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Christensen M, Adams D, Wong ML, Dunn P, Yung YL. New Estimates of Nitrogen Fixation on Early Earth. Life (Basel) 2024; 14:601. [PMID: 38792622 PMCID: PMC11122333 DOI: 10.3390/life14050601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/10/2024] [Accepted: 04/12/2024] [Indexed: 05/26/2024] Open
Abstract
Fixed nitrogen species generated by the early Earth's atmosphere are thought to be critical to the emergence of life and the sustenance of early metabolisms. A previous study estimated nitrogen fixation in the Hadean Earth's N2/CO2-dominated atmosphere; however, that previous study only considered a limited chemical network that produces NOx species (i.e., no HCN formation) via the thermochemical dissociation of N2 and CO2 in lightning flashes, followed by photochemistry. Here, we present an updated model of nitrogen fixation on Hadean Earth. We use the Chemical Equilibrium with Applications (CEA) thermochemical model to estimate lightning-induced NO and HCN formation and an updated version of KINETICS, the 1-D Caltech/JPL photochemical model, to assess the photochemical production of fixed nitrogen species that rain out into the Earth's early ocean. Our updated photochemical model contains hydrocarbon and nitrile chemistry, and we use a Geant4 simulation platform to consider nitrogen fixation stimulated by solar energetic particle deposition throughout the atmosphere. We study the impact of a novel reaction pathway for generating HCN via HCN2, inspired by the experimental results which suggest that reactions with CH radicals (from CH4 photolysis) may facilitate the incorporation of N into the molecular structure of aerosols. When the HCN2 reactions are added, we find that the HCN rainout rate rises by a factor of five in our 1-bar case and is about the same in our 2- and 12-bar cases. Finally, we estimate the equilibrium concentration of fixed nitrogen species under a kinetic steady state in the Hadean ocean, considering loss by hydrothermal vent circulation, photoreduction, and hydrolysis. These results inform our understanding of environments that may have been relevant to the formation of life on Earth, as well as processes that could lead to the emergence of life elsewhere in the universe.
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Affiliation(s)
- Madeline Christensen
- Bellarmine Preparatory Marine Chemistry Program, Tacoma, WA 98405, USA
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
| | - Danica Adams
- Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138, USA
- NHFP Sagan Fellow, NASA Hubble Fellowship Program, Space Telescope Science Institute, Baltimore, MD 21218, USA
| | - Michael L. Wong
- NHFP Sagan Fellow, NASA Hubble Fellowship Program, Space Telescope Science Institute, Baltimore, MD 21218, USA
- Earth and Planets Laboratory, Carnegie Institution for Science, Washington, DC 20015, USA
| | - Patrick Dunn
- Space Sciences Laboratory, University of California, Berkeley, CA 94720, USA;
| | - Yuk L. Yung
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
- NASA Jet Propulsion Laboratory, Pasadena, CA 91109, USA
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2
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Macey MC, Ramkissoon NK, Cogliati S, Toubes-Rodrigo M, Stephens BP, Kucukkilic-Stephens E, Schwenzer SP, Pearson VK, Preston LJ, Olsson-Francis K. Habitability and Biosignature Formation in Simulated Martian Aqueous Environments. ASTROBIOLOGY 2023; 23:144-154. [PMID: 36577028 DOI: 10.1089/ast.2021.0197] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Water present on early Mars is often assumed to have been habitable. In this study, experiments were performed to investigate the habitability of well-defined putative martian fluids and to identify the accompanying potential formation of biosignatures. Simulated martian environments were developed by combining martian fluid and regolith simulants based on the chemistry of the Rocknest sand shadow at Gale Crater. The simulated chemical environment was inoculated with terrestrial anoxic sediment from the Pyefleet mudflats (United Kingdom). These enrichments were cultured for 28 days and subsequently subcultured seven times to ensure that the microbial community was solely grown on the defined, simulated chemistry. The impact of the simulated chemistries on the microbial community was assessed by cell counts and sequencing of 16S rRNA gene profiles. Associated changes to the fluid and precipitate chemistries were established by using ICP-OES, IC, FTIR, and NIR. The fluids were confirmed as habitable, with the enriched microbial community showing a reduction in abundance and diversity over multiple subcultures relating to the selection of specific metabolic groups. The final community comprised sulfate-reducing, acetogenic, and other anaerobic and fermentative bacteria. Geochemical characterization and modeling of the simulant and fluid chemistries identified clear differences between the biotic and abiotic experiments. These differences included the elimination of sulfur owing to the presence of sulfate-reducing bacteria and more general changes in pH associated with actively respiring cells that impacted the mineral assemblages formed. This study confirmed that a system simulating the fluid chemistry of Gale Crater could support a microbial community and that variation in chemistries under biotic and abiotic conditions can be used to inform future life-detection missions.
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Affiliation(s)
- Michael C Macey
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Nisha K Ramkissoon
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Simone Cogliati
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Mario Toubes-Rodrigo
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Ben P Stephens
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Ezgi Kucukkilic-Stephens
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Susanne P Schwenzer
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Victoria K Pearson
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Louisa J Preston
- Mullard Space Science Laboratory, Department of Space and Climate Physics, University College London, London, United Kingdom
| | - Karen Olsson-Francis
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, United Kingdom
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3
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Amils R, Escudero C, Oggerin M, Puente Sánchez F, Arce Rodríguez A, Fernández Remolar D, Rodríguez N, García Villadangos M, Sanz JL, Briones C, Sánchez-Román M, Gómez F, Leandro T, Moreno-Paz M, Prieto-Ballesteros O, Molina A, Tornos F, Sánchez-Andrea I, Timmis K, Pieper DH, Parro V. Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt. Environ Microbiol 2023; 25:428-453. [PMID: 36453153 PMCID: PMC10107794 DOI: 10.1111/1462-2920.16291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 11/23/2022] [Indexed: 12/03/2022]
Abstract
Microbial activity is a major contributor to the biogeochemical cycles that make up the life support system of planet Earth. A 613 m deep geomicrobiological perforation and a systematic multi-analytical characterization revealed an unexpected diversity associated with the rock matrix microbiome that operates in the subsurface of the Iberian Pyrite Belt (IPB). Members of 1 class and 16 genera were deemed the most representative microorganisms of the IPB deep subsurface and selected for a deeper analysis. The use of fluorescence in situ hybridization allowed not only the identification of microorganisms but also the detection of novel activities in the subsurface such as anaerobic ammonium oxidation (ANAMMOX) and anaerobic methane oxidation, the co-occurrence of microorganisms able to maintain complementary metabolic activities and the existence of biofilms. The use of enrichment cultures sensed the presence of five different complementary metabolic activities along the length of the borehole and isolated 29 bacterial species. Genomic analysis of nine isolates identified the genes involved in the complete operation of the light-independent coupled C, H, N, S and Fe biogeochemical cycles. This study revealed the importance of nitrate reduction microorganisms in the oxidation of iron in the anoxic conditions existing in the subsurface of the IPB.
