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Abdoli M, Amerian MR, Heidari M, Ebrahimi A. Synergistic effects of melatonin and 24-epibrassinolide on chickpea water deficit tolerance. BMC PLANT BIOLOGY 2024; 24:671. [PMID: 39004702 PMCID: PMC11247889 DOI: 10.1186/s12870-024-05380-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Accepted: 07/05/2024] [Indexed: 07/16/2024]
Abstract
BACKGROUND Water deficiency stress reduces yield in grain legumes, primarily due to a decrease in the pods number. Melatonin (ML) and 24-epibrassinolide (EBL) are recognized for their hormone-like properties that improve plant tolerance to abiotic stresses. This study aimed to assess the impact of different concentrations of ML (0, 100, and 200 µM) and EBL (0, 3, and 6 µM) on the growth, biochemical, and physiological characteristics of chickpea plants under water-stressed conditions. RESULTS The study's findings indicated that under water-stressed conditions, a decrease in seed (30%) and pod numbers (31%), 100-seed weight (17%), total chlorophyll content (46%), stomatal conductance (33%), as well as an increase in H2O2 (62%), malondialdehyde content (40%), and electrolyte leakage index (40%), resulted in a 40% reduction in chickpea plants grain yield. Our findings confirmed that under water-stressed conditions, seed oil, seed oil yield, and seed protein yield dropped by 20%, 55%, and 36%, respectively. The concurrent exogenous application of ML and EBL significantly reduces oxidative stress, plasma membrane damage, and reactive oxygen species (ROS) content. This treatment also leads to increased yield and its components, higher pigment content, enhanced oil and protein yield, and improved enzymatic and non-enzymatic antioxidant activities such as catalase, superoxide dismutase, polyphenol oxidase, ascorbate peroxidase, guaiacol peroxidase, flavonoid, and carotenoid. Furthermore, it promotes the accumulation of osmoprotectants such as proline, total soluble protein, and sugars. CONCLUSIONS Our study found that ML and EBL act synergistically to regulate plant growth, photosynthesis, osmoprotectants accumulation, antioxidant defense systems, and maintain ROS homeostasis, thereby mitigating the adverse effects of water deficit conditions. ML and EBL are key regulatory network components in stressful conditions, with significant potential for future research and practical applications. The regulation metabolic pathways of ML and EBL in water-stressed remains unknown. As a result, future research should aim to elucidate the molecular mechanisms by employing genome editing, RNA sequencing, microarray, transcriptomic, proteomic, and metabolomic analyses to identify the mechanisms involved in plant responses to exogenous ML and EBL under water deficit conditions. Furthermore, the economical applications of synthetic ML and EBL could be an interesting strategy for improving plant tolerance.
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Affiliation(s)
- Matin Abdoli
- Agronomy and Plant Breeding Department, Faculty of Agriculture, Shahrood University of Technology, Semnan, Iran
| | - Mohamad Reza Amerian
- Agronomy and Plant Breeding Department, Faculty of Agriculture, Shahrood University of Technology, Semnan, Iran.
| | - Mostafa Heidari
- Agronomy and Plant Breeding Department, Faculty of Agriculture, Shahrood University of Technology, Semnan, Iran
| | - Amin Ebrahimi
- Agronomy and Plant Breeding Department, Faculty of Agriculture, Shahrood University of Technology, Semnan, Iran.
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2
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Martina M, De Rosa V, Magon G, Acquadro A, Barchi L, Barcaccia G, De Paoli E, Vannozzi A, Portis E. Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family. FRONTIERS IN PLANT SCIENCE 2024; 15:1278760. [PMID: 38375087 PMCID: PMC10875072 DOI: 10.3389/fpls.2024.1278760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 01/22/2024] [Indexed: 02/21/2024]
Abstract
This review highlights -omics research in Solanaceae family, with a particular focus on resilient traits. Extensive research has enriched our understanding of Solanaceae genomics and genetics, with historical varietal development mainly focusing on disease resistance and cultivar improvement but shifting the emphasis towards unveiling resilience mechanisms in genebank-preserved germplasm is nowadays crucial. Collecting such information, might help researchers and breeders developing new experimental design, providing an overview of the state of the art of the most advanced approaches for the identification of the genetic elements laying behind resilience. Building this starting point, we aim at providing a useful tool for tackling the global agricultural resilience goals in these crops.
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Affiliation(s)
- Matteo Martina
- Department of Agricultural, Forest and Food Sciences (DISAFA), Plant Genetics, University of Torino, Grugliasco, Italy
| | - Valeria De Rosa
- Department of Agricultural, Food, Environmental and Animal Sciences (DI4A), University of Udine, Udine, Italy
| | - Gabriele Magon
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Laboratory of Plant Genetics and Breeding, University of Padua, Legnaro, Italy
| | - Alberto Acquadro
- Department of Agricultural, Forest and Food Sciences (DISAFA), Plant Genetics, University of Torino, Grugliasco, Italy
| | - Lorenzo Barchi
- Department of Agricultural, Forest and Food Sciences (DISAFA), Plant Genetics, University of Torino, Grugliasco, Italy
| | - Gianni Barcaccia
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Laboratory of Plant Genetics and Breeding, University of Padua, Legnaro, Italy
| | - Emanuele De Paoli
- Department of Agricultural, Food, Environmental and Animal Sciences (DI4A), University of Udine, Udine, Italy
| | - Alessandro Vannozzi
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Laboratory of Plant Genetics and Breeding, University of Padua, Legnaro, Italy
| | - Ezio Portis
- Department of Agricultural, Forest and Food Sciences (DISAFA), Plant Genetics, University of Torino, Grugliasco, Italy
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3
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Song X, Zhu L, Wang D, Liang L, Xiao J, Tang W, Xie M, Zhao Z, Lai Y, Sun B, Tang Y, Li H. Molecular Regulatory Mechanism of Exogenous Hydrogen Sulfide in Alleviating Low-Temperature Stress in Pepper Seedlings. Int J Mol Sci 2023; 24:16337. [PMID: 38003525 PMCID: PMC10671541 DOI: 10.3390/ijms242216337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/11/2023] [Accepted: 11/12/2023] [Indexed: 11/26/2023] Open
Abstract
Pepper (Capsicum annuum L.) is sensitive to low temperatures, with low-temperature stress affecting its plant growth, yield, and quality. In this study, we analyzed the effects of exogenous hydrogen sulfide (H2S) on pepper seedlings subjected to low-temperature stress. Exogenous H2S increased the content of endogenous H2S and its synthetase activity, enhanced the antioxidant capacity of membrane lipids, and protected the integrity of the membrane system. Exogenous H2S also promoted the Calvin cycle to protect the integrity of photosynthetic organs; enhanced the photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr), and photosynthesis; and reduced the intercellular CO2 concentration (Ci). Moreover, the activities of superoxide dismutase, peroxidase, catalase, and anti-cyclic glutathione (ASA-GSH) oxidase were improved to decompose excess reactive oxygen species (ROS), enhance the oxidative stress and detoxification ability of pepper seedlings, and improve the resistance to low-temperature chilling injury in 'Long Yun2' pepper seedlings. In addition, the H2S scavenger hypotaurine (HT) aggravated the ROS imbalance by reducing the endogenous H2S content, partially eliminating the beneficial effects of H2S on the oxidative stress and antioxidant defense system, indicating that H2S can effectively alleviate the damage of low temperature on pepper seedlings. The results of transcriptome analysis showed that H2S could induce the MAPK-signaling pathway and plant hormone signal transduction; upregulate the expression of transcription factors WRKY22 and PTI6; induce defense genes; and activate the ethylene and gibberellin synthesis receptors ERF1, GDI2, and DELLA, enhancing the resistance to low-temperature chilling injury of pepper seedlings. The plant-pathogen interaction was also significantly enriched, suggesting that exogenous H2S also promotes the expression of genes related to plant-pathogen interaction. The results of this study provide novel insights into the molecular mechanisms and genetic modifications of H2S that mitigate the hypothermic response.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Huanxiu Li
- College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (X.S.); (L.Z.); (D.W.)
