this study aimed to describe the bacterial composition and functions in the sheep rumen microbiome, focusing on carbohydrate-active enzymes (CAE). Here, we used phylogenetic profiling analysis (inventory of 16S rRNA genes) combined with metagenomics to access the rumen microbiome of four sheep and explore its potential to identify fibrolytic enzymes. The bacterial community was dominated by Bacteroidetes and Firmicutes, followed by Proteobacteria. As observed for other ruminants, Prevotella was the dominant genus in the microbiome, comprising more than 30 % of the total bacterial community. Multivariate analysis of the phylogenetic profiling data and chemical parameters showed a positive correlation between the abundance of Prevotellaceae (Bacteroidetes phylum) and organic matter degradability. A negative correlation was observed between Succinivibrionaceae (Proteobacteria phylum) and methane production. An average of 2 % of the shotgun metagenomic reads was assigned to putative CAE when considering nine protein databases. In addition, assembled contigs allowed recognition of 67 putative partial CAE (NCBI-Refseq) representing 12 glycosyl hydrolase families (Pfam database). Overall, we identified a total of 28 lignocellulases, 22 amylases and 9 other putative CAE, showing the sheep rumen microbiome as a promising source of new fibrolytic enzymes.
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Affiliation(s)
- Lucas Dantas Lopes
- Laboratory of Environmental Microbiology, Embrapa Environment, Rod. SP340 km 127.5, Jaguaríuna, SP, Zip Code 13820-000, Brazil
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43
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Danielsson R, Werner-Omazic A, Ramin M, Schnürer A, Griinari M, Dicksved J, Bertilsson J. Effects on enteric methane production and bacterial and archaeal communities by the addition of cashew nut shell extract or glycerol-an in vitro evaluation. J Dairy Sci 2014; 97:5729-41. [PMID: 24996274 DOI: 10.3168/jds.2014-7929] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2014] [Accepted: 05/18/2014] [Indexed: 11/19/2022]
Abstract
The objective of the study was to evaluate the effect of cashew nut shell extract (CNSE) and glycerol (purity >99%) on enteric methane (CH4) production and microbial communities in an automated gas in vitro system. Microbial communities from the in vitro system were compared with samples from the donor cows, in vivo. Inoculated rumen fluid was mixed with a diet with a 60:40 forage:concentrate ratio and, in total, 5 different treatments were set up: 5mg of CNSE (CNSE-L), 10mg of CNSE (CNSE-H), 15mmol of glycerol/L (glycerol-L), and 30mmol of glycerol/L (glycerol-H), and a control without feed additive. Gas samples were taken at 2, 4, 8, 24, 32, and 48h of incubation, and the CH4 concentration was measured. Samples of rumen fluid were taken for volatile fatty acid analysis and for microbial sequence analyses after 8, 24, and 48h of incubation. In vivo rumen samples from the cows were taken 2h after the morning feeding at 3 consecutive days to compare the in vitro system with in vivo conditions. The gas data and data from microbial sequence analysis (454 sequencing) were analyzed using a mixed model and principal components analysis. These analyses illustrated that CH4 production was reduced with the CNSE treatment, by 8 and 18%, respectively, for the L and H concentration. Glycerol instead increased CH4 production by 8 and 12%, respectively, for the L and H concentration. The inhibition with CNSE could be due to the observed shift in bacterial population, possibly resulting in decreased production of hydrogen or formate, the methanogenic substrates. Alternatively the response could be explained by a shift in the methanogenic community. In the glycerol treatments, no main differences in bacterial or archaeal population were detected compared with the in vivo control. Thus, the increase in CH4 production may be explained by the increase in substrate in the in vitro system. The reduced CH4 production in vitro with CNSE suggests that CNSE can be a promising inhibitor of CH4 formation in the rumen of dairy cows.
