1
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Jenne A, Soong R, Downey K, Biswas RG, Decker V, Busse F, Goerling B, Haber A, Simpson MJ, Simpson AJ. Brewing alcohol 101: An undergraduate experiment utilizing benchtop NMR for quantification and process monitoring. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:429-438. [PMID: 38230451 DOI: 10.1002/mrc.5428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 12/22/2023] [Accepted: 01/01/2024] [Indexed: 01/18/2024]
Abstract
In recent years there has been a renewed interest in benchtop NMR. Given their lower cost of ownership, smaller footprint, and ease of use, they are especially suited as an educational tool. Here, a new experiment targeted at upper-year undergraduates and first-year graduate students follows the conversion of D-glucose into ethanol at low-field. First, high and low-field data on D-glucose are compared and students learn both the Hz and ppm scales and how J-coupling is field-independent. The students then acquire their own quantitative NMR datasets and perform the quantification using an Electronic Reference To Access In Vivo Concentration (ERETIC) technique. To our knowledge ERETIC is not currently taught at the undergraduate level, but has an advantage in that internal standards are not required; ideal for following processes or with future use in flow-based benchtop monitoring. Using this quantitative data, students can relate a simple chemical process (fermentation) back to more complex topics such as reaction kinetics, bridging the gaps between analytical and physical chemistry. When asked to reflect on the experiment, students had an overwhelmingly positive experience, citing agreement with learning objectives, ease of understanding the protocol, and enjoyment. Each of the respondents recommended this experiment as a learning tool for others. This experiment has been outlined for other instructors to utilize in their own courses across institutions, with the hope that a continued expansion of low-field NMR will increase accessibility and learning opportunities at the undergraduate level.
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Affiliation(s)
- Amy Jenne
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Ronald Soong
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Katelyn Downey
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | | | | | | | | | | | - Myrna J Simpson
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
| | - Andre J Simpson
- Environmental NMR Center, University of Toronto Scarborough, Toronto, ON, Canada
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2
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Morra S, Lanzilli M, Grazioso A, Cupo A, Landi S, Nuzzo G, Castiglia D, Gallo C, Manzo E, Fontana A, d’Ippolito G. Potential of Lipid Biosynthesis under Heterotrophy in the Marine Diatom Cyclotella cryptica. ACS SUSTAINABLE CHEMISTRY & ENGINEERING 2023; 11:17607-17615. [PMID: 38130845 PMCID: PMC10731643 DOI: 10.1021/acssuschemeng.3c02542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 11/04/2023] [Accepted: 11/06/2023] [Indexed: 12/23/2023]
Abstract
Despite the theoretical high productivity, microalgae-based oil production is not economically sustainable due to the high cost of photoautotrophic cultures. Heterotrophic growth is a suitable economic alternative to overcoming light dependence and climatic/geographic fluctuations. Here we report data about growth performance, biomass production, and lipid composition of the marine diatom Cyclotella cryptica, chosen as a model strain for biodiesel production in heterothrophy. A repeated-batch process of heterotrophic cultivation has also been investigated to assess the robustness and phenotypic stability. The process consisting of six constant cycle repetitions was carried out for 42 days and led to an average dry biomass production of 1.5 ± 0.1 g L-1 of which 20% lipids composed of 60% triglycerides, 20% phospholipids. and 20% glycolipids. The major fatty acids were C16:0 (∼26%), C16:1 ω-7 (∼57%), and C20:5 ω-3 (∼12%), with a significant reduction in the unsaturated fatty acids in comparison to other microalgae grown in heterotrophy. Fatty acids were differently distributed among the glycerolipid classes, and the lipid composition was used to compare the potential properties of C. cryptica oil with traditional vegetable biofuels.
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Affiliation(s)
- Salvatore Morra
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Mariamichela Lanzilli
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Angela Grazioso
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
- Department
of Biology, University of Naples “Federico
II”, Via Cinthia, I-80126 Napoli, Italy
| | - Adelaide Cupo
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Simone Landi
- Department
of Biology, University of Naples “Federico
II”, Via Cinthia, I-80126 Napoli, Italy
| | - Genoveffa Nuzzo
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Daniela Castiglia
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Carmela Gallo
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Emiliano Manzo
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Angelo Fontana
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
- Department
of Biology, University of Naples “Federico
II”, Via Cinthia, I-80126 Napoli, Italy
| | - Giuliana d’Ippolito
- National
Research Council (CNR), Institute of Biomolecular
Chemistry (ICB), Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
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3
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Wood PL, Wood MD, Kunigelis SC. Pilot Lipidomics Study of Copepods: Investigation of Potential Lipid-Based Biomarkers for the Early Detection and Quantification of the Biological Effects of Climate Change on the Oceanic Food Chain. Life (Basel) 2023; 13:2335. [PMID: 38137936 PMCID: PMC10744631 DOI: 10.3390/life13122335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 11/30/2023] [Accepted: 12/11/2023] [Indexed: 12/24/2023] Open
Abstract
Maintenance of the health of our oceans is critical for the survival of the oceanic food chain upon which humanity is dependent. Zooplanktonic copepods are among the most numerous multicellular organisms on earth. As the base of the primary consumer food web, they constitute a major biomass in oceans, being an important food source for fish and functioning in the carbon cycle. The potential impact of climate change on copepod populations is an area of intense study. Omics technologies offer the potential to detect early metabolic alterations induced by the stresses of climate change. One such omics approach is lipidomics, which can accurately quantify changes in lipid pools serving structural, signal transduction, and energy roles. We utilized high-resolution mass spectrometry (≤2 ppm mass error) to characterize the lipidome of three different species of copepods in an effort to identify lipid-based biomarkers of copepod health and viability which are more sensitive than observational tools. With the establishment of such a lipid database, we will have an analytical platform useful for prospectively monitoring the lipidome of copepods in a planned long-term five-year ecological study of climate change on this oceanic sentinel species. The copepods examined in this pilot study included a North Atlantic species (Calanus finmarchicus) and two species from the Gulf of Mexico, one a filter feeder (Acartia tonsa) and one a hunter (Labidocerca aestiva). Our findings clearly indicate that the lipidomes of copepod species can vary greatly, supporting the need to obtain a broad snapshot of each unique lipidome in a long-term multigeneration prospective study of climate change. This is critical, since there may well be species-specific responses to the stressors of climate change and co-stressors such as pollution. While lipid nomenclature and biochemistry are extremely complex, it is not essential for all readers interested in climate change to understand all of the various lipid classes presented in this study. The clear message from this research is that we can monitor key copepod lipid families with high accuracy, and therefore potentially monitor lipid families that respond to environmental perturbations evoked by climate change.