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4
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Ding M, Wang L, Sun Y, Zhang J, Chen Y, Wang X, Liu L. Transcriptome analysis of brassinolide under low temperature stress in winter wheat. AOB PLANTS 2023; 15:plad005. [PMID: 37025104 PMCID: PMC10071052 DOI: 10.1093/aobpla/plad005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 02/01/2023] [Indexed: 06/19/2023]
Abstract
Low temperatures are the main abiotic factor affecting wheat growth. Brassinolide is a novel plant hormone that can improve the cold resistance of plants; however, the molecular mechanism of brassinolide in winter wheat at low temperatures remains unclear. In this study, winter wheat Dongnong dongmai 1 was sprayed with 0.01, 0.1, or 1.0 mg·L-1 brassinolide (BR) at the three-leaf stage, and tillering nodes were sampled at different temperatures (5, -10 and -25 °C), and then physiological indexes were determined and the transcriptome was sequenced. The results showed that the optimum concentration of brassinolide for cold resistance is 0.1 mg·L-1. A total of 15 302 (8198 upregulated and 7104 downregulated) differentially expressed genes (DEGs) were identified in the B1 vs D1 comparison (B1 represents 5 °C 0.1 mg·L-1 BR treatment, D1 represents 5 °C control); 3386 (1930 upregulated and 1456 downregulated) differentially expressed genes (DEGs) were identified in the B2 vs D2 comparison (B2 represents -10 °C 0.1 mg·L-1 BR treatment, D2 represents -10 °C control); and 2684 (2102 upregulated and 582 downregulated) differentially expressed genes (DEGs) were identified in the B3 vs D3 comparison (B3 represents -25 °C 0.1 mg·L-1 BR treatment, D3 represents -25 °C control). Further studies showed that these DEGs were mainly involved in carbon fixation in photosynthetic organs, photosynthesis and plant-pathogen interactions, all of which were related to stress and energy metabolism. This indicates that brassinolide can produce substances that improve cold resistance in wheat seedlings. This study provides a theoretical basis for further research on the improvement of cold resistance in winter wheat by brassinolide.
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Affiliation(s)
- Meiyun Ding
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Luyao Wang
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Yuting Sun
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Junbao Zhang
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Yushu Chen
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Xuesong Wang
- College of Life Science and Agriculture Forestry, Qiqihar University, 42 Wenhua street, Qiqihar 161006, Heilongjiang, China
| | - Lijie Liu
- Corresponding author’s e-mail address:
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Li Y, Hua J, Hou X, Qi N, Li C, Wang C, Yao Y, Huang D, Zhang H, Liao W. Brassinosteroids is involved in methane-induced adventitious root formation via inducing cell wall relaxation in marigold. BMC PLANT BIOLOGY 2023; 23:2. [PMID: 36588160 PMCID: PMC9806907 DOI: 10.1186/s12870-022-04014-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 12/21/2022] [Indexed: 05/05/2023]
Abstract
BACKGROUND Methane (CH4) and brassinosteroids (BRs) are important signaling molecules involved in a variety of biological processes in plants. RESULTS Here, marigold (Tagetes erecta L. 'Marvel') was used to investigate the role and relationship between CH4 and BRs during adventitious root (AR) formation. The results showed a dose-dependent effect of CH4 and BRs on rooting, with the greatest biological effects of methane-rich water (MRW, CH4 donor) and 2,4-epibrassinolide (EBL) at 20% and 1 μmol L- 1, respectively. The positive effect of MRW on AR formation was blocked by brassinoazole (Brz, a synthetic inhibitor of EBL), indicating that BRs might be involved in MRW-regulated AR formation. MRW promoted EBL accumulation during rooting by up-regulating the content of campestanol (CN), cathasterone (CT), and castasterone (CS) and the activity of Steroid 5α-reductase (DET2), 22α-hydroxylase (DWF4), and BR-6-oxidase (BR6ox), indicating that CH4 could induce endogenous brassinolide (BR) production during rooting. Further results showed that MRW and EBL significantly down-regulated the content of cellulose, hemicellulose and lignin during rooting and significantly up-regulated the hydrolase activity, i.e. cmcase, xylanase and laccase. In addition, MRW and EBL also significantly promoted the activity of two major cell wall relaxing factors, xyloglucan endotransglucosylase/hydrolase (XTH) and peroxidase, which in turn promoted AR formation. While, Brz inhibited the role of MRW on these substances. CONCLUSIONS BR might be involved in CH4-promoted AR formation by increasing cell wall relaxation.
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Affiliation(s)
- Yihua Li
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
- College of Agriculture and Ecological Engineering, Hexi University, No.846 Beihuan Road, Zhangye, 734000, Gansu, China
| | - Jun Hua
- Cash-Crops Technology Extension Centre of Zhangye City, No.675 Nanhuan Road, Zhangye, 734000, Gansu, China
| | - Xuemei Hou
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Nana Qi
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Changxia Li
- College of Agriculture, Guangxi University, No.100 East University Road, Nanning, 530004, China
| | - Chunlei Wang
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Yandong Yao
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Dengjing Huang
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Hongsheng Zhang
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China
| | - Weibiao Liao
- College of Horticulture, Gansu Agricultural University, 1 Yingmen Village, Anning District, Lanzhou, 730070, China.
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6
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Escalante C, Sela N, Valverde RA. Transcriptome analysis of two near-isogenic lines of bell pepper ( Capsicum annuum) infected with bell pepper endornavirus and pepper mild mottle virus. Front Genet 2023; 14:1182578. [PMID: 37124621 PMCID: PMC10133535 DOI: 10.3389/fgene.2023.1182578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 03/31/2023] [Indexed: 05/02/2023] Open
Affiliation(s)
- Cesar Escalante
- Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, United States
- Department of Plant Pathology and Crop Physiology, Louisiana State University, Agricultural Center, Baton Rouge, LA, United States
- *Correspondence: Cesar Escalante,
| | - Noa Sela
- Department of Plant Pathology and Weed Research, The Volcani Center-ARO, Bet-Dagan, Israel
| | - Rodrigo A. Valverde
- Department of Plant Pathology and Crop Physiology, Louisiana State University, Agricultural Center, Baton Rouge, LA, United States
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Chen C, Wu XM, Pan L, Yang YT, Dai HB, Hua B, Miao MM, Zhang ZP. Effects of Exogenous α-Naphthaleneacetic Acid and 24-Epibrassinolide on Fruit Size and Assimilate Metabolism-Related Sugars and Enzyme Activities in Giant Pumpkin. Int J Mol Sci 2022; 23:13157. [PMID: 36361943 PMCID: PMC9656333 DOI: 10.3390/ijms232113157] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Revised: 10/20/2022] [Accepted: 10/21/2022] [Indexed: 01/02/2024] Open
Abstract
Size is the most important quality attribute of giant pumpkin fruit. Different concentrations and application frequencies of α-naphthaleneacetic acid (NAA) and 24-epibrassinolide (EBR) were sprayed on the leaves and fruits of giant pumpkin at different growth stages to determine their effects and the mechanism responsible for fruit size increase. NAA+EBR application improved source strength, and further analysis indicated that NAA+EBR markedly boosted net photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr) and the expression level and activity of galactitol synthetase (GolS), raffinose synthetase (RS), and stachyose synthetase (STS), resulting in an increase in the synthesis of photoassimilate, especially stachyose. Concomitantly, NAA+EBR spray increased stachyose and sucrose contents throughout pumpkin fruit growth and the concentrations of glucose and fructose at 0 and 20 days post-anthesis (DPA) in peduncle phloem sap, implying that such treatment improved the efficiency of assimilate transport from the peduncle to the fruit. Furthermore, it improved the expression and activity of alkaline α-galactosidase (AGA), facilitating assimilate unloading, providing carbon skeletons and energy for fruit growth, and increasing fruit weight by more than 44.1%. Therefore, exogenous NAA and EBR increased source capacity, transportation efficiency, and sink strength, overall promoting the synthesis and distribution of photoassimilate, ultimately increasing fruit size.
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Affiliation(s)
- Chen Chen
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Xuan-Min Wu
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Liu Pan
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Ya-Ting Yang
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Hai-Bo Dai
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Bing Hua
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Min-Min Miao
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou 225009, China
- Key Laboratory of Plant Functional Genomics of the Ministry of Education, Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Yangzhou University, Yangzhou 225009, China
| | - Zhi-Ping Zhang
- College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
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Li W, Sun J, Zhang X, Ahmad N, Hou L, Zhao C, Pan J, Tian R, Wang X, Zhao S. The Mechanisms Underlying Salt Resistance Mediated by Exogenous Application of 24-Epibrassinolide in Peanut. Int J Mol Sci 2022; 23:ijms23126376. [PMID: 35742819 PMCID: PMC9224412 DOI: 10.3390/ijms23126376] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 05/26/2022] [Accepted: 06/04/2022] [Indexed: 12/10/2022] Open
Abstract
Peanut is one of the most important oil crops in the world, the growth and productivity of which are severely affected by salt stress. 24-epibrassinolide (EBL) plays an important role in stress resistances. However, the roles of exogenous EBL on the salt tolerance of peanut remain unclear. In this study, peanut seedlings treated with 150 mM NaCl and with or without EBL spray were performed to investigate the roles of EBL on salt resistance. Under 150 mM NaCl conditions, foliar application of 0.1 µM EBL increased the activity of catalase and thereby could eliminate reactive oxygen species (ROS). Similarly, EBL application promoted the accumulation of proline and soluble sugar, thus maintaining osmotic balance. Furthermore, foliar EBL spray enhanced the total chlorophyll content and high photosynthesis capacity. Transcriptome analysis showed that under NaCl stress, EBL treatment up-regulated expression levels of genes encoding peroxisomal nicotinamide adenine dinucleotide carrier (PMP34), probable sucrose-phosphate synthase 2 (SPS2) beta-fructofuranosidase (BFRUCT1) and Na+/H+ antiporters (NHX7 and NHX8), while down-regulated proline dehydrogenase 2 (PRODH). These findings provide valuable resources for salt resistance study in peanut and lay the foundation for using BR to enhance salt tolerance during peanut production.
