1
|
Ma J, Wang T, Wang H, Chen Y, Yang J, Xie T, Shan L. Discrepancy in coordination and variation of root and leaf traits among herbaceous and shrub species in the desert, China. FRONTIERS IN PLANT SCIENCE 2024; 15:1485542. [PMID: 39600905 PMCID: PMC11589817 DOI: 10.3389/fpls.2024.1485542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2024] [Accepted: 10/21/2024] [Indexed: 11/29/2024]
Abstract
Introduction Alterations in life forms could simultaneously influence the variability of fine root and leaf traits. However, our understanding of the organ-level coordination and patterns of variation in fine root and leaf traits among desert herbs and shrubs with distinct habits remains limited. Methods Consequently, this study examined the leaf and fine root traits of 9 shrubs and 9 herbs across three desert habitats through Sperman's correlation analysis, principal component analysis (PCA), and standardized major axis (SMA) analysis as a means of identifying the hub traits and the resource trade-off strategies employed by desert plants to adapt to their environment. Results The results showed that the extent of coordination between leaf and root traits, defined as similarity, was contingent upon the life form. While the traits in shrubs were completely decoupled, those in herbs exhibited a high degree of coordination. The traits related to water acquisition and storage are highly connected and do not depend on traits and life forms. Most leaves and fine roots were primarily loaded along the PC1 and PC2 axes of principal component analysis. Discussion Suggesting that herbs and shrubs each adopt the most advantageous trait syndrome in accordance with their life form to acquire and conserve resources. The leaf economic spectrum and the root economic spectrum evolved independently, showing no dependence on the variations in life form. In conclusion, in desert plants, leaf and root variations occur independently along two axes, with traits associated with water acquisition playing a neutral role in their ecological strategy.
Collapse
Affiliation(s)
- Jing Ma
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Taotao Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Hotan City, Cele, Xinjiang Uygur Autonomous Region, China
| | - Hongyong Wang
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Yiming Chen
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Jie Yang
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Tingting Xie
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Lishan Shan
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| |
Collapse
|
2
|
Tian H, Zhang H, Shi X, Ma W, Zhang J. Population genetic diversity and environmental adaptation of Tamarix hispida in the Tarim Basin, arid Northwestern China. Heredity (Edinb) 2024; 133:298-307. [PMID: 39138378 PMCID: PMC11528106 DOI: 10.1038/s41437-024-00714-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 08/06/2024] [Accepted: 08/06/2024] [Indexed: 08/15/2024] Open
Abstract
Arid ecosystems, characterized by severe water scarcity, play a crucial role in preserving Earth's biodiversity and resources. The Tarim Basin in Northwestern China, a typical arid region isolated by the Tianshan Mountains and expansive deserts, provides a special study area for investigating how plant response and adaptation to such environments. Tamarix hispida, a species well adapted to saline-alkaline and drought conditions, dominates in the saline-alkali lands of the Tarim Basin. This study aims to examine the genetic diversity and environmental adaptation of T. hispida in the Tarim Basin. Genomic SNPs for a total of 160 individuals from 17 populations were generated using dd-RAD sequencing approach. Population genetic structure and genetic diversity were analyzed by methods including ADMIXTURE, PCA, and phylogenetic tree. Environmental association analysis (EAA) was performed using LFMM and RDA analyses. The results revealed two major genetic lineages with geographical substitution patterns from west to east, indicating significant gene flow and hybridization. Environmental factors such as Precipitation Seasonality (bio15) and Topsoil Sand Fraction (T_SAND) significantly shaped allele frequencies, supporting the species' genetic adaptability. Several genes associated with environmental adaptation were identified and annotated, highlighting physiological and metabolic processes crucial for survival in arid conditions. The study highlights the role of geographical isolation and environmental factors in shaping genetic structure and adaptive evolution. The identified adaptive genes related to stress tolerance emphasize the species' resilience and highlight the importance of specific physiological and metabolic pathways.
Collapse
Affiliation(s)
- Haowen Tian
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China
- Xinjiang Key Laboratory of Conservation and Utilization of Gene Resources, Urumqi, Xinjiang, China
- Specimen Museum of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, Xinjiang, China
| | - Hongxiang Zhang
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China.
- Xinjiang Key Laboratory of Conservation and Utilization of Gene Resources, Urumqi, Xinjiang, China.
- Specimen Museum of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China.
| | - Xiaojun Shi
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life Sciences, Xinjiang Agricultural University, Urumqi, Xinjiang, China.