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Affiliation(s)
- Ricardo Amils
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
- Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain
| | - Cristina Escudero
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
- Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain
| | - Monike Oggerin
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | | | - Alejandro Arce Rodríguez
- Institute of Microbiology, Technical University Braunschweig, Germany
- Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany
| | | | - Nuria Rodríguez
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | | | - José Luis Sanz
- Department of Molecular Biology, Universidad Autónoma de Madrid, Madrid, Spain
| | - Carlos Briones
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | | | - Felipe Gómez
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | - Tania Leandro
- Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid, Madrid, Spain
| | | | | | - Antonio Molina
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | - Fernando Tornos
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
| | | | - Kenneth Timmis
- Institute of Microbiology, Technical University Braunschweig, Germany
| | - Dietmar H Pieper
- Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany
| | - Victor Parro
- Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Spain
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Zhong YW, Zhou P, Cheng H, Zhou YD, Pan J, Xu L, Li M, Tao CH, Wu YH, Xu XW. Metagenomic Features Characterized with Microbial Iron Oxidoreduction and Mineral Interaction in Southwest Indian Ridge. Microbiol Spectr 2022; 10:e0061422. [PMID: 36286994 PMCID: PMC9769843 DOI: 10.1128/spectrum.00614-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Accepted: 07/25/2022] [Indexed: 01/05/2023] Open
Abstract
The Southwest Indian Ridge (SWIR) is one of the typical representatives of deep-sea ultraslow-spreading ridges, and has increasingly become a hot spot of studying subsurface geological activities and deep-sea mining management. However, the understanding of microbial activities is still limited on active hydrothermal vent chimneys in SWIR. In this study, samples from an active black smoker and a diffuse vent located in the Longqi hydrothermal region were collected for deep metagenomic sequencing, which yielded approximately 290 GB clean data and 295 mid-to-high-quality metagenome-assembled genomes (MAGs). Sulfur oxidation conducted by a variety of Gammaproteobacteria, Alphaproteobacteria, and Campylobacterota was presumed to be the major energy source for chemosynthesis in Longqi hydrothermal vents. Diverse iron-related microorganisms were recovered, including iron-oxidizing Zetaproteobacteria, iron-reducing Deferrisoma, and magnetotactic bacterium. Twenty-two bacterial MAGs from 12 uncultured phyla harbored iron oxidase Cyc2 homologs and enzymes for organic carbon degradation, indicated novel chemolithoheterotrophic iron-oxidizing bacteria that affected iron biogeochemistry in hydrothermal vents. Meanwhile, potential interactions between microbial communities and chimney minerals were emphasized as enriched metabolic potential of siderophore transportation, and extracellular electron transfer functioned by multi-heme proteins was discovered. Composition of chimney minerals probably affected microbial iron metabolic potential, as pyrrhotite might provide more available iron for microbial communities. Collectively, this study provides novel insights into microbial activities and potential mineral-microorganism interactions in hydrothermal vents. IMPORTANCE Microbial activities and interactions with minerals and venting fluid in active hydrothermal vents remain unclear in the ultraslow-spreading SWIR (Southwest Indian Ridge). Understanding about how minerals influence microbial metabolism is currently limited given the obstacles in cultivating microorganisms with sulfur or iron oxidoreduction functions. Here, comprehensive descriptions on microbial composition and metabolic profile on 2 hydrothermal vents in SWIR were obtained based on cultivation-free metagenome sequencing. In particular, autotrophic sulfur oxidation supported by minerals was presumed, emphasizing the role of chimney minerals in supporting chemosynthesis. Presence of novel heterotrophic iron-oxidizing bacteria was also indicated, suggesting overlooked biogeochemical pathways directed by microorganisms that connected sulfide mineral dissolution and organic carbon degradation in hydrothermal vents. Our findings offer novel insights into microbial function and biotic interactions on minerals in ultraslow-spreading ridges.
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Affiliation(s)
- Ying-Wen Zhong
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Peng Zhou
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Hong Cheng
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Ya-Dong Zhou
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Jie Pan
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China
| | - Lin Xu
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
- College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, PR China
| | - Meng Li
- Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, PR China
| | - Chun-Hui Tao
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
- Key Laboratory of Submarine Geosciences, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Yue-Hong Wu
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
| | - Xue-Wei Xu
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, PR China
- Key Laboratory of Marine Ecosystem Dynamics, Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, PR China
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5
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Enuh BM, Aytar Çelik P. Insight into the biotechnology potential of Alicyclobacillus tolerans from whole genome sequence analysis and genome-scale metabolic network modeling. J Microbiol Methods 2022; 197:106459. [PMID: 35395336 DOI: 10.1016/j.mimet.2022.106459] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 03/31/2022] [Accepted: 03/31/2022] [Indexed: 12/27/2022]
Abstract
Extremophilic bacteria have numerous uncovered biotechnological potentials. Acidophilic bacteria are important iron oxidizers that are valuable in bioleaching and in studying extreme environments on earth and in space. Despite their obvious potential, little is known about the genetic traits that underpin their metabolic functions, which are equally poorly understood from a mechanistic perspective. Novel bioinformatics and computational biology pipelines can be used to analyze whole genomes to obtain insights into the phenotypic potential of organisms as well as develop a mathematical model representation of metabolism. Whole-genome sequence analysis and a genome-scale metabolic network model was curated for an iron-oxidizing bacterium initially isolated from an acid mine drainage in Turkey, previously identified as Alicyclobacillus tolerans. The genome contained a high proportion of genes for energy generation from carbohydrates, amino acids synthesis and conversion, nucleic acid metabolism and repair which contribute to robust adaption to their extreme environments. Several candidate genes for pyrite metabolism, iron uptake, regulation and storage, as well as genes for resistance to important heavy metals were annotated. A curated genome-scale metabolic network analysis accurately predicted facultative anaerobic growth, heterotrophic characteristics, and growth on a wide variety of carbon sources. This is the first in-depth in silico analysis of A. tolerans to the best of our knowledge which is expected to lay the groundwork for future research and drive innovations in environmental microbiology and biotechnological applications. The genomic data and mechanistic framework will have applications in biomining, synthetic geomicrobiology on earth, as well as for space exploration and settlement.
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Affiliation(s)
- Blaise Manga Enuh
- Department of Biotechnology and Biosafety, Graduate School of Natural and Applied Science, Eskisehir Osmangazi University, 26040 Eskisehir, Turkey
| | - Pınar Aytar Çelik
- Department of Biotechnology and Biosafety, Graduate School of Natural and Applied Science, Eskisehir Osmangazi University, 26040 Eskisehir, Turkey; Environmental Protection and Control Program, Eskişehir Osmangazi University, Eskişehir 26110, Turkey.
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6
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Price A, Macey MC, Pearson VK, Schwenzer SP, Ramkissoon NK, Olsson-Francis K. Oligotrophic Growth of Nitrate-Dependent Fe 2+-Oxidising Microorganisms Under Simulated Early Martian Conditions. Front Microbiol 2022; 13:800219. [PMID: 35418959 PMCID: PMC8997339 DOI: 10.3389/fmicb.2022.800219] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 02/24/2022] [Indexed: 11/30/2022] Open
Abstract
Nitrate-dependent Fe2+ oxidation (NDFO) is a microbially mediated process observed in many anaerobic, low-nutrient (oligotrophic) neutral-alkaline environments on Earth, which describes oxidation of Fe2+ to Fe3+ in tandem with microbial nitrate reduction. Evidence suggests that similar environments existed on Mars during the Noachian epoch (4.1-3.7 Ga) and in periodic, localised environments more recently, indicating that NDFO metabolism could have played a role in a potential early martian biosphere. In this paper, three NDFO microorganisms, Acidovorax sp. strain BoFeN1, Pseudogulbenkiania sp. strain 2002 and Paracoccus sp. strain KS1, were assessed for their ability to grow oligotrophically in simulated martian brines and in a minimal medium with olivine as a solid Fe2+ source. These simulant-derived media were developed from modelled fluids based on the geochemistry of Mars sample locations at Rocknest (contemporary Mars soil), Paso Robles (sulphur-rich soil), Haematite Slope (haematite-rich soil) and a Shergottite meteorite (common basalt). The Shergottite medium was able to support growth of all three organisms, while the contemporary Mars medium supported growth of Acidovorax sp. strain BoFeN1 and Pseudogulbenkiania sp. strain 2002; however, growth was not accompanied by significant Fe2+ oxidation. Each of the strains was also able to grow in oligotrophic minimal media with olivine as the sole Fe2+ source. Biomineralised cells of Pseudogulbenkiania sp. strain 2002 were identified on the surface of the olivine, representing a potential biosignature for NDFO microorganisms in martian samples. The results suggest that NDFO microorganisms could have thrived in early martian groundwaters under oligotrophic conditions, depending on the local lithology. This can guide missions in identifying palaeoenvironments of interest for biosignature detection. Indeed, biomineralised cells identified on the olivine surface provide a previously unexplored mechanism for the preservation of morphological biosignatures in the martian geological record.