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Affiliation(s)
- Wenjiao Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
- College of Life Sciences, Shandong Normal University, Jinan 250014, China
| | - Jie Sun
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
- College of Life Sciences, Shandong Normal University, Jinan 250014, China
| | - Xiaoqian Zhang
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
- College of Life Sciences, Shandong Normal University, Jinan 250014, China
| | - Naveed Ahmad
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
| | - Lei Hou
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
| | - Chuanzhi Zhao
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
| | - Jiaowen Pan
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
| | - Ruizheng Tian
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
| | - Xingjun Wang
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
- College of Life Sciences, Shandong Normal University, Jinan 250014, China
| | - Shuzhen Zhao
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan 250100, China; (W.L.); (J.S.); (X.Z.); (N.A.); (L.H.); (C.Z.); (J.P.); (R.T.); (X.W.)
- College of Life Sciences, Shandong Normal University, Jinan 250014, China
- Correspondence: or
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9
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Ding D, Li J, Xie J, Li N, Bakpa EP, Han K, Yang Y, Wang C. Exogenous Zeaxanthin Alleviates Low Temperature Combined with Low Light Induced Photosynthesis Inhibition and Oxidative Stress in Pepper (Capsicum annuum L.) Plants. Curr Issues Mol Biol 2022; 44:2453-2471. [PMID: 35735609 PMCID: PMC9221838 DOI: 10.3390/cimb44060168] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 05/17/2022] [Accepted: 05/23/2022] [Indexed: 11/16/2022] Open
Abstract
Low temperature combined with low light (LL) affects crop production, especially the yield and quality of peppers, in northwest China during the winter and spring seasons. Zeaxanthin (Z) is a known lipid protectant and active oxygen scavenger. However, whether exogenous Z can mitigate LL-induced inhibition of photosynthesis and oxidative stress in peppers remains unclear. In this study, we investigated the effects of exogenous Z on photosynthesis and the antioxidant machinery of pepper seedlings subject to LL stress. The results showed that the growth and photosynthesis of pepper seedlings were significantly inhibited by LL stress. In addition, the antioxidant machinery was disturbed by the uneven production and elimination of reactive oxygen species (ROS), which resulted in damage to the pepper. For example, membrane lipid peroxidation increased ROS content, and so on. However, exogenous application of Z before LL stress significantly increased the plant height, stem diameter, net photosynthetic rate (Pn), and stomata, which were obviously closed at LL. The activities of antioxidant enzymes superoxide dismutase (SOD), catalase (CAT), mono de-hydroascorbate reductase (MDHAR), de-hydroascorbate reductase (DHAR), ascorbate peroxidase (APX), and ascorbate oxidase (AAO) improved significantly due to the increased expression of CaSOD, CaCAT, CaAPX, CaMDHAR, and CaDHAR. The ascorbic (AsA) and glutathione (GSH) contents and ascorbic/dehydroascorbate (AsA/DHA) and glutathione/oxidized glutathione (GSH/GSSG) ratios also increased significantly, resulting in the effective removal of hydrogen peroxide (H2O2) and superoxide anions (O2•−) caused by LL stress. Thus, pre-treatment with Z significantly reduced ROS accumulation in pepper seedlings under LL stress by enhancing the activity of antioxidant enzymes and accumulation of components of the ascorbate–glutathione (AsA–GSH) cycle and upregulated key genes in the AsA–GSH cycle.
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10
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Photosynthesis Mediated by RBOH-Dependent Signaling Is Essential for Cold Stress Memory. Antioxidants (Basel) 2022; 11:antiox11050969. [PMID: 35624833 PMCID: PMC9137663 DOI: 10.3390/antiox11050969] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 05/10/2022] [Accepted: 05/11/2022] [Indexed: 11/16/2022] Open
Abstract
Cold tolerance is improved by cold stress acclimation (CS-ACC), and the cold tolerance level is ‘remembered’ by plants. However, the underlying signaling mechanisms remain largely unknown. Here, the CS memory mechanism was studied by bioinformation, plant physiological and photosynthetic parameters, and gene expression. We found that CS-ACC induced the acquisition of CS memory and enhanced the maintenance of acquired cold tolerance (MACT) in cucumber seedlings. The H2O2 content and NADPH oxidase activity encoded by CsRBOH was maintained at higher levels during recovery after CS-ACC and inhibition of RBOH-dependent signaling after CS-ACC resulted in a decrease in the H2O2 content, NADPH oxidase activity, and MACT. CsRBOH2, 3, 4, and 5 showed high expression during recovery after CS-ACC. Many BZR-binding sites were identified in memory-responsive CsRBOHs promoters, and CsBZR1 and 3 showed high expression during recovery after CS-ACC. Inhibition of RBOH-dependent signaling or brassinosteroids affected the maintenance of the expression of these memory-responsive CsRBOHs and CsBZRs. The photosynthetic efficiency (PE) decreased but then increased with the prolonged recovery after CS-ACC, and was higher than the control at 48 h of recovery; however, inhibition of RBOH-dependent signaling resulted in a lower PE. Further etiolated seedlings experiments showed that a photosynthetic capacity was necessary for CS memory. Therefore, photosynthesis mediated by RBOH-dependent signaling is essential for CS memory.
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11
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Helaly MN, El-Hoseiny HM, Elsheery NI, Kalaji HM, de los Santos-Villalobos S, Wróbel J, Hassan IF, Gaballah MS, Abdelrhman LA, Mira AM, Alam-Eldein SM. 5-Aminolevulinic Acid and 24-Epibrassinolide Improve the Drought Stress Resilience and Productivity of Banana Plants. PLANTS (BASEL, SWITZERLAND) 2022; 11:743. [PMID: 35336624 PMCID: PMC8949027 DOI: 10.3390/plants11060743] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 02/17/2022] [Accepted: 03/01/2022] [Indexed: 05/14/2023]
Abstract
Plant growth, development, and productivity are adversely affected under drought conditions. Previous findings indicated that 5-aminolevulinic acid (ALA) and 24-epibrassinolide (EBL) play an important role in the plant response to adverse environmental conditions. This study demonstrated the role of ALA and EBL on oxidative stress and photosynthetic capacity of drought-stressed 'Williams' banana grown under the Egyptian semi-arid conditions. Exogenous application of either ALA or EBL at concentrations of 15, 30, and 45 mg·L-1 significantly restored plant photosynthetic activity and increased productivity under reduced irrigation; this was equivalent to 75% of the plant's total water requirements. Both compounds significantly reduced drought-induced oxidative damages by increasing antioxidant enzyme activities (superoxide dismutase 'SOD', catalase 'CAT', and peroxidase 'POD') and preserving chloroplast structure. Lipid peroxidation, electrolyte loss and free non-radical H2O2 formation in the chloroplast were noticeably reduced compared to the control, but chlorophyll content and photosynthetic oxygen evolution were increased. Nutrient uptake, auxin and cytokinin levels were also improved with the reduced abscisic acid levels. The results indicated that ALA and EBL could reduce the accumulation of reactive oxygen species and maintain the stability of the chloroplast membrane structure under drought stress. This study suggests that the use of ALA or EBL at 30 mg·L-1 can promote the growth, productivity and fruit quality of drought-stressed banana plants.
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Affiliation(s)
- Mohamed N. Helaly
- Agricultural Botany Department, Faculty of Agriculture, Mansoura University, Mansoura 35516, Egypt;
| | - Hanan M. El-Hoseiny
- Horticulture Department, Faculty of Desert and Environmental Agriculture, Matrouh University, Fouka 51511, Egypt;
| | - Nabil I. Elsheery
- Agricultural Botany Department, Faculty of Agriculture, Tanta University, Tanta 31527, Egypt;
| | - Hazem M. Kalaji
- Department of Plant Physiology, Institute of Biology, Warsaw University of Life Sciences SGGW, 02-776 Warsaw, Poland; or
- Institute of Technology and Life Sciences, National Research Institute, Falenty, Al.Hrabska 3, 05-090 Pruszków, Poland
| | | | - Jacek Wróbel
- Department of Bioengineering, West Pomeranian University of Technology, 71-434 Szczecin, Poland;
| | - Islam F. Hassan
- Water Relations and Field Irrigation Department, Agricultural and Biological Research Institute, National Research Center, Giza 12622, Egypt; (I.F.H.); (M.S.G.)
| | - Maybelle S. Gaballah
- Water Relations and Field Irrigation Department, Agricultural and Biological Research Institute, National Research Center, Giza 12622, Egypt; (I.F.H.); (M.S.G.)