| | - Wenhui Ma
- College of Ecology and Environment, Xinjiang University, Urumqi, 830046, China
| | - Jian Zhang
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China
- Xinjiang Key Laboratory of Conservation and Utilization of Gene Resources, Urumqi, Xinjiang, China
- Specimen Museum of Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China
| |
Collapse
|
3
|
Tariq A, Graciano C, Sardans J, Zeng F, Hughes AC, Ahmed Z, Ullah A, Ali S, Gao Y, Peñuelas J. Plant root mechanisms and their effects on carbon and nutrient accumulation in desert ecosystems under changes in land use and climate. THE NEW PHYTOLOGIST 2024; 242:916-934. [PMID: 38482544 DOI: 10.1111/nph.19676] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 02/27/2024] [Indexed: 04/12/2024]
Abstract
Deserts represent key carbon reservoirs, yet as these systems are threatened this has implications for biodiversity and climate change. This review focuses on how these changes affect desert ecosystems, particularly plant root systems and their impact on carbon and mineral nutrient stocks. Desert plants have diverse root architectures shaped by water acquisition strategies, affecting plant biomass and overall carbon and nutrient stocks. Climate change can disrupt desert plant communities, with droughts impacting both shallow and deep-rooted plants as groundwater levels fluctuate. Vegetation management practices, like grazing, significantly influence plant communities, soil composition, root microorganisms, biomass, and nutrient stocks. Shallow-rooted plants are particularly susceptible to climate change and human interference. To safeguard desert ecosystems, understanding root architecture and deep soil layers is crucial. Implementing strategic management practices such as reducing grazing pressure, maintaining moderate harvesting levels, and adopting moderate fertilization can help preserve plant-soil systems. Employing socio-ecological approaches for community restoration enhances carbon and nutrient retention, limits desert expansion, and reduces CO2 emissions. This review underscores the importance of investigating belowground plant processes and their role in shaping desert landscapes, emphasizing the urgent need for a comprehensive understanding of desert ecosystems.
Collapse
Affiliation(s)
- Akash Tariq
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, 08193, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
| | - Corina Graciano
- Instituto de Fisiología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de La Plata, 1900, Buenos Aires, Argentina
| | - Jordi Sardans
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, 08193, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
| | - Fanjiang Zeng
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Alice C Hughes
- School of Biological Sciences, University of Hong Kong, Hong Kong, 852, China
| | - Zeeshan Ahmed
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Abd Ullah
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Sikandar Ali
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yanju Gao
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
- Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, 08193, Barcelona, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, 08193, Catalonia, Spain
| |
Collapse
|
4
|
Mohanta TK, Mohanta YK, Kaushik P, Kumar J. Physiology, genomics, and evolutionary aspects of desert plants. J Adv Res 2024; 58:63-78. [PMID: 37160225 PMCID: PMC10982872 DOI: 10.1016/j.jare.2023.04.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 04/28/2023] [Accepted: 04/29/2023] [Indexed: 05/11/2023] Open
Abstract
BACKGROUND Despite the exposure to arid environmental conditions across the globe ultimately hampering the sustainability of the living organism, few plant species are equipped with several unique genotypic, biochemical, and physiological features to counter such harsh conditions. Physiologically, they have evolved with reduced leaf size, spines, waxy cuticles, thick leaves, succulent hydrenchyma, sclerophyll, chloroembryo, and photosynthesis in nonfoliar and other parts. At the biochemical level, they are evolved to perform efficient photosynthesis through Crassulacean acid metabolism (CAM) and C4 pathways with the formation of oxaloacetic acid (Hatch-Slack pathway) instead of the C3 pathway. Additionally, comparative genomics with existing data provides ample evidence of the xerophytic plants' positive selection to adapt to the arid environment. However, adding more high-throughput sequencing of xerophyte plant species is further required for a comparative genomic study toward trait discovery related to survival. Learning from the mechanism to survive in harsh conditions could pave the way to engineer crops for future sustainable agriculture. AIM OF THE REVIEW The distinct physiology of desert plants allows them to survive in harsh environments. However, the genomic composition also contributes significantly to this and requires great attention. This review emphasizes the physiological and genomic adaptation of desert plants. Other important parameters, such as desert biodiversity and photosynthetic strategy, are also discussed with recent progress in the field. Overall, this review discusses the different features of desert plants, which prepares them for harsh conditions intending to translate knowledge to engineer plant species for sustainable agriculture. KEY SCIENTIFIC CONCEPTS OF REVIEW This review comprehensively presents the physiology, molecular mechanism, and genomics of desert plants aimed towards engineering a sustainable crop.
Collapse
Affiliation(s)
- Tapan Kumar Mohanta
- Natural and Medical Sciences Research Center, University of Nizwa, Nizwa 611, Oman.
| | - Yugal Kishore Mohanta
- Dept. of Applied Biology, University of Science and Technology Meghalaya, Baridua, Meghalaya 793101, India
| | - Prashant Kaushik
- Chaudhary Charan Singh Haryana Agricultural University, Hisar, Haryana, 125004, India
| | - Jitesh Kumar
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, United States
| |
Collapse
|
5
|
Deeb M, Smagin AV, Pauleit S, Fouché-Grobla O, Podwojewski P, Groffman PM. The urgency of building soils for Middle Eastern and North African countries: Economic, environmental, and health solutions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 917:170529. [PMID: 38296094 DOI: 10.1016/j.scitotenv.2024.170529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/22/2024] [Accepted: 01/26/2024] [Indexed: 02/08/2024]
Abstract
Soil degradation is a short or long ongoing process that limits ecosystem services. Intensive land use, water scarcity, land disturbance, and global climate change have reduced the quality of soils worldwide. This degradation directly threatens most of the land in the Middle East and North Africa, while the remaining areas are at high risk of further desertification. Rehabilitation and control of these damaged environments are essential to avoid negative effects on human well-being (e.g., poverty, food insecurity, wars, etc.). Here we review constructed soils involving the use of waste materials as a solution to soil degradation and present approaches to address erosion, organic matter oxidation, water scarcity and salinization. Our analysis showed a high potential for using constructed soil as a complimentary reclamation solution in addition to traditional ones. Constructed soils could have the ability to overcome the limitations of existing solutions to tackle land degradation while contributing to the solution of waste management problems. These soils facilitate the provision of multiple ecosystem services and have the potential to address particularly challenging land degradation problems in semi and dry climates.
Collapse
Affiliation(s)
- Maha Deeb
- Soils and Substrates, HEPIA, HES-SO University of Applied Sciences and Arts Western Switzerland, Geneva, Switzerland; Lehrstuhl für Strategie und Management der Landschaftsentwicklung, Technische Universität München, Germany.
| | - Andrey Valentinovich Smagin
- Lomonosov Moscow State University (MSU), 119991 Moscow, Russia; Institute of Forest Science of RAS, Moscow Region, Sovetskaya 21, 143030 Uspenskoe, Russia
| | - Stephan Pauleit
- Lehrstuhl für Strategie und Management der Landschaftsentwicklung, Technische Universität München, Germany
| | - Olivier Fouché-Grobla
- IRD, UMR IEES-Paris, Sorbonne Université/IRD/CNRS/INRAe/UPEC/Université de Paris, Centre IRD de France Nord, 32, Av. H. Varagnat, 93143 Bondy Cedex, France; Geomatics & Land Law Lab, Conservatoire national des Arts et Métiers (CNAM), Paris, France
| | - Pascal Podwojewski
- IRD, UMR IEES-Paris, Sorbonne Université/IRD/CNRS/INRAe/UPEC/Université de Paris, Centre IRD de France Nord, 32, Av. H. Varagnat, 93143 Bondy Cedex, France
| | - Peter M Groffman
- Advanced Science Research Center at the Graduate Center, City University of New York, New York, NY 10031, USA
| |
Collapse
|
6
|
Yu B, Chao DY, Zhao Y. How plants sense and respond to osmotic stress. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024; 66:394-423. [PMID: 38329193 DOI: 10.1111/jipb.13622] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/12/2024] [Accepted: 01/18/2024] [Indexed: 02/09/2024]
Abstract
Drought is one of the most serious abiotic stresses to land plants. Plants sense and respond to drought stress to survive under water deficiency. Scientists have studied how plants sense drought stress, or osmotic stress caused by drought, ever since Charles Darwin, and gradually obtained clues about osmotic stress sensing and signaling in plants. Osmotic stress is a physical stimulus that triggers many physiological changes at the cellular level, including changes in turgor, cell wall stiffness and integrity, membrane tension, and cell fluid volume, and plants may sense some of these stimuli and trigger downstream responses. In this review, we emphasized water potential and movements in organisms, compared putative signal inputs in cell wall-containing and cell wall-free organisms, prospected how plants sense changes in turgor, membrane tension, and cell fluid volume under osmotic stress according to advances in plants, animals, yeasts, and bacteria, summarized multilevel biochemical and physiological signal outputs, such as plasma membrane nanodomain formation, membrane water permeability, root hydrotropism, root halotropism, Casparian strip and suberin lamellae, and finally proposed a hypothesis that osmotic stress responses are likely to be a cocktail of signaling mediated by multiple osmosensors. We also discussed the core scientific questions, provided perspective about the future directions in this field, and highlighted the importance of robust and smart root systems and efficient source-sink allocations for generating future high-yield stress-resistant crops and plants.
Collapse
Affiliation(s)
- Bo Yu
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, The Chinese Academy of Sciences, Shanghai, 200032, China
- Key Laboratory of Plant Carbon Capture, The Chinese Academy of Sciences, Shanghai, 200032, China
| | - Dai-Yin Chao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, The Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yang Zhao
- Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, The Chinese Academy of Sciences, Shanghai, 200032, China
- Key Laboratory of Plant Carbon Capture, The Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| |
Collapse
|
7
|
Wang T, Liu B, Zhang X, Wang M, Tan D. Variations in root architecture traits and their association with organ mass fraction of common annual ephemeral species in the desert of northern Xinjiang. Ecol Evol 2024; 14:e10908. [PMID: 38327684 PMCID: PMC10847883 DOI: 10.1002/ece3.10908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 11/26/2023] [Accepted: 12/08/2023] [Indexed: 02/09/2024] Open
Abstract
The variation of plant traits is closely related to the trade-offs between resource acquisition and conservation, as well as the accumulation of biomass. However, there has been a lack of comprehensive insights into the variation patterns, phylogenetic conservatism, and covariation with biomass allocation of root system architecture in desert areas. We examined the root systems of 47 annual ephemeral species and evaluated their biomass allocation and six key root system architecture traits. Our results indicated that the variation in root traits mainly originated from interspecific variation (48.78%-99.76%), but intraspecific variation should not be ignored as to why the contribution rate of root tissue density (RTD) reached 51.22%. The six root traits were mainly loaded on the first and second axes of the principal component analysis (PCA), these traits mainly vary along two dimensions. The highest interspecific variation is in RTD (51.63%) and the lowest in topological index (TI; 5.92%). The intraspecific variation value and range of specific root length (SRL), specific root area (SRA), and RTD were significantly higher than TI (p < .05), and they are not limited by phylogenetic relationships (0< K < 1, p > .05). The SRA is positively correlated with SRL (r = .72, p < .001) and negatively correlated with RTD (r = -.57, p < .05). The LMF is positively correlated with SRL, and SRA demonstrated the coordination between water consumption and acquisition. The positive correlation between RMF and MRD indicated the coordination of root carbon investment with exploring soil vertical space. The multi-dimensional variation of root traits, divergence of RTDs, and convergence of TI are important ecological strategies for annual short-lived plants to adapt to heterogeneous desert habitats. Meanwhile, these plants achieve optimal access to scarce resources through the high plasticity of resource acquisition (e.g., SRL and SRA) and conservation traits (e.g., RTD), as well as the trade-offs between them and organ mass fraction.
Collapse
Affiliation(s)
- Taotao Wang
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life SciencesXinjiang Agricultural UniversityUrumqiChina
| | - Bangyan Liu
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life SciencesXinjiang Agricultural UniversityUrumqiChina
| | - Xuan Zhang
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life SciencesXinjiang Agricultural UniversityUrumqiChina
| | - Mao Wang
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life SciencesXinjiang Agricultural UniversityUrumqiChina
| | - Dunyan Tan
- Xinjiang Key Laboratory for Ecological Adaptation and Evolution of Extreme Environment Biology, College of Life SciencesXinjiang Agricultural UniversityUrumqiChina
| |
Collapse
|
8
|
Zhang Y, Patankar H, Aljedaani F, Blilou I. A framework for date palm (Phoenix dactylifera L.) tissue regeneration and stable transformation. PHYSIOLOGIA PLANTARUM 2024; 176:e14189. [PMID: 38342489 DOI: 10.1111/ppl.14189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/04/2024] [Accepted: 01/10/2024] [Indexed: 02/13/2024]
Abstract
The date palm is a resilient, socioeconomically valuable desert fruit tree renowned for its heat, drought, and salinity tolerance. Date palm fruits are rich in nutrients and antioxidants, and their beneficial health properties can mitigate current and future food security challenges. However, it is challenging to improve date palm production through conventional breeding methods due to its slow growth. Date palm seeds do not produce true-to-type progeny, and commercial propagation relies on direct organogenesis from maternal tissue. Consequently, numerous economically important and valuable cultivars are lost due to tissue recalcitrance and challenges in inducing cell dedifferentiation and regeneration. Moreover, genetic engineering of date palms is currently impossible due to the lack of a stable genetic transformation protocol. This hampers the development of genetic resources in date palms. This study established a tissue culture pipeline and a genetic transformation protocol for various commercially important date palm cultivars. We used the non-invasive visual reporter RUBY and four morphogenic regulators to validate and improve date palm transformation potential. We found that the date palm BABY-BOOM (PdBBM) and the WOUND INDUCED DEDIFFERENTIATION (PdWIND1) enhanced transformation efficacy. We show that PdBBM can induce embryogenesis in hormone-free media and regenerate roots and shoots in recalcitrant varieties. On the other hand, PdWIND1 maintained embryogenic cells in their undifferentiated state. Our study provides a foundation for genetically improving date palms and a potential solution for preserving economically valuable varieties.
Collapse
Affiliation(s)
- Yasha Zhang
- BESE Division, Plant Cell and Developmental Biology, Center for Desert and Agriculture, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
| | - Himanshu Patankar
- BESE Division, Plant Cell and Developmental Biology, Center for Desert and Agriculture, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
| | - Fatima Aljedaani
- BESE Division, Plant Cell and Developmental Biology, Center for Desert and Agriculture, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
| | - Ikram Blilou
- BESE Division, Plant Cell and Developmental Biology, Center for Desert and Agriculture, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
| |
Collapse
|
9
|
Kumar V, Wegener M, Knieper M, Kaya A, Viehhauser A, Dietz KJ. Strategies of Molecular Signal Integration for Optimized Plant Acclimation to Stress Combinations. Methods Mol Biol 2024; 2832:3-29. [PMID: 38869784 DOI: 10.1007/978-1-0716-3973-3_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
Plant growth and survival in their natural environment require versatile mitigation of diverse threats. The task is especially challenging due to the largely unpredictable interaction of countless abiotic and biotic factors. To resist an unfavorable environment, plants have evolved diverse sensing, signaling, and adaptive molecular mechanisms. Recent stress studies have identified molecular elements like secondary messengers (ROS, Ca2+, etc.), hormones (ABA, JA, etc.), and signaling proteins (SnRK, MAPK, etc.). However, major gaps remain in understanding the interaction between these pathways, and in particular under conditions of stress combinations. Here, we highlight the challenge of defining "stress" in such complex natural scenarios. Therefore, defining stress hallmarks for different combinations is crucial. We discuss three examples of robust and dynamic plant acclimation systems, outlining specific plant responses to complex stress overlaps. (a) The high plasticity of root system architecture is a decisive feature in sustainable crop development in times of global climate change. (b) Similarly, broad sensory abilities and apparent control of cellular metabolism under adverse conditions through retrograde signaling make chloroplasts an ideal hub. Functional specificity of the chloroplast-associated molecular patterns (ChAMPs) under combined stresses needs further focus. (c) The molecular integration of several hormonal signaling pathways, which bring together all cellular information to initiate the adaptive changes, needs resolving.
Collapse
Affiliation(s)
- Vijay Kumar
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany
| | - Melanie Wegener
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany
| | - Madita Knieper
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany
| | - Armağan Kaya
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany
| | - Andrea Viehhauser
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany
| | - Karl-Josef Dietz
- Biochemistry and Physiology of Plants, Faculty of Biology, Bielefeld University, Bielefeld, Germany.
| |
Collapse
|
10
|
Bennett JJR, Bera BK, Ferré M, Yizhaq H, Getzin S, Meron E. Phenotypic plasticity: A missing element in the theory of vegetation pattern formation. Proc Natl Acad Sci U S A 2023; 120:e2311528120. [PMID: 38060562 PMCID: PMC10723140 DOI: 10.1073/pnas.2311528120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 11/06/2023] [Indexed: 12/17/2023] Open
Abstract
Regular spatial patterns of vegetation are a common sight in drylands. Their formation is a population-level response to water stress that increases water availability for the few via partial plant mortality. At the individual level, plants can also adapt to water stress by changing their phenotype. Phenotypic plasticity of individual plants and spatial patterning of plant populations have extensively been studied independently, but the likely interplay between the two robust mechanisms has remained unexplored. In this paper, we incorporate phenotypic plasticity into a multi-level theory of vegetation pattern formation and use a fascinating ecological phenomenon, the Namibian "fairy circles," to demonstrate the need for such a theory. We show that phenotypic changes in the root structure of plants, coupled with pattern-forming feedback within soil layers, can resolve two puzzles that the current theory fails to explain: observations of multi-scale patterns and the absence of theoretically predicted large-scale stripe and spot patterns along the rainfall gradient. Importantly, we find that multi-level responses to stress unveil a wide variety of more effective stress-relaxation pathways, compared to single-level responses, implying a previously underestimated resilience of dryland ecosystems.
Collapse
Affiliation(s)
- Jamie J. R. Bennett
- The Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Midreshet Ben-Gurion8499000, Israel
| | - Bidesh K. Bera
- The Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Midreshet Ben-Gurion8499000, Israel
| | - Michel Ferré
- The Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Midreshet Ben-Gurion8499000, Israel
| | - Hezi Yizhaq
- The Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Midreshet Ben-Gurion8499000, Israel
| | - Stephan Getzin
- Department of Ecosystem Modelling, University of Goettingen, Goettingen37073, Germany
| | - Ehud Meron
- The Swiss Institute for Dryland Environmental and Energy Research, The Jacob Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Midreshet Ben-Gurion8499000, Israel
- Physics Department, Ben-Gurion University of the Negev, Beer-Sheva8410501, Israel
| |
Collapse
|
11
|
Mu X, Zheng X, Huang G, Tang L, Li Y. Responses of Ephemeral Plants to Precipitation Changes and Their Effects on Community in Central Asia Cold Desert. PLANTS (BASEL, SWITZERLAND) 2023; 12:2841. [PMID: 37570995 PMCID: PMC10421208 DOI: 10.3390/plants12152841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/21/2023] [Accepted: 07/28/2023] [Indexed: 08/13/2023]
Abstract
In the context of global climate change, changes in precipitation patterns will have profound effects on desert plants, particularly on shallow-rooted plants, such as ephemeral plants. Therefore, we conducted an experiment on artificial control of precipitation for four dominant ephemeral plants, Erodium oxyrhinchum, Alyssum linifolium, Malcolmia scorpioides, and Hyalea pulchella, in the southern edge of Gurbantunggut Desert. We measured the importance value and some growth parameters of the four species under increased or decreased precipitation and constructed trait correlation networks for each of the four species. We also compared the response of increased or decreased precipitation to vegetation coverage. The results show that drought significantly reduced the survival rate, seed production and weight, and aboveground biomass accumulation of ephemeral plants. The four ephemeral plants showed different tolerance and response strategies to precipitation changes. E. oxyrhinchum and M. scorpioides can avoid drought by accelerating life history, and E. oxyrhinchum, A. linifolium, and H. pulchella can alleviate the negative effects of drought by adjusting leaf traits. However, the response of different species to the wet treatment was not consistent. Based on the results of the trait correlation network, we consider A. linifolium belongs to the ruderal plant, E. oxyrhinchum and M. scorpioides belong to the competitive plants, and H. pulchella belongs to the stress-tolerant plant. The outstanding trait coordination ability of E. oxyrhinchum makes it show absolute dominance in the community. This indicate that ephemeral plants can adapt to precipitation changes to a certain extent, and that distinct competitive advantages in growth or reproduction enabled species coexistence in the same ecological niche. Nevertheless, drought significantly reduces their community cover and the ecological value of ephemeral plants. These findings established the basis to predict vegetation dynamics in arid areas under precipitation changes.
Collapse
Affiliation(s)
- Xiaohan Mu
- State Key Laboratory of Desert and Oasis Ecology/Fukang Station of Desert Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (X.M.)
| | - Xinjun Zheng
- State Key Laboratory of Desert and Oasis Ecology/Fukang Station of Desert Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (X.M.)
| | - Gang Huang
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350007, China
| | - Lisong Tang
- State Key Laboratory of Desert and Oasis Ecology/Fukang Station of Desert Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (X.M.)
| | - Yan Li
- State Key Laboratory of Desert and Oasis Ecology/Fukang Station of Desert Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (X.M.)
| |
Collapse
|
12
|
Abdullah M, Al-Ali Z, Abulibdeh A, Mohan M, Srinivasan S, Al-Awadhi T. Investigating the succession process of native desert plants over hydrocarbon-contaminated soils using remote sensing techniques. ENVIRONMENTAL RESEARCH 2023; 219:114955. [PMID: 36495962 DOI: 10.1016/j.envres.2022.114955] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/30/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Hydrocarbon-contaminated soils are considered as one of the major environmental issues that harm human well-being, particularly in arid regions of the world. Phytoremediation is a possible mitigation measure for this issue and has been suggested as it is cost-effective compared with other remediation technologies for soil clean-up, such as soil thermal treatment and soil washing. However, there are still gaps in the literature regarding the behavior of annual and perennial desert plants and their ability to survive in hydrocarbon-contaminated soils in arid ecosystems. Therefore, this study aims to develop an integrated approach using remote sensing techniques to understand the behavior of annual and perennial desert plants over different types of oil-contaminated soils (oil tarcrete, wet-oil lake, bare soil, and vegetation cover) in the Kuwait Desert and to explore the impact of climate and physical soil properties on the regrowth of native desert plants. The Normalized Difference Vegetation Index (NDVI), Normalized Difference Water Index (NDWI), and ferrous iron (Fe2+) index (FI) were used to determine the changes in oil contamination and vegetation cover from 1992 to 2002, and 2013-2020. Subsequently, statistical tests were performed to determine the influence of climatic and soil physical characteristics on changes in hydrocarbon contamination and desert plant behavior. The results showed that hydrocarbon contamination was high at the study sites in the first six years (1992-1997) after contamination, and then decreased in the following years. However, vegetation cover was low in the first six years but significantly increased after 1998, reaching >65%. It was also found that annual plants had the highest distribution rate compared to perennial plants, which mainly depended on the soil type. We concluded that certain annual and perennial plants could successfully grow over tarcrete-contaminated sites, making these sites more suitable for the restoration of native desert plants than hydrocarbon-contaminated sites. We also observed that the succession process of vegetation growth over hydrocarbon-contaminated soils could be associated with vegetation growth on a clean sediment layer covering the oil layer. Additionally, we observed that the remobilization of aeolian sediment over many contaminated sites in Kuwait resulted in the accumulation of organic matter, plant seeds, and dust particles that create layers of nutrient-rich soil for the initial growth of plants.
Collapse
Affiliation(s)
- Meshal Abdullah
- Geography Department, College of Arts and Social Sciences, Sultan Qaboos University, Muscat, P.O. Box 50, Oman; Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX 77843, USA; Natural Environmental Systems and Technologies (NEST) Research Group, Ecolife Sciences Research and Consultation, Kuwait.
| | - Zahraa Al-Ali
- Applied Geography and GIS Program, Department of Humanities, College of Arts and Sciences, Qatar University, P.O Box:2713-Doha, Qatar.
| | - Ammar Abulibdeh
- Applied Geography and GIS Program, Department of Humanities, College of Arts and Sciences, Qatar University, P.O Box:2713-Doha, Qatar
| | - Midhun Mohan
- Department of Geography, University of California-Berkeley, Berkeley, CA 94709, USA
| | - Shruthi Srinivasan
- Dept. of Forest Analytics, Texas A&M Forest Service, Dallas, TX 75252, USA
| | - Talal Al-Awadhi
- Geography Department, College of Arts and Social Sciences, Sultan Qaboos University, Muscat, P.O. Box 50, Oman
| |
Collapse
|
13
|
Blilou I, Hirt H. Desert plants to stop desertification: To succeed, reforestation projects to reclaim once fertile lands need to consider the local abiotic, biotic, and social factors: To succeed, reforestation projects to reclaim once fertile lands need to consider the local abiotic, biotic, and social factors. EMBO Rep 2023; 24:e56687. [PMID: 36579758 PMCID: PMC9900327 DOI: 10.15252/embr.202256687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 12/19/2022] [Indexed: 12/30/2022] Open
Abstract
Understanding the intricate relationship between plants, desert soils, and desert-specific microbiomes would increase the success chances for reforestation projects to reclaim lands lost to desertification.
Collapse
Affiliation(s)
- Ikram Blilou
- Center for Desert AgricultureKing Abdullah University of Science and TechnologyThuwalSaudi Arabia
| | - Heribert Hirt
- Center for Desert AgricultureKing Abdullah University of Science and TechnologyThuwalSaudi Arabia
| |
Collapse
|
14
|
Lu S, Chen Y, Wang S, Han B, Zhao C, Xue P, Zhang Y, Fang H, Wang B, Cao Y. Combined metabolomic and transcriptomic analysis reveals key components of OsCIPK17 overexpression improves drought tolerance in rice. FRONTIERS IN PLANT SCIENCE 2023; 13:1043757. [PMID: 36699859 PMCID: PMC9868928 DOI: 10.3389/fpls.2022.1043757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 12/20/2022] [Indexed: 06/17/2023]
Abstract
Oryza Sativa is one of the most important food crops in China, which is easily affected by drought during its growth and development. As a member of the calcium signaling pathway, CBL-interacting protein kinase (CIPK) plays an important role in plant growth and development as well as environmental stress. However, there is no report on the function and mechanism of OsCIPK17 in rice drought resistance. We combined transcriptional and metabonomic analysis to clarify the specific mechanism of OsCIPK17 in response to rice drought tolerance. The results showed that OsCIPK17 improved drought resistance of rice by regulating deep roots under drought stress; Response to drought by regulating the energy metabolism pathway and controlling the accumulation of citric acid in the tricarboxylic acid (TCA) cycle; Our exogenous experiments also proved that OsCIPK17 responds to citric acid, and this process involves the auxin metabolism pathway; Exogenous citric acid can improve the drought resistance of overexpression plants. Our research reveals that OsCIPK17 positively regulates rice drought resistance and participates in the accumulation of citric acid in the TCA cycle, providing new insights for rice drought resistance.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | - Baohua Wang
- *Correspondence: Baohua Wang, ; Yunying Cao,
| | - Yunying Cao
- *Correspondence: Baohua Wang, ; Yunying Cao,
| |
Collapse
|
15
|
Wang T, Huang L, Zhang X, Wang M, Tan D. Root Morphology and Biomass Allocation of 50 Annual Ephemeral Species in Relation to Two Soil Condition. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11192495. [PMID: 36235362 PMCID: PMC9570868 DOI: 10.3390/plants11192495] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/15/2022] [Accepted: 09/16/2022] [Indexed: 05/09/2023]
Abstract
Different organ morphologies determine the manner in which plants acquire resources, and the proportion of biomass of each organ is a critical driving force for organs to function in the future. Regrettably, we still lack a comprehensive understanding of root traits and seedling biomass allocation. Accordingly, we investigated and collected the seedling root morphological traits and biomass allocation of 50 annual ephemeral species to clarify the adaptation to environment. The findings of this study showed that there was a significantly negative correlation between root tissue density (RTD) and root diameter (RD) (p < 0.05), which did not conform to the hypothesis of the one-dimensional root economics spectrum (RES). On this basis, we divided 50 plant species into those rooted in dense or gravelly sand (DGS) or loose sand (LS) groups according to two soil conditions to determine the differences in root strategy and plant strategy between the two groups of plants. Our study revealed that the species rooting DGS tend to adopt a high penetration root strategy. However, the species rooting LS adopt high resource acquisition efficiency. At the whole-plant level, 50 species of ephemerals were distributed along the resource acquisition and conservation axis. Species rooting DGS tend to adopt the conservation strategy of high stem biomass fraction and low resource acquisition efficiency, while species rooting LS tend to adopt the acquisition strategy of high root and leaf biomass fraction and high resource acquisition efficiency. The research results provide a theoretical basis for the restoration and protection of vegetation in desert areas.
Collapse
|
16
|
Yang YZ, Luo MX, Pang LD, Gao RH, Chang JT, Liao PC. Parallel adaptation prompted core-periphery divergence of Ammopiptanthus mongolicus. FRONTIERS IN PLANT SCIENCE 2022; 13:956374. [PMID: 36092420 PMCID: PMC9449729 DOI: 10.3389/fpls.2022.956374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
Range expansion requires peripheral populations to shift adaptive optima to breach range boundaries. Opportunities for range expansion can be assessed by investigating the associations of core-periphery environmental and genetic differences. This study investigates differences in the core-periphery adaptation of Ammopiptanthus mongolicus, a broad-leaved evergreen shrub species in a relatively homogeneous temperate Asian desert environment, to explore the environmental factors that limit the expansion of desert plants. Temperate deserts are characterized by severe drought, a large diurnal temperature range, and seasonality. Long-standing adaptation to the harsh desert environment may confine the genetic diversity of A. mongolicus, despite its distribution over a wide range of longitude, latitude, and altitude. Since range edges defined by climate niches may have different genetic responses to environmental extremes, we compared genome-wide polymorphisms between nine environmental core populations and ten fragmented peripheral populations to determine the "adaptive peripheral" populations. At least four adaptive peripheral populations had similar genetic-environmental association patterns. High elevations, summer drought, and winter cold were the three main determinants of converging these four adaptive peripheral populations. Elevation mainly caused similar local climates among different geographic regions. Altitudinal adaptation resulting from integrated environmental-genetic responses was a breakthrough in breaching niche boundaries. These peripheral populations are also located in relatively humid and warmer environments. Relaxation of the drought and cold constraints facilitated the genetic divergence of these peripheral populations from the core population's adaptive legacy. We conclude that pleiotropic selection synchronized adaptative divergence to cold and drought vs. warm and humid environments between the core and peripheral populations. Such parallel adaptation of peripheral populations relies on selection under a background of abundant new variants derived from the core population's standing genetic variation, i.e., integration of genetic surfing and local adaptation.
Collapse
Affiliation(s)
- Yong-Zhi Yang
- College of Forestry, Inner Mongolia Agricultural University, Huhhot, China
| | - Min-Xin Luo
- School of Life Sciences, National Taiwan Normal University, Taipei, Taiwan
| | - Li-Dong Pang
- College Resource and Environmental Economics, Inner Mongolia University of Finance and Economics, Huhhot, China
| | - Run-Hong Gao
- College of Forestry, Inner Mongolia Agricultural University, Huhhot, China
| | - Jui-Tse Chang
- School of Life Sciences, National Taiwan Normal University, Taipei, Taiwan
| | - Pei-Chun Liao
- School of Life Sciences, National Taiwan Normal University, Taipei, Taiwan
| |
Collapse
|
17
|
Wylie S, Li H. Historical and Scientific Evidence for the Origin and Cultural Importance to Australia's First-Nations Peoples of the Laboratory Accession of Nicotiana benthamiana, a Model for Plant Virology. Viruses 2022; 14:771. [PMID: 35458501 PMCID: PMC9027518 DOI: 10.3390/v14040771] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 04/04/2022] [Accepted: 04/04/2022] [Indexed: 02/01/2023] Open
Abstract
Nicotiana benthamiana is an indigenous plant species distributed across northern Australia. The laboratory accession (LAB) of N. benthamiana has become widely adopted as a model host for plant viruses, and it is distinct from other accessions morphologically, physiologically, and by having an attenuation-of-function mutation in the RNA-dependent RNA polymerase 1 (NbRdr1) gene, referred to as NbRdr1m. Recent historical evidence suggested LAB was derived from a 1936 collection by John Cleland at The Granites of the Northern Territory, although no scientific evidence was provided. We provide scientific evidence and further historical evidence supporting the origin of LAB as The Granites. Analysis of a herbarium specimen of N. benthamiana collected by Cleland in 1936 revealed that The Granites population contains plants heterozygous for the NbRdr1 locus, having both the functional NbRdr1 and the mutant NbRdr1m alleles. N. benthamiana was an important cultural asset actively utilised as the narcotic Pituri (chewing tobacco) by the Warlpiri Aboriginal people at the site, who prevented women of child-bearing age from consuming it. We propose that Aboriginal people selected some of the unique traits of LAB that have subsequently facilitated its adoption as a model plant, such as lack of seed dormancy, fast maturity, low nornicotine content, and gracility.
Collapse
Affiliation(s)
- Steve Wylie
- Plant Biotechnology Research Group (Virology), Western Australian State Agricultural Biotechnology Centre, Murdoch University, 90 South Street, Murdoch 6150, Australia;
| | | |
Collapse
|
18
|
Wang M, Zhang L, Tong S, Jiang D, Fu Z. Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron. DNA Res 2022; 29:dsac006. [PMID: 35266513 PMCID: PMC8946665 DOI: 10.1093/dnares/dsac006] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 03/09/2022] [Indexed: 01/30/2023] Open
Abstract
Haloxylon ammodendron is a xerophytic perennial shrub or small tree that has a high ecological value in anti-desertification due to its high tolerance to drought and salt stress. Here, we report a high-quality, chromosome-level genome assembly of H. ammodendron by integrating PacBio's high-fidelity sequencing and Hi-C technology. The assembled genome size was 685.4 Mb, of which 99.6% was assigned to nine pseudochromosomes with a contig N50 value of 23.6 Mb. Evolutionary analysis showed that both the recent substantial amplification of long terminal repeat retrotransposons and tandem gene duplication may have contributed to its genome size expansion and arid adaptation. An ample amount of low-GC genes was closely related to functions that may contribute to the desert adaptation of H. ammodendron. Gene family clustering together with gene expression analysis identified differentially expressed genes that may play important roles in the direct response of H. ammodendron to water-deficit stress. We also identified several genes possibly related to the degraded scaly leaves and well-developed root system of H. ammodendron. The reference-level genome assembly presented here will provide a valuable genomic resource for studying the genome evolution of xerophytic plants, as well as for further genetic breeding studies of H. ammodendron.
Collapse
Affiliation(s)
- Mingcheng Wang
- Institute for Advanced Study, Chengdu University, Chengdu 610106, China
| | - Lei Zhang
- Key Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of the People’s Republic of China, College of Biological Science & Engineering, North Minzu University, Yinchuan 750001, China
| | - Shaofei Tong
- MOE Key Laboratory for Bio-resources and Eco-environment, College of Life Science, Sichuan University, Chengdu 610105, China
| | - Dechun Jiang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Zhixi Fu
- College of Life Sciences, Sichuan Normal University, Chengdu 610101, China
| |
Collapse
|
19
|
Plant CDKs-Driving the Cell Cycle through Climate Change. PLANTS 2021; 10:plants10091804. [PMID: 34579337 PMCID: PMC8468384 DOI: 10.3390/plants10091804] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 08/03/2021] [Accepted: 08/23/2021] [Indexed: 02/06/2023]
Abstract
In a growing population, producing enough food has become a challenge in the face of the dramatic increase in climate change. Plants, during their evolution as sessile organisms, developed countless mechanisms to better adapt to the environment and its fluctuations. One important way is through the plasticity of their body and their forms, which are modulated during plant growth by accurate control of cell divisions. A family of serine/threonine kinases called cyclin-dependent kinases (CDK) is a key regulator of cell divisions by controlling cell cycle progression. In this review, we compile information on the primary response of plants in the regulation of the cell cycle in response to environmental stresses and show how the cell cycle proteins (mainly the cyclin-dependent kinases) involved in this regulation can act as components of environmental response signaling cascades, triggering adaptive responses to drive the cycle through climate fluctuations. Understanding the roles of CDKs and their regulators in the face of adversity may be crucial to meeting the challenge of increasing agricultural productivity in a new climate.
Collapse
|