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Affiliation(s)
- Rebecca Danielsson
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, SE-75323, Uppsala, Sweden.
| | - Anna Werner-Omazic
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, SE-75323, Uppsala, Sweden
| | - Mohammad Ramin
- Department of Agricultural Research for Northern Sweden, Swedish University of Agricultural Sciences, SE-901 83, Umeå, Sweden
| | - Anna Schnürer
- Department of Microbiology, Swedish University of Agricultural Sciences, SE-75007, Uppsala, Sweden
| | - Mikko Griinari
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, SE-75323, Uppsala, Sweden
| | - Johan Dicksved
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, SE-75323, Uppsala, Sweden
| | - Jan Bertilsson
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, SE-75323, Uppsala, Sweden
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44
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Ricci P, Rooke JA, Nevison I, Waterhouse A. Methane emissions from beef and dairy cattle: quantifying the effect of physiological stage and diet characteristics. J Anim Sci 2014; 91:5379-89. [PMID: 24174549 DOI: 10.2527/jas.2013-6544] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The prediction of methane outputs from ruminant livestock data at farm, national, and global scales is a vital part of greenhouse gas calculations. The objectives of this work were to quantify the effect of physiological stage (lactating or nonlactating) on predicting methane (CH4) outputs and to illustrate the potential improvement for a beef farming system of using more specific mathematical models to predict CH4 from cattle at different physiological stages and fed different diet types. A meta-analysis was performed on 211 treatment means from 38 studies where CH4, intake, animal, and feed characteristics had been recorded. Additional information such as type of enterprise, diet type, physiological stage, CH4 measurement technique, intake restriction, and CH4 reduction treatment application from these studies were used as classificatory factors. A series of equations for different physiological stages and diet types based on DMI or GE intake explained 96% of the variation in observed CH4 outputs (P<0.001). Resulting models were validated with an independent dataset of 172 treatment means from 20 studies. To illustrate the scale of improvement on predicted CH4 outputs from the current whole-farm prediction approach (Intergovernmental Panel on Climate Change [IPCC]), equations developed in the present study (NewEqs) were compared with the IPCC equation {CH4 (g/d)=[(GEI×Ym)×1,000]/55.65}, in which GEI is GE intake and Ym is the CH4 emission factor, in calculating CH4 outputs from 4 diverse beef systems. Observed BW and BW change data from cows with calves at side grazing either hill or lowland grassland, cows and overwintering calves and finishing steers fed contrasting diets were used to predict energy requirements, intake, and CH4 outputs. Compared with using this IPCC equation, NewEqs predicted up to 26% lower CH4 on average from individual lactating grazing cows. At the herd level, differences between equation estimates from 10 to 17% were observed in total annual accumulated CH4 when applied to the 4 diverse beef production systems. Overall, despite the small number of animals used it was demonstrated that there is a biological impact of using more specific CH4 prediction equations. Based on this approach, farm and national carbon budgets will be more accurate, contributing to reduced uncertainty in assessing mitigation options at farm and national level.
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Affiliation(s)
- P Ricci
- Future Farming Systems Group, SRUC, West Mains Road, Edinburgh, EH9 3JG, UK
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45
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El-Zaiat HM, Araujo RC, Soltan YA, Morsy AS, Louvandini H, Pires AV, Patino HO, Correa PS, Abdalla AL. Encapsulated nitrate and cashew nut shell liquid on blood and rumen constituents, methane emission, and growth performance of lambs. J Anim Sci 2014; 92:2214-24. [PMID: 24663200 DOI: 10.2527/jas.2013-7084] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Nitrate can be a source of NPN for microbial growth at the same time that it reduces ruminal methane production. The objective of this study was to evaluate the effects of 2 encapsulated nitrate products used as urea replacers on blood and rumen constituents, methane emission, and growth performance of lambs. Eighteen Santa Inês male lambs (27 ± 4.9 kg) were individually allotted to indoor pens and assigned to a randomized complete block design with 6 blocks and 3 dietary treatments: control (CTL) = 1.5% urea, ENP = 4.51% encapsulated nitrate product (60.83% NO3(-) in the product DM), and ENP+CNSL = 4.51% ENP containing cashew nut shell liquid (60.83% NO3(-) and 2.96% cashew nut shell liquid [CNSL] in the product DM). Diets were isonitrogenous with 60:40 concentrate:forage (Tifton 85 hay) ratio. The experiment lasted for 92 d and consisted of 28 d for adaptation (a weekly 33% stepwise replacement of CTL concentrate by nitrate-containing concentrates) and 64 d for data collection. The ENP and ENP+CNSL showed greater (P < 0.05) red blood cell counts than CTL. Blood methemoglobin (MetHb) did not differ (P > 0.05) among treatments, with mean values within normal range and remaining below 1.1% of total hemoglobin. There was an increase (P < 0.05) in total short-chain fatty acids concentration at 3 h postfeeding for ENP, with an additional increase (P < 0.05) observed for ENP+CNSL. No treatment effects (P > 0.05) were observed on acetate to propionate ratio. Methane production (L/kg DMI) was reduced (P < 0.05) with nitrate inclusion, recording 28.6, 19.1, and 19.5 L/kg DMI for CTL, ENP, and ENP+CNSL, respectively. Addition of CNSL did not result (P > 0.05) in further reduction of methane production when compared with ENP. Final BW, DMI, ADG, and feed efficiency were similar (P > 0.05) among treatments. Values for DMI were 1.11, 1.03, and 1.04 kg/d and for ADG were 174, 154, and 158 g for CTL, ENP, and ENP+CNSL, respectively. In conclusion, encapsulated nitrate products showed no risks of toxicity based on MetHb formation. The products persistently reduced methane production without affecting performance. Inclusion of cashew nut shell liquid in the product formulation had no additional benefits on methane mitigation.