| | - Lamyaa A. Abdelrhman
- Soil, Water and Environment Research Institute (SWERI), Agricultural Research Center, Giza 12619, Egypt;
| | - Amany M. Mira
- Department of Horticulture, Faculty of Agriculture, Tanta University, Tanta 31527, Egypt;
| | - Shamel M. Alam-Eldein
- Department of Horticulture, Faculty of Agriculture, Tanta University, Tanta 31527, Egypt;
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12
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Rabuma T, Gupta OP, Yadav M, Chhokar V. Integrative RNA-Seq analysis of Capsicum annuum L. -Phytophthora capsici L. pathosystem reveals molecular cross-talk and activation of host defence response. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2022; 28:171-188. [PMID: 35221578 PMCID: PMC8847656 DOI: 10.1007/s12298-021-01122-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 12/22/2021] [Accepted: 12/28/2021] [Indexed: 05/09/2023]
Abstract
UNLABELLED Chili pepper (Capsicum annuum L.) is economically one of the most important spice. But, it's productivity is highly affected by the pathogen, Phytophthora capsici L. Our current understanding of the molecular mechanisms associated with the defence response in C. annuum-P. capsici pathosystem is limited. The current study used RNA-seq technology to dissect the genes associated with defence response against P. capsici infection in two contrasting landraces, i.e. GojamMecha_9086 (Resistant) and Dabat_80045 (Susceptible) exposed to P. capsici infection. The transcriptomes from four leaf samples (RC, RI, SC and SI) of chili pepper resulted in a total of 118,879 assembled transcripts along with 52,384 pooled unigenes. The enrichment analysis of the transcripts indicated 23 different KEGG pathways under five main categories. Out of 774 and 484 differentially expressed genes (DEGs) of two landraces (under study), respectively, 57 and 29 DEGs were observed as associated with defence responses against P. capsici infection in RC vs. RI and SC vs. SI leaf samples, respectively. qRT-PCR analysis of six randomly selected genes validated the results of Illumina NextSeq500 sequencing. A total of 58 transcription factor families (bHLH most abundant) and 2095 protein families (Protein kinase most abundant) were observed across all the samples with maximum hits in RI and SI samples. Expression analysis revealed differential regulation of genes associated with defence and signalling response with shared coordination of molecular function, cellular component and biological processing. The results presented here would enhance our present understanding of the defence response in chili pepper against P. capsici infection, which the molecular breeders could utilize to develop resistant chili genotypes. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s12298-021-01122-y.
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Affiliation(s)
- Tilahun Rabuma
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana India
- Department of Biotechnology, College of Natural and Computational Science, Wolkite University, Wolkite, Ethiopia
| | - Om Prakash Gupta
- Division of Quality and Basic Sciences, ICAR-Indian Institute of Wheat and Barley Research, Karnal, Haryana 132001 India
| | - Manju Yadav
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana India
| | - Vinod Chhokar
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana India
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13
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24-epibrassinolide enhanced cold tolerance of winter turnip rape (Brassica rapa L.). Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00834-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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14
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Shi L, Zhang K, Xie L, Yang M, Xie B, He S, Liu Z. The Pepper Mitogen-Activated Protein Kinase CaMAPK7 Acts as a Positive Regulator in Response to Ralstonia solanacearum Infection. Front Microbiol 2021; 12:664926. [PMID: 34295316 PMCID: PMC8290481 DOI: 10.3389/fmicb.2021.664926] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Accepted: 06/07/2021] [Indexed: 11/13/2022] Open
Abstract
Mitogen-activated protein kinase (MAPK) pathways play a vital role in multiple plant processes, including growth, development, and stress signaling, but their involvement in response to Ralstonia solanacearum is poorly understood, particularly in pepper plants. Herein, CaMAPK7 was identified from the pepper genome and functionally analyzed. The accumulations of CaMAPK7 transcripts and promoter activities were both significantly induced in response to R. solanacearum strain FJC100301 infection, and exogenously applied phytohormones, including methyl jasmonate (MeJA), brassinolide (BR), salicylic acid (SA), and ethephon (ETN), were decreased by abscisic acid (ABA) treatment. Virus-induced gene silencing (VIGS) of CaMAPK7 significantly enhanced the susceptibility of pepper plants to infection by R. solanacearum and downregulated the defense-related marker genes, including CaDEF1, CaPO2, CaSAR82A, and CaWRKY40. In contrast, the ectopic overexpression of CaMAPK7 in transgenic tobacco enhanced resistance to R. solanacearum and upregulated the defense-associated marker genes, including NtHSR201, NtHSR203, NtPR4, PR1a/c, NtPR1b, NtCAT1, and NtACC. Furthermore, transient overexpression of CaMAPK7 in pepper leaves triggered intensive hypersensitive response (HR)-like cell death, H2O2 accumulation, and enriched CaWRKY40 at the promoters of its target genes and drove their transcript accumulations, including CaDEF1, CaPO2, and CaSAR82A. Taken together, these data indicate that R. solanacearum infection induced the expression of CaMAPK7, which indirectly modifies the binding of CaWRKY40 to its downstream targets, including CaDEF1, CaPO2, and CaSAR82A, ultimately leading to the activation of pepper immunity against R. solanacearum. The protein that responds to CaMAPK7 in pepper plants should be isolated in the future to build a signaling bridge between CaMAPK7 and CaWRKY40.
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Affiliation(s)
- Lanping Shi
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Kan Zhang
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Linjing Xie
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Mingxing Yang
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Baixue Xie
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Shuilin He
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zhiqin Liu
- Fujian Provincial Key Laboratory of Applied Genetics, Fujian Agriculture and Forestry University, Fuzhou, China.,College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
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15
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Gao S, Li N, Niran J, Wang F, Yin Y, Yu C, Jiao C, Yang C, Yao M. Transcriptome profiling of Capsicum annuum using Illumina- and PacBio SMRT-based RNA-Seq for in-depth understanding of genes involved in trichome formation. Sci Rep 2021; 11:10164. [PMID: 33986344 PMCID: PMC8119447 DOI: 10.1038/s41598-021-89619-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 04/26/2021] [Indexed: 11/16/2022] Open
Abstract
Trichomes, specialized epidermal cells located in aerial parts of plants, play indispensable roles in resisting abiotic and biotic stresses. However, the regulatory genes essential for multicellular trichrome development in Capsicum annuum L. (pepper) remain unclear. In this study, the transcript profiles of peppers GZZY-23 (hairy) and PI246331 (hairless) were investigated to gain insights into the genes responsible for the formation of multicellular trichomes. A total of 40,079 genes, including 4743 novel genes and 13,568 differentially expressed genes (DEGs), were obtained. Functional enrichment analysis revealed that the most noticeable pathways were transcription factor activity, sequence-specific DNA binding, and plant hormone signal transduction, which might be critical for multicellular trichome formation in hairy plants. We screened 11 DEGs related to trichome development; 151 DEGs involved in plant hormone signal transduction; 312 DEGs belonging to the MYB, bHLH, HD-Zip, and zinc finger transcription factor families; and 1629 DEGs predicted as plant resistance genes (PRGs). Most of these DEGs were highly expressed in GZZY-23 or trichomes. Several homologs of trichome regulators, such as SlCycB2, SlCycB3, and H, were considerably upregulated in GZZY-23, especially in the trichomes. The transcriptomic data generated in this study provide a basis for future characterization of trichome formation in pepper.
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Affiliation(s)
- Shenghua Gao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China
| | - Ning Li
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China
| | | | - Fei Wang
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China
| | - Yanxu Yin
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China
| | - Chuying Yu
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China
| | - Chunhai Jiao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China.
| | - Changxian Yang
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
| | - Minghua Yao
- Hubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Cash Crops Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, 430070, Hubei, China.
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16
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Murphy JF, Hallmark HT, Ramaraj T, Sundararajan A, Schilkey F, Rashotte AM. Three Strains of Tobacco etch virus Distinctly Alter the Transcriptome of Apical Stem Tissue in Capsicum annuum during Infection. Viruses 2021; 13:v13050741. [PMID: 33922755 PMCID: PMC8145408 DOI: 10.3390/v13050741] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 04/12/2021] [Accepted: 04/20/2021] [Indexed: 11/16/2022] Open
Abstract
Tobacco etch virus (TEV; genus Potyvirus) is flexuous rod shaped with a single molecule of single-stranded RNA and causes serious yield losses in species in the Solanaceae. Three TEV strains (HAT, Mex21, and N) are genetically distinct and cause different disease symptoms in plants. Here, a transcriptomic RNA sequencing approach was taken for each TEV strain to evaluate gene expression of the apical stem segment of pepper plants during two stages of disease development. Distinct profiles of Differentially Expressed Genes (DEGs) were identified for each TEV strain. DEG numbers increased with degree of symptom severity: 24 from HAT, 1190 from Mex21, and 4010 from N. At 7 days post-inoculation (dpi), when systemic symptoms were similar, there were few DEGs for HAT- and Mex21-infected plants, whereas N-infected plants had 2516 DEGs. DEG patterns from 7 to 14 dpi corresponded to severity of disease symptoms: milder disease with smaller DEG changes for HAT and Mex21 and severe disease with larger DEG changes for N. Strikingly, in each of these comparisons, there are very few overlapping DEGs among the TEV strains, including no overlapping DEGs between all three strains at 7 or 14 dpi.