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Affiliation(s)
- Paul L. Wood
- Metabolomics Unit, College of Veterinary Medicine, Lincoln Memorial University, 6965 Cumberland Gap Pkwy., Harrogate, TN 37752, USA
| | - Michael D. Wood
- Child and Adolescent Psychiatry, BC Children’s and Women’s Hospital & Provincial Health Services Authority, Vancouver, BC V5Z 4H4, Canada;
| | - Stan C. Kunigelis
- Imaging and Analysis Center, DeBusk College of Osteopathic Medicine, Lincoln Memorial University, 6965 Cumberland Gap Pkwy., Harrogate, TN 37752, USA;
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Jaiswal KK, Kumar V, Arora N, Vlaskin MS. Evaluation of the mechanisms underlying altered fatty acid biosynthesis in heterotrophic microalgal strain Chlorella sorokiniana during biodegradation of phenol and p-nitrophenol. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:87866-87879. [PMID: 37432577 DOI: 10.1007/s11356-023-28615-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 07/01/2023] [Indexed: 07/12/2023]
Abstract
Phenolic compounds have become a severe environmental concern due to water contamination, affecting the sustainability of the ecosystem. The microalgae enzymes have enticed for the efficient involvement in the biodegradation of phenolics compound in metabolic processes. In this investigation, the oleaginous microalgae Chlorella sorokiniana was cultured heterotrophically under the influence of phenol and p-nitrophenol. The enzymatic assays of algal cell extracts were used to decipher the underlying mechanisms for phenol and p-nitrophenol biodegradation. A reduction of 99.58% and 97.21% in phenol and p-nitrophenol values, respectively, was recorded after the 10th day of microalgae cultivation. Also, the biochemical components in phenol, p-nitrophenol, and control were found to be 39.6 ± 2.3%, 36.7 ± 1.3%, and 30.9 ± 1.8% (total lipids); 27.4 ± 1.4%, 28.3 ± 1.8%, and 19.7 ± 1.5% (total carbohydrates); and 26.7 ± 1.9%, 28.3 ± 1.9%, and 39.9 ± 1.2% (total proteins), respectively. The GC-MS and 1H-NMR spectroscopy attested the incidence of fatty acid methyl esters in the synthesized microalgal biodiesel. The activity of catechol 2,3-dioxygenase and hydroquinone 1,2-dioxygenase in microalgae under heterotrophic conditions has conferred the ortho- and hydroquinone pathways for phenol and p-nitrophenol biodegradation, respectively. Also, the acceleration of fatty acid profiles in microalgae is deliberated under the impact of the phenol and p-nitrophenol biodegradation process. Thus, microalgae enzymes in the metabolic degradation process of phenolic compounds encourage ecosystem sustainability and biodiesel prospects due to the increased lipid profiles of microalgae.
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Affiliation(s)
- Krishna Kumar Jaiswal
- Bioprocess Engineering Laboratory, Department of Green Energy Technology, Pondicherry University, Puducherry, 605014, India
| | - Vinod Kumar
- Algal Research and Bioenergy Lab, Department of Life Sciences, Graphic Era (Deemed to Be University), Dehradun, 248002, India.
- Peoples' Friendship University of Russia (RUDN University), Moscow, 117198, Russian Federation.
| | - Neha Arora
- Patel College of Global Sustainability, University of South Florida, Tampa, FL, USA
| | - Mikhail S Vlaskin
- Joint Institute for High Temperatures of the Russian Academy of Sciences, 13/2 Izhorskaya St, Moscow, 125412, Russia
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5
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Stonik VA, Stonik IV. Carbohydrate-Containing Low Molecular Weight Metabolites of Microalgae. Mar Drugs 2023; 21:427. [PMID: 37623708 PMCID: PMC10456119 DOI: 10.3390/md21080427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/24/2023] [Accepted: 07/26/2023] [Indexed: 08/26/2023] Open
Abstract
Microalgae are abundant components of the biosphere rich in low molecular weight carbohydrate-containing natural products (glycoconjugates). Glycoconjugates take part in the processes of photosynthesis, provide producers with important biological molecules, influence other organisms and are known by their biological activities. Some of them, for example, glycosylated toxins and arsenicals, are detrimental and can be transferred via food chains into higher organisms, including humans. So far, the studies on a series of particular groups of microalgal glycoconjugates were not comprehensively discussed in special reviews. In this review, a special focus is given to glycoconjugates' isolation, structure determination, properties and approaches to search for new bioactive metabolites. Analysis of literature data concerning structures, functions and biological activities of ribosylated arsenicals, galactosylated and sulfoquinovosylated lipids, phosphoglycolipids, glycoside derivatives of toxins, and other groups of glycoconjugates was carried out and discussed. Recent studies were fundamental in the discovery of a great variety of new carbohydrate-containing metabolites and their biological activities in defining the role of microalgal viral infections in regulating microalgal blooms as well as in the detection of glycoconjugates with potent immunomodulatory properties. Those discoveries support growing interest in these molecules.
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Affiliation(s)
- Valentin A. Stonik
- G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, Pr. 100-letya Vladivostoka 159, 690022 Vladivostok, Russia;
| | - Inna V. Stonik
- A.V. Zhurmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, ul. Palchevskogo 17, 690041 Vladivostok, Russia
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6
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Kavisri M, Abraham M, Moovendhan M. Effective removal of fluoride ions from aqueous solution by marine microalgae as natural biosorbent. CHEMOSPHERE 2023; 313:137312. [PMID: 36410513 DOI: 10.1016/j.chemosphere.2022.137312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 11/06/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
In this study, the phytoremediation technology from marine source Dunaliella salina was chosen to eliminate fluoride ions from aqueous solution by Adsorption isotherm, Kinetics and RSM optimization methods. Marine microalgae were collected, identified and mass cultured then its physical characteristics, functional groups and surface microstructure was examined by FT-IR, NMR, XRD and SEM analysis also the same was performed on post treated bioadsorbent. Fluoride removal was optimized by different conditions through response surface methodology and kinetics modelling also performed. Several active functional groups were noticed in IR spectra and NMR of pre and post treated microalgal biosorbent. Many micropores, crystalline structure, voids were observed in pre-treated and lesser in post treated bioadsorbent, removal process was optimized by temperature, pH, dose and time and its showed high influence of removal process. The fluoride removal process was optimized by response surface methodology, Langmuir Isotherm, Freundlich Isotherm, Temkin isotherm, Pseudo I order, Pseudo II order and Intra particle diffusion and revealed that the F ions removal mechanism clearly. Microalgae are novel, low-cost and effective bio based innovative methods which are sustainable for the bioremediation of fluoride from water bodies and industrial wastewaters.
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Affiliation(s)
- M Kavisri
- Departmeny of Civil Engineering, School of Building and Environment Sathyabama Institute of Science and Technology, Chennai, 600119, Tamil Nadu, India
| | - Marykutty Abraham
- Centre for Remote Sensing, Sathyabama Institute of Science and Technology, Chennai, 600119, Tamil Nadu, India
| | - Meivelu Moovendhan
- Centre for Ocean Research, Col.Dr.Jeppiar Research Park, Sathyabama Institute of Science and Technology, Chennai, 600 119, Tamil Nadu, India.