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Affiliation(s)
- Alex Price
- School of Environment, Earth and Ecosystem Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Michael C. Macey
- School of Environment, Earth and Ecosystem Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Victoria K. Pearson
- School of Physical Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Susanne P. Schwenzer
- School of Environment, Earth and Ecosystem Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Nisha K. Ramkissoon
- School of Environment, Earth and Ecosystem Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
| | - Karen Olsson-Francis
- School of Environment, Earth and Ecosystem Sciences, Faculty of Science, Technology, Engineering, and Mathematics, The Open University, Milton Keynes, United Kingdom
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Bendia AG, Callefo F, Araújo MN, Sanchez E, Teixeira VC, Vasconcelos A, Battilani G, Pellizari VH, Rodrigues F, Galante D. Metagenome-Assembled Genomes from Monte Cristo Cave (Diamantina, Brazil) Reveal Prokaryotic Lineages As Functional Models for Life on Mars. ASTROBIOLOGY 2022; 22:293-312. [PMID: 34694925 DOI: 10.1089/ast.2021.0016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Microbial communities have been explored in various terrestrial subsurface ecosystems, showing metabolic potentials that could generate noteworthy morphological and molecular biosignatures. Recent advancements in bioinformatic tools have allowed for descriptions of novel and yet-to-be cultivated microbial lineages in different ecosystems due to the genome reconstruction approach from metagenomic data. Using shotgun metagenomic data, we obtained metagenome-assembled genomes related to cultivated and yet-to-be cultivated prokaryotic lineages from a silica and iron-rich cave (Monte Cristo) in Minas Gerais State, Brazil. The Monte Cristo Cave has been shown to possess a high diversity of genes involved with different biogeochemical cycles, including reductive and oxidative pathways related to carbon, sulfur, nitrogen, and iron. Three genomes were selected for pangenomic analysis, assigned as Truepera sp., Ca. Methylomirabilis sp., and Ca. Koribacter sp. based on their lifestyles (radiation resistance, anaerobic methane oxidation, and potential iron oxidation). These bacteria exhibit genes involved with multiple DNA repair strategies, starvation, and stress response. Because these groups have few reference genomes deposited in databases, our study adds important genomic information about these lineages. The combination of techniques applied in this study allowed us to unveil the potential relationships between microbial genomes and their ecological processes with the cave mineralogy and highlight the lineages involved with anaerobic methane oxidation, iron oxidation, and radiation resistance as functional models for the search for extant life-forms outside our planet in silica- and iron-rich environments and potentially on Mars.
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Affiliation(s)
- Amanda G Bendia
- Biological Oceanography Department, Oceanographic Institute, Universidade de São Paulo, São Paulo, Brazil
| | - Flavia Callefo
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Maicon N Araújo
- Fundamental Chemistry Department, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil
| | - Evelyn Sanchez
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Verônica C Teixeira
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
| | - Alessandra Vasconcelos
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Gislaine Battilani
- Institute of Science and Technology, Federal University of the Jequitinhonha and Mucuri, Diamantina, Brazil
| | - Vivian H Pellizari
- Biological Oceanography Department, Oceanographic Institute, Universidade de São Paulo, São Paulo, Brazil
| | - Fabio Rodrigues
- Fundamental Chemistry Department, Institute of Chemistry, Universidade de São Paulo, São Paulo, Brazil
| | - Douglas Galante
- Brazilian Synchrotron Light Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil
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Suarez EM, Lepková K, Forsyth M, Tan MY, Kinsella B, Machuca LL. In Situ Investigation of Under-Deposit Microbial Corrosion and its Inhibition Using a Multi-Electrode Array System. Front Bioeng Biotechnol 2022; 9:803610. [PMID: 35083205 PMCID: PMC8784807 DOI: 10.3389/fbioe.2021.803610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 12/13/2021] [Indexed: 11/13/2022] Open
Abstract
Carbon steel pipelines used in the oil and gas industry can be susceptible to the combined presence of deposits and microorganisms, which can result in a complex phenomenon, recently termed under-deposit microbial corrosion (UDMC). UDMC and its inhibition in CO2 ambiance were investigated in real-time using a multi-electrode array (MEA) system and surface profilometry analysis. Maps from corrosion rates, galvanic currents, and corrosion potentials recorded at each microelectrode allowed the visualization of local corrosion events on the steel surface. A marine bacterium Enterobacter roggenkampii, an iron-oxidizing, nitrate-reducing microorganism, generated iron deposits on the surface that resulted in pitting corrosion under anaerobic conditions. Areas under deposits displayed anodic behavior, more negative potentials, higher corrosion rates, and pitting compared to areas outside deposits. In the presence of the organic film-forming corrosion inhibitor, 2-Mercaptopyrimidine, the marine bacterium induced local breakdown of the protective inhibitor film and subsequent pitting corrosion of carbon steel. The ability of the MEA system to locally measure self-corrosion processes, galvanic effects and, corrosion potentials across the surface demonstrated its suitability to detect, evaluate and monitor the UDMC process as well as the efficiency of corrosion inhibitors to prevent this corrosion phenomenon. This research highlights the importance of incorporating the microbial component to corrosion inhibitors evaluation to ensure chemical effectiveness in the likely scenario of deposit formation and microbial contamination in oil and gas production equipment.