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Affiliation(s)
- H M El-Zaiat
- Federal University of Rio Grande do Sul, Faculty of Agronomy, Animal Science Department, Porto Alegre, Brazil
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46
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Li ZP, Liu HL, Jin CA, Cui XZ, Jing Y, Yang FH, Li GY, Wright ADG. Differences in the methanogen population exist in sika deer (Cervus nippon) fed different diets in China. MICROBIAL ECOLOGY 2013; 66:879-888. [PMID: 24061342 DOI: 10.1007/s00248-013-0282-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2013] [Accepted: 08/21/2013] [Indexed: 06/02/2023]
Abstract
Understanding the methanogen structure from sika deer (Cervus nippon) in China may be beneficial to methane mitigation. In the present preliminary study, we investigated the methanogen community in the rumen of domesticated sika deer fed either tannin-rich plants (oak leaf, OL group) or corn stalk (CS group) using 16S rRNA gene clone libraries. Overall, we obtained 197 clone sequences, revealing 146 unique phylotypes, which were assigned to 36 operational taxonomic units at the species level (98 % identity). Methanogens related to the genus Methanobrevibacter were the predominant phylotypes representing 83.9 % (OL library) and 85.9 % (CS library) of the clones. Methanobrevibacter millerae was the most abundant species in both libraries, but the proportion of M. millerae-related clones in the CS library was higher than in the OL library (69.5 and 51.4 %, respectively). Moreover, Methanobrevibacter wolinii-related clones (32.5 %) were predominant in the OL library. Methanobrevibacter smithii-related clones and Methanobrevibacter ruminantium-related clones accounted for 6.5 and 6.6 % in the CS library, respectively. However, these clones were absent from the OL library. The concentrations of butyrate and total short-chain fatty acids (SCFAs) were significantly higher in the OL group, but the concentrations of acetate, propionate, and valerate and the acetate to propionate ratio in the OL group were not significantly different between the two groups. Tannin-rich plants may have affected the distribution of genus Methanobrevibacter phylotypes at the species level and the concentration and composition of SCFAs.
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Affiliation(s)
- Zhi Peng Li
- Department of Economical Animal Nutrition and Feed Science, Institute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences, Jilin, China
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47
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Mitsumori M, Enishi O, Shinkai T, Higuchi K, Kobayashi Y, Takenaka A, Nagashima K, Mochizuki M, Kobayashi Y. Effect of cashew nut shell liquid on metabolic hydrogen flow on bovine rumen fermentation. Anim Sci J 2013; 85:227-32. [DOI: 10.1111/asj.12133] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Accepted: 07/16/2013] [Indexed: 11/26/2022]
Affiliation(s)
- Makoto Mitsumori
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Osamu Enishi
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Takumi Shinkai
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Koji Higuchi
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Yosuke Kobayashi
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Akio Takenaka
- National Institute of Livestock and Grassland Science; Tsukuba Ibaraki
| | - Kyo Nagashima
- Environment and Biotechnology Laboratory; Idemitsu Kosan Co. Ltd; Sodegaura
| | - Masami Mochizuki
- Environment and Biotechnology Laboratory; Idemitsu Kosan Co. Ltd; Sodegaura
| | - Yasuo Kobayashi
- Research Faculty of Agriculture; Hokkaido University; Sapporo Hokkaido Japan
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