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Affiliation(s)
- John F. Murphy
- Department of Entomology & Plant Pathology, Auburn University, Auburn, AL 36849, USA
- Correspondence:
| | - H. Tucker Hallmark
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA; (H.T.H.); (A.M.R.)
| | - Thiruvarangan Ramaraj
- National Center for Genome Resources, Santa Fe, NM 87505, USA; (T.R.); (A.S.); (F.S.)
- School of Computing, College of Computing & Digital Media, DePaul University, Chicago, IL 60604, USA
| | - Anitha Sundararajan
- National Center for Genome Resources, Santa Fe, NM 87505, USA; (T.R.); (A.S.); (F.S.)
| | - Faye Schilkey
- National Center for Genome Resources, Santa Fe, NM 87505, USA; (T.R.); (A.S.); (F.S.)
| | - Aaron M. Rashotte
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA; (H.T.H.); (A.M.R.)
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17
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López-Serrano L, Calatayud Á, López-Galarza S, Serrano R, Bueso E. Uncovering salt tolerance mechanisms in pepper plants: a physiological and transcriptomic approach. BMC PLANT BIOLOGY 2021; 21:169. [PMID: 33832439 PMCID: PMC8028838 DOI: 10.1186/s12870-021-02938-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 03/25/2021] [Indexed: 05/08/2023]
Abstract
BACKGROUND Pepper is one of the most cultivated crops worldwide, but is sensitive to salinity. This sensitivity is dependent on varieties and our knowledge about how they can face such stress is limited, mainly according to a molecular point of view. This is the main reason why we decided to develop this transcriptomic analysis. Tolerant and sensitive accessions, respectively called A25 and A6, were grown for 14 days under control conditions and irrigated with 70 mM of NaCl. Biomass, different physiological parameters and differentially expressed genes were analysed to give response to differential salinity mechanisms between both accessions. RESULTS The genetic changes found between the accessions under both control and stress conditions could explain the physiological behaviour in A25 by the decrease of osmotic potential that could be due mainly to an increase in potassium and proline accumulation, improved growth (e.g. expansins), more efficient starch accumulation (e.g. BAM1), ion homeostasis (e.g. CBL9, HAI3, BASS1), photosynthetic protection (e.g. FIB1A, TIL, JAR1) and antioxidant activity (e.g. PSDS3, SnRK2.10). In addition, misregulation of ABA signalling (e.g. HAB1, ERD4, HAI3) and other stress signalling genes (e.g. JAR1) would appear crucial to explain the different sensitivity to NaCl in both accessions. CONCLUSIONS After analysing the physiological behaviour and transcriptomic results, we have concluded that A25 accession utilizes different strategies to cope better salt stress, being ABA-signalling a pivotal point of regulation. However, other strategies, such as the decrease in osmotic potential to preserve water status in leaves seem to be important to explain the defence response to salinity in pepper A25 plants.
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Affiliation(s)
- Lidia López-Serrano
- Centro de Citricultura y Producción Vegetal, Departamento de Horticultura, Instituto Valenciano de Investigaciones Agrarias, CV-315, Km 10,700 Moncada, Valencia, Spain
| | - Ángeles Calatayud
- Centro de Citricultura y Producción Vegetal, Departamento de Horticultura, Instituto Valenciano de Investigaciones Agrarias, CV-315, Km 10,700 Moncada, Valencia, Spain
| | - Salvador López-Galarza
- Departamento de Producción Vegetal, Universitat Politècnica de València, Valencia, Spain
| | - Ramón Serrano
- Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-C.S.I.C, Camino de Vera s/n, 46022, Valencia, Spain
| | - Eduardo Bueso
- Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-C.S.I.C, Camino de Vera s/n, 46022, Valencia, Spain.
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18
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Dou L, Sun Y, Li S, Ge C, Shen Q, Li H, Wang W, Mao J, Xiao G, Pang C. Transcriptomic analyses show that 24-epibrassinolide (EBR) promotes cold tolerance in cotton seedlings. PLoS One 2021; 16:e0245070. [PMID: 33524020 PMCID: PMC7850480 DOI: 10.1371/journal.pone.0245070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 12/21/2020] [Indexed: 11/19/2022] Open
Abstract
In plants, brassinosteroids (BRs) are a class of steroidal hormones that are involved in numerous physiological responses. However, the function of BRs in cold tolerance in cotton has not been explored. In this study, cotton seedlings were treated with five concentrations (0, 0.05, 0.1, 0.2, 0.5 and 1.0 mg/L) of 24-Epibrassinolide (EBR) at 4°C. We measured the electrolyte leakage, malondialdehyde (MDA) content, proline content, and net photosynthesis rate (Pn) of the seedlings, which showed that EBR treatment increased cold tolerance in cotton in a dose-dependent manner, and that 0.2 mg/L is an optimum concentration for enhancing cold tolerance. The function of EBR in cotton cotyledons was investigated in the control 0 mg/L (Cold+water) and 0.2 mg/L (Cold+EBR) treatments using RNA-Seq. A total of 4,001 differentially expressed genes (DEGs), including 2,591 up-regulated genes and 1,409 down-regulated genes were identified. Gene Ontology (GO) and biochemical pathway enrichment analyses showed that EBR is involved in the genetic information process, secondary metabolism, and also inhibits abscisic acid (ABA) and ethylene (ETH) signal transduction. In this study, physiological experiments showed that EBR can increase cold tolerance in cotton seedlings, and the comprehensive RNA-seq data shed light on the mechanisms through which EBR increases cold tolerance in cotton seedlings.
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Affiliation(s)
- Lingling Dou
- School of Chemistry and Chemical Engineering, Xianyang Normal University, Xianyang, Shaanxi, China
| | - Yaru Sun
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, Henan, China
| | - Shuye Li
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, China
| | - Changwei Ge
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, China
| | - Qian Shen
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, China
| | - Huaizhu Li
- School of Chemistry and Chemical Engineering, Xianyang Normal University, Xianyang, Shaanxi, China
| | - Wenbo Wang
- School of Chemistry and Chemical Engineering, Xianyang Normal University, Xianyang, Shaanxi, China
| | - Jiayi Mao
- College of Life Sciences, Shaanxi Normal University, Xi’an, China
| | - Guanghui Xiao
- College of Life Sciences, Shaanxi Normal University, Xi’an, China
- * E-mail: (GX); (CP)
| | - Chaoyou Pang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, China
- * E-mail: (GX); (CP)
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19
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Yang S, Zhang Z, Chen W, Li X, Zhou S, Liang C, Li X, Yang B, Zou X, Liu F, Ou L, Ma Y. Integration of mRNA and miRNA profiling reveals the heterosis of three hybrid combinations of Capsicum annuum varieties. GM CROPS & FOOD 2021; 12:224-241. [PMID: 33410724 PMCID: PMC7808418 DOI: 10.1080/21645698.2020.1852064] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Capsicum annuum is also known as chili which is one of the most important vegetable crops grown in the world. Breeding new varieties with heterosis could improve the quality of pepper, increase yield, growth potential, disease resistance, adaptability, and seed viability. To investigate the heterosis among three cross combinations of different parents, the mRNA-miRNA integrated analysis was performed. A total number of 22,659,009 to 36,423,818 clean data were generated from mRNA-seq with 81 libraries, and the unique mapped reads were from 35,495,567 (86.81%) to 46,466,622 (88.95%). The plant-hormone signal transduction pathway (40 genes) was detected with a higher DEG number. The SAUR32L, GID1, PYR1, EIN2. ERF1, PR1, JAR1-like, IAA from this pathway play a key role in plant development. From the miRNA-seq, the number of clean reads was ranging from 12,132,221 to 25,632,680. A total of 220 miRNAs were predicted in this study, and all of them were identified as novel miRNA. The top three candidate KEGG pathways of miRNA were ribosome signaling pathway (13 miRNAs), spliceosome pathway (13 miRNAs), and plant hormone signal transduction pathways (10 miRNAs). With the mRNA and miRNA integrated analysis, we found some key genes were regulated by some miRNAs. Among them, the scarecrow-like 6 protein can be up or down regulated by mir8, mir120, mir184, mir_214, mir125, and mir130. The function of Della protein was regulated by mir24, mir74, mir94, mir139, and mir190. This study contributes to understanding how heterosis regulates the traits, such as crop production, fruit weight, and fruit length.