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Affiliation(s)
- Erika M Suarez
- Curtin Corrosion Centre (CCC), Western Australia School of Mines: Minerals, Energy and Chemical Engineering, Curtin University, Perth, WA, Australia
| | - Kateřina Lepková
- Curtin Corrosion Centre (CCC), Western Australia School of Mines: Minerals, Energy and Chemical Engineering, Curtin University, Perth, WA, Australia
| | - Maria Forsyth
- Institute for Frontier Materials and School of Engineering, Deakin University, Geelong, VIC, Australia
| | - Mike Y Tan
- Institute for Frontier Materials and School of Engineering, Deakin University, Geelong, VIC, Australia
| | - Brian Kinsella
- Curtin Corrosion Centre (CCC), Western Australia School of Mines: Minerals, Energy and Chemical Engineering, Curtin University, Perth, WA, Australia
| | - Laura L Machuca
- Curtin Corrosion Centre (CCC), Western Australia School of Mines: Minerals, Energy and Chemical Engineering, Curtin University, Perth, WA, Australia
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9
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Tian L, Yan B, Ou Y, Liu H, Cheng L, Jiao P. Effectiveness of Exogenous Fe 2+ on Nutrient Removal in Gravel-Based Constructed Wetlands. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19031475. [PMID: 35162498 PMCID: PMC8835606 DOI: 10.3390/ijerph19031475] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/21/2022] [Accepted: 01/22/2022] [Indexed: 11/16/2022]
Abstract
A group of microcosm-scale unplanted constructed wetlands (CWs) were established to evaluate the effectiveness of exogenous Fe2+ addition on ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3--N), and total phosphorus (TP) removal. The addition of Fe2+ concentrations were 5 mg/L (CW-Fe5), 10 mg/L (CW-Fe10), 20 mg/L (CW-Fe20), 30 mg/L (CW-Fe30), and 0 mg/L (CW-CK). The microbial community in CWs was also analyzed to reveal the enhancement mechanism of pollutant removal. The results showed that the addition of Fe2+ could significantly (p < 0.05) reduce the NO3--N concentration in the CWs. When 10 mg/L Fe2+ was added and the hydraulic retention time (HRT) was 8 h, the highest removal rate of NO3--N was 88.66%. For NH4+-N, when the HRT was 8-24 h, the removal rate of CW-Fe5 was the highest (35.23% at 8 h and 59.24% at 24 h). When the HRT was 48-72 h, the removal rate of NH4+-N in CWs with 10 mg/L Fe2+ addition was the highest (85.19% at 48 h and 88.66% and 72 h). The removal rate of TP in all CWs was higher than 57.06%, compared with CW-CK, it increased 0.63-31.62% in CWs with Fe2+ addition; the final effluent TP concentration in CW-Fe5 (0.13 mg/L) and CW-Fe10 (0.16 mg/L) met the class III water standards in Surface Water Environmental Quality Standards of China (GB3838-2002). Microbical diversity indexes, including Shannon and Chao1, were significantly lower (p < 0.05) in Fe2+ amended treatment than that in CW-CK treatment. Furthermore, phylum Firmicutes, family Carnobacteriaceae, and genus Trichococcus in Fe2+ amended treatments was significantly (p < 0.05) higher than that in CW-CK treatment. Fe3+ reducing bacteria, such as Trichococcus genus, belonging to the Carnobacteriaceae in family-level, and Lactobacillales order affiliated to Firmicutes in the phylum-level, can reduce the oxidized Fe3+ to Fe2+ and continue to provide electrons for nitrate. It is recommended to consider adding an appropriate amount of iron into the water to strengthen its purifying capacity effect for constructed artificial wetlands in the future.
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Affiliation(s)
- Liping Tian
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China;
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Baixing Yan
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China;
- Jilin Provincial Engineering Center of CWs Design in Cold Region & Beautiful Country Construction, Changchun 130102, China
- Correspondence: (B.Y.); (Y.O.)
| | - Yang Ou
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China;
- Jilin Provincial Engineering Center of CWs Design in Cold Region & Beautiful Country Construction, Changchun 130102, China
- Correspondence: (B.Y.); (Y.O.)
| | - Huiping Liu
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, China; (H.L.); (L.C.)
| | - Lei Cheng
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, China; (H.L.); (L.C.)
| | - Peng Jiao
- College of Resources and Environment, Jilin Agricultural University, Changchun 130118, China;
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10
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Kotsyurbenko OR, Cordova JA, Belov AA, Cheptsov VS, Kölbl D, Khrunyk YY, Kryuchkova MO, Milojevic T, Mogul R, Sasaki S, Słowik GP, Snytnikov V, Vorobyova EA. Exobiology of the Venusian Clouds: New Insights into Habitability through Terrestrial Models and Methods of Detection. ASTROBIOLOGY 2021; 21:1186-1205. [PMID: 34255549 PMCID: PMC9545807 DOI: 10.1089/ast.2020.2296] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 04/16/2021] [Indexed: 06/13/2023]
Abstract
The search for life beyond Earth has focused on Mars and the icy moons Europa and Enceladus, all of which are considered a safe haven for life due to evidence of current or past water. The surface of Venus, on the other hand, has extreme conditions that make it a nonhabitable environment to life as we know it. This is in contrast, however, to its cloud layer, which, while still an extreme environment, may prove to be a safe haven for some extreme forms of life similar to extremophiles on Earth. We consider the venusian clouds a habitable environment based on the presence of (1) a solvent for biochemical reactions, (2) appropriate physicochemical conditions, (3) available energy, and (4) biologically relevant elements. The diversity of extreme microbial ecosystems on Earth has allowed us to identify terrestrial chemolithoautotrophic microorganisms that may be analogs to putative venusian organisms. Here, we hypothesize and describe biological processes that may be performed by such organisms in the venusian clouds. To detect putative venusian organisms, we describe potential biosignature detection methods, which include metal-microbial interactions and optical methods. Finally, we describe currently available technology that can potentially be used for modeling and simulation experiments.
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Affiliation(s)
- Oleg R. Kotsyurbenko
- Yugra State University, The Institute of Oil and Gas, School of Ecology, Khanty-Mansiysk, Russian Federation
- Network of Researchers on the Chemical Evolution of Life, Leeds, UK
| | - Jaime A. Cordova
- Laboratory of Genetics, University of Wisconsin, Madison, Wisconsin, USA
| | - Andrey A. Belov
- Network of Researchers on the Chemical Evolution of Life, Leeds, UK
- Moscow State University, Faculty of Soil Science, Moscow, Russian Federation
| | - Vladimir S. Cheptsov
- Network of Researchers on the Chemical Evolution of Life, Leeds, UK
- Moscow State University, Faculty of Soil Science, Moscow, Russian Federation
- Space Research Institute, Russian Academy of Sciences, Moscow, Russian Federation
| | - Denise Kölbl
- Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria
| | - Yuliya Y. Khrunyk
- Department of Heat Treatment and Physics of Metal, Ural Federal University, Ekaterinburg, Russian Federation
- M.N. Mikheev Institute of Metal Physics of the Ural Branch of the Russian Academy of Sciences, Ekaterinburg, Russian Federation
| | - Margarita O. Kryuchkova
- Network of Researchers on the Chemical Evolution of Life, Leeds, UK
- Moscow State University, Faculty of Soil Science, Moscow, Russian Federation
| | - Tetyana Milojevic
- Space Biochemistry Group, Department of Biophysical Chemistry, University of Vienna, Vienna, Austria
| | - Rakesh Mogul
- Chemistry and Biochemistry Department, California State Polytechnic University, Pomona, California, USA
| | - Satoshi Sasaki
- School of Biosciences and Biotechnology/School of Health Sciences, Tokyo University of Technology, Hachioji, Tokyo, Japan
| | - Grzegorz P. Słowik
- Institute of Materials and Biomedical Engineering, Faculty of Mechanical Engineering, University of Zielona Góra, Zielona Góra, Poland
| | - Valery Snytnikov
- Boreskov Institute of Catalysis, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russian Federation
- Novosibirsk State University, Novosibirsk, Russian Federation
| | - Elena A. Vorobyova
- Network of Researchers on the Chemical Evolution of Life, Leeds, UK
- Moscow State University, Faculty of Soil Science, Moscow, Russian Federation
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11
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Moreras-Marti A, Fox-Powell M, Zerkle AL, Stueeken E, Gazquez F, Brand HEA, Galloway T, Purkamo L, Cousins CR. Volcanic controls on the microbial habitability of Mars-analogue hydrothermal environments. GEOBIOLOGY 2021; 19:489-509. [PMID: 34143931 DOI: 10.1111/gbi.12459] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 05/22/2021] [Indexed: 06/12/2023]
Abstract
Due to their potential to support chemolithotrophic life, relic hydrothermal systems on Mars are a key target for astrobiological exploration. We analysed water and sediments at six geothermal pools from the rhyolitic Kerlingarfjöll and basaltic Kverkfjöll volcanoes in Iceland, to investigate the localised controls on the habitability of these systems in terms of microbial community function. Our results show that host lithology plays a minor role in pool geochemistry and authigenic mineralogy, with the system geochemistry primarily controlled by deep volcanic processes. We find that by dictating pool water pH and redox conditions, deep volcanic processes are the primary control on microbial community structure and function, with water input from the proximal glacier acting as a secondary control by regulating pool temperatures. Kerlingarfjöll pools have reduced, circum-neutral CO2 -rich waters with authigenic calcite-, pyrite- and kaolinite-bearing sediments. The dominant metabolisms inferred from community profiles obtained by 16S rRNA gene sequencing are methanogenesis, respiration of sulphate and sulphur (S0 ) oxidation. In contrast, Kverkfjöll pools have oxidised, acidic (pH < 3) waters with high concentrations of SO42- and high argillic alteration, resulting in Al-phyllosilicate-rich sediments. The prevailing metabolisms here are iron oxidation, sulphur oxidation and nitrification. Where analogous ice-fed hydrothermal systems existed on early Mars, similar volcanic processes would likely have controlled localised metabolic potential and thus habitability. Moreover, such systems offer several habitability advantages, including a localised source of metabolic redox pairs for chemolithotrophic microorganisms and accessible trace metals. Similar pools could have provided transient environments for life on Mars; when paired with surface or near-surface ice, these habitability niches could have persisted into the Amazonian. Additionally, they offer a confined site for biosignature formation and deposition that lends itself well to in situ robotic exploration.
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Affiliation(s)
- Arola Moreras-Marti
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
| | - Mark Fox-Powell
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
- AstrobiologyOU, The Open University, Milton Keynes, UK
| | - Aubrey L Zerkle
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
| | - Eva Stueeken
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
| | - Fernando Gazquez
- Water Resources and Environmental Geology Research Group, Department of Biology and Geology, University of Almería, Almería, Spain
| | | | - Toni Galloway
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
| | | | - Claire R Cousins
- School of Earth and Environmental Sciences, University of St Andrews, St Andrews, UK
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12
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A Review of the Phyllosilicates in Gale Crater as Detected by the CheMin Instrument on the Mars Science Laboratory, Curiosity Rover. MINERALS 2021. [DOI: 10.3390/min11080847] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Curiosity, the Mars Science Laboratory (MSL) rover, landed on Mars in August 2012 to investigate the ~3.5-billion-year-old (Ga) fluvio-lacustrine sedimentary deposits of Aeolis Mons (informally known as Mount Sharp) and the surrounding plains (Aeolis Palus) in Gale crater. After nearly nine years, Curiosity has traversed over 25 km, and the Chemistry and Mineralogy (CheMin) X-ray diffraction instrument on-board Curiosity has analyzed 30 drilled rock and three scooped soil samples to date. The principal strategic goal of the mission is to assess the habitability of Mars in its ancient past. Phyllosilicates are common in ancient Martian terrains dating to ~3.5–4 Ga and were detected from orbit in some of the lower strata of Mount Sharp. Phyllosilicates on Earth are important for harboring and preserving organics. On Mars, phyllosilicates are significant for exploration as they are hypothesized to be a marker for potential habitable environments. CheMin data demonstrate that ancient fluvio-lacustrine rocks in Gale crater contain up to ~35 wt. % phyllosilicates. Phyllosilicates are key indicators of past fluid–rock interactions, and variation in the structure and composition of phyllosilicates in Gale crater suggest changes in past aqueous environments that may have been habitable to microbial life with a variety of possible energy sources.
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13
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Clark BC, Kolb VM, Steele A, House CH, Lanza NL, Gasda PJ, VanBommel SJ, Newsom HE, Martínez-Frías J. Origin of Life on Mars: Suitability and Opportunities. Life (Basel) 2021; 11:539. [PMID: 34207658 PMCID: PMC8227854 DOI: 10.3390/life11060539] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 05/28/2021] [Accepted: 06/01/2021] [Indexed: 02/07/2023] Open
Abstract
Although the habitability of early Mars is now well established, its suitability for conditions favorable to an independent origin of life (OoL) has been less certain. With continued exploration, evidence has mounted for a widespread diversity of physical and chemical conditions on Mars that mimic those variously hypothesized as settings in which life first arose on Earth. Mars has also provided water, energy sources, CHNOPS elements, critical catalytic transition metal elements, as well as B, Mg, Ca, Na and K, all of which are elements associated with life as we know it. With its highly favorable sulfur abundance and land/ocean ratio, early wet Mars remains a prime candidate for its own OoL, in many respects superior to Earth. The relatively well-preserved ancient surface of planet Mars helps inform the range of possible analogous conditions during the now-obliterated history of early Earth. Continued exploration of Mars also contributes to the understanding of the opportunities for settings enabling an OoL on exoplanets. Favoring geochemical sediment samples for eventual return to Earth will enhance assessments of the likelihood of a Martian OoL.
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Affiliation(s)
| | - Vera M. Kolb
- Department of Chemistry, University of Wisconsin—Parkside, Kenosha, WI 53141, USA;
| | - Andrew Steele
- Earth and Planetary Laboratory, Carnegie Institution for Science, Washington, DC 20015, USA;
| | - Christopher H. House
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, State College, PA 16807, USA;
| | - Nina L. Lanza
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (N.L.L.); (P.J.G.)
| | - Patrick J. Gasda
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (N.L.L.); (P.J.G.)
| | - Scott J. VanBommel
- Department of Earth and Planetary Sciences, Washington University in St. Louis, St. Louis, MO 63130, USA;
| | - Horton E. Newsom
- Institute of Meteoritics, Department of Earth and Planetary Sciences, University of New Mexico, Albuquerque, NM 88033, USA;
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14
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Thermodynamic Constraints on Smectite and Iron Oxide Formation at Gale Crater, Mars: Insights into Potential Free Energy from Aerobic Fe Oxidation in Lake Water–Groundwater Mixing Zone. MINERALS 2021. [DOI: 10.3390/min11040341] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The presence of saponite and iron oxides in Sheepbed mudstone of Yellowknife Bay at Gale crater on Mars is considered as evidence of a habitable fluvio-lacustrine environment for chemolithoautotrophy. However, the energetic availability for metabolic reactions is poorly constrained. Herein, we propose the possible mixing of surface water and groundwater that (i) explains the formation of magnetite and hematite detected in Sheepbed mudstone and (ii) may work as a potential habitable zone for aerobic Fe2+-oxidizing microbes. Our thermodynamic modeling of water–rock reactions revealed that the formation of abundant saponite in Sheepbed mudstone may occur under various conditions of water-to-rock mass ratios, temperatures (5–200 °C), and initial fluid compositions. In contrast, the formation of iron oxides in the mudstone can be explained only by the mixing of Fe2+-rich groundwater and more oxidized surface waters, where the Fe2+-rich groundwater can be generated by the low-temperature water–rock reactions with a CO2-bearing initial fluid. The calculated bioavailable energy of aerobic Fe2+ oxidation in the fluid-mixing zone on Mars is similar to that estimated for a fluid-mixing zone on Earth actually inhabited by aerobic Fe2+-oxidizing microbes. The findings will contribute to a better understanding of potential habitability on Mars.
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15
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Bashir AK, Wink L, Duller S, Schwendner P, Cockell C, Rettberg P, Mahnert A, Beblo-Vranesevic K, Bohmeier M, Rabbow E, Gaboyer F, Westall F, Walter N, Cabezas P, Garcia-Descalzo L, Gomez F, Malki M, Amils R, Ehrenfreund P, Monaghan E, Vannier P, Marteinsson V, Erlacher A, Tanski G, Strauss J, Bashir M, Riedo A, Moissl-Eichinger C. Taxonomic and functional analyses of intact microbial communities thriving in extreme, astrobiology-relevant, anoxic sites. MICROBIOME 2021; 9:50. [PMID: 33602336 PMCID: PMC7893877 DOI: 10.1186/s40168-020-00989-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 12/29/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND Extreme terrestrial, analogue environments are widely used models to study the limits of life and to infer habitability of extraterrestrial settings. In contrast to Earth's ecosystems, potential extraterrestrial biotopes are usually characterized by a lack of oxygen. METHODS In the MASE project (Mars Analogues for Space Exploration), we selected representative anoxic analogue environments (permafrost, salt-mine, acidic lake and river, sulfur springs) for the comprehensive analysis of their microbial communities. We assessed the microbiome profile of intact cells by propidium monoazide-based amplicon and shotgun metagenome sequencing, supplemented with an extensive cultivation effort. RESULTS The information retrieved from microbiome analyses on the intact microbial community thriving in the MASE sites, together with the isolation of 31 model microorganisms and successful binning of 15 high-quality genomes allowed us to observe principle pathways, which pinpoint specific microbial functions in the MASE sites compared to moderate environments. The microorganisms were characterized by an impressive machinery to withstand physical and chemical pressures. All levels of our analyses revealed the strong and omnipresent dependency of the microbial communities on complex organic matter. Moreover, we identified an extremotolerant cosmopolitan group of 34 poly-extremophiles thriving in all sites. CONCLUSIONS Our results reveal the presence of a core microbiome and microbial taxonomic similarities between saline and acidic anoxic environments. Our work further emphasizes the importance of the environmental, terrestrial parameters for the functionality of a microbial community, but also reveals a high proportion of living microorganisms in extreme environments with a high adaptation potential within habitability borders. Video abstract.
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Affiliation(s)
- Alexandra Kristin Bashir
- Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria
- Department of Microbiology and Archaea Center, University of Regensburg, Regensburg, Germany
| | - Lisa Wink
- Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria
| | - Stefanie Duller
- Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria
| | - Petra Schwendner
- UK Center for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Charles Cockell
- UK Center for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Petra Rettberg
- Institute of Aerospace Medicine, Radiation Biology Department, German Aerospace Center (DLR), Cologne, Germany
| | - Alexander Mahnert
- Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria
| | - Kristina Beblo-Vranesevic
- Institute of Aerospace Medicine, Radiation Biology Department, German Aerospace Center (DLR), Cologne, Germany
| | - Maria Bohmeier
- Institute of Aerospace Medicine, Radiation Biology Department, German Aerospace Center (DLR), Cologne, Germany
| | - Elke Rabbow
- Institute of Aerospace Medicine, Radiation Biology Department, German Aerospace Center (DLR), Cologne, Germany
| | - Frederic Gaboyer
- Centre de Biophysique Moléculaire, Centre National de la Recherché Scientifique (CNRS), Orléans, France
| | - Frances Westall
- Centre de Biophysique Moléculaire, Centre National de la Recherché Scientifique (CNRS), Orléans, France
| | | | | | - Laura Garcia-Descalzo
- Instituto Nacional de Técnica Aeroespacial – Centro de Astrobiología (INTA-CAB), Madrid, Spain
| | - Felipe Gomez
- Instituto Nacional de Técnica Aeroespacial – Centro de Astrobiología (INTA-CAB), Madrid, Spain
| | - Mustapha Malki
- Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (UAM), Madrid, Spain
| | - Ricardo Amils
- Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (UAM), Madrid, Spain
| | | | - Euan Monaghan
- Leiden Observatory, Universiteit Leiden, Leiden, The Netherlands
| | | | - Viggo Marteinsson
- MATIS, Reykjavík, Iceland
- Faculty of Food Science and Nutrition, University of Iceland, Reykjavik, Iceland
| | - Armin Erlacher
- Institute of Environmental Biotechnology, Graz University of Technology, Graz, Austria
| | - George Tanski
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Periglacial Research Unit, Potsdam, Germany
| | - Jens Strauss
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Periglacial Research Unit, Potsdam, Germany
| | - Mina Bashir
- Division of Endocrinology and Metabolism, Department of Internal Medicine, Graz, Austria
| | - Andreas Riedo
- Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, Leiden, The Netherlands
| | - Christine Moissl-Eichinger
- Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz, Graz, Austria
- BioTechMed, Graz, Austria
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16
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Schwendner P, Jobson ME, Schuerger AC. Addition of anaerobic electron acceptors to solid media did not enhance growth of 125 spacecraft bacteria under simulated low-pressure Martian conditions. Sci Rep 2020; 10:18290. [PMID: 33106561 PMCID: PMC7588431 DOI: 10.1038/s41598-020-75222-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 10/06/2020] [Indexed: 11/25/2022] Open
Abstract
To protect Mars from microbial contamination, research on growth of microorganisms found in spacecraft assembly clean rooms under simulated Martian conditions is required. This study investigated the effects of low atmospheric pressure on the growth of chemoorganotrophic spacecraft bacteria and whether the addition of Mars relevant anaerobic electron acceptors might enhance growth. The 125 bacteria screened here were recovered from actual Mars spacecraft. Growth at 7 hPa, 0 °C, and a CO2-enriched anoxic atmosphere (called low-PTA conditions) was tested on five TSA-based media supplemented with anaerobic electron acceptors. None of the 125 spacecraft bacteria showed active growth under the tested low-PTA conditions and amended media. In contrast, a decrease in viability was observed in most cases. Growth curves of two hypopiezotolerant strains, Serratia liquefaciens and Trichococcus pasteurii, were performed to quantify the effects of the added anaerobic electron acceptors. Slight variations in growth rates were determined for both bacteria. However, the final cell densities were similar for all media tested, indicating no general preference for any specific anaerobic electron acceptor. By demonstrating that a broad diversity of chemoorganotrophic and culturable spacecraft bacteria do not grow under the tested conditions, we conclude that there may be low risk of growth of chemoorganotrophic bacteria typically recovered from Mars spacecraft during planetary protection bioburden screenings.
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Affiliation(s)
- Petra Schwendner
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA.
| | - Mary-Elizabeth Jobson
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA
| | - Andrew C Schuerger
- Space Life Sciences Lab, University of Florida, 505 Odyssey Way, Exploration Park, Merritt Island, FL, 32953, USA
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17
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Macey MC, Fox-Powell M, Ramkissoon NK, Stephens BP, Barton T, Schwenzer SP, Pearson VK, Cousins CR, Olsson-Francis K. The identification of sulfide oxidation as a potential metabolism driving primary production on late Noachian Mars. Sci Rep 2020; 10:10941. [PMID: 32616785 PMCID: PMC7331718 DOI: 10.1038/s41598-020-67815-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 06/15/2020] [Indexed: 01/11/2023] Open
Abstract
The transition of the martian climate from the wet Noachian era to the dry Hesperian (4.1-3.0 Gya) likely resulted in saline surface waters that were rich in sulfur species. Terrestrial analogue environments that possess a similar chemistry to these proposed waters can be used to develop an understanding of the diversity of microorganisms that could have persisted on Mars under such conditions. Here, we report on the chemistry and microbial community of the highly reducing sediment of Colour Peak springs, a sulfidic and saline spring system located within the Canadian High Arctic. DNA and cDNA 16S rRNA gene profiling demonstrated that the microbial community was dominated by sulfur oxidising bacteria, suggesting that primary production in the sediment was driven by chemolithoautotrophic sulfur oxidation. It is possible that the sulfur oxidising bacteria also supported the persistence of the additional taxa. Gibbs energy values calculated for the brines, based on the chemistry of Gale crater, suggested that the oxidation of reduced sulfur species was an energetically viable metabolism for life on early Mars.
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Affiliation(s)
- M C Macey
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK.
| | - M Fox-Powell
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
- School of Earth and Environmental Sciences, University of St Andrews, Irvine Building, St Andrews, UK
| | - N K Ramkissoon
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - B P Stephens
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - T Barton
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - S P Schwenzer
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - V K Pearson
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
| | - C R Cousins
- School of Earth and Environmental Sciences, University of St Andrews, Irvine Building, St Andrews, UK
| | - K Olsson-Francis
- AstrobiologyOU, Faculty of Science, Technology, Engineering and Mathematics, The Open University, Milton Keynes, UK
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18
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Costello LJ, Filiberto J, Crandall JR, Potter-McIntyre SL, Schwenzer SP, Miller MA, Hummer DR, Olsson-Francis K, Perl S. Habitability of Hydrothermal Systems at Jezero and Gusev Craters as Constrained by Hydrothermal Alteration of a Terrestrial Mafic Dike. CHEMIE DER ERDE : BEITRAGE ZUR CHEMISCHEN MINERALOGIE, PETROGRAPHIE UND GEOLOGIE 2020; 80:125613. [PMID: 33299255 PMCID: PMC7720477 DOI: 10.1016/j.chemer.2020.125613] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
NASA's search for habitable environments has focused on alteration mineralogy of the Martian crust and the formation of hydrous minerals, because they reveal information about the fluid and environmental conditions from which they precipitated. Extensive work has focused on the formation of alteration minerals at low temperatures, with limited work investigating metamorphic or high-temperature alteration. We have investigated such a site as an analog for Mars: a mafic dike on the Colorado Plateau that was hydrothermally altered from contact with groundwater as it was emplaced in the porous and permeable Jurassic Entrada sandstone. Our results show evidence for fluid mobility removing Si and K but adding S, Fe, Ca, and possibly Mg to the system as alteration progresses. Mineralogically, all samples contain calcite, hematite, and kaolinite; with most samples containing minor anatase, barite, halite, and dolomite. The number of alteration minerals increase with alteration. The hydrothermal system that formed during interaction of the magma (heat source) and groundwater would have been a habitable environment once the system cooled below ~120° C. The mineral assemblage is similar to alteration minerals seen within the Martian crust from orbit, including those at Gusev and Jezero Craters. Therefore, based on our findings, and extrapolating them to the Martian crust, these sites may represent habitable environments which would call for further exploration and sample return of such hydrothermally altered igneous materials.
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Affiliation(s)
- Lacey J. Costello
- Southern Illinois University, Department of Geology, 1259 Lincoln Drive, Carbondale, IL 62901, USA
| | - Justin Filiberto
- Lunar and Planetary Institute, USRA, 3600 Bay Area Blvd., Houston, TX 77058, USA
| | - Jake R. Crandall
- Eastern Illinois University, Department of Geology and Geography, Physical Science Building, 600 Lincoln Ave., Charleston, IL 61920, USA
| | - Sally L. Potter-McIntyre
- Southern Illinois University, Department of Geology, 1259 Lincoln Drive, Carbondale, IL 62901, USA
| | - Susanne P. Schwenzer
- School of Environment, Earth, and Ecosystems Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - Michael A. Miller
- Materials Engineering Department, Southwest Research Institute, 6220 Culebra Road, San Antonio, TX 78238, USA
| | - Daniel R. Hummer
- Southern Illinois University, Department of Geology, 1259 Lincoln Drive, Carbondale, IL 62901, USA
| | - Karen Olsson-Francis
- School of Environment, Earth, and Ecosystems Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
| | - Scott Perl
- Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr, Pasadena, CA 91109-8001, USA
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Onstott T, Ehlmann B, Sapers H, Coleman M, Ivarsson M, Marlow J, Neubeck A, Niles P. Paleo-Rock-Hosted Life on Earth and the Search on Mars: A Review and Strategy for Exploration. ASTROBIOLOGY 2019; 19:1230-1262. [PMID: 31237436 PMCID: PMC6786346 DOI: 10.1089/ast.2018.1960] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Accepted: 04/25/2019] [Indexed: 05/19/2023]
Abstract
Here we review published studies on the abundance and diversity of terrestrial rock-hosted life, the environments it inhabits, the evolution of its metabolisms, and its fossil biomarkers to provide guidance in the search for life on Mars. Key findings are (1) much terrestrial deep subsurface metabolic activity relies on abiotic energy-yielding fluxes and in situ abiotic and biotic recycling of metabolic waste products rather than on buried organic products of photosynthesis; (2) subsurface microbial cell concentrations are highest at interfaces with pronounced chemical redox gradients or permeability variations and do not correlate with bulk host rock organic carbon; (3) metabolic pathways for chemolithoautotrophic microorganisms evolved earlier in Earth's history than those of surface-dwelling phototrophic microorganisms; (4) the emergence of the former occurred at a time when Mars was habitable, whereas the emergence of the latter occurred at a time when the martian surface was not continually habitable; (5) the terrestrial rock record has biomarkers of subsurface life at least back hundreds of millions of years and likely to 3.45 Ga with several examples of excellent preservation in rock types that are quite different from those preserving the photosphere-supported biosphere. These findings suggest that rock-hosted life would have been more likely to emerge and be preserved in a martian context. Consequently, we outline a Mars exploration strategy that targets subsurface life and scales spatially, focusing initially on identifying rocks with evidence for groundwater flow and low-temperature mineralization, then identifying redox and permeability interfaces preserved within rock outcrops, and finally focusing on finding minerals associated with redox reactions and associated traces of carbon and diagnostic chemical and isotopic biosignatures. Using this strategy on Earth yields ancient rock-hosted life, preserved in the fossil record and confirmable via a suite of morphologic, organic, mineralogical, and isotopic fingerprints at micrometer scale. We expect an emphasis on rock-hosted life and this scale-dependent strategy to be crucial in the search for life on Mars.
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Affiliation(s)
- T.C. Onstott
- Department of Geosciences, Princeton University, Princeton, New Jersey, USA
- Address correspondence to: T.C. Onstott, Department of Geosciences, Princeton University,, Princeton, NJ 008544
| | - B.L. Ehlmann
- Division of Geological & Planetary Sciences, California Institute of Technology, Pasadena, California, USA
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- B.L. Ehlmann, Division of Geological & Planetary Sciences, California Institute of Technology, Pasadena, CA 91125
| | - H. Sapers
- Division of Geological & Planetary Sciences, California Institute of Technology, Pasadena, California, USA
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Department of Earth Sciences, University of Southern California, Los Angeles, California, USA
| | - M. Coleman
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- NASA Astrobiology Institute, Pasadena, California, USA
| | - M. Ivarsson
- Department of Biology, University of Southern Denmark, Odense, Denmark
| | - J.J. Marlow
- Department of Organismic & Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA
| | - A. Neubeck
- Department of Earth Sciences, Uppsala University, Uppsala, Sweden
| | - P. Niles
- Astromaterials Research and Exploration Science Division, NASA Johnson Space Center, Houston, Texas, USA
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20
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McMahon S, Ivarsson M. A New Frontier for Palaeobiology: Earth's Vast Deep Biosphere. Bioessays 2019; 41:e1900052. [PMID: 31241200 DOI: 10.1002/bies.201900052] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2019] [Revised: 04/29/2019] [Indexed: 11/11/2022]
Abstract
Diverse micro-organisms populate a global deep biosphere hosted by rocks and sediments beneath land and sea, containing more biomass than any other biome except forests. This paper reviews an emerging palaeobiological archive of these dark habitats: microfossils preserved in ancient pores and fractures in the crust. This archive, seemingly dominated by mineralized filaments (although rods and coccoids are also reported), is presently far too sparsely sampled and poorly understood to reveal trends in the abundance, distribution, or diversity of deep life through time. New research is called for to establish the nature and extent of the fossil record of Earth's deep biosphere by combining systematic exploration, rigorous microanalysis, and experimental studies of both microbial preservation and the formation of abiotic pseudofossils within the crust. It is concluded that the fossil record of Earth's largest microbial habitat may still have much to tell us about the history of life, the evolution of biogeochemical cycles, and the search for life on Mars.
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Affiliation(s)
- Sean McMahon
- School of Geosciences, University of Edinburgh, Edinburgh, EH8 9XP, UK.,UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, EH9 3FD, UK
| | - Magnus Ivarsson
- Department of Biology, University of Southern Denmark, DK-5230, Odense, Denmark.,Department of Palaeobiology, Swedish Museum of Natural History, Stockholm, SE-104 05, Sweden
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21
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Parro V, Puente-Sánchez F, Cabrol NA, Gallardo-Carreño I, Moreno-Paz M, Blanco Y, García-Villadangos M, Tambley C, Tilot VC, Thompson C, Smith E, Sobrón P, Demergasso CS, Echeverría-Vega A, Fernández-Martínez MÁ, Whyte LG, Fairén AG. Microbiology and Nitrogen Cycle in the Benthic Sediments of a Glacial Oligotrophic Deep Andean Lake as Analog of Ancient Martian Lake-Beds. Front Microbiol 2019; 10:929. [PMID: 31130930 PMCID: PMC6509559 DOI: 10.3389/fmicb.2019.00929] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 04/12/2019] [Indexed: 02/06/2023] Open
Abstract
Potential benthic habitats of early Mars lakes, probably oligotrophic, could range from hydrothermal to cold sediments. Dynamic processes in the water column (such as turbidity or UV penetration) as well as in the benthic bed (temperature gradients, turbation, or sedimentation rate) contribute to supply nutrients to a potential microbial ecosystem. High altitude, oligotrophic, and deep Andean lakes with active deglaciation processes and recent or past volcanic activity are natural models to assess the feasibility of life in other planetary lake/ocean environments and to develop technology for their exploration. We sampled the benthic sediments (down to 269 m depth) of the oligotrophic lake Laguna Negra (Central Andes, Chile) to investigate its ecosystem through geochemical, biomarker profiling, and molecular ecology studies. The chemistry of the benthic water was similar to the rest of the water column, except for variable amounts of ammonium (up to 2.8 ppm) and nitrate (up to 0.13 ppm). A life detector chip with a 300-antibody microarray revealed the presence of biomass in the form of exopolysaccharides and other microbial markers associated to several phylogenetic groups and potential microaerobic and anaerobic metabolisms such as nitrate reduction. DNA analyses showed that 27% of the Archaea sequences corresponded to a group of ammonia-oxidizing archaea (AOA) similar (97%) to Nitrosopumilus spp. and Nitrosoarchaeum spp. (Thaumarchaeota), and 4% of Bacteria sequences to nitrite-oxidizing bacteria from the Nitrospira genus, suggesting a coupling between ammonia and nitrite oxidation. Mesocosm experiments with the specific AOA inhibitor 2-Phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl 3-oxide (PTIO) demonstrated an AOA-associated ammonia oxidation activity with the simultaneous accumulation of nitrate and sulfate. The results showed a rich benthic microbial community dominated by microaerobic and anaerobic metabolisms thriving under aphotic, low temperature (4°C), and relatively high pressure, that might be a suitable terrestrial analog of other planetary settings.
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Affiliation(s)
- Victor Parro
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
| | | | - Nathalie A. Cabrol
- SETI Institute, Carl Sagan Center, Mountain View, CA, United States
- NASA Ames Research Center, Mountain View, CA, United States
| | | | | | | | | | | | - Virginie C. Tilot
- Instituto Español de Oceanografía (IEO), Málaga, Spain
- Muséum National d’Histoire Naturelle, Paris, France
| | - Cody Thompson
- School of Environmental Sciences, University of Guelph, Guelph, ON, Canada
| | - Eric Smith
- SETI Institute, Carl Sagan Center, Mountain View, CA, United States
| | - Pablo Sobrón
- SETI Institute, Carl Sagan Center, Mountain View, CA, United States
| | | | - Alex Echeverría-Vega
- Centro de Biotecnología, Universidad Católica del Norte, Antofagasta, Chile
- Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca, Chile
| | | | - Lyle G. Whyte
- Department of Natural Resource Sciences, McGill University, Montreal, QC, Canada
| | - Alberto G. Fairén
- Centro de Astrobiología (CSIC-INTA), Madrid, Spain
- Department of Astronomy, Cornell University, Ithaca, NY, United States
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22
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Liu T, Chen D, Li X, Li F. Microbially mediated coupling of nitrate reduction and Fe(II) oxidation under anoxic conditions. FEMS Microbiol Ecol 2019; 95:5371120. [DOI: 10.1093/femsec/fiz030] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 03/06/2019] [Indexed: 11/12/2022] Open
Affiliation(s)
- Tongxu Liu
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
| | - Dandan Chen
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
- Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Xiaomin Li
- The Environmental Research Institute, MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Fangbai Li
- Guangzhou Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, P. R. China
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Draft Genome Sequences of the Nitrate-Dependent Iron-Oxidizing Proteobacteria Acidovorax sp. Strain BoFeN1 and Paracoccus pantotrophus Strain KS1. Microbiol Resour Announc 2018; 7:MRA01050-18. [PMID: 30533623 PMCID: PMC6256601 DOI: 10.1128/mra.01050-18] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 08/15/2018] [Indexed: 12/03/2022] Open
Abstract
The draft genomes of the nitrate-dependent iron-oxidizing bacteria Acidovorax sp. strain BoFeN1 and Paracoccus pantotrophus strain KS1 are presented. The draft genomes of the nitrate-dependent iron-oxidizing bacteria Acidovorax sp. strain BoFeN1 and Paracoccus pantotrophus strain KS1 are presented. These genomes supply supporting data to investigations of the mechanisms underlying this anaerobic form of microbial biogeochemical iron cycling.
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