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Tan L, Cheng J, Zhang L, Backe J, Urbanowicz B, Heiss C, Azadi P. Pectic-AGP is a major form of Arabidopsis AGPs. Carbohydr Polym 2024; 330:121838. [PMID: 38368088 DOI: 10.1016/j.carbpol.2024.121838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Accepted: 01/16/2024] [Indexed: 02/19/2024]
Abstract
As a key component in cell walls of numerous organisms ranging from green algae to higher plants, AGPs play principal roles in many biological processes such as cell-cell adhesion and regulating Ca2+ signaling pathway as a Ca2+-capacitor. Consistently, AGP structures vary from species to species and from tissue to tissue. To understand the functions of AGPs, it is vital to know their structural differences relative to their location in the plant. Thus, AGPs were purified from different Arabidopsis tissues. Analyses of these AGPs demonstrated that the AGPs comprised covalently linked pectin and AGP, referred to as pectic-AGPs. Importantly, these pectic-AGPs were glycosylated with a remarkable variety of polysaccharides including homogalacturonan, rhamnogalacturonan-I, and type II arabinogalactan at different ratios and lengths. This result not only suggests that pectic-AGP is a major form of Arabidopsis AGPs, but also supports AGPs serve as crosslinkers covalently connecting pectins with structures tailored for tissue-specific functions.
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Affiliation(s)
- Li Tan
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America.
| | - Jielun Cheng
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
| | - Liang Zhang
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
| | - Jason Backe
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
| | - Breeanna Urbanowicz
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
| | - Christian Heiss
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
| | - Parastoo Azadi
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America; DOE Center for Plant and Microbial Complex Carbohydrates, University of Georgia, 315 Riverbend Road, Athens, GA 30602, United States of America
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Liu G, Wang H, Ran R, Wang Y, Li Y. TRIP13 Activates Glycolysis to Promote Cell Stemness and Strengthen Doxorubicin Resistance of Colorectal Cancer Cells. Curr Med Chem 2024; 31:3397-3411. [PMID: 38347785 DOI: 10.2174/0109298673255498231117100421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 08/23/2023] [Accepted: 10/24/2023] [Indexed: 03/07/2024]
Abstract
BACKGROUND Chemotherapy resistance is one of the main causes of clinical chemotherapy failure. Current cancer research explores the drug resistance mechanism and new therapeutic targets. This work aims to elucidate the mechanism of thyroid hormone receptor interactor 13 (TRIP13) affecting doxorubicin (DOX) resistance in colorectal cancer (CRC). METHODS Bioinformatics analyses were employed to clarify TRIP13 expression in CRC tissues and predict the correlation of the TRIP13 enrichment pathway with glycolysis-related genes and stemness index mRNAsi. Quantitative real-time polymerase chain reaction and western blot were adopted to analyze the expression of TRIP13 and glycolysis- related genes. Cell Counting Kit-8 was utilized to determine the cell viability and IC50 value. Western blot was employed to measure the expression of stemness-related factors. Cell function assays were performed to detect cells' sphere-forming ability and glycolysis level. Animal models were constructed to determine the effects of TRIP13 expression on CRC tumor growth. RESULTS TRIP13 was significantly overexpressed in CRC, concentrated in the glycolysis signaling pathway, and positively correlated with stemness index mRNAsi. High expression of TRIP13 facilitated DOX resistance in CRC. Further mechanistic studies revealed that overexpression of TRIP13 could promote cell stemness through glycolysis, which was also confirmed in animal experiments. CONCLUSION TRIP13 was highly expressed in CRC, which enhanced the DOX resistance of CRC cells by activating glycolysis to promote cell stemness. These findings offer new insights into the pathogenesis of DOX resistance in CRC and suggest that TRIP13 may be a new target for reversing DOX resistance in CRC.
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Affiliation(s)
- Guangyi Liu
- Department of Gastrointestinal Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
| | - Huan Wang
- Department of Health Management Center, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
| | - Rui Ran
- Department of Gastrointestinal Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
| | - Yicheng Wang
- Department of Gastrointestinal Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
| | - Yang Li
- Department of Gastrointestinal Surgery, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, 400010, China
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Zhang L, Zheng L, Wu J, Liu Y, Liu W, He G, Wang N. OsCCRL1 is Essential for Phenylpropanoid Metabolism in Rice Anthers. RICE (NEW YORK, N.Y.) 2023; 16:10. [PMID: 36847882 PMCID: PMC9971536 DOI: 10.1186/s12284-023-00628-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
Phenylpropanoid metabolism and timely tapetal degradation are essential for anther and pollen development, but the underlying mechanisms are unclear. In the current study, to investigate this, we identified and analyzed the male-sterile mutant, osccrl1 (cinnamoyl coA reductase-like 1), which exhibited delayed tapetal programmed cell death (PCD) and defective mature pollen. Map-based cloning, genetic complementation, and gene knockout revealed that OsCCRL1 corresponds to the gene LOC_Os09g32020.2, a member of SDR (short-chain dehydrogenase/reductase) family enzyme. OsCCRL1 was preferentially expressed in the tapetal cells and microspores, and localized to the nucleus and cytoplasm in both rice protoplasts and Nicotiana benthamiana leaves. The osccrl1 mutant exhibited reduced CCRs enzyme activity, less lignin accumulation, delayed tapetum degradation, and disrupted phenylpropanoid metabolism. Furthermore, an R2R3 MYB transcription factor OsMYB103/OsMYB80/OsMS188/BM1, involved in tapetum and pollen development, regulates the expression of OsCCRL1. Finally, the osmyb103 osccrl1 double mutants, exhibited the same phenotype as the osmyb103 single mutant, further indicating that OsMYB103/OsMYB80/OsMS188/BM1 functions upstream of OsCCRL1. These findings help to clarify the role of phenylpropanoid metabolism in male sterility and the regulatory network underlying the tapetum degradation.
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Affiliation(s)
- Lisha Zhang
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China
| | - Lintao Zheng
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China
| | - Jingwen Wu
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China
| | - Yang Liu
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China
| | - Weichi Liu
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China
| | - Guanghua He
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China.
| | - Nan Wang
- Key Laboratory of Application and Safety Control of Genetically Modified Crops, College of Agronomy and Biotechnology, Rice Research Institute, Southwest University, Chongqing, 400715, China.
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Luo F, Zhang Q, Xin H, Liu H, Yang H, Doblin MS, Bacic A, Li L. A Phytochrome B-PIF4-MYC2/MYC4 module inhibits secondary cell wall thickening in response to shaded light. PLANT COMMUNICATIONS 2022; 3:100416. [PMID: 35927944 PMCID: PMC9700123 DOI: 10.1016/j.xplc.2022.100416] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 06/21/2022] [Accepted: 07/25/2022] [Indexed: 06/01/2023]
Abstract
Secondary cell walls (SCWs) in stem cells provide mechanical strength and structural support for growth. SCW thickening varies under different light conditions. Our previous study revealed that blue light enhances SCW thickening through the redundant function of MYC2 and MYC4 directed by CRYPTOCHROME1 (CRY1) signaling in fiber cells of the Arabidopsis inflorescence stem. In this study, we find that the Arabidopsis PHYTOCHROME B mutant phyB displays thinner SCWs in stem fibers, but thicker SCWs are deposited in the PHYTOCHROME INTERACTING FACTOR (PIF) quadruple mutant pif1pif3pif4pif5 (pifq). The shaded light condition with a low ratio of red to far-red light inhibits stem SCW thickening. PIF4 interacts with MYC2 and MYC4 to affect their localization in nuclei, and this interaction results in inhibition of the MYCs' transactivation activity on the NST1 promoter. Genetic evidence shows that regulation of SCW thickening by PIFs is dependent on MYC2/MYC4 function. Together, the results of this study reveal a PHYB-PIF4-MYC2/MYC4 module that inhibits SCW thickening in fiber cells of the Arabidopsis stem.
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Affiliation(s)
- Fang Luo
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Qian Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China; University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Hu Xin
- Key Laboratory of Biodiversity Conservation in Southwest, State Forestry Administration, Southwest Forestry University, Kunming 650224, China
| | - Hongtao Liu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Hongquan Yang
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Monika S Doblin
- La Trobe Institute for Agriculture and Food, School of Agriculture, Biomedicine and Environment, Department of Animal, Plant and Soil Sciences, AgriBio, La Trobe University, Bundoora, VIC 3086, Australia; Sino-Australia Plant Cell Wall Research Centre, State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou 311300, China
| | - Antony Bacic
- La Trobe Institute for Agriculture and Food, School of Agriculture, Biomedicine and Environment, Department of Animal, Plant and Soil Sciences, AgriBio, La Trobe University, Bundoora, VIC 3086, Australia; Sino-Australia Plant Cell Wall Research Centre, State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou 311300, China
| | - Laigeng Li
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
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Du J, Ruan M, Li X, Lan Q, Zhang Q, Hao S, Gou X, Anderson CT, Xiao C. Pectin methyltransferase QUASIMODO2 functions in the formation of seed coat mucilage in Arabidopsis. JOURNAL OF PLANT PHYSIOLOGY 2022; 274:153709. [PMID: 35597109 DOI: 10.1016/j.jplph.2022.153709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 04/24/2022] [Accepted: 04/25/2022] [Indexed: 06/15/2023]
Abstract
Pectin, cellulose, and hemicelluloses are major components of primary cell walls in plants. In addition to cell adhesion and expansion, pectin plays a central role in seed mucilage. Seed mucilage contains abundant pectic rhamnogalacturonan-I (RG-I) and lower amounts of homogalacturonan (HG), cellulose, and hemicelluloses. Previously, accumulated evidence has addressed the role of pectin RG-I in mucilage production and adherence. However, less is known about the function of pectin HG in seed coat mucilage formation. In this study, we analyzed a novel mutant, designated things fall apart2 (tfa2), which contains a mutation in HG methyltransferase QUASIMODO2 (QUA2). Etiolated tfa2 seedlings display short hypocotyls and adhesion defects similar to qua2 and tumorous shoot development2 (tsd2) alleles, and show seed mucilage defects. The diminished uronic acid content and methylesterification degree of HG in mutant seed mucilage indicate the role of HG in the formation of seed mucilage. Cellulosic rays in mutant mucilage are collapsed. The epidermal cells of seed coat in tfa2 and tsd2 display deformed columellae and reduced radial wall thickness. Under polyethylene glycol treatment, seeds from these three mutant alleles exhibit reduced germination rates. Together, these data emphasize the requirement of pectic HG biosynthesis for the synthesis of seed mucilage, and the functions of different pectin domains together with cellulose in regulating its formation, expansion, and release.