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7
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Graff Reis J, Dai Prá I, Michelon W, Viancelli A, Piedrahita Marquez DG, Schmitz C, Maraschin M, Moura S, Thaís Silva I, de Oliveira Costa G, Tizziani T, Sandjo LP, Rodríguez-Lázaro D, Fongaro G. Characterization of Planktochlorella nurekis Extracts and Virucidal Activity against a Coronavirus Model, the Murine Coronavirus 3. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:15823. [PMID: 36497896 PMCID: PMC9735810 DOI: 10.3390/ijerph192315823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 11/23/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Certain members of the Coronaviridae family have emerged as zoonotic agents and have recently caused severe respiratory diseases in humans and animals, such as SARS, MERS, and, more recently, COVID-19. Antivirals (drugs and antiseptics) capable of controlling viruses at the site of infection are scarce. Microalgae from the Chlorellaceae family are sources of bioactive compounds with antioxidant, antiviral, and antitumor activity. In the present study, we aimed to evaluate various extracts from Planktochlorella nurekis in vitro against murine coronavirus-3 (MHV-3), which is an essential human coronavirus surrogate for laboratory assays. Methanol, hexane, and dichloromethane extracts of P. nurekis were tested in cells infected with MHV-3, and characterized by UV-vis spectrophotometry, nuclear magnetic resonance (NMR) spectroscopy, ultraperformance liquid chromatography-mass spectrometry (UPLC-MS), and the application of chemometrics through principal component analysis (PCA). All the extracts were highly efficient against MHV-3 (more than a 6 Log unit reduction), regardless of the solvent used or the concentration of the extract, but the dichloromethane extract was the most effective. Chemical characterization by spectrophotometry and NMR, with the aid of statistical analysis, showed that polyphenols, carbohydrates, and isoprene derivatives, such as terpenes and carotenoids have a more significant impact on the virucidal potential. Compounds identified by UPLC-MS were mainly lipids and only found in the dichloromethane extract. These results open new biotechnological possibilities to explore the biomass of P. nurekis; it is a natural extract and shows low cytotoxicity and an excellent antiviral effect, with low production costs, highlighting a promising potential for development and implementation of therapies against coronaviruses, such as SARS-CoV-2.
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Affiliation(s)
- Jacqueline Graff Reis
- Laboratory of Applied Virology, Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Isabella Dai Prá
- Laboratory of Applied Virology, Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Department of Pharmaceutical Sciences, Federal University Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - William Michelon
- Mestrado Profissional em Engenharia Civil, Sanitária e Ambiental, Universidade do Contestado Concórdia, Concórdia 89520-000, SC, Brazil
| | - Aline Viancelli
- Mestrado Profissional em Engenharia Civil, Sanitária e Ambiental, Universidade do Contestado Concórdia, Concórdia 89520-000, SC, Brazil
| | | | - Caroline Schmitz
- Plant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianópolis 88034-000, SC, Brazil
| | - Marcelo Maraschin
- Plant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianópolis 88034-000, SC, Brazil
| | - Sidnei Moura
- LBIOP—Laboratory of Biotechnology of Natural and Synthetics Products, Technology Department, Biotechnology Institute, University of Caxias do Sul, Caxias do Sul 95070-560, RS, Brazil
| | - Izabella Thaís Silva
- Laboratory of Applied Virology, Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
- Department of Pharmaceutical Sciences, Federal University Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Geovanna de Oliveira Costa
- Programa de Pós-Graduação em Química, Department of Chemistry, CFM, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Tiago Tizziani
- Programa de Pós-Graduação em Química, Department of Chemistry, CFM, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - Louis P. Sandjo
- Programa de Pós-Graduação em Química, Department of Chemistry, CFM, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
| | - David Rodríguez-Lázaro
- Microbiology Section, Faculty of Sciences, University of Burgos, 09001 Burgos, Spain
- Centre for Emerging pathogens and Global Health, University of Burgos, 09001 Burgos, Spain
| | - Gislaine Fongaro
- Laboratory of Applied Virology, Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis 88040-900, SC, Brazil
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8
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Russell C, Rodriguez C, Yaseen M. Microalgae for lipid production: Cultivation, extraction & detection. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102765] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Gkioni MD, Andriopoulos V, Koutra E, Hatziantoniou S, Kornaros M, Lamari FN. Ultrasound-Assisted Extraction of Nannochloropsis oculata with Ethanol and Betaine: 1,2-Propanediol Eutectic Solvent for Antioxidant Pigment-Rich Extracts Retaining Nutritious the Residual Biomass. Antioxidants (Basel) 2022; 11:antiox11061103. [PMID: 35740000 PMCID: PMC9220189 DOI: 10.3390/antiox11061103] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 05/23/2022] [Accepted: 05/29/2022] [Indexed: 02/04/2023] Open
Abstract
The aim of this study was the development of an efficient “green” extraction method of Nannochloropsis oculata to produce antioxidant extracts and nutritious residual biomass. Twenty-one extraction methods were evaluated by measuring the reactivity with the Folin–Ciocalteu reagent: ultrasonication or maceration at different temperatures with different organic solvents, extraction at different pH values, enzyme-assisted extraction, encapsulation with β-cyclodextrin, and the use of natural deep eutectic solvents. Ultrasound-assisted extraction with ethanol or betaine: 1,2-propanediol in a molar ratio of 2:5 (BP) had optimal extractive capacity. Both extracts were evaluated with antioxidant assays and the ethanol extract exhibited significantly higher (at least twofold) values. The determination of carotenoids by LC-MS and HPLC-DAD revealed the dominance of violaxanthin and antheraxanthin and their fourfold higher concentrations in the ethanol extract. The 1H-NMR characterization of the ethanol extract confirmed the results of the colorimetric and chromatographic assays. The microalgal biomass was characterized before and after the extraction in terms of humidity, ash, carbohydrates, proteins, chlorophyll-a, carotenoids, and lipids; the identity and content of the latter were determined with gas chromatography. BP caused a smaller depletion of the lipids from the biomass compared to ethanol, but proteins, carbohydrates, and ash were at a higher content in the biomass obtained after ethanol extraction, whereas the biomass was dry and easy to handle. Although further optimization may take place for the scale-up of those procedures, our study paves the way for a green strategy for the valorization of microalgae in cosmetics without generating waste, since the remaining biomass can be used for aquafeed.
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Affiliation(s)
- Maria D. Gkioni
- Department of Pharmacy, School of Health Sciences, University of Patras, 26504 Patras, Greece; (M.D.G.); (S.H.)
| | - Vasilis Andriopoulos
- Department of Chemical Engineering, School of Engineering, University of Patras, 26504 Patras, Greece; (V.A.); (E.K.); (M.K.)
| | - Eleni Koutra
- Department of Chemical Engineering, School of Engineering, University of Patras, 26504 Patras, Greece; (V.A.); (E.K.); (M.K.)
| | - Sophia Hatziantoniou
- Department of Pharmacy, School of Health Sciences, University of Patras, 26504 Patras, Greece; (M.D.G.); (S.H.)
| | - Michael Kornaros
- Department of Chemical Engineering, School of Engineering, University of Patras, 26504 Patras, Greece; (V.A.); (E.K.); (M.K.)
| | - Fotini N. Lamari
- Department of Pharmacy, School of Health Sciences, University of Patras, 26504 Patras, Greece; (M.D.G.); (S.H.)
- Correspondence: ; Tel.: +30-2610962335
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10
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Siudem P, Zielińska A, Paradowska K. Application of 1H NMR in the study of fatty acids composition of vegetable oils. J Pharm Biomed Anal 2022; 212:114658. [DOI: 10.1016/j.jpba.2022.114658] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 02/06/2022] [Accepted: 02/08/2022] [Indexed: 10/19/2022]
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11
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Grubišić M, Šantek B, Zorić Z, Čošić Z, Vrana I, Gašparović B, Čož-Rakovac R, Ivančić Šantek M. Bioprospecting of Microalgae Isolated from the Adriatic Sea: Characterization of Biomass, Pigment, Lipid and Fatty Acid Composition, and Antioxidant and Antimicrobial Activity. Molecules 2022; 27:molecules27041248. [PMID: 35209036 PMCID: PMC8875609 DOI: 10.3390/molecules27041248] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 01/25/2022] [Accepted: 02/07/2022] [Indexed: 11/16/2022] Open
Abstract
Marine microalgae and cyanobacteria are sources of diverse bioactive compounds with potential biotechnological applications in food, feed, nutraceutical, pharmaceutical, cosmetic and biofuel industries. In this study, five microalgae, Nitzschia sp. S5, Nanofrustulum shiloi D1, Picochlorum sp. D3, Tetraselmis sp. Z3 and Tetraselmis sp. C6, and the cyanobacterium Euhalothece sp. C1 were isolated from the Adriatic Sea and characterized regarding their growth kinetics, biomass composition and specific products content (fatty acids, pigments, antioxidants, neutral and polar lipids). The strain Picochlorum sp. D3, showing the highest specific growth rate (0.009 h−1), had biomass productivity of 33.98 ± 0.02 mg L−1 day−1. Proteins were the most abundant macromolecule in the biomass (32.83–57.94%, g g−1). Nanofrustulum shiloi D1 contained significant amounts of neutral lipids (68.36%), while the biomass of Picochlorum sp. D3, Tetraselmis sp. Z3, Tetraselmis sp. C6 and Euhalothece sp. C1 was rich in glycolipids and phospholipids (75%). The lipids of all studied microalgae predominantly contained unsaturated fatty acids. Carotenoids were the most abundant pigments with the highest content of lutein and neoxanthin in representatives of Chlorophyta and fucoxanthin in strains belonging to the Bacillariophyta. All microalgal extracts showed antioxidant activity and antimicrobial activity against Gram-negative E. coli and S. typhimurium and Gram-positive S. aureus.
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Affiliation(s)
- Marina Grubišić
- Faculty of Food Technology and Biotechnology, University of Zagreb, 10000 Zagreb, Croatia; (M.G.); (B.Š.); (Z.Z.); (Z.Č.)
| | - Božidar Šantek
- Faculty of Food Technology and Biotechnology, University of Zagreb, 10000 Zagreb, Croatia; (M.G.); (B.Š.); (Z.Z.); (Z.Č.)
| | - Zoran Zorić
- Faculty of Food Technology and Biotechnology, University of Zagreb, 10000 Zagreb, Croatia; (M.G.); (B.Š.); (Z.Z.); (Z.Č.)
| | - Zrinka Čošić
- Faculty of Food Technology and Biotechnology, University of Zagreb, 10000 Zagreb, Croatia; (M.G.); (B.Š.); (Z.Z.); (Z.Č.)
| | - Ivna Vrana
- Laboratory for Marine and Atmospheric Biogeochemistry, Division for Marine and Environmental Research, Ruđer Bošković Institute, 10000 Zagreb, Croatia; (I.V.); (B.G.)
| | - Blaženka Gašparović
- Laboratory for Marine and Atmospheric Biogeochemistry, Division for Marine and Environmental Research, Ruđer Bošković Institute, 10000 Zagreb, Croatia; (I.V.); (B.G.)
| | - Rozelindra Čož-Rakovac
- Laboratory for Aquaculture Biotechnology, Division of Materials Chemistry, Ruđer Bošković Institute, 10000 Zagreb, Croatia;
- Center of Excellence for Marine Bioprospecting (BioProCro), Ruđer Bošković Institute, 10000 Zagreb, Croatia
| | - Mirela Ivančić Šantek
- Faculty of Food Technology and Biotechnology, University of Zagreb, 10000 Zagreb, Croatia; (M.G.); (B.Š.); (Z.Z.); (Z.Č.)
- Correspondence:
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12
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Beneficial use of the aqueous phase generated during hydrothermal carbonization of algae as nutrient source for algae cultivation. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102485] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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13
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Moreno Osorio JH, Pollio A, Frunzo L, Lens PNL, Esposito G. A Review of Microalgal Biofilm Technologies: Definition, Applications, Settings and Analysis. FRONTIERS IN CHEMICAL ENGINEERING 2021. [DOI: 10.3389/fceng.2021.737710] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Biofilm-based algal cultivation has many advantages over the conventional suspended growth methods and has received increased attention as a potential platform for algal production, wastewater treatment (nutrient removal), and a potential pathway to supply feedstock for microalgae-based biorefinery attempts. However, the attached cultivation by definition and application is a result of a complex interaction between the biotic and abiotic components involved. Therefore, the entire understanding of the biofilm nature is still a research challenge due to the need for real-time analysis of the system. In this review, the state of the art of biofilm definition, its life cycle, the proposed designs of bioreactors, screening of carrier materials, and non-destructive techniques for the study of biofilm formation and performance are summarized. Perspectives for future research needs are also discussed to provide a primary reference for the further development of microalgal biofilm systems.
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14
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Nanda M, Kumar V, Arora N, Vlaskin MS, Tripathi MK. 1H NMR-based metabolomics and lipidomics of microalgae. TRENDS IN PLANT SCIENCE 2021; 26:984-985. [PMID: 34246551 DOI: 10.1016/j.tplants.2021.06.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/11/2021] [Indexed: 06/13/2023]
Affiliation(s)
- Manisha Nanda
- Department of Biotechnology, Dolphin (PG) Institute of Biomedical and Natural Sciences, Dehradun 248007, Uttarakhand, India
| | - Vinod Kumar
- Department of Life Sciences, Graphic Era (Deemed to Be University), Dehradun 248002, Uttarakhand, India; Peoples' Friendship University of Russia (RUDN University), Moscow 117198, Russian Federation.
| | - Neha Arora
- Patel College of Global Sustainability, University of South Florida, Tampa, FL 33620, USA
| | - Mikhail S Vlaskin
- Joint Institute for High Temperatures of the Russian Academy of Sciences, Moscow 125412, Russian Federation
| | - Manoj K Tripathi
- Agro Produce Processing Division, ICAR-Central Institute of Agricultural Engineering, Bhopal 462038, Madhya Pradesh, India
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15
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The potential of nuclear magnetic resonance (NMR) in metabolomics and lipidomics of microalgae- a review. Arch Biochem Biophys 2021; 710:108987. [PMID: 34260946 DOI: 10.1016/j.abb.2021.108987] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 06/21/2021] [Accepted: 07/09/2021] [Indexed: 01/17/2023]
Abstract
Microalgae biotechnology has made it possible to derive secondary bioactive metabolites from microalgae strains that have opened up their entire potential to uncover a wide range of novel metabolic capabilities and turn these into bio-products for the development of sustainable bio-refineries. Nuclear Magnetic Resonance Technology (NMR) has been one of the most successful and functional research technology over the past two decades to analyse the composition, structure and functionality of distinct metabolites in the different microalgae strains. This technology offers qualitative as well as quantitative knowledge about the endogenous metabolites and lipids of low molecular mass to offer a good picture of the physiological state of biological samples in metabolomics and lipidomics studies. Henceforth, this review is aimed at introducing the metabolomics and lipidomics studies into the field of NMR technology and also highlights the protocols for the isolation and metabolic measurements of metabolites from microalgae that should be redirected to resource recovery and value-added products with a systematic and holistic approach for scalability or sustainability.
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16
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Cupo A, Landi S, Morra S, Nuzzo G, Gallo C, Manzo E, Fontana A, d’Ippolito G. Autotrophic vs. Heterotrophic Cultivation of the Marine Diatom Cyclotella cryptica for EPA Production. Mar Drugs 2021; 19:355. [PMID: 34201453 PMCID: PMC8303666 DOI: 10.3390/md19070355] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 06/07/2021] [Accepted: 06/15/2021] [Indexed: 12/31/2022] Open
Abstract
Recently, the marketable value of ω-3 fatty acid, particularly eicosapentaenoic acid (EPA), increased considering their health effects for human consumption. Microalgae are considered a valuable and "green" source of EPA alternative to fish oils, but considerable efforts are necessary for their exploitation at an industrial level. Due to the high operation costs of photoautotrophic microalgae cultivation, heterotrophic growth represents a promising economic solution. Marine diatoms are the major ecological producers of ω-3 fatty acids. Few species of diatoms are capable to grow in the dark using organic carbon sources. The marine diatom Cyclotella cryptica was cultivated for 14 days under photoautotrophic and heterotrophic conditions to define the effects on growth parameters, lipid production, total fatty acids and EPA content. Photoautotrophic conditions led to a total EPA production of 1.6% of dry weight, 12.2 mg L-1 culture and productivity of 0.9 mg L-1 day-1. The heterotrophy cultures reported a total EPA production of 2.7% of dry cell weight, 18 mg L-1 culture, a productivity of 1.3 mg L-1 day-1, which are promising values in the prospective of improving culture parameters for the biotechnological exploitation of dark cultivation. C. cryptica could be a potential candidate for the heterotrophic production of EPA, also considering its robustness, capacity to resist to bacterial contaminations and plasticity of lipid metabolism.
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Affiliation(s)
- Adelaide Cupo
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
- Department of Biology, University of Naples “Federico II”, Via Cinthia, 80126 Napoli, Italy;
| | - Simone Landi
- Department of Biology, University of Naples “Federico II”, Via Cinthia, 80126 Napoli, Italy;
| | - Salvatore Morra
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
| | - Genoveffa Nuzzo
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
| | - Carmela Gallo
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
| | - Emiliano Manzo
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
| | - Angelo Fontana
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
- Department of Biology, University of Naples “Federico II”, Via Cinthia, 80126 Napoli, Italy;
| | - Giuliana d’Ippolito
- Institute of Biomolecular Chemistry ICB-CNR, Via Campi Flegrei 34, 80078 Naples, Italy; (A.C.); (S.M.); (G.N.); (C.G.); (E.M.); (A.F.)
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17
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Isolation of Microalgae from Mediterranean Seawater and Production of Lipids in the Cultivated Species. Foods 2020; 9:foods9111601. [PMID: 33158015 PMCID: PMC7692243 DOI: 10.3390/foods9111601] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 10/29/2020] [Accepted: 10/30/2020] [Indexed: 11/20/2022] Open
Abstract
Isolation and identification of novel microalgae strains with high lipid productivity is one of the most important research topics to have emerged recently. However, practical production processes will probably require the use of local strains adapted to commanding climatic conditions. The present manuscript describes the isolation of 96 microalgae strains from seawater located in Bay M’diq, Morocco. Four strains were identified using the 18S rDNA and morphological identification through microscopic examination. The biomass and lipid productivity were compared and showed good results for Nannochloris sp. (15.93 mg/L/day). The lipid content in the four species, namely Nannochloropsis gaditana, Nannochloris sp., Phaedactylum tricornutum and Tetraselmis suecica, was carried out by high performance liquid chromatography coupled to mass spectrometry (HPLC-MS ) highlighting the identification of up to 77 compounds.
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18
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Tena Pérez V, Apaza Ticona L, Cabanillas AH, Maderuelo Corral S, Rosero Valencia DF, Quintana AM, Ortega Domenech M, Rumbero Sánchez Á. Anti-inflammatory activity of glycolipids isolated from cyanobacterium Nodularia harveyana. Nat Prod Res 2020; 35:6204-6209. [PMID: 33111583 DOI: 10.1080/14786419.2020.1837808] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Activity-guided fractionations from the freshwater cyanobacterium Nodularia harveyana led to the isolation of two monogalactosyldiacylglycerols (MGDG), two digalactosyldiacylglycerols (DGDG), two monoglucosyldiacylglycerols (MGlcDG) and 1-(O-hexose)-3,25-hexacosanediol (HG). Structures were elucidated by a combination of 1D and 2D NMR analysis, HRMS and GC-MS. The potential for inhibition against TNF-α and NF-κB production of these seven compounds was tested in THP-1 cells. All compounds showed activity, but compound 7 showed higher inhibitory activity of TNF-α and NF-κB, with IC50 of 4.88 ± 0.13 and 3.64 ± 0.45 μM, respectively.
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Affiliation(s)
- Víctor Tena Pérez
- Department of Organic Chemistry, Faculty of Sciences, University Autónoma of Madrid, Madrid, Spain
| | - Luis Apaza Ticona
- Department of Organic Chemistry, Faculty of Sciences, University Autónoma of Madrid, Madrid, Spain.,Department of Pharmacology, Pharmacognosy and Botany, Faculty of Pharmacy, University Complutense of Madrid, Madrid, Spain
| | - Alfredo H Cabanillas
- Department of Organic Chemistry, Faculty of Sciences, University Autónoma of Madrid, Madrid, Spain
| | | | | | | | | | - Ángel Rumbero Sánchez
- Department of Organic Chemistry, Faculty of Sciences, University Autónoma of Madrid, Madrid, Spain
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19
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Behera B, Patra S, Balasubramanian P. Biological nutrient recovery from human urine by enriching mixed microalgal consortium for biodiesel production. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 260:110111. [PMID: 32090822 DOI: 10.1016/j.jenvman.2020.110111] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 12/10/2019] [Accepted: 01/08/2020] [Indexed: 06/10/2023]
Abstract
Utilization of waste resources is necessary to harness the long-term sustainability of algal technology. The study focused on the use of human urine as the basic nutrient source for culturing native microalgal consortium and further optimized the process parameters using response surface methodology. A full factorial, central composite rotatable design (CCRD) with three variables: urine concentration (1-10% vol of urine/vol of distil water [%v/v]), pH (6.5-9) and light intensity (50-350 μmolphotonsm-2sec-1) was used to evaluate the microalgal biomass and lipid content. Results indicated that at 95% confidence limits, the selected factors influence the biomass and lipid productivity. The maximum biomass productivity of 211.63 ± 1.40 mg l-1 d-1 was obtained under optimized conditions with 6.50% v/v of urine, pH of 7.69 and at light intensity of 205.40 μmolphotonsm-2sec-1. The lipid content was found to increase from 18.96 ± 1.30% in control media to 26.27 ± 1.94% under optimal conditions. The interactive effect of variables over the microalgal biomass and lipid content has also been elucidated. The data obtained were comparable to the BG11 media (control). Optimized diluted urine media in the presence of ammonium ions and under limited nitrate showed better lipid yields. Significant lipid biomolecules were detected in the algal oil extracts obtained from the diluted urine media characterized by Fourier transform infrared spectroscopy (FTIR) and Nuclear magnetic resonance (NMR). Gas chromatography-mass spectrometry (GCMS) revealed the presence of several monounsaturated and polyunsaturated fatty acids in the transesterified algal oil. Such studies would aid in technically realizing the field scale cultivation of microalgae for biofuels.
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Affiliation(s)
- Bunushree Behera
- Agricultural & Environmental Biotechnology Group, Department of Biotechnology & Medical Engineering, National Institute of Technology Rourkela, Odisha, India
| | - Sandip Patra
- Agricultural & Environmental Biotechnology Group, Department of Biotechnology & Medical Engineering, National Institute of Technology Rourkela, Odisha, India
| | - P Balasubramanian
- Agricultural & Environmental Biotechnology Group, Department of Biotechnology & Medical Engineering, National Institute of Technology Rourkela, Odisha, India.
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20
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Iglesias MJ, Soengas R, Probert I, Guilloud E, Gourvil P, Mehiri M, López Y, Cepas V, Gutiérrez-Del-Río I, Redondo-Blanco S, Villar CJ, Lombó F, Soto S, Ortiz FL. NMR characterization and evaluation of antibacterial and antiobiofilm activity of organic extracts from stationary phase batch cultures of five marine microalgae (Dunaliella sp., D. salina, Chaetoceros calcitrans, C. gracilis and Tisochrysis lutea). PHYTOCHEMISTRY 2019; 164:192-205. [PMID: 31174083 DOI: 10.1016/j.phytochem.2019.05.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 04/11/2019] [Accepted: 05/06/2019] [Indexed: 06/09/2023]
Abstract
The chemical composition of five marine microalgae (Dunaliella sp., Dunaliella salina, Chaetoceros calcitrans, Chaetoceros gracilis and Tisochrysis lutea) was investigated through nuclear magnetic resonance (NMR) spectroscopic study of the soluble material obtained by sequential extraction with hexane, ethyl acetate (AcOEt) and methanol of biomass from stationary phase cultures. Hexane extracted the major lipids present in the microalgae during the stationary phase of growth, which correspond to storage lipids. Triacylglycerols (TGs) were the only storage lipids produced by Dunaliella and Chaetoceros. In contrast, T. lutea predominantly stored polyunsaturated long-chain alkenones, with sterols also detected as minor components of the hexane extract. The molecular structure of brassicasterol was determined in T. lutea and the presence of squalene in this sample was also unequivocally detected. Monogalactosyldiacylglycerols (MGDGs) and pigments were concentrated in the AcOEt extracts. C. calcitrans and D. salina constituted an exception due to the high amount of TGs and glycerol produced, respectively, by these two strains. Chlorophylls a and b and β-carotene were the major pigments synthesized by Dunaliella and chlorophyll a and fucoxanthin were the only pigments detected in Chaetoceros and T. lutea. Information concerning the acyl chains present in TGs and MGDGs as well as the positional distribution of acyl chains on the glycerol moiety was obtained by NMR analysis of hexane and AcOEt extracts, with results consistent with those expected for the genera studied. Fatty acid composition of TGs in the two Dunaliella strains was different, with polyunsaturated acyl chains almost absent in the storage lipids produced by D. salina. Except in C. calcitrans, the polar nature of soluble compounds was inferred through the relative extraction yield using methanol as the extraction solvent. Glycerol was the major component of this fraction for the Dunaliella strains. In T. lutea 1,4/2,5-cyclohexanetetrol (CHT) and dimethylsulfoniopropionate (DMSP) preponderated. CHT was also the major polyol present in the Chaetoceros strains in which DMSP was not detected, but prominent signals of 2,3-dihydroxypropane-1-sulfonate (DHSP) were observed in the 1H NMR spectra of methanolic extracts. The presence of DHSP confirms the production of this metabolite by diatoms. In addition, several other minor compounds (digalactosyldiacyglycerols (DGDGs), sulphoquinovosyldiacylglycerols (SQDGs), amino acids, carbohydrates, scyllo-inositol, mannitol, lactic acid and homarine) were also identified in the methanolic extracts. The antibacterial and antibiofilm activities of the extracts were tested. The AcOEt extract from C. gracilis showed a moderate antibiofilm activity.
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Affiliation(s)
- Ma José Iglesias
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain.
| | - Raquel Soengas
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain
| | - Ian Probert
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Emilie Guilloud
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Priscillia Gourvil
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Mohamed Mehiri
- Institut de Chimie de Nice, UMR CNRS 7272, Université Nice Sofia Antopolis, 06103, Nice, France
| | - Yuly López
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Virginio Cepas
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Ignacio Gutiérrez-Del-Río
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Saúl Redondo-Blanco
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Claudio J Villar
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Felipe Lombó
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Sara Soto
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Fernando López Ortiz
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain.
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21
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Aguilera-Sáez LM, Abreu AC, Camacho-Rodríguez J, González-López CV, Del Carmen Cerón-García M, Fernández I. NMR Metabolomics as an Effective Tool To Unravel the Effect of Light Intensity and Temperature on the Composition of the Marine Microalgae Isochrysis galbana. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:3879-3889. [PMID: 30920825 DOI: 10.1021/acs.jafc.8b06840] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
NMR spectroscopy coupled with multivariate data analysis techniques was applied to obtain meaningful information about nontargeted metabolic changes on Isochrysis galbana upon acclimation to different environmental conditions at indoor lab-scale. The effects of temperature (from 15 to 30 °C) and incident irradiance (from 250 to 1600 μmol m-2 s-1) at a constant dilution rate of 0.3 h-1 were evaluated. High irradiances stimulated a decrease of chlorophyll a, fucoxanthin and amino acids content, and the conversion of polar fatty acids (PLs, GLs, DGDGs, SGDGs) to neutral fatty acids (saturated and unsaturated). High temperatures together with high irradiances decreased PUFAs concentration, including omega-3 fatty acids. Under low irradiance and temperature organic osmolytes (homarine, DMSP, GBT, and glycerol), and sugars (glucose, trehalose, and galactose) were also reduced.
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Affiliation(s)
- Luis Manuel Aguilera-Sáez
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
| | - Ana Cristina Abreu
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
| | - Javier Camacho-Rodríguez
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
| | - Cynthia Victoria González-López
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
| | - María Del Carmen Cerón-García
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
| | - Ignacio Fernández
- Department of Chemistry and Physics and Department of Chemical Engineering, Research Centre CIAIMBITAL , University of Almería , Ctra. Sacramento, s/n, 04120 , Almería ( Spain )
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22
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Immunostimulatory Phosphatidylmonogalactosyldiacylglycerols (PGDG) from the Marine Diatom Thalassiosira weissflogii: Inspiration for a Novel Synthetic Toll-Like Receptor 4 Agonist. Mar Drugs 2019; 17:md17020103. [PMID: 30744121 PMCID: PMC6409857 DOI: 10.3390/md17020103] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 02/04/2019] [Accepted: 02/05/2019] [Indexed: 12/16/2022] Open
Abstract
An unprecedented phosphatidylmonogalactosyldiacylglycerol pool (PGDG, 1) rich in polyunsaturated fatty acids was isolated from the marine diatoms Thalassiosira weissflogii. Here we report for the first time the NMR characterization of this rare lipid from marine organisms along with a synthetic strategy for the preparation of a PGDG analog (2). PGDG 1 exhibited immunostimulatory activity in human dendritic cells (DCs) and the synthetic PGDG 2 was prepared to explore its mechanism of action. A Toll-like receptor-4 (TLR-4) agonistic activity was evidenced in human and murine DCs underlying the antigen-specific T-cell activation of this class of molecules.
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23
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Influence of the killing method of the black soldier fly on its lipid composition. Food Res Int 2019; 116:276-282. [DOI: 10.1016/j.foodres.2018.08.033] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Revised: 07/11/2018] [Accepted: 08/12/2018] [Indexed: 12/13/2022]
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24
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13C quantification in heterogeneous multiphase natural samples by CMP-NMR using stepped decoupling. Anal Bioanal Chem 2018; 410:7055-7065. [DOI: 10.1007/s00216-018-1306-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 07/03/2018] [Accepted: 08/03/2018] [Indexed: 01/29/2023]
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25
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Barbosa BS, Martins LG, Costa TBBC, Cruz G, Tasic L. Qualitative and Quantitative NMR Approaches in Blood Serum Lipidomics. Methods Mol Biol 2018; 1735:365-379. [PMID: 29380328 DOI: 10.1007/978-1-4939-7614-0_25] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy in combination with chemometrics can be applied in the analysis of complex biological samples in many ways. For example, we can analyze lipids, elucidate their structures, determine their nutritional values, and determine their distribution in blood serum. As lipids are not soluble in water, they are transported in blood as lipid-rich self-assembled particles, divided into different density assemblies from high- to very-low-density lipoproteins (HDL to VLDL), or by combining with serum proteins, such as albumins (human serum albumins (HSA)). Therefore, serum lipids can be analyzed as they are using only a 1:1 (v/v) dilution with a buffer or deuterated water prior to analysis by applying 1H NMR or 1H NMR edited-by-diffusion techniques. Alternatively, lipids can be extracted from the serum using liquid partition equilibrium and then analyzed using liquid-state NMR techniques. Our chapter describes protocols that are used for extraction of blood serum lipids and their quantitative 1H NMR (1H qNMR) analysis in lipid extracts as well as 1H NMR edited by diffusion for direct blood serum lipid analysis.
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Affiliation(s)
- Banny Silva Barbosa
- Laboratório de Química Biológica, Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Lucas Gelain Martins
- Laboratório de Química Biológica, Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Tássia B B C Costa
- Laboratório de Química Biológica, Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Guilherme Cruz
- Laboratório de Química Biológica, Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Ljubica Tasic
- Laboratório de Química Biológica, Departamento de Química Orgânica, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil.
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Cramer CJ, Johnson JL, Kamel AM. Prediction of Mass Spectral Response Factors from Predicted Chemometric Data for Druglike Molecules. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2017; 28:278-285. [PMID: 27832527 DOI: 10.1007/s13361-016-1536-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Revised: 10/17/2016] [Accepted: 10/18/2016] [Indexed: 06/06/2023]
Abstract
A method is developed for the prediction of mass spectral ion counts of drug-like molecules using in silico calculated chemometric data. Various chemometric data, including polar and molecular surface areas, aqueous solvation free energies, and gas-phase and aqueous proton affinities were computed, and a statistically significant relationship between measured mass spectral ion counts and the combination of aqueous proton affinity and total molecular surface area was identified. In particular, through multilinear regression of ion counts on predicted chemometric data, we find that log10(MS ion counts) = -4.824 + c 1•PA + c 2•SA, where PA is the aqueous proton affinity of the molecule computed at the SMD(aq)/M06-L/MIDI!//M06-L/MIDI! level of electronic structure theory, SA is the total surface area of the molecule in its conjugate base form, and c 1 and c 2 have values of -3.912 × 10-2 mol kcal-1 and 3.682 × 10-3 Å-2. On a 66-molecule training set, this regression exhibits a multiple R value of 0.791 with p values for the intercept, c 1, and c 2 of 1.4 × 10-3, 4.3 × 10-10, and 2.5 × 10-6, respectively. Application of this regression to an 11-molecule test set provides a good correlation of prediction with experiment (R = 0.905) albeit with a systematic underestimation of about 0.2 log units. This method may prove useful for semiquantitative analysis of drug metabolites for which MS response factors or authentic standards are not readily available. Graphical Abstract ᅟ.
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Affiliation(s)
- Christopher J Cramer
- Department of Chemistry, Supercomputing Institute, and Chemical Theory Center, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN, 55455, USA
| | - Joshua L Johnson
- Novartis Institutes for BioMedical Research, Metabolism, and Pharmacokinetics (MAP), 250 Massachusetts Ave., Cambridge, MA, 02139, USA
- Biogen, Drug Metabolism and Pharmacokinetics (DMPK), 125 Broadway, Cambridge, MA, 02142, USA
| | - Amin M Kamel
- Novartis Institutes for BioMedical Research, Metabolism, and Pharmacokinetics (MAP), 250 Massachusetts Ave., Cambridge, MA, 02139, USA.
- Biogen, Drug Metabolism and Pharmacokinetics (DMPK), 125 Broadway, Cambridge, MA, 02142, USA.
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López Del Amo V, Palomino-Schätzlein M, Seco-Cervera M, García-Giménez JL, Pallardó FV, Pineda-Lucena A, Galindo MI. A Drosophila model of GDAP1 function reveals the involvement of insulin signalling in the mitochondria-dependent neuromuscular degeneration. Biochim Biophys Acta Mol Basis Dis 2017; 1863:801-809. [PMID: 28065847 DOI: 10.1016/j.bbadis.2017.01.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 12/13/2016] [Accepted: 01/04/2017] [Indexed: 01/07/2023]
Abstract
Charcot-Marie-Tooth disease is a rare peripheral neuropathy for which there is no specific treatment. Some forms of Charcot-Marie-Tooth are due to mutations in the GDAP1 gene. A striking feature of mutations in GDAP1 is that they have a variable clinical manifestation, according to disease onset and progression, histology and mode of inheritance. Studies in cellular and animal models have revealed a role of GDAP1 in mitochondrial morphology and distribution, calcium homeostasis and oxidative stress. To get a better understanding of the disease mechanism we have generated models of over-expression and RNA interference of the Drosophila Gdap1 gene. In order to get an overview about the changes that Gdap1 mutations cause in our disease model, we have combined a comprehensive determination of the metabolic profile in the flies by nuclear magnetic resonance spectroscopy with gene expression analyses and biophysical tests. Our results revealed that both up- and down-regulation of Gdap1 results in an early systemic inactivation of the insulin pathway before the onset of neuromuscular degeneration, followed by an accumulation of carbohydrates and an increase in the β-oxidation of lipids. Our findings are in line with emerging reports of energy metabolism impairments linked to different types of neural pathologies caused by defective mitochondrial function, which is not surprising given the central role of mitochondria in the control of energy metabolism. The relationship of mitochondrial dynamics with metabolism during neurodegeneration opens new avenues to understand the cause of the disease, and for the discovery of new biomarkers and treatments.
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Affiliation(s)
- Víctor López Del Amo
- Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain; Center for Biomedical Network Research on Rare Diseases (CIBERER), 46012 Valencia, Spain
| | | | - Marta Seco-Cervera
- Center for Biomedical Network Research on Rare Diseases (CIBERER), 46012 Valencia, Spain; Department of Physiology, School of Medicine and Dentistry, Universitat de València, INCLIVA Biomedical Research Institute, 46010 Valencia, Spain
| | - José Luis García-Giménez
- Center for Biomedical Network Research on Rare Diseases (CIBERER), 46012 Valencia, Spain; Department of Physiology, School of Medicine and Dentistry, Universitat de València, INCLIVA Biomedical Research Institute, 46010 Valencia, Spain
| | - Federico Vicente Pallardó
- Center for Biomedical Network Research on Rare Diseases (CIBERER), 46012 Valencia, Spain; Department of Physiology, School of Medicine and Dentistry, Universitat de València, INCLIVA Biomedical Research Institute, 46010 Valencia, Spain
| | - Antonio Pineda-Lucena
- Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain; Drug Discovery Unit, Instituto de Investigación Sanitaria La Fe, 46026 Valencia, Spain
| | - Máximo Ibo Galindo
- Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain; IDM-Institute of Molecular Recognition, Universidad Politécnica de Valencia, 46022 Valencia, Spain; UPV-CIPF Joint Unit Disease Mechanisms and Nanomedicine, Valencia, Spain.
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SARPAL AMARJITSINGH, K. Sharma B, Scott J, kumar R, Sugmaran V, Chopra A, Bansal V, Rajagopalan NK. comparison of oil extraction methods for algae by NMR and Chromatographic techniques. ACTA ACUST UNITED AC 2016. [DOI: 10.15436/2476-1869.16.1166] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Challagulla V, Nayar S, Walsh K, Fabbro L. Advances in techniques for assessment of microalgal lipids. Crit Rev Biotechnol 2016; 37:566-578. [PMID: 27417693 DOI: 10.1080/07388551.2016.1206058] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Microalgae are a varied group of organisms with considerable commercial potential as sources of various biochemicals, storage molecules and metabolites such as lipids, sugars, amino acids, pigments and toxins. Algal lipids can be processed to bio-oils and biodiesel. The conventional method to estimate algal lipids is based on extraction using solvents and quantification by gravimetry or chromatography. Such methods are time consuming, use hazardous chemicals and are labor intensive. For rapid screening of prospective algae or for management decisions (e.g. decision on timing of harvest), a rapid, high throughput, reliable, accurate, cost effective and preferably nondestructive analytical technique is desirable. This manuscript reviews the application of fluorescent lipid soluble dyes (Nile Red and BODIPY 505/515), nuclear magnetic resonance (NMR), Raman, Fourier transform infrared (FTIR) and near infrared (NIR) spectroscopy for the assessment of lipids in microalgae.
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Affiliation(s)
- Vineela Challagulla
- a School of Medical and Applied Sciences , Central Queensland University , Rockhampton , QLD , Australia
| | - Sasi Nayar
- b South Australian Research and Development Institute - Aquatic Sciences , West Beach , South Australia , Australia
| | - Kerry Walsh
- a School of Medical and Applied Sciences , Central Queensland University , Rockhampton , QLD , Australia
| | - Larelle Fabbro
- a School of Medical and Applied Sciences , Central Queensland University , Rockhampton , QLD , Australia
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Cutignano A, Luongo E, Nuzzo G, Pagano D, Manzo E, Sardo A, Fontana A. Profiling of complex lipids in marine microalgae by UHPLC/tandem mass spectrometry. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.05.016] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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NMR techniques for determination of lipid content in microalgal biomass and their use in monitoring the cultivation with biodiesel potential. Appl Microbiol Biotechnol 2015; 100:2471-85. [DOI: 10.1007/s00253-015-7140-x] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Revised: 10/29/2015] [Accepted: 11/03/2015] [Indexed: 12/13/2022]
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Sharma SK, Nelson DR, Abdrabu R, Khraiwesh B, Jijakli K, Arnoux M, O’Connor MJ, Bahmani T, Cai H, Khapli S, Jagannathan R, Salehi-Ashtiani K. An integrative Raman microscopy-based workflow for rapid in situ analysis of microalgal lipid bodies. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:164. [PMID: 26442756 PMCID: PMC4595058 DOI: 10.1186/s13068-015-0349-1] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Accepted: 09/25/2015] [Indexed: 05/24/2023]
Abstract
BACKGROUND Oils and bioproducts extracted from cultivated algae can be used as sustainable feedstock for fuels, nutritional supplements, and other bio-based products. Discovery and isolation of new algal species and their subsequent optimization are needed to achieve economical feasibility for industrial applications. Here we describe and validate a workflow for in situ analysis of algal lipids through confocal Raman microscopy. We demonstrate its effectiveness to characterize lipid content of algal strains isolated from the environment as well as algal cells screened for increased lipid accumulation through UV mutagenesis combined with Fluorescence Activated Cell Sorting (FACS). RESULTS To establish and validate our workflow, we refined an existing Raman platform to obtain better discrimination in chain length and saturation of lipids through ratiometric analyses of mixed fatty acid lipid standards. Raman experiments were performed using two different excitation lasers (λ = 532 and 785 nm), with close agreement observed between values obtained using each laser. Liquid chromatography coupled with mass spectrometry (LC-MS) experiments validated the obtained Raman spectroscopic results. To demonstrate the utility and effectiveness of the improved Raman platform, we carried out bioprospecting for algal species from soil and marine environments in both temperate and subtropical geographies to obtain algal isolates from varied environments. Further, we carried out two rounds of mutagenesis screens on the green algal model species, Chlamydomonas reinhardtii, to obtain cells with increased lipid content. Analyses on both environmental isolates and screened cells were conducted which determined their respective lipids. Different saturation states among the isolates as well as the screened C. reinhardtii strains were observed. The latter indicated the presence of cell-to cell variations among cells grown under identical condition. In contrast, non-mutagenized C. reinhardtii cells showed no significant heterogeneity in lipid content. CONCLUSIONS We demonstrate the utility of confocal Raman microscopy for lipid analysis on novel aquatic and soil microalgal isolates and for characterization of lipid-expressing cells obtained in a mutagenesis screen. Raman microscopy enables quantitative determination of the unsaturation level and chain lengths of microalgal lipids, which are key parameters in selection and engineering of microalgae for optimal production of biofuels.
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Affiliation(s)
- Sudhir Kumar Sharma
- />Division of Engineering, New York University Abu Dhabi, P. O. Box 129188, Abu Dhabi, UAE
| | - David R. Nelson
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- />Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Rasha Abdrabu
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- />Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Basel Khraiwesh
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- />Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Kenan Jijakli
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Marc Arnoux
- />Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Matthew J. O’Connor
- />Core Technology Platform, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Tayebeh Bahmani
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Hong Cai
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
| | - Sachin Khapli
- />Division of Engineering, New York University Abu Dhabi, P. O. Box 129188, Abu Dhabi, UAE
| | - Ramesh Jagannathan
- />Division of Engineering, New York University Abu Dhabi, P. O. Box 129188, Abu Dhabi, UAE
| | - Kourosh Salehi-Ashtiani
- />Laboratory of Algal, Systems, and Synthetic Biology, Division of Science and Math, New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
- />Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, UAE
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Puchades-Carrasco L, Palomino-Schätzlein M, Pérez-Rambla C, Pineda-Lucena A. Bioinformatics tools for the analysis of NMR metabolomics studies focused on the identification of clinically relevant biomarkers. Brief Bioinform 2015; 17:541-52. [PMID: 26342127 DOI: 10.