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Affiliation(s)
- Sha Yang
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China.,College of Horticulture, Key Laboratory for Vegetable Biology of Hunan Province, Hunan Agricultural University , Changsha, Hunan, China
| | - Zhuqing Zhang
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Wenchao Chen
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Xuefeng Li
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Shudong Zhou
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Chengliang Liang
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Xin Li
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Bozhi Yang
- College of Horticulture, Key Laboratory for Vegetable Biology of Hunan Province, Hunan Agricultural University , Changsha, Hunan, China
| | - Xuexiao Zou
- College of Horticulture, Key Laboratory for Vegetable Biology of Hunan Province, Hunan Agricultural University , Changsha, Hunan, China
| | - Feng Liu
- Institution of Vegetable Research, Hunan Academy of Agricultural Science , Changsha, Hunan, China
| | - Lijun Ou
- College of Horticulture, Key Laboratory for Vegetable Biology of Hunan Province, Hunan Agricultural University , Changsha, Hunan, China
| | - Yanqing Ma
- Department of Agriculture and Rural Affairs of Hunan Province, Changsha Hunan, China
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20
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Zheng T, Dong T, Haider MS, Jin H, Jia H, Fang J. Brassinosteroid Regulates 3-Hydroxy-3-methylglutaryl CoA Reductase to Promote Grape Fruit Development. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:11987-11996. [PMID: 33059448 DOI: 10.1021/acs.jafc.0c04466] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Brassinosteroids (BRs) are known to regulate plant growth and development. However, only little is known about their mechanism in the regulation of berry development in grapes. This study demonstrates that BR treatment enhances the accumulation of fruit sugar components, reduces the content of organic acids (e.g., tartaric acid), promotes coloration, and increases the anthocyanin content in grape berries at the onset of the veraison, half veraison, and full veraison stages at the rate of 0.0998, 0.0560, and 0.0281 mg·g-1, respectively. In addition, BR treatment was also found to accelerate the biosynthesis of terpenoid aroma components, such as α-pinene, d-limonene, and γ-terpinene, which influence the aromatic composition of grapes. BRs can negatively regulate the expression of VvHMGR, a key gene involved in the mevalonate (MVA) pathway, and reduce the activity of 3-hydroxy-3-methylglutaryl CoA reductase (HMGR). Inhibiting the expression of HMGR promoted the accumulation of anthocyanins and fruit coloration. Meanwhile, after the inhibition, the contents of auxin indole-3-acetic acid (IAA), abscisic acid (ABA), and brassinosteroid (BR) increased, while gibberellin (GA3) and zeatin riboside (ZR) decreased, and its aromatic composition also changed. Therefore, it may be concluded that BRs inhibited HMGR activity and cooperated with VvHMGR to regulate the formation of color, aroma, and other quality characteristics in fruits.
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Affiliation(s)
- Ting Zheng
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Tianyu Dong
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Muhammad S Haider
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Huanchun Jin
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Haifeng Jia
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- China Wine Industry Technology Institute, Yinchuan 750000, China
| | - Jinggui Fang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- China Wine Industry Technology Institute, Yinchuan 750000, China
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21
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Zhang Y, Chen M, Siemiatkowska B, Toleco MR, Jing Y, Strotmann V, Zhang J, Stahl Y, Fernie AR. A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species. PLANT COMMUNICATIONS 2020; 1:100028. [PMID: 33367253 PMCID: PMC7747990 DOI: 10.1016/j.xplc.2020.100028] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Revised: 10/08/2019] [Accepted: 02/03/2020] [Indexed: 05/08/2023]
Abstract
Although the use of stable transformation technology has led to great insight into gene function, its application in high-throughput studies remains arduous. Agro-infiltration have been widely used in species such as Nicotiana benthamiana for the rapid detection of gene expression and protein interaction analysis, but this technique does not work efficiently in other plant species, including Arabidopsis thaliana. As an efficient high-throughput transient expression system is currently lacking in the model plant species A. thaliana, we developed a method that is characterized by high efficiency, reproducibility, and suitability for transient expression of a variety of functional proteins in A. thaliana and 7 other plant species, including Brassica oleracea, Capsella rubella, Thellungiella salsuginea, Thellungiella halophila, Solanum tuberosum, Capsicum annuum, and N. benthamiana. Efficiency of this method was independently verified in three independent research facilities, pointing to the robustness of this technique. Furthermore, in addition to demonstrating the utility of this technique in a range of species, we also present a case study employing this method to assess protein-protein interactions in the sucrose biosynthesis pathway in Arabidopsis.
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Affiliation(s)
- Youjun Zhang
- Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Moxian Chen
- Department of Biology, Hong Kong Baptist University, and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Beata Siemiatkowska
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Mitchell Rey Toleco
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Yue Jing
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Vivien Strotmann
- Institute for Developmental Genetics, Heinrich Heine University, Düsseldorf, Germany
| | - Jianghua Zhang
- Department of Biology, Hong Kong Baptist University, and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Yvonne Stahl
- Institute for Developmental Genetics, Heinrich Heine University, Düsseldorf, Germany
| | - Alisdair R. Fernie
- Center of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
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22
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Huang Y, Yue C, Xiang J, Han Y, Wang J, Wang L, Sun L. Gene expression profile indicates involvement of uniconazole in Coix lachryma-jobi L. seedlings at low temperature. Food Sci Nutr 2020; 8:534-546. [PMID: 31993177 PMCID: PMC6977508 DOI: 10.1002/fsn3.1338] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 11/13/2019] [Accepted: 11/18/2019] [Indexed: 01/01/2023] Open
Abstract
Uniconazole (UNZ) can alleviate a variety of abiotic stresses such as low temperature. With application of UNZ on Coix lachryma-jobi L. (coix) under low-temperature stress, growth and physiological parameters were investigated in seedlings. Meanwhile, transcriptome profile in coix seedlings was characterized as well. The results showed an increase of 11.90%, 13.59%, and 10.98% in stem diameter, the aboveground and belowground biomass in 5 mg/L uniconazole application group (U3), compared with control check low-temperature group (CKL). Some anti-oxidase activities also show significant difference between CKL and U3 (p < .05). Transcriptome results showed that 3,901 and 1,040 genes had different expression level at control check (CK) and CKL, CKL and U3. A considerable number of different expressing genes (DEGs) related to the plant hormone signal transduction, photosynthesis, reactive oxygen species (ROS)-related genes, and secondary metabolism in response to uniconazole application were identified in this study. The transcriptomic gene expression profiles present a valuable genomic tool to improve studying the molecular mechanisms underlying low-temperature tolerance in coix. At the same time, it would provide a certain basis for the application of UNZ in the production of coix resistance under low temperature.
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Affiliation(s)
- Yulan Huang
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Caijun Yue
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Junliang Xiang
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Yiqiang Han
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Jingwei Wang
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Liyan Wang
- College of Life Science and TechnologyHeilongjiang Bayi Agricultural UniversityDaqingChina
| | - Lifang Sun
- College of AgronomyHeilongjiang Bayi Agricultural UniversityDaqingChina
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23
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Zhao M, Yuan L, Wang J, Xie S, Zheng Y, Nie L, Zhu S, Hou J, Chen G, Wang C. Transcriptome analysis reveals a positive effect of brassinosteroids on the photosynthetic capacity of wucai under low temperature. BMC Genomics 2019; 20:810. [PMID: 31694527 PMCID: PMC6836548 DOI: 10.1186/s12864-019-6191-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 10/15/2019] [Indexed: 01/05/2023] Open
Abstract
Background Brassinosteroids (BRs) have a positive effect on many processes during plant growth and development, and in response to various abiotic stressors. Low-temperature (LT) stress constricts the geographic distribution, growth, and development of wucai (Brassica campestris L. ssp. chinensis var. rosularis Tsen). However, there is little information on the global gene expression of BRs under LT stress in wucai. In this study, the molecular roles of 24-epibrassinolide (EBR) after exogenously application, were explored by RNA sequencing under LT conditions. Results According to the Gene Ontology (GO) term and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, photosynthesis was significantly enriched after spraying EBR under LT. The transcripts encoding the photosystem II (PSII) oxygen-evolving enhancer protein, photosystem I (PSI) subunit, light-harvesting chlorophyll protein complexes I and II, and ferredoxin were up-regulated after the application of EBR. Transcripts encoding several key enzymes involved in chlorophyll biosynthesis were also up-regulated, accompanied by significant differences in the contents of 5-aminolevulinic acid (ALA), porphobilinogen (PBG), protoporphyrin IX (Proto IX), Mg-protoporphyrin IX (Mg-proto IX), protochlorophyllide (Pchl), and photosynthetic pigments. Notably, transcriptional and physiological analyses revealed that under LT stress, plant responses to EBR involved a major reorientation of photosynthesis, as well as porphyrin and chlorophyll metabolism. Conclusion This study explored the role of EBR as an LT stress tolerance mechanism in wucai. At the transcription level, LT tolerance manifests as an enhancement of photosynthesis, and the amelioration of porphyrin and chlorophyll metabolism.
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Affiliation(s)
- Mengru Zhao
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China
| | - Lingyun Yuan
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China.,Wanjiang Vegetable Industrial Technology Institute, Maanshan, 238200, Anhui, China
| | - Jie Wang
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China
| | - Shilei Xie
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China
| | - Yushan Zheng
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China
| | - Libing Nie
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China
| | - Shidong Zhu
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China.,Wanjiang Vegetable Industrial Technology Institute, Maanshan, 238200, Anhui, China
| | - Jinfeng Hou
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China.,Wanjiang Vegetable Industrial Technology Institute, Maanshan, 238200, Anhui, China
| | - Guohu Chen
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China.,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China.,Wanjiang Vegetable Industrial Technology Institute, Maanshan, 238200, Anhui, China
| | - Chenggang Wang
- College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, Hefei, 230036, Anhui, China. .,Provincial Engineering Laboratory for Horticultural Crop Breeding of Anhui, 130 West of Changjiang Road, Hefei, 230036, Anhui, China. .,Wanjiang Vegetable Industrial Technology Institute, Maanshan, 238200, Anhui, China.
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24
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Rathi D, Gayali S, Pareek A, Chakraborty S, Chakraborty N. Transcriptome profiling illustrates expression signatures of dehydration tolerance in developing grasspea seedlings. PLANTA 2019; 250:839-855. [PMID: 30627890 DOI: 10.1007/s00425-018-03082-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Accepted: 12/21/2018] [Indexed: 06/09/2023]
Abstract
This study highlights dehydration-mediated temporal changes in physicochemical, transcriptome and metabolome profiles indicating altered gene expression and metabolic shifts, underlying endurance and adaptation to stress tolerance in the marginalized crop, grasspea. Grasspea, often regarded as an orphan legume, is recognized to be fairly tolerant to water-deficit stress. In the present study, 3-week-old grasspea seedlings were subjected to dehydration by withholding water over a period of 144 h. While there were no detectable phenotypic changes in the seedlings till 48 h, the symptoms appeared during 72 h and aggravated upon prolonged dehydration. The physiological responses to water-deficit stress during 72-96 h displayed a decrease in pigments, disruption in membrane integrity and osmotic imbalance. We evaluated the temporal effects of dehydration at the transcriptome and metabolome levels. In total, 5201 genes of various functional classes including transcription factors, cytoplasmic enzymes and structural cell wall proteins, among others, were found to be dehydration-responsive. Further, metabolome profiling revealed 59 dehydration-responsive metabolites including sugar alcohols and amino acids. Despite the lack of genome information of grasspea, the time course of physicochemical and molecular responses suggest a synchronized dehydration response. The cross-species comparison of the transcriptomes and metabolomes with other legumes provides evidence for marked molecular diversity. We propose a hypothetical model that highlights novel biomarkers and explain their relevance in dehydration-response, which would facilitate targeted breeding and aid in commencing crop improvement efforts.
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Affiliation(s)
- Divya Rathi
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Saurabh Gayali
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Akanksha Pareek
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Subhra Chakraborty
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Niranjan Chakraborty
- National Institute of Plant Genome Research, Jawaharlal Nehru University Campus, Aruna Asaf Ali Marg, New Delhi, 110067, India.
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25
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Zheng J, Liu F, Zhu C, Li X, Dai X, Yang B, Zou X, Ma Y. Identification, expression, alternative splicing and functional analysis of pepper WRKY gene family in response to biotic and abiotic stresses. PLoS One 2019; 14:e0219775. [PMID: 31329624 PMCID: PMC6645504 DOI: 10.1371/journal.pone.0219775] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 07/01/2019] [Indexed: 11/18/2022] Open
Abstract
WRKY proteins are a large group of plant transcription factors that are involved in various biological processes, including biotic and abiotic stress responses, hormone response, plant development, and metabolism. WRKY proteins have been identified in several plants, but only a few have been identified in Capsicum annuum. Here, we identified a total of 62 WRKY genes in the latest pepper genome. These genes were classified into three groups (Groups 1–3) based on the structural features of their proteins. The structures of the encoded proteins, evolution, and expression under normal growth conditions were analyzed and 35 putative miRNA target sites were predicted in 20 CaWRKY genes. Moreover, the response to cold or CMV treatments of selected WRKY genes were examined to validate the roles under stresses. And alternative splicing (AS) events of some CaWRKYs were also identified under CMV infection. Promoter analysis confirmed that CaWRKY genes are involved in growth, development, and biotic or abiotic stress responses in hot pepper. The comprehensive analysis provides fundamental information for better understanding of the signaling pathways involved in the WRKY-mediated regulation of developmental processes, as well as biotic and abiotic stress responses.
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Affiliation(s)
- Jingyuan Zheng
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Feng Liu
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Chunhui Zhu
- Institute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Xuefeng Li
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Xiongze Dai
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Bozhi Yang
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Xuexiao Zou
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Yanqing Ma
- Institute of Vegetable Research, Hunan Academy of Agricultural Sciences, Changsha, China
- * E-mail:
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26
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Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis. Int J Mol Sci 2019; 20:ijms20133321. [PMID: 31284545 PMCID: PMC6651063 DOI: 10.3390/ijms20133321] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 06/30/2019] [Accepted: 07/04/2019] [Indexed: 01/08/2023] Open
Abstract
Radish is a crucial vegetable crop of the Brassicaceae family with many varieties and large cultivated area in China. Radish is a cool season crop, and there are only a few heat tolerant radish varieties in practical production with little information concerning the related genes in response to heat stress. In this work, some physiological parameter changes of young leaves under short-term heat stress were detected. Furthermore, we acquired 1802 differentially expressed mRNAs (including encoding some heat shock proteins, heat shock factor and heat shock-related transcription factors), 169 differentially expressed lncRNAs and three differentially expressed circRNAs (novel_circ_0000265, novel_circ_0000325 and novel_circ_0000315) through strand-specific RNA sequencing technology. We also found 10 differentially expressed miRNAs (ath-miR159b-3p, athmiR159c, ath-miR398a-3p, athmiR398b-3p, ath-miR165a-5p, ath-miR169g-3p, novel_86, novel_107, novel_21 and ath-miR171b-3p) by small RNA sequencing technology. Through function prediction and enrichment analysis, our results suggested that the significantly possible pathways/complexes related to heat stress in radish leaves were circadian rhythm-plant, photosynthesis-antenna proteins, photosynthesis, carbon fixation in photosynthetic organisms, arginine and proline metabolism, oxidative phosphorylation, peroxisome and plant hormone signal transduction. Besides, we identified one lncRNA-miRNA-mRNAs combination responsive to heat stress. These results will be helpful for further illustration of molecular regulation networks of how radish responds to heat stress.
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27
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Anwar A, Li Y, He C, Yu X. 24-Epibrassinolide promotes NO 3- and NH 4+ ion flux rate and NRT1 gene expression in cucumber under suboptimal root zone temperature. BMC PLANT BIOLOGY 2019; 19:225. [PMID: 31146677 PMCID: PMC6543628 DOI: 10.1186/s12870-019-1838-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 05/17/2019] [Indexed: 05/19/2023]
Abstract
BACKGROUND Suboptimal root zone temperature (RZT) causes a remarkable reduction in growth of horticultural crops during winter cultivation under greenhouse production. However, limited information is available on the effects of suboptimal RZT on nitrogen (N) metabolism in cucumber seedlings. The aim of this study is to investigate the effects of 24-Epibrassinolide (EBR) on nitrate and ammonium flux rate, N metabolism, and transcript levels of NRT1 family genes under suboptimal RZT in cucumber seedlings. RESULTS Suboptimal RZT (LT) negatively affected on cucumber growth and proportionately decreased EBR contents, bleeding rate, root activity, enzyme activities of nitrate reductase (NR), nitrite reductase (NiR), glutamine synthetase (GS), and glutamate synthase (GOGAT), nitrate (NO3-) influx rate, ammonium (NH4+) efflux rate, and transcript levels of nitrate transporter (NRT1) encoding genes. However, exogenous EBR reduced the harmful effects of suboptimal RZT and increased endogenous EBR contents, bleeding rate, root activity, enzyme activities of NR, NiR, GS, and GOGAT, NH4+ and NO3- flux rates and contents, and N accumulation. EBR-treated seedlings also upregulated the transcript levels of nitrate transporters CsNRT1.1, CsNRT1.2A, CsNRT1.2B, CsNRT1.2C, CsNRT1.3, CsNRT1.4A, CsNRT1.5B, CsNRT1.5C, CsNRT1.9, and CsNRT1.10, and downregulated CsNRT1.5A and CsNRT1.8. LT treatment upregulated the expression level of CsNRT1.5A, while exogenous BZR application downregulated the expression level of NRT1 genes. CONCLUSION These results indicate that exogenous application of EBR alleviated the harmful effects of suboptimal RZT through changes in N metabolism, NH4+ and NO3- flux rates, and NRT1 gene expression, leading to improved cucumber seedlings growth. Our study provides the first evidence of the role of EBR in the response to suboptimal RZT in cucumber, and can be used to improve vegetable production.
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Affiliation(s)
- Ali Anwar
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Scieces, Beijing, China
| | - Yansu Li
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Scieces, Beijing, China
| | - Chaoxing He
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Scieces, Beijing, China
| | - Xianchang Yu
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Scieces, Beijing, China
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28
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Anwar A, Liu Y, Dong R, Bai L, Yu X, Li Y. The physiological and molecular mechanism of brassinosteroid in response to stress: a review. Biol Res 2018; 51:46. [PMID: 30419959 PMCID: PMC6231256 DOI: 10.1186/s40659-018-0195-2] [Citation(s) in RCA: 94] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 10/31/2018] [Indexed: 11/10/2022] Open
Abstract
The negative effects of environmental stresses, such as low temperature, high temperature, salinity, drought, heavy metal stress, and biotic stress significantly decrease crop productivity. Plant hormones are currently being used to induce stress tolerance in a variety of plants. Brassinosteroids (commonly known as BR) are a group of phytohormones that regulate a wide range of biological processes that lead to tolerance of various stresses in plants. BR stimulate BRASSINAZOLE RESISTANCE 1 (BZR1)/BRI1-EMS SUPPRESSOR 1 (BES1), transcription factors that activate thousands of BR-targeted genes. BR regulate antioxidant enzyme activities, chlorophyll contents, photosynthetic capacity, and carbohydrate metabolism to increase plant growth under stress. Mutants with BR defects have shortened root and shoot developments. Exogenous BR application increases the biosynthesis of endogenous hormones such as indole-3-acetic acid, abscisic acid, jasmonic acid, zeatin riboside, brassinosteroids (BR), and isopentenyl adenosine, and gibberellin (GA) and regulates signal transduction pathways to stimulate stress tolerance. This review will describe advancements in knowledge of BR and their roles in response to different stress conditions in plants.
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Affiliation(s)
- Ali Anwar
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yumei Liu
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.,College of Agricultural and Biological Engineering, Heze University, Heze, 274015, China
| | - Rongrong Dong
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Longqiang Bai
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xianchang Yu
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Yansu Li
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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29
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Anwar A, Bai L, Miao L, Liu Y, Li S, Yu X, Li Y. 24-Epibrassinolide Ameliorates Endogenous Hormone Levels to Enhance Low-Temperature Stress Tolerance in Cucumber Seedlings. Int J Mol Sci 2018; 19:ijms19092497. [PMID: 30149495 PMCID: PMC6164164 DOI: 10.3390/ijms19092497] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 08/05/2018] [Accepted: 08/07/2018] [Indexed: 11/24/2022] Open
Abstract
Phytohormone biosynthesis and accumulation are essential for plant growth and development and stress responses. Here, we investigated the effects of 24-epibrassinolide (EBR) on physiological and biochemical mechanisms in cucumber leaves under low-temperature stress. The cucumber seedlings were exposed to treatments as follows: NT (normal temperature, 26 °C/18 °C day/night), and three low-temperature (12 °C/8 °C day/night) treatments: CK (low-temperature stress); EBR (low-temperature and 0.1 μM EBR); and BZR (low-temperature and 4 μM BZR, a specific EBR biosynthesis inhibitor). The results indicated that low-temperature stress proportionately decreased cucumber seedling growth and the strong seedling index, chlorophyll (Chl) content, photosynthetic capacity, and antioxidant enzyme activities, while increasing reactive oxygen species (ROS) and malondialdehyde (MDA) contents, hormone levels, and EBR biosynthesis gene expression level. However, EBR treatments significantly enhanced cucumber seedling growth and the strong seedling index, chlorophyll content, photosynthetic capacity, activities of antioxidant enzymes, the cell membrane stability, and endogenous hormones, and upregulated EBR biosynthesis gene expression level, while decreasing ROS and the MDA content. Based on these results, it can be concluded that exogenous EBR regulates endogenous hormones by activating at the transcript level EBR biosynthetic genes, which increases antioxidant enzyme capacity levels and reduces the overproduction of ROS and MDA, protecting chlorophyll and photosynthetic machinery, thus improving cucumber seedling growth.
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Affiliation(s)
- Ali Anwar
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Longqiang Bai
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Li Miao
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Yumei Liu
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
- College of Agricultural and Biological Engineering, Heze University, Heze 274015, China.
| | - Shuzhen Li
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Xianchang Yu
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
| | - Yansu Li
- The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
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Analysis of the Coding and Non-Coding RNA Transcriptomes in Response to Bell Pepper Chilling. Int J Mol Sci 2018; 19:ijms19072001. [PMID: 29987249 PMCID: PMC6073856 DOI: 10.3390/ijms19072001] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Revised: 06/25/2018] [Accepted: 06/27/2018] [Indexed: 11/17/2022] Open
Abstract
Increasing evidence suggests that long non-coding RNAs (lncRNAs), circular RNAs (circRNAs), and microRNAs (miRNAs) have roles during biotic and abiotic stress, though their exact contributions remain unclear. To explore their biological functions in response to chilling in bell pepper, we examined their accumulation profiles by deep sequencing and identified 380 lncRNAs, 36 circRNAs, 18 miRNAs, and 4128 differentially expressed mRNAs in the chilled versus the non-chilled fruit. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses revealed differentially expressed genes and putative ncRNA targets, including transcription factors of multiple classes, such as myeloblastosis (MYB), basic helix-loop-helix (bHLH), and ethylene response factor (ERF) transcription factors (TFs), enzymes involved in bio-oxidation and oxidative phosphorylation (serine/threonine-protein kinase, polyphenol oxidase, catalase, peroxidase, lipoxygenase, and ATPase), and cell wall metabolism-related enzymes (beta-galactosidase, pectate lyase, pectinesterase, and polygalacturonase). On the basis of the accumulation profiles, a network of putatively interacting RNAs associated with bell pepper chilling was developed, which pointed to ncRNAs that could provide the foundation for further developing a more refined understanding of the molecular response to chilling injury.
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He Y, Li J, Ban Q, Han S, Rao J. Role of Brassinosteroids in Persimmon ( Diospyros kaki L.) Fruit Ripening. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:2637-2644. [PMID: 29509414 DOI: 10.1021/acs.jafc.7b06117] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Brassinosteroids (BRs) are phytohormones that regulate numerous processes including fruit ripening. In this study, persimmon ( Diospyros kaki L.) fruits were treated with 24-epibrassinolide (EBR) or brassinazole (Brz, a BR biosynthesis inhibitor) and then stored at ambient temperature. The results show that endogenous BR contents gradually increased during persimmon fruit ripening. EBR treatment significantly increased both the content of water-soluble pectin and the activities of polygalacturonase, pectate lyase, and endo-1,4-beta-glucanase but significantly reduced the content of acid-soluble pectin and cellulose, resulting in rapid fruit softening. The EBR treatment also promoted ethylene production and respiration rate. In contrast, Brz treatment delayed persimmon fruit ripening. qRT-PCR analysis showed that DkPG1, DkPL1, DkPE2, DkEGase1, DkACO2, DkACS1, and DkACS2 were up-regulated (especially a 38-fold increase in DkEGase1) in the fruit of the EBR-treated group. These results suggest that BRs are involved in persimmon fruit ripening by influencing cell-wall-degrading enzymes and ethylene biosynthesis.
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Affiliation(s)
- Yiheng He
- College of Horticulture , Northwest A&F University , Yangling , Shaanxi 712100 , China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology , Hangzhou 310058 , China
| | - Jiaying Li
- College of Horticulture , Northwest A&F University , Yangling , Shaanxi 712100 , China
| | - Qiuyan Ban
- College of Horticulture , Northwest A&F University , Yangling , Shaanxi 712100 , China
| | - Shoukun Han
- College of Horticulture , Northwest A&F University , Yangling , Shaanxi 712100 , China
| | - Jingping Rao
- College of Horticulture , Northwest A&F University , Yangling , Shaanxi 712100 , China
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32
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iTRAQ-Based Quantitative Proteomic Analysis Reveals Cold Responsive Proteins Involved in Leaf Senescence in Upland Cotton (Gossypium hirsutum L.). Int J Mol Sci 2017; 18:ijms18091984. [PMID: 28926933 PMCID: PMC5618633 DOI: 10.3390/ijms18091984] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2017] [Revised: 09/08/2017] [Accepted: 09/11/2017] [Indexed: 11/21/2022] Open
Abstract
Premature leaf senescence occurs in the ultimate phase of the plant, and it occurs through a complex series of actions regulated by stress, hormones and genes. In this study, a proteomic analysis was performed to analyze the factors that could induce premature leaf senescence in two cotton cultivars. We successfully identified 443 differential abundant proteins (DAPs) from 7388 high-confidence proteins at four stages between non-premature senescence (NS) and premature senescence (PS), among which 158 proteins were over-accumulated, 238 proteins were down-accumulated at four stages, and 47 proteins displayed overlapped accumulation. All the DAPs were mapped onto 21 different categories on the basis of a Clusters of Orthologous Groups (COG) analysis, and 9 clusters were based on accumulation. Gene Ontology (GO) enrichment results show that processes related to stress responses, including responses to cold temperatures and responses to hormones, are significantly differentially accumulated. More importantly, the enriched proteins were mapped in The Arabidopsis Information Resource (TAIR), showing that 58 proteins play an active role in abiotic stress, hormone signaling and leaf senescence. Among these proteins, 26 cold-responsive proteins (CRPs) are significantly differentially accumulated. The meteorological data showed that the median temperatures declined at approximately 15 days before the onset of aging, suggesting that a decrease in temperature is tightly linked to an onset of cotton leaf senescence. Because accumulations of H2O2 and increased jasmonic acid (JA) were detected during PS, we speculate that two pathways associated with JA and H2O2 are closely related to premature leaf senescence in cotton.
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