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Affiliation(s)
- Juan Du
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Mei Ruan
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Xiaokun Li
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Qiuyan Lan
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Qing Zhang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Shuang Hao
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Xin Gou
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China
| | - Charles T Anderson
- Department of Biology, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Chaowen Xiao
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China.
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Du J, Anderson CT, Xiao C. Dynamics of pectic homogalacturonan in cellular morphogenesis and adhesion, wall integrity sensing and plant development. NATURE PLANTS 2022; 8:332-340. [PMID: 35411046 DOI: 10.1038/s41477-022-01120-2] [Citation(s) in RCA: 59] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 03/01/2022] [Indexed: 06/14/2023]
Abstract
Homogalacturonan (HG) is the most abundant pectin subtype in plant cell walls. Although it is a linear homopolymer, its modification states allow for complex molecular encoding. HG metabolism affects its structure, chemical properties, mobility and binding capacity, allowing it to interact dynamically with other polymers during wall assembly and remodelling and to facilitate anisotropic cell growth, cell adhesion and separation, and organ morphogenesis. HGs have also recently been found to function as signalling molecules that transmit information about wall integrity to the cell. Here we highlight recent advances in our understanding of the dual functions of HG as a dynamic structural component of the cell wall and an initiator of intrinsic and environmental signalling. We also predict how HG might interconnect the cell wall, plasma membrane and intracellular components with transcriptional networks to regulate plant growth and development.
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Affiliation(s)
- Juan Du
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China
| | - Charles T Anderson
- Department of Biology, Pennsylvania State University, University Park, PA, USA
| | - Chaowen Xiao
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China.
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Engle KA, Amos RA, Yang JY, Glushka J, Atmodjo M, Tan L, Huang C, Moremen KW, Mohnen D. Multiple Arabidopsis galacturonosyltransferases synthesize polymeric homogalacturonan by oligosaccharide acceptor-dependent or de novo synthesis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:1441-1456. [PMID: 34908202 PMCID: PMC8976717 DOI: 10.1111/tpj.15640] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Revised: 12/06/2021] [Accepted: 12/09/2021] [Indexed: 05/31/2023]
Abstract
Homogalacturonan (HG), the most abundant pectic glycan, functions as a cell wall structural and signaling molecule essential for plant growth, development and response to pathogens. HG exists as a component of pectic homoglycans, heteroglycans and glycoconjugates. HG is synthesized by members of the GALACTURONOSYLTRANSFERASE (GAUT) family. UDP-GalA-dependent homogalacturonan:galacturonosyltransferase (HG:GalAT) activity has previously been demonstrated for GAUTs 1, 4 and 11, as well as the GAUT1:GAUT7 complex. Here, we show that GAUTs 10, 13 and 14 are also HG:GalATs and that GAUTs 1, 10, 11, 13, 14 and 1:7 synthesize polymeric HG in vitro. Comparison of the in vitro HG:GalAT specific activities of the heterologously-expressed proteins demonstrates GAUTs 10 and 11 with the lowest, GAUT1 and GAUT13 with moderate, and GAUT14 and the GAUT1:GAUT7 complex with the highest HG:GalAT activity. GAUT13 and GAUT14 are also shown to de novo synthesize (initiate) HG synthesis in the absence of exogenous HG acceptors, an activity previously demonstrated for GAUT1:GAUT7. The rate of de novo HG synthesis by GAUT13 and GAUT14 is similar to their acceptor dependent HG synthesis, in contrast to GAUT1:GAUT7 for which de novo synthesis occurred at much lower rates than acceptor-dependent synthesis. The results suggest a unique role for de novo HG synthesis by GAUTs 13 and 14. The reducing end of GAUT13-de novo-synthesized HG has covalently attached UDP, indicating that UDP-GalA serves as both a donor and acceptor substrate during de novo HG synthesis. The functional significance of unique GAUT HG:GalAT catalytic properties in the synthesis of different pectin glycan or glycoconjugate structures is discussed.
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Affiliation(s)
- Kristen A. Engle
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Plant Biology, University of Georgia, Athens, Georgia 30602
| | - Robert A. Amos
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | - Jeong-Yeh Yang
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - John Glushka
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Melani Atmodjo
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | - Li Tan
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
| | - Chin Huang
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | - Kelley W. Moremen
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | - Debra Mohnen
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
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Biswal AK, Hengge NN, Black IM, Atmodjo MA, Mohanty SS, Ryno D, Himmel ME, Azadi P, Bomble YJ, Mohnen D. Composition and yield of non-cellulosic and cellulosic sugars in soluble and particulate fractions during consolidated bioprocessing of poplar biomass by Clostridium thermocellum. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2022; 15:23. [PMID: 35227303 PMCID: PMC8887089 DOI: 10.1186/s13068-022-02119-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Terrestrial plant biomass is the primary renewable carbon feedstock for enabling transition to a sustainable bioeconomy. Consolidated bioprocessing (CBP) by the cellulolytic thermophile Clostridium thermocellum offers a single step microbial platform for production of biofuels and biochemicals via simultaneous solubilization of carbohydrates from lignocellulosic biomass and conversion to products. Here, solubilization of cell wall cellulosic, hemicellulosic, and pectic polysaccharides in the liquor and solid residues generated during CBP of poplar biomass by C. thermocellum was analyzed. RESULTS The total amount of biomass solubilized in the C. thermocellum DSM1313 fermentation platform was 5.8, 10.3, and 13.7% of milled non-pretreated poplar after 24, 48, and 120 h, respectively. These results demonstrate solubilization of 24% cellulose and 17% non-cellulosic sugars after 120 h, consistent with prior reports. The net solubilization of non-cellulosic sugars by C. thermocellum (after correcting for the uninoculated control fermentations) was 13 to 36% of arabinose (Ara), xylose (Xyl), galactose (Gal), mannose (Man), and glucose (Glc); and 15% and 3% of fucose and glucuronic acid, respectively. No rhamnose was solubilized and 71% of the galacturonic acid (GalA) was solubilized. These results indicate that C. thermocellum may be selective for the types and/or rate of solubilization of the non-cellulosic wall polymers. Xyl, Man, and Glc were found to accumulate in the fermentation liquor at levels greater than in uninoculated control fermentations, whereas Ara and Gal did not accumulate, suggesting that C. thermocellum solubilizes both hemicelluloses and pectins but utilizes them differently. After five days of fermentation, the relative amount of Rha in the solid residues increased 21% indicating that the Rha-containing polymer rhamnogalacturonan I (RG-I) was not effectively solubilized by C. thermocellum CBP, a result confirmed by immunoassays. Comparison of the sugars in the liquor versus solid residue showed that C. thermocellum solubilized hemicellulosic xylan and mannan, but did not fully utilize them, solubilized and appeared to utilize pectic homogalacturonan, and did not solubilize RG-I. CONCLUSIONS The significant relative increase in RG-I in poplar solid residues following CBP indicates that C. thermocellum did not solubilize RG-I. These results support the hypothesis that this pectic glycan may be one barrier for efficient solubilization of poplar by C. thermocellum.
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Affiliation(s)
- Ajaya K. Biswal
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - Neal N. Hengge
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO 80401 USA
| | - Ian M. Black
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - Melani A. Atmodjo
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - Sushree S. Mohanty
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - David Ryno
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - Michael E. Himmel
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO 80401 USA
| | - Parastoo Azadi
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
| | - Yannick J. Bomble
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO 80401 USA
| | - Debra Mohnen
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602 USA
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9
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Li L, Garsamo M, Yuan J, Wang X, Lam SH, Varala K, Boavida LC, Zhou Y, Liu X. CAND1 is required for pollen viability in Arabidopsis thaliana-a test of the adaptive exchange hypothesis. FRONTIERS IN PLANT SCIENCE 2022; 13:866086. [PMID: 35968124 PMCID: PMC9366119 DOI: 10.3389/fpls.2022.866086] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Accepted: 07/04/2022] [Indexed: 05/11/2023]
Abstract
The dynamic assembly of SKP1•CUL1•F-box protein (SCF) ubiquitin ligases is important for protein ubiquitination and degradation. This process is enabled by CAND1, which exchanges F-box proteins associated with the common CUL1 scaffold, and thereby, recycles the limited CUL1 core and allows diverse F-box proteins to assemble active SCFs. Previous human cell biological and computational studies have led to the adaptive exchange hypothesis, which suggests that the CAND1-mediated exchange confers plasticity on the SCF system, allowing cells to tolerate large variations in F-box protein expression. Here, we tested this hypothesis using Arabidopsis thaliana, a multicellular organism expressing hundreds of F-box protein genes at variable levels in different tissues. The cand1 null mutant in Arabidopsis is viable but produce almost no seeds. Bioinformatic, cell biological, and developmental analyses revealed that the low fertility in the cand1 mutant is associated with cell death in pollen, where the net expression of F-box protein genes is significantly higher than any other Arabidopsis tissue. In addition, we show that the transmission efficiency of the cand1 null allele was reduced through the male but not the female gametophyte. Our results suggest that CAND1 activity is essential in cells or tissues expressing high levels of F-box proteins. This finding is consistent with the proposed adaptive exchange hypothesis, demonstrating the necessity of the evolutionarily conserved CAND1-mediated exchange system in the development of a multicellular organism.
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Affiliation(s)
- Lihong Li
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Melaku Garsamo
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Jing Yuan
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
| | - Xiaojin Wang
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States
| | - Susan H. Lam
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Kranthi Varala
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States
| | - Leonor C. Boavida
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
| | - Yun Zhou
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
| | - Xing Liu
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States
- Center for Plant Biology, Purdue University, West Lafayette, IN, United States
- *Correspondence: Xing Liu,
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10
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Guo H, Xiao C, Liu Q, Li R, Yan Z, Yao X, Hu H. Two galacturonosyltransferases function in plant growth, stomatal development, and dynamics. PLANT PHYSIOLOGY 2021; 187:2820-2836. [PMID: 34890462 PMCID: PMC8644590 DOI: 10.1093/plphys/kiab432] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 08/23/2021] [Indexed: 05/27/2023]
Abstract
The mechanical properties of guard cell (GC) walls are important for stomatal development and stomatal response to external stimuli. However, the molecular mechanisms of pectin synthesis and pectin composition controlling stomatal development and dynamics remain poorly explored. Here, we characterized the role of two Arabidopsis (Arabidopsis thaliana) galacturonosyltransferases, GAUT10 and GAUT11, in plant growth, stomatal development, and stomatal dynamics. GAUT10 and GAUT11 double mutations reduced pectin synthesis and promoted homogalacturonan (HG) demethylesterification and demethylesterified HG degradation, resulting in larger stomatal complexes and smaller pore areas, increased stomatal dynamics, and enhanced drought tolerance of plants. In contrast, increased GAUT10 or GAUT11 expression impaired stomatal dynamics and drought sensitivity. Genetic interaction analyses together with immunolabeling analyses suggest that the methylesterified HG level is important in stomatal dynamics, and pectin abundance with the demethylesterified HG level controls stomatal dimension and stomatal size. Our results provide insight into the molecular mechanism of GC wall properties in stomatal dynamics, and highlight the role of GAUT10 and GAUT11 in stomatal dimension and dynamics through modulation of pectin biosynthesis and distribution in GC walls.
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Affiliation(s)
- Huimin Guo
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Chuanlei Xiao
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Qing Liu
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Ruiying Li
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Zhiqiang Yan
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Xuan Yao
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Honghong Hu
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
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11
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Yadav V, Arif N, Singh VP, Guerriero G, Berni R, Shinde S, Raturi G, Deshmukh R, Sandalio LM, Chauhan DK, Tripathi DK. Histochemical Techniques in Plant Science: More Than Meets the Eye. PLANT & CELL PHYSIOLOGY 2021; 62:1509-1527. [PMID: 33594421 DOI: 10.1093/pcp/pcab022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 01/31/2021] [Indexed: 05/12/2023]
Abstract
Histochemistry is an essential analytical tool interfacing extensively with plant science. The literature is indeed constellated with examples showing its use to decipher specific physiological and developmental processes, as well as to study plant cell structures. Plant cell structures are translucent unless they are stained. Histochemistry allows the identification and localization, at the cellular level, of biomolecules and organelles in different types of cells and tissues, based on the use of specific staining reactions and imaging. Histochemical techniques are also widely used for the in vivo localization of promoters in specific tissues, as well as to identify specific cell wall components such as lignin and polysaccharides. Histochemistry also enables the study of plant reactions to environmental constraints, e.g. the production of reactive oxygen species (ROS) can be traced by applying histochemical staining techniques. The possibility of detecting ROS and localizing them at the cellular level is vital in establishing the mechanisms involved in the sensitivity and tolerance to different stress conditions in plants. This review comprehensively highlights the additional value of histochemistry as a complementary technique to high-throughput approaches for the study of the plant response to environmental constraints. Moreover, here we have provided an extensive survey of the available plant histochemical staining methods used for the localization of metals, minerals, secondary metabolites, cell wall components, and the detection of ROS production in plant cells. The use of recent technological advances like CRISPR/Cas9-based genome-editing for histological application is also addressed. This review also surveys the available literature data on histochemical techniques used to study the response of plants to abiotic stresses and to identify the effects at the tissue and cell levels.
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Affiliation(s)
- Vaishali Yadav
- D D Pant Interdisciplinary Research Laboratory, Department of Botany, University of Allahabad, Prayagraj 211002, India
| | - Namira Arif
- D D Pant Interdisciplinary Research Laboratory, Department of Botany, University of Allahabad, Prayagraj 211002, India
| | - Vijay Pratap Singh
- Plant Physiology Laboratory, Department of Botany, C.M.P. Degree College, A Constituent Post Graduate College of University of Allahabad, Prayagraj 211002, India
| | - Gea Guerriero
- Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, Hautcharage, Luxembourg
| | - Roberto Berni
- TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, Gembloux 5030, Belgium
| | - Suhas Shinde
- Department of Biology and Gus R. Douglass Institute, West Virginia State University, Institute, WV 25112, USA
| | - Gaurav Raturi
- Department of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Rupesh Deshmukh
- Department of Agri-Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Luisa M Sandalio
- Department of Biochemistry, Cellular and Molecular Biology of Plants, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, Granada 18008, Spain
| | - Devendra Kumar Chauhan
- D D Pant Interdisciplinary Research Laboratory, Department of Botany, University of Allahabad, Prayagraj 211002, India
| | - Durgesh Kumar Tripathi
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, I 2 Block, 5th Floor, AUUP Campus Sector-125, Noida 201313, India
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12
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Marciniak K, Przedniczek K. Anther dehiscence is regulated by gibberellic acid in yellow lupine (Lupinus luteus L.). BMC PLANT BIOLOGY 2021; 21:314. [PMID: 34215194 PMCID: PMC8252261 DOI: 10.1186/s12870-021-03085-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 06/04/2021] [Indexed: 05/28/2023]
Abstract
BACKGROUND Anther dehiscence resulting in the release of pollen grains is tightly regulated in a spatiotemporal manner by various factors. In yellow lupine (Lupinus luteus L.), a species that shows cleistogamy, the anthers split before the flowers open, but the course and regulation of this process are unknown. The specific control of anther development takes place via hormonal pathways, the wide action of which ensures reproductive success. In our previous research concerning flower and early pod development in yellow lupine, we showed that the lowest transcript level of LlDELLA1, a main repressor of gibberellin (GA) signalling, occurs approximately at the time of anther opening; therefore, the main purpose of this study was to precisely investigate the gibberellic acid (GA3)-dependent regulation of the anther dehiscence in this species. RESULTS In this paper, we showed the specific changes in the yellow lupine anther structure during dehiscence, including secondary thickening in the endothecium by lignocellulosic deposition, enzymatic cell wall breakdown at the septum/stomium and cell degeneration via programmed cell death (PCD), and identified several genes widely associated with this process. The expression profile of genes varied over time, with the most intense mRNA accumulation in the phases prior to or at the time of anther opening. The transcriptional activity also revealed that these genes are highly coexpressed and regulated in a GA-dependent manner. The cellular and tissue localization of GA3 showed that these molecules are present before anther opening, mainly in septum cells, near the vascular bundle and in the endothecium, and that they are subsequently undetectable. GA3 localization strongly correlates with the transcriptional activity of genes related to GA biosynthesis and deactivation. The results also suggest that GA3 controls LlGAMYB expression via an LlMIR159-dependent pathway. CONCLUSIONS The presented results show a clear contribution of GA3 in the control of the extensive anther dehiscence process in yellow lupine. Understanding the processes underlying pollen release at the hormonal and molecular levels is a significant aspect of controlling fertility in this economically important legume crop species and is of increasing interest to breeders.
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Affiliation(s)
- Katarzyna Marciniak
- Faculty of Biological and Veterinary Sciences, Department of Plant Physiology and Biotechnology, Nicolaus Copernicus University, Lwowska 1 St, 87-100, Toruń, Poland.
| | - Krzysztof Przedniczek
- Faculty of Biological and Veterinary Sciences, Department of Plant Physiology and Biotechnology, Nicolaus Copernicus University, Lwowska 1 St, 87-100, Toruń, Poland
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Hao Z, Yogiswara S, Wei T, Benites VT, Sinha A, Wang G, Baidoo EEK, Ronald PC, Scheller HV, Loqué D, Eudes A. Expression of a bacterial 3-dehydroshikimate dehydratase (QsuB) reduces lignin and improves biomass saccharification efficiency in switchgrass (Panicum virgatum L.). BMC PLANT BIOLOGY 2021; 21:56. [PMID: 33478381 PMCID: PMC7819203 DOI: 10.1186/s12870-021-02842-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 01/13/2021] [Indexed: 05/11/2023]
Abstract
BACKGROUND Lignin deposited in plant cell walls negatively affects biomass conversion into advanced bioproducts. There is therefore a strong interest in developing bioenergy crops with reduced lignin content or altered lignin structures. Another desired trait for bioenergy crops is the ability to accumulate novel bioproducts, which would enhance the development of economically sustainable biorefineries. As previously demonstrated in the model plant Arabidopsis, expression of a 3-dehydroshikimate dehydratase in plants offers the potential for decreasing lignin content and overproducing a value-added metabolic coproduct (i.e., protocatechuate) suitable for biological upgrading. RESULTS The 3-dehydroshikimate dehydratase QsuB from Corynebacterium glutamicum was expressed in the bioenergy crop switchgrass (Panicum virgatum L.) using the stem-specific promoter of an O-methyltransferase gene (pShOMT) from sugarcane. The activity of pShOMT was validated in switchgrass after observation in-situ of beta-glucuronidase (GUS) activity in stem nodes of plants carrying a pShOMT::GUS fusion construct. Under controlled growth conditions, engineered switchgrass lines containing a pShOMT::QsuB construct showed reductions of lignin content, improvements of biomass saccharification efficiency, and accumulated higher amount of protocatechuate compared to control plants. Attempts to generate transgenic switchgrass lines carrying the QsuB gene under the control of the constitutive promoter pZmUbi-1 were unsuccessful, suggesting possible toxicity issues associated with ectopic QsuB expression during the plant regeneration process. CONCLUSION This study validates the transfer of the QsuB engineering approach from a model plant to switchgrass. We have demonstrated altered expression of two important traits: lignin content and accumulation of a co-product. We found that the choice of promoter to drive QsuB expression should be carefully considered when deploying this strategy to other bioenergy crops. Field-testing of engineered QsuB switchgrass are in progress to assess the performance of the introduced traits and agronomic performances of the transgenic plants.
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Affiliation(s)
- Zhangying Hao
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Sasha Yogiswara
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Tong Wei
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
- Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616 USA
- Present address: State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, 518000 China
| | - Veronica Teixeira Benites
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Anagh Sinha
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - George Wang
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Edward E. K. Baidoo
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Pamela C. Ronald
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
- Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616 USA
| | - Henrik V. Scheller
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
- Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA 94720 USA
| | - Dominique Loqué
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Aymerick Eudes
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
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14
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Rahmati Ishka M, Vatamaniuk OK. Copper deficiency alters shoot architecture and reduces fertility of both gynoecium and androecium in Arabidopsis thaliana. PLANT DIRECT 2020; 4:e00288. [PMID: 33283140 PMCID: PMC7700745 DOI: 10.1002/pld3.288] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Revised: 10/21/2020] [Accepted: 10/25/2020] [Indexed: 05/05/2023]
Abstract
Copper deficiency reduces plant growth, male fertility, and seed set. The contribution of copper to female fertility and the underlying molecular aspects of copper deficiency-caused phenotypes are not well known. We show that among copper deficiency-caused defects in Arabidopsis thaliana were also the increased shoot branching, delayed flowering and senescence, and entirely abolished gynoecium fertility. The increased shoot branching of copper-deficient plants was rescued by the exogenous application of auxin or copper. The delayed flowering was associated with the decreased expression of the floral activator, FT. Copper deficiency also decreased the expression of senescence-associated genes, WRKY53 and SAG13, but increased the expression of SAG12. The reduced fertility of copper-deficient plants stemmed from multiple factors including the abnormal stigma papillae development, the abolished gynoecium fertility, and the failure of anthers to dehisce. The latter defect was associated with reduced lignification, the upregulation of copper microRNAs and the downregulation of their targets, laccases, implicated in lignin synthesis. Copper-deficient plants accumulated ROS in pollen and had reduced cytochrome c oxidase activity in both leaves and floral buds. This study opens new avenues for the investigation into the relationship between copper homeostasis, hormone-mediated shoot architecture, gynoecium fertility, and copper deficiency-derived nutritional signals leading to the delay in flowering and senescence.
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Affiliation(s)
- Maryam Rahmati Ishka
- Soil and Crop Sciences SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
| | - Olena K. Vatamaniuk
- Soil and Crop Sciences SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
- Plant Biology SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
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15
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Sun A, Yu B, Zhang Q, Peng Y, Yang J, Sun Y, Qin P, Jia T, Smeekens S, Teng S. MYC2-Activated TRICHOME BIREFRINGENCE-LIKE37 Acetylates Cell Walls and Enhances Herbivore Resistance. PLANT PHYSIOLOGY 2020; 184:1083-1096. [PMID: 32732351 PMCID: PMC7536677 DOI: 10.1104/pp.20.00683] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 07/20/2020] [Indexed: 05/08/2023]
Abstract
O-Acetylation of polysaccharides predominantly modifies plant cell walls by changing the physicochemical properties and, consequently, the structure and function of the cell wall. Expression regulation and specific function of cell wall-acetylating enzymes remain to be fully understood. In this report, we cloned a previously identified stunted growth mutant named sucrose uncoupled1 (sun1) in Arabidopsis (Arabidopsis thaliana). SUN1 encodes a member of the TRICHOME BIREFRINGEN-LIKE family, AtTBL37 AtTBL37 is highly expressed in fast-growing plant tissues and encodes a Golgi apparatus-localized protein that regulates secondary cell wall thickening and acetylation. In sun1, jasmonate signaling and expression of downstream chemical defense genes, including VEGETATIVE STORAGE PROTEIN1 and BRANCHED-CHAIN AMINOTRANSFERASE4, are increased but, unexpectedly, sun1 is more susceptible to insect feeding. The central transcription factor in jasmonate signaling, MYC2, binds to and induces AtTBL37 expression. MYC2 also promotes the expression of many other TBLs Moreover, MYC activity enhances cell wall acetylation. Overexpression of AtTBL37 in the myc2-2 background reduces herbivore feeding. Our study highlights the role of O-acetylation in controlling plant cell wall properties, plant development, and herbivore defense.
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Affiliation(s)
- Aiqing Sun
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Bo Yu
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Qian Zhang
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Peng
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Jing Yang
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yonghua Sun
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Ping Qin
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Tao Jia
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Sjef Smeekens
- Molecular Plant Physiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Sheng Teng
- Laboratory of Photosynthesis and Environmental Biology, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
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16
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Moon S, Jung KH. First Steps in the Successful Fertilization of Rice and Arabidopsis: Pollen Longevity, Adhesion and Hydration. PLANTS (BASEL, SWITZERLAND) 2020; 9:E956. [PMID: 32751098 PMCID: PMC7465243 DOI: 10.3390/plants9080956] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Revised: 07/21/2020] [Accepted: 07/21/2020] [Indexed: 02/04/2023]
Abstract
Understanding the behavior of pollen during pollination is important for food security in the future. The elucidation of pollen development and growth regulation largely relies on the study of the dicotyledonous model plant Arabidopsis thaliana. However, rice (Oryza sativa) pollen exhibits different characteristics to that of Arabidopsis. The latter undergoes programmed dehydration and withstands adverse environmental conditions, whereas rice pollen is sensitive to desiccation. Moreover, the short longevity of rice pollen significantly hampers hybrid seed production. Although the "omics" data for mature rice pollen have been accumulated, few genes that control pollination and pollen hydration have been identified. Therefore, to facilitate future studies, it is necessary to summarize the developmental processes involved in pollen production in rice and to consolidate the underlying mechanisms discovered in previous studies. In this review, we describe the pollen developmental processes and introduce gametophytic mutants, which form defective pollen in Arabidopsis and rice. In addition, we discuss the perspectives on the research on pollen longevity, adhesion and hydration.
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Affiliation(s)
| | - Ki-Hong Jung
- Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Korea;
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17
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Moneo-Sánchez M, Vaquero-Rodríguez A, Hernández-Nistal J, Albornos L, Knox P, Dopico B, Labrador E, Martín I. Pectic galactan affects cell wall architecture during secondary cell wall deposition. PLANTA 2020; 251:100. [PMID: 32328732 DOI: 10.1007/s00425-020-03394-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 04/16/2020] [Indexed: 05/02/2023]
Abstract
β-(1,4)-galactan determines the interactions between different matrix polysaccharides and cellulose during the cessation of cell elongation. Despite recent advances regarding the role of pectic β-(1,4)-galactan neutral side chains in primary cell wall remodelling during growth and cell elongation, little is known about the specific function of this polymer in other developmental processes. We have used transgenic Arabidopsis plants overproducing chickpea βI-Gal β-galactosidase under the 35S CaMV promoter (35S::βI-Gal) with reduced galactan levels in the basal non-elongating floral stem internodes to gain insight into the role of β-(1,4)-galactan in cell wall architecture during the cessation of elongation and the beginning of secondary growth. The loss of galactan mediated by βI-Gal in 35S::βI-Gal plants is accompanied by a reduction in the levels of KOH-extracted xyloglucan and an increase in the levels of xyloglucan released by a cellulose-specific endoglucanase. These variations in cellulose-xyloglucan interactions cause an altered xylan and mannan deposition in the cell wall that in turn results in a deficient lignin deposition. Considering these results, we can state that β-(1,4)-galactan plays a key structural role in the correct organization of the different domains of the cell wall during the cessation of growth and the early events of secondary cell wall development. These findings reinforce the notion that there is a mutual dependence between the different polysaccharides and lignin polymers to form an organized and functional cell wall.
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Affiliation(s)
- María Moneo-Sánchez
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain
| | - Andrea Vaquero-Rodríguez
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain
| | | | - Lucía Albornos
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain
| | - Paul Knox
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Berta Dopico
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain
| | - Emilia Labrador
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain
| | - Ignacio Martín
- Departamento de Botánica y Fisiología Vegetal, Centro Hispano Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, 37007, Salamanca, Spain.
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18
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ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content. Proc Natl Acad Sci U S A 2020; 117:3281-3290. [PMID: 31974310 PMCID: PMC7022211 DOI: 10.1073/pnas.1914422117] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
There is considerable interest in engineering plant cell wall components, particularly lignin, to improve forage quality and biomass properties for processing to fuels and bioproducts. However, modifying lignin content and/or composition in transgenic plants through down-regulation of lignin biosynthetic enzymes can induce expression of defense response genes in the absence of biotic or abiotic stress. Arabidopsis thaliana lines with altered lignin through down-regulation of hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase (HCT) or loss of function of cinnamoyl CoA reductase 1 (CCR1) express a suite of pathogenesis-related (PR) protein genes. The plants also exhibit extensive cell wall remodeling associated with induction of multiple cell wall-degrading enzymes, a process which renders the corresponding biomass a substrate for growth of the cellulolytic thermophile Caldicellulosiruptor bescii lacking a functional pectinase gene cluster. The cell wall remodeling also results in the release of size- and charge-heterogeneous pectic oligosaccharide elicitors of PR gene expression. Genetic analysis shows that both in planta PR gene expression and release of elicitors are the result of ectopic expression in xylem of the gene ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1), which is normally expressed during anther and silique dehiscence. These data highlight the importance of pectin in cell wall integrity and the value of lignin modification as a tool to interrogate the informational content of plant cell walls.
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19
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Cell wall polysaccharides degradation and ultrastructure modification of apricot during storage at a near freezing temperature. Food Chem 2019; 300:125194. [DOI: 10.1016/j.foodchem.2019.125194] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Revised: 07/14/2019] [Accepted: 07/15/2019] [Indexed: 11/20/2022]
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20
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Zhao SQ, Li WC, Zhang Y, Tidy AC, Wilson ZA. Knockdown of Arabidopsis ROOT UVB SENSITIVE4 Disrupts Anther Dehiscence by Suppressing Secondary Thickening in the Endothecium. PLANT & CELL PHYSIOLOGY 2019; 60:2293-2306. [PMID: 31268148 DOI: 10.1093/pcp/pcz127] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Accepted: 06/20/2019] [Indexed: 06/09/2023]
Abstract
ROOT UV-B SENSITIVE4 (RUS4) encodes a protein with no known function that contains a conserved Domain of Unknown Function 647 (DUF647). The DUF647-containing proteins RUS1 and RUS2 have previously been associated with root UV-B-sensing pathway that plays a major role in Arabidopsis early seedling morphogenesis and development. Here, we show that RUS4 knockdown Arabidopsis plants, referred to as amiR-RUS4, were severely reduced in male fertility with indehiscent anthers. Light microscopy of anther sections revealed a significantly reduced secondary wall thickening in the endothecium of amiR-RUS4 anthers. We further show that the transcript abundance of the NAC domain genes NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 (NST1) and NST2, which have been shown to regulate the secondary cell wall thickenings in the anther endothecium, were dramatically reduced in the amiR-RUS4 floral buds. Expression of the secondary cell wall-associated MYB transcription factor genes MYB103 and MYB85 were also strongly reduced in floral buds of the amiR-RUS4 plants. Overexpression of RUS4 led to increased secondary thickening in the endothecium. However, the rus4-2 mutant exhibited no obvious phenotype. Promoter-GUS analysis revealed that the RUS4 promoter was highly active in the anthers, supporting its role in anther development. Taken together, these results suggest that RUS4, probably functions redundantly with other genes, may play an important role in the secondary thickening formation in the anther endothecium by indirectly affecting the expression of secondary cell wall biosynthetic genes.
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Affiliation(s)
- Shu-Qing Zhao
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, China
| | - Wen-Chao Li
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, China
| | - Yi Zhang
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan, China
| | - Alison C Tidy
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, UK
| | - Zoe A Wilson
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, UK
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Zhang Y, Yin B, Zhang J, Cheng Z, Liu Y, Wang B, Guo X, Liu X, Liu D, Li H, Lu H. Histone Deacetylase HDT1 is Involved in Stem Vascular Development in Arabidopsis. Int J Mol Sci 2019; 20:E3452. [PMID: 31337083 PMCID: PMC6678272 DOI: 10.3390/ijms20143452] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 06/28/2019] [Accepted: 07/11/2019] [Indexed: 11/30/2022] Open
Abstract
Histone acetylation and deacetylation play essential roles in eukaryotic gene regulation. HD2 (HD-tuins) proteins were previously identified as plant-specific histone deacetylases. In this study, we investigated the function of the HDT1 gene in the formation of stem vascular tissue in Arabidopsis thaliana. The height and thickness of the inflorescence stems in the hdt1 mutant was lower than that of wild-type plants. Paraffin sections showed that the cell number increased compared to the wild type, while transmission electron microscopy showed that the size of individual tracheary elements and fiber cells significantly decreased in the hdt1 mutant. In addition, the cell wall thickness of tracheary elements and fiber cells increased. We also found that the lignin content in the stem of the hdt1 mutants increased compared to that of the wild type. Transcriptomic data revealed that the expression levels of many biosynthetic genes related to secondary wall components, including cellulose, lignin biosynthesis, and hormone-related genes, were altered, which may lead to the altered phenotype in vascular tissue of the hdt1 mutant. These results suggested that HDT1 is involved in development of the vascular tissue of the stem by affecting cell proliferation and differentiation.
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Affiliation(s)
- Yongzhuo Zhang
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Bin Yin
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Jiaxue Zhang
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Ziyi Cheng
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Yadi Liu
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Bing Wang
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Xiaorui Guo
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Xiatong Liu
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Di Liu
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Hui Li
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China.
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
| | - Hai Lu
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China
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22
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Jacobowitz JR, Doyle WC, Weng JK. PRX9 and PRX40 Are Extensin Peroxidases Essential for Maintaining Tapetum and Microspore Cell Wall Integrity during Arabidopsis Anther Development. THE PLANT CELL 2019; 31:848-861. [PMID: 30886127 PMCID: PMC6501601 DOI: 10.1105/tpc.18.00907] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Revised: 02/06/2019] [Accepted: 03/13/2019] [Indexed: 05/22/2023]
Abstract
Pollen and microspore development are essential steps in the life cycle of all land plants that generate male gametes. Within flowering plants, pollen development occurs inside of the anther. Here, we report the identification of two class III peroxidase-encoding genes, PEROXIDASE9 (PRX9) and PRX40, that are genetically redundant and essential for proper anther and pollen development in Arabidopsis (Arabidopsis thaliana). Arabidopsis double mutants devoid of functional PRX9 and PRX40 are male sterile. The mutant anthers display swollen, hypertrophic tapetal cells and pollen grains, suggesting disrupted cell wall integrity. These phenotypes lead to nearly 100%-penetrant pollen degeneration upon anther maturation. Using immunochemical and biochemical approaches, we show that PRX9 and PRX40 likely cross-link extensins to contribute to tapetal cell wall integrity during anther development. This work suggests that PRX9 and PRX40 encode Arabidopsis extensin peroxidases and highlights the importance of extensin cross-linking during pollen development.
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Affiliation(s)
- Joseph R Jacobowitz
- Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142
- Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139
| | - William C Doyle
- Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142
| | - Jing-Ke Weng
- Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142
- Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139
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23
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Wierzbicki MP, Maloney V, Mizrachi E, Myburg AA. Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing. FRONTIERS IN PLANT SCIENCE 2019; 10:176. [PMID: 30858858 PMCID: PMC6397879 DOI: 10.3389/fpls.2019.00176] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2018] [Accepted: 02/04/2019] [Indexed: 05/14/2023]
Abstract
Lignocellulosic biomass, encompassing cellulose, lignin and hemicellulose in plant secondary cell walls (SCWs), is the most abundant source of renewable materials on earth. Currently, fast-growing woody dicots such as Eucalyptus and Populus trees are major lignocellulosic (wood fiber) feedstocks for bioproducts such as pulp, paper, cellulose, textiles, bioplastics and other biomaterials. Processing wood for these products entails separating the biomass into its three main components as efficiently as possible without compromising yield. Glucuronoxylan (xylan), the main hemicellulose present in the SCWs of hardwood trees carries chemical modifications that are associated with SCW composition and ultrastructure, and affect the recalcitrance of woody biomass to industrial processing. In this review we highlight the importance of xylan properties for industrial wood fiber processing and how gaining a greater understanding of xylan biosynthesis, specifically xylan modification, could yield novel biotechnology approaches to reduce recalcitrance or introduce novel processing traits. Altering xylan modification patterns has recently become a focus of plant SCW studies due to early findings that altered modification patterns can yield beneficial biomass processing traits. Additionally, it has been noted that plants with altered xylan composition display metabolic differences linked to changes in precursor usage. We explore the possibility of using systems biology and systems genetics approaches to gain insight into the coordination of SCW formation with other interdependent biological processes. Acetyl-CoA, s-adenosylmethionine and nucleotide sugars are precursors needed for xylan modification, however, the pathways which produce metabolic pools during different stages of fiber cell wall formation still have to be identified and their co-regulation during SCW formation elucidated. The crucial dependence on precursor metabolism provides an opportunity to alter xylan modification patterns through metabolic engineering of one or more of these interdependent pathways. The complexity of xylan biosynthesis and modification is currently a stumbling point, but it may provide new avenues for woody biomass engineering that are not possible for other biopolymers.
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Affiliation(s)
| | | | | | - Alexander A. Myburg
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
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24
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Lignin polymerization: how do plants manage the chemistry so well? Curr Opin Biotechnol 2018; 56:75-81. [PMID: 30359808 DOI: 10.1016/j.copbio.2018.10.001] [Citation(s) in RCA: 128] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 09/05/2018] [Accepted: 10/03/2018] [Indexed: 11/22/2022]
Abstract
The final step of lignin biosynthesis is the polymerization of monolignols in apoplastic cell wall domains. In this process, monolignols secreted by lignifying cells, or occasionally neighboring non-lignifying and/or other lignifying cells, are activated by cell-wall-localized oxidation systems, such as laccase/O2 and/or peroxidase/H2O2, for combinatorial radical coupling to make the final lignin polymers. Plants can precisely control when, where, and which types of lignin polymers are assembled at tissue and cellular levels, but do not control the polymers' exact chemical structures per se. Recent studies have begun to identify specific laccase and peroxidase proteins responsible for lignin polymerization in specific cell types and during different developmental stages. The coordination of polymerization machinery localization and monolignol supply is likely critical for the spatio-temporal patterning of lignin polymerization. Further advancement in this research area will continue to increase our capacity to manipulate lignin content/structure in biomass to meet our own biotechnological purposes.
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25
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Zhang Q, Xie Z, Zhang R, Xu P, Liu H, Yang H, Doblin MS, Bacic A, Li L. Blue Light Regulates Secondary Cell Wall Thickening via MYC2/MYC4 Activation of the NST1-Directed Transcriptional Network in Arabidopsis. THE PLANT CELL 2018; 30:2512-2528. [PMID: 30242037 PMCID: PMC6241271 DOI: 10.1105/tpc.18.00315] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Revised: 09/05/2018] [Accepted: 09/16/2018] [Indexed: 05/18/2023]
Abstract
Secondary cell walls (SCWs) are formed in some specific types of plant cells, providing plants with mechanical strength. During plant growth and development, formation of secondary cell walls is regulated by various developmental and environmental signals. The underlying molecular mechanisms are poorly understood. In this study, we analyzed the blue light receptor cryptochrome1 (cry1) mutant of Arabidopsis thaliana for its SCW phenotypes. During inflorescence stem growth, SCW thickening in the vasculature was significantly affected by blue light. cry1 plants displayed a decline of SCW thickening in fiber cells, while CRY1 overexpression led to enhanced SCW formation. Transcriptome analysis indicated that the reduced SCW thickening was associated with repression of the NST1-directed transcription regulatory networks. Further analyses revealed that the expression of MYC2/MYC4 that is induced by blue light activates the transcriptional network underlying SCW thickening. The activation is caused by direct binding of MYC2/MYC4 to the NST1 promoter. This study demonstrates that SCW thickening in fiber cells is regulated by a blue light signal that is mediated through MYC2/MYC4 activation of NST1-directed SCW formation in Arabidopsis.
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Affiliation(s)
- Qian Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Zhi Xie
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Rui Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Peng Xu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Hongtao Liu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Hongquan Yang
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Monika S Doblin
- ARC Centre of Excellence in Plant Cell Walls and La Trobe Institute for Agriculture and Food, School of Life Sciences, Department of Animal, Plant, and Soil Sciences, AgriBio, La Trobe University, Bundoora VIC 3086, Australia
| | - Antony Bacic
- ARC Centre of Excellence in Plant Cell Walls and La Trobe Institute for Agriculture and Food, School of Life Sciences, Department of Animal, Plant, and Soil Sciences, AgriBio, La Trobe University, Bundoora VIC 3086, Australia
| | - Laigeng Li
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
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26
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Zhao X, Liu N, Shang N, Zeng W, Ebert B, Rautengarten C, Zeng QY, Li H, Chen X, Beahan C, Bacic A, Heazlewood JL, Wu AM. Three UDP-xylose transporters participate in xylan biosynthesis by conveying cytosolic UDP-xylose into the Golgi lumen in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:1125-1134. [PMID: 29300997 PMCID: PMC6018967 DOI: 10.1093/jxb/erx448] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2017] [Accepted: 11/26/2017] [Indexed: 05/20/2023]
Abstract
UDP-xylose (UDP-Xyl) is synthesized by UDP-glucuronic acid decarboxylases, also termed UDP-Xyl synthases (UXSs). The Arabidopsis genome encodes six UXSs, which fall into two groups based upon their subcellular location: the Golgi lumen and the cytosol. The latter group appears to play an important role in xylan biosynthesis. Cytosolic UDP-Xyl is transported into the Golgi lumen by three UDP-Xyl transporters (UXT1, 2, and 3). However, while single mutants affected in the UDP-Xyl transporter 1 (UXT1) showed a substantial reduction in cell wall xylose content, a double mutant affected in UXT2 and UXT3 had no obvious effect on cell wall xylose deposition. This prompted us to further investigate redundancy among the members of the UXT family. Multiple uxt mutants were generated, including a triple mutant, which exhibited collapsed vessels and reduced cell wall thickness in interfascicular fiber cells. Monosaccharide composition, molecular weight, nuclear magnetic resonance, and immunolabeling studies demonstrated that both xylan biosynthesis (content) and fine structure were significantly affected in the uxt triple mutant, leading to phenotypes resembling those of the irx mutants. Pollination was also impaired in the uxt triple mutant, likely due to reduced filament growth and anther dehiscence caused by alterations in the composition of the cell walls. Moreover, analysis of the nucleotide sugar composition of the uxt mutants indicated that nucleotide sugar interconversion is influenced by the cytosolic UDP-Xyl pool within the cell. Taken together, our results underpin the physiological roles of the UXT family in xylan biosynthesis and provide novel insights into the nucleotide sugar metabolism and trafficking in plants.
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Affiliation(s)
- Xianhai Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Nian Liu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Na Shang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Wei Zeng
- ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, University of Melbourne, Parkville, VIC, Australia
| | - Berit Ebert
- School of BioSciences, University of Melbourne, Parkville, VIC, Australia
| | | | - Qing-Yin Zeng
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
| | - Huiling Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Xiaoyang Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Cherie Beahan
- ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, University of Melbourne, Parkville, VIC, Australia
| | - Antony Bacic
- ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, University of Melbourne, Parkville, VIC, Australia
| | - Joshua L Heazlewood
- School of BioSciences, University of Melbourne, Parkville, VIC, Australia
- Correspondence: ;
| | - Ai-Min Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Correspondence: ;
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27
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Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis. Nat Biotechnol 2018; 36:249-257. [DOI: 10.1038/nbt.4067] [Citation(s) in RCA: 104] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 01/02/2018] [Indexed: 01/17/2023]
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28
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Behr M, Sergeant K, Leclercq CC, Planchon S, Guignard C, Lenouvel A, Renaut J, Hausman JF, Lutts S, Guerriero G. Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl. BMC PLANT BIOLOGY 2018; 18:1. [PMID: 29291729 PMCID: PMC5749015 DOI: 10.1186/s12870-017-1213-1] [Citation(s) in RCA: 106] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 12/12/2017] [Indexed: 05/18/2023]
Abstract
BACKGROUND Lignin and lignans are both derived from the monolignol pathway. Despite the similarity of their building blocks, they fulfil different functions in planta. Lignin strengthens the tissues of the plant, while lignans are involved in plant defence and growth regulation. Their biosyntheses are tuned both spatially and temporally to suit the development of the plant (water conduction, reaction to stresses). We propose to study the general molecular events related to monolignol-derived product biosynthesis, especially lignin. It was previously shown that the growing hemp hypocotyl (between 6 and 20 days after sowing) is a valid system to study secondary growth and the molecular events accompanying lignification. The present work confirms the validity of this system, by using it to study the regulation of lignin and lignan biosynthesis. Microscopic observations, lignin analysis, proteomics, together with in situ laccase and peroxidase activity assays were carried out to understand the dynamics of lignin synthesis during the development of the hemp hypocotyl. RESULTS Based on phylogenetic analysis and targeted gene expression, we suggest a role for the hemp dirigent and dirigent-like proteins in lignan biosynthesis. The transdisciplinary approach adopted resulted in the gene- and protein-level quantification of the main enzymes involved in the biosynthesis of monolignols and their oxidative coupling (laccases and class III peroxidases), in lignin deposition (dirigent-like proteins) and in the determination of the stereoconformation of lignans (dirigent proteins). CONCLUSIONS Our work sheds light on how, in the growing hemp hypocotyl, the provision of the precursors needed to synthesize the aromatic biomolecules lignin and lignans is regulated at the transcriptional and proteomic level.
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Affiliation(s)
- Marc Behr
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université catholique de Louvain (UcL), 1348 Louvain-la-Neuve, Belgium
| | - Kjell Sergeant
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Céline C. Leclercq
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Sébastien Planchon
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Cédric Guignard
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Audrey Lenouvel
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Jenny Renaut
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Jean-Francois Hausman
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
| | - Stanley Lutts
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université catholique de Louvain (UcL), 1348 Louvain-la-Neuve, Belgium
| | - Gea Guerriero
- Environmental Research and Innovation Department (ERIN), Luxembourg Institute of Science and Technology (LIST), L-4362 Esch/Alzette, Luxembourg
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29
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Biswal AK, Atmodjo MA, Pattathil S, Amos RA, Yang X, Winkeler K, Collins C, Mohanty SS, Ryno D, Tan L, Gelineo-Albersheim I, Hunt K, Sykes RW, Turner GB, Ziebell A, Davis MF, Decker SR, Hahn MG, Mohnen D. Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 ( GAUT12) causes increased recalcitrance and decreased growth in Populus. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:9. [PMID: 29371885 PMCID: PMC5771077 DOI: 10.1186/s13068-017-1002-y] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Accepted: 12/18/2017] [Indexed: 05/03/2023]
Abstract
BACKGROUND The development of fast-growing hardwood trees as a source of lignocellulosic biomass for biofuel and biomaterial production requires a thorough understanding of the plant cell wall structure and function that underlie the inherent recalcitrance properties of woody biomass. Downregulation of GAUT12.1 in Populus deltoides was recently reported to result in improved biomass saccharification, plant growth, and biomass yield. To further understand GAUT12.1 function in biomass recalcitrance and plant growth, here we report the effects of P. trichocarpa GAUT12.1 overexpression in P. deltoides. RESULTS Increasing GAUT12.1 transcript expression by 7-49% in P. deltoides PtGAUT12.1-overexpression (OE) lines resulted in a nearly complete opposite biomass saccharification and plant growth phenotype to that observed previously in PdGAUT12.1-knockdown (KD) lines. This included significantly reduced glucose, xylose, and total sugar release (12-13%), plant height (6-54%), stem diameter (8-40%), and overall total aerial biomass yield (48-61%) in 3-month-old, greenhouse-grown PtGAUT12.1-OE lines compared to controls. Total lignin content was unaffected by the gene overexpression. Importantly, selected PtGAUT12.1-OE lines retained the recalcitrance and growth phenotypes upon growth for 9 months in the greenhouse and 2.8 years in the field. PtGAUT12.1-OE plants had significantly smaller leaves with lower relative water content, and significantly reduced stem wood xylem cell numbers and size. At the cell wall level, xylose and galacturonic acid contents increased markedly in total cell walls as well as in soluble and insoluble cell wall extracts, consistent with increased amounts of xylan and homogalacturonan in the PtGAUT12.1-OE lines. This led to increased cell wall recalcitrance, as manifested by the 9-15% reduced amounts of recovered extractable wall materials and 8-15% greater amounts of final insoluble pellet in the PtGAUT12.1-OE lines compared to controls. CONCLUSIONS The combined phenotype and chemotype data from P. deltoides PtGAUT12.1-OE and PdGAUT12.1-KD transgenics clearly establish GAUT12.1 as a recalcitrance- and growth-associated gene in poplar. Overall, the data support the hypothesis that GAUT12.1 synthesizes either an HG-containing primer for xylan synthesis or an HG glycan required for proper xylan deposition, anchoring, and/or architecture in the wall, and the possibility of HG and xylan glycans being connected to each other by a base-sensitive covalent linkage.
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Affiliation(s)
- Ajaya K. Biswal
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Melani A. Atmodjo
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Sivakumar Pattathil
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- Present Address: Mascoma LLC (Lallemand Inc.), 67 Etna Rd., Lebanon, NH 03766 USA
| | - Robert A. Amos
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Xiaohan Yang
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Kim Winkeler
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- ArborGen, Inc., 2011 Broadbank Ct., Ridgeville, SC 29472 USA
| | - Cassandra Collins
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- ArborGen, Inc., 2011 Broadbank Ct., Ridgeville, SC 29472 USA
| | - Sushree S. Mohanty
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - David Ryno
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Li Tan
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Ivana Gelineo-Albersheim
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Kimberly Hunt
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- Present Address: South Georgia State College, 100 West College Park Dr., Douglas, GA 31533 USA
| | - Robert W. Sykes
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- National Renewable Energy Laboratory, Golden, CO 80401-3305 USA
- Present Address: Nuclear Materials Science, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545-1663 USA
| | - Geoffrey B. Turner
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- National Renewable Energy Laboratory, Golden, CO 80401-3305 USA
- Present Address: Nu Mark LLC, 6601 W. Broad St., Richmond, VA 23230 USA
| | - Angela Ziebell
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- National Renewable Energy Laboratory, Golden, CO 80401-3305 USA
| | - Mark F. Davis
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- National Renewable Energy Laboratory, Golden, CO 80401-3305 USA
| | - Stephen R. Decker
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
- National Renewable Energy Laboratory, Golden, CO 80401-3305 USA
| | - Michael G. Hahn
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Department of Plant Biology, University of Georgia, Athens, GA 30602 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Debra Mohnen
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602 USA
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
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30
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Amanda D, Doblin MS, MacMillan CP, Galletti R, Golz JF, Bacic A, Ingram GC, Johnson KL. Arabidopsis DEFECTIVE KERNEL1 regulates cell wall composition and axial growth in the inflorescence stem. PLANT DIRECT 2017; 1:e00027. [PMID: 31245676 PMCID: PMC6508578 DOI: 10.1002/pld3.27] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 10/15/2017] [Accepted: 10/16/2017] [Indexed: 05/10/2023]
Abstract
Axial growth in plant stems requires a fine balance between elongation and stem mechanical reinforcement to ensure mechanical stability. Strength is provided by the plant cell wall, the deposition of which must be coordinated with cell expansion and elongation to ensure that integrity is maintained during growth. Coordination of these processes is critical and yet poorly understood. The plant-specific calpain, DEFECTIVE KERNEL1 (DEK1), plays a key role in growth coordination in leaves, yet its role in regulating stem growth has not been addressed. Using plants overexpressing the active CALPAIN domain of DEK1 (CALPAIN OE) and a DEK1 knockdown line (amiRNA-DEK1), we undertook morphological, biochemical, biophysical, and microscopic analyses of mature inflorescence stems. We identify a novel role for DEK1 in the maintenance of cell wall integrity and coordination of growth during inflorescence stem development. CALPAIN OE plants are significantly reduced in stature and have short, thickened stems, while amiRNA-DEK1 lines have weakened stems that are unable to stand upright. Microscopic analyses of the stems identify changes in cell size, shape and number, and differences in both primary and secondary cell wall thickness and composition. Taken together, our results suggest that DEK1 influences primary wall growth by indirectly regulating cellulose and pectin deposition. In addition, we observe changes in secondary cell walls that may compensate for altered primary cell wall composition. We propose that DEK1 activity is required for the coordination of stem strengthening with elongation during axial growth.
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Affiliation(s)
- Dhika Amanda
- Max Planck Institute for Plant Breeding ResearchKölnGermany
| | - Monika S. Doblin
- ARC Centre of Excellence in Plant Cell WallsSchool of BioSciencesThe University of MelbourneParkvilleVICAustralia
| | | | - Roberta Galletti
- Laboratoire Reproduction et Développement des PlantesUniversité de Lyon CNRS INRA UCB Lyon 1LyonFrance
| | - John F. Golz
- School of BioSciencesThe University of MelbourneParkvilleVICAustralia
| | - Antony Bacic
- ARC Centre of Excellence in Plant Cell WallsSchool of BioSciencesThe University of MelbourneParkvilleVICAustralia
| | - Gwyneth C. Ingram
- Laboratoire Reproduction et Développement des PlantesUniversité de Lyon CNRS INRA UCB Lyon 1LyonFrance
| | - Kim L. Johnson
- ARC Centre of Excellence in Plant Cell WallsSchool of BioSciencesThe University of MelbourneParkvilleVICAustralia
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31
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Abstract
In plant tissues, cells are glued to each other by a pectic polysaccharide rich material known as middle lamella (ML). Along with many biological functions, the ML plays a crucial role in maintaining the structural integrity of plant tissues and organs, as it prevents the cells from separating or sliding against each other. The macromolecular organization and the material properties of the ML are different from those of the adjacent primary cell walls that envelop all plant cells and provide them with a stiff casing. Due to its nanoscale dimensions and the extreme challenge to access the structure for material characterization, the ML is poorly characterized in terms of its distinct material properties. This review explores the ML beyond its functionality as a gluing agent. The putative molecular interactions of constituent macromolecules within the ML and at the interface between ML and primary cell wall are discussed. The correlation between the spatiotemporal distribution of pectic polysaccharides in the different portions of the ML and the subcellular distribution of mechanical stresses within the plant tissue are analyzed.
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Affiliation(s)
- M S Zamil
- Department of Plant Science, McGill University, Macdonald Campus, 21111 Lakeshore, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
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32
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Corral-Martínez P, García-Fortea E, Bernard S, Driouich A, Seguí-Simarro JM. Ultrastructural Immunolocalization of Arabinogalactan Protein, Pectin and Hemicellulose Epitopes Through Anther Development in Brassica napus. PLANT & CELL PHYSIOLOGY 2016; 57:2161-2174. [PMID: 27481894 DOI: 10.1093/pcp/pcw133] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 07/20/2016] [Indexed: 05/07/2023]
Abstract
In this work, we performed an extensive and detailed analysis of the changes in cell wall composition during Brassica napus anther development. We used immunogold labeling to study the spatial and temporal patterns of the composition and distribution of different arabinogalactan protein (AGP), pectin, xyloglucan and xylan epitopes in high-pressure-frozen/freeze-substituted anthers, quantifying and comparing their relative levels in the different anther tissues and developmental stages. We used the following monoclonal antibodies: JIM13, JIM8, JIM14 and JIM16 for AGPs, LM5, LM6, JIM7, JIM5 and LM7 for pectins, CCRC-M1, CCRC-M89 and LM15 for xyloglucan, and LM11 for xylan. Each cell wall epitope showed a characteristic temporal and spatial labeling pattern. Microspore, pollen and tapetal cells showed similar patterns for each epitope, whereas the outermost anther layers (epidermis, endothecium and middle layers) presented remarkably different patterns. Our results suggested that AGPs, pectins, xyloglucan and xylan have specific roles during anther development. The AGP epitopes studied appeared to belong to AGPs specifically involved in microspore differentiation, and contributed first by the tapetum and then, upon tapetal dismantling, by the endothecium and middle layers. In contrast, the changes in pectin and hemicellulose epitopes suggested a specific role in anther dehiscence, facilitating anther wall weakening and rupture. The distribution of the different cell wall constituents is regulated in a tissue- and stage-specific manner, which seems directly related to the role of each tissue at each stage.
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Affiliation(s)
- Patricia Corral-Martínez
- COMAV, Universitat Politècnica de València, CPI, Edificio 8E, Escalera I, Camino de Vera, s/n, 46022, Valencia, Spain
| | - Edgar García-Fortea
- COMAV, Universitat Politècnica de València, CPI, Edificio 8E, Escalera I, Camino de Vera, s/n, 46022, Valencia, Spain
| | - Sophie Bernard
- Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV)-EA 4358, Plateforme d'Imagerie Cellulaire (PRIMACEN) et Grand Reseau de Recherche VASI de Haute Normandie, Normandie Université, Université de Rouen, 76821 Mont Saint Aignan, Cedex, France
| | - Azeddine Driouich
- Laboratoire Glycobiologie et Matrice Extracellulaire Végétale (Glyco-MEV)-EA 4358, Plateforme d'Imagerie Cellulaire (PRIMACEN) et Grand Reseau de Recherche VASI de Haute Normandie, Normandie Université, Université de Rouen, 76821 Mont Saint Aignan, Cedex, France
| | - Jose M Seguí-Simarro
- COMAV, Universitat Politècnica de València, CPI, Edificio 8E, Escalera I, Camino de Vera, s/n, 46022, Valencia, Spain
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33
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Abstract
This review is a short synopsis of some of the latest breakthroughs in the areas of lignocellulosic conversion to fuels and utilization of oils for biodiesel. Although four lignocellulosic ethanol factories have opened in the USA and hundreds of biodiesel installations are active worldwide, technological improvements are being discovered that will rapidly evolve the biofuels industry into a new paradigm. These discoveries involve the feedstocks as well as the technologies to process them.
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Affiliation(s)
- Elizabeth E Hood
- College of Agriculture and Technology, Arkansas State University, Arkanas, AR, USA
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34
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Swamy PS, Hu H, Pattathil S, Maloney VJ, Xiao H, Xue LJ, Chung JD, Johnson VE, Zhu Y, Peter GF, Hahn MG, Mansfield SD, Harding SA, Tsai CJ. Tubulin perturbation leads to unexpected cell wall modifications and affects stomatal behaviour in Populus. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:6507-18. [PMID: 26246616 PMCID: PMC4588895 DOI: 10.1093/jxb/erv383] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Cortical microtubules are integral to plant morphogenesis, cell wall synthesis, and stomatal behaviour, presumably by governing cellulose microfibril orientation. Genetic manipulation of tubulins often leads to abnormal plant development, making it difficult to probe additional roles of cortical microtubules in cell wall biogenesis. Here, it is shown that expressing post-translational C-terminal modification mimics of α-tubulin altered cell wall characteristics and guard cell dynamics in transgenic Populus tremula x alba that otherwise appear normal. 35S promoter-driven transgene expression was high in leaves but unusually low in xylem, suggesting high levels of tubulin transgene expression were not tolerated in wood-forming tissues during regeneration of transformants. Cellulose, hemicellulose, and lignin contents were unaffected in transgenic wood, but expression of cell wall-modifying enzymes, and extractability of lignin-bound pectin and xylan polysaccharides were increased in developing xylem. The results suggest that pectin and xylan polysaccharides deposited early during cell wall biogenesis are more sensitive to subtle tubulin perturbation than cellulose and matrix polysaccharides deposited later. Tubulin perturbation also affected guard cell behaviour, delaying drought-induced stomatal closure as well as light-induced stomatal opening in leaves. Pectins have been shown to confer cell wall flexibility critical for reversible stomatal movement, and results presented here are consistent with microtubule involvement in this process. Taken together, the data show the value of growth-compatible tubulin perturbations for discerning microtubule functions, and add to the growing body of evidence for microtubule involvement in non-cellulosic polysaccharide assembly during cell wall biogenesis.
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Affiliation(s)
- Prashant S Swamy
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA
| | - Hao Hu
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Sivakumar Pattathil
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA
| | - Victoria J Maloney
- Department of Wood Science, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Hui Xiao
- Laboratory for Macromolecular Analysis and Proteomics, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Liang-Jiao Xue
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Jeng-Der Chung
- Division of Silviculture, Taiwan Forestry Research Institute, Taipei 10066, Taiwan
| | - Virgil E Johnson
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Yingying Zhu
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Gary F Peter
- School of Forest Resources and Conservation, University of Florida, Gainesville, FL 32611, USA
| | - Michael G Hahn
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA
| | - Shawn D Mansfield
- Department of Wood Science, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Scott A Harding
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
| | - Chung-Jui Tsai
- School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602, USA Department of Genetics, University of Georgia, Athens, GA 30602, USA
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35
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Wang H, Mao Y, Yang J, He Y. TCP24 modulates secondary cell wall thickening and anther endothecium development. FRONTIERS IN PLANT SCIENCE 2015; 6:436. [PMID: 26157444 PMCID: PMC4478849 DOI: 10.3389/fpls.2015.00436] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Accepted: 05/27/2015] [Indexed: 05/19/2023]
Abstract
miR319-targeted TCP genes are believed to regulate cell division in leaves and floral organs. However, it remains unknown whether these genes are involved in cell wall development. Here, we report that TCP24 negatively regulates secondary wall thickening in floral organs and roots. The overexpression of the miR319a-resistant version of TCP24 in Arabidopsis disrupted the thickening of secondary cell walls in the anther endothecium, leading to male sterility because of arrested anther dehiscence and pollen release. Several genes linked to secondary cell wall biogenesis and thickening were down-regulated in these transgenic plants. By contrast, the inhibition of TCP24 using the ectopic expression of a TCP24-SRDX repressor fusion protein, or the silencing of TCP genes by miR319a overexpression, increased cell wall lignification and the enhanced secondary cell wall thickening. Our results suggest that TCP24 acts as an important regulator of secondary cell wall thickening and modulates anther endothecium development.
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Affiliation(s)
| | | | | | - Yuke He
- National Key Laboratory of Plant Molecular Genetics, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesShanghai, China
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36
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Loqué D, Scheller HV, Pauly M. Engineering of plant cell walls for enhanced biofuel production. CURRENT OPINION IN PLANT BIOLOGY 2015; 25:151-61. [PMID: 26051036 DOI: 10.1016/j.pbi.2015.05.018] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Revised: 05/07/2015] [Accepted: 05/16/2015] [Indexed: 05/17/2023]
Abstract
The biomass of plants consists predominately of cell walls, a sophisticated composite material composed of various polymer networks including numerous polysaccharides and the polyphenol lignin. In order to utilize this renewable, highly abundant resource for the production of commodity chemicals such as biofuels, major hurdles have to be surpassed to reach economical viability. Recently, major advances in the basic understanding of the synthesis of the various wall polymers and its regulation has enabled strategies to alter the qualitative composition of wall materials. Such emerging strategies include a reduction/alteration of the lignin network to enhance polysaccharide accessibility, reduction of polymer derived processing inhibitors, and increases in polysaccharides with a high hexose/pentose ratio.
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Affiliation(s)
- Dominique Loqué
- Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA
| | - Henrik V Scheller
- Joint BioEnergy Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94702, USA
| | - Markus Pauly
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94702, USA.
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37
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Biswal AK, Hao Z, Pattathil S, Yang X, Winkeler K, Collins C, Mohanty SS, Richardson EA, Gelineo-Albersheim I, Hunt K, Ryno D, Sykes RW, Turner GB, Ziebell A, Gjersing E, Lukowitz W, Davis MF, Decker SR, Hahn MG, Mohnen D. Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:41. [PMID: 25802552 PMCID: PMC4369864 DOI: 10.1186/s13068-015-0218-y] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Accepted: 02/03/2015] [Indexed: 05/17/2023]
Abstract
BACKGROUND The inherent recalcitrance of woody bioenergy feedstocks is a major challenge for their use as a source of second-generation biofuel. Secondary cell walls that constitute the majority of hardwood biomass are rich in cellulose, xylan, and lignin. The interactions among these polymers prevent facile accessibility and deconstruction by enzymes and chemicals. Plant biomass that can with minimal pretreatment be degraded into sugars is required to produce renewable biofuels in a cost-effective manner. RESULTS GAUT12/IRX8 is a putative glycosyltransferase proposed to be involved in secondary cell wall glucuronoxylan and/or pectin biosynthesis based on concomitant reductions of both xylan and the pectin homogalacturonan (HG) in Arabidopsis irx8 mutants. Two GAUT12 homologs exist in Populus trichocarpa, PtGAUT12.1 and PtGAUT12.2. Knockdown expression of both genes simultaneously has been shown to reduce xylan content in Populus wood. We tested the proposition that RNA interference (RNAi) downregulation of GAUT12.1 alone would lead to increased sugar release in Populus wood, that is, reduced recalcitrance, based on the hypothesis that GAUT12 synthesizes a wall structure required for deposition of xylan and that cell walls with less xylan and/or modified cell wall architecture would have reduced recalcitrance. Using an RNAi approach, we generated 11 Populus deltoides transgenic lines with 50 to 67% reduced PdGAUT12.1 transcript expression compared to wild type (WT) and vector controls. Ten of the eleven RNAi lines yielded 4 to 8% greater glucose release upon enzymatic saccharification than the controls. The PdGAUT12.1 knockdown (PdGAUT12.1-KD) lines also displayed 12 to 52% and 12 to 44% increased plant height and radial stem diameter, respectively, compared to the controls. Knockdown of PdGAUT12.1 resulted in a 25 to 47% reduction in galacturonic acid and 17 to 30% reduction in xylose without affecting total lignin content, revealing that in Populus wood as in Arabidopsis, GAUT12 affects both pectin and xylan formation. Analyses of the sugars present in sequential cell wall extracts revealed a reduction of glucuronoxylan and pectic HG and rhamnogalacturonan in extracts from PdGAUT12.1-KD lines. CONCLUSIONS The results show that downregulation of GAUT12.1 leads to a reduction in a population of xylan and pectin during wood formation and to reduced recalcitrance, more easily extractable cell walls, and increased growth in Populus.
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Affiliation(s)
- Ajaya K Biswal
- />Department of Biochemistry and Molecular Biology, University of Georgia, B122 Life Sciences Bldg., Athens, GA 30602 USA
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Zhangying Hao
- />Department of Plant Biology, University of Georgia, 2502 Miller Plant Sciences, Athens, GA 30602 USA
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Sivakumar Pattathil
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Xiaohan Yang
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Kim Winkeler
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />ArborGen Inc., 2011 Broadbank Ct, Ridgeville, SC 29472 USA
| | - Cassandra Collins
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />ArborGen Inc., 2011 Broadbank Ct, Ridgeville, SC 29472 USA
| | - Sushree S Mohanty
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Elizabeth A Richardson
- />Department of Plant Biology, University of Georgia, 2502 Miller Plant Sciences, Athens, GA 30602 USA
| | - Ivana Gelineo-Albersheim
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Kimberly Hunt
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - David Ryno
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Robert W Sykes
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Geoffrey B Turner
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Angela Ziebell
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Erica Gjersing
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Wolfgang Lukowitz
- />Department of Plant Biology, University of Georgia, 2502 Miller Plant Sciences, Athens, GA 30602 USA
| | - Mark F Davis
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Stephen R Decker
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
- />National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, CO 80401-3305 USA
| | - Michael G Hahn
- />Department of Plant Biology, University of Georgia, 2502 Miller Plant Sciences, Athens, GA 30602 USA
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
| | - Debra Mohnen
- />Department of Biochemistry and Molecular Biology, University of Georgia, B122 Life Sciences Bldg., Athens, GA 30602 USA
- />Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
- />DOE-BioEnergy Science Center (BESC), Oak Ridge, USA
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38
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Lannoo N, Van Damme EJM, Albenne C, Jamet E. Plant Glycobiology-a diverse world of lectins, glycoproteins, glycolipids and glycans. FRONTIERS IN PLANT SCIENCE 2014; 5:604. [PMID: 25408698 PMCID: PMC4219397 DOI: 10.3389/fpls.2014.00604] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Accepted: 10/16/2014] [Indexed: 05/05/2023]
Affiliation(s)
- Nausicaä Lannoo
- Department of Molecular Biotechnology, Ghent UniversityGhent, Belgium
| | - Els J. M. Van Damme
- Department of Molecular Biotechnology, Ghent UniversityGhent, Belgium
- *Correspondence:
| | - Cécile Albenne
- Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Paul Sabatier-Toulouse 3/CNRSCastanet-Tolosan, France
| | - Elisabeth Jamet
- Laboratoire de Recherche en Sciences Végétales, UMR 5546, Université Paul Sabatier-Toulouse 3/CNRSCastanet-Tolosan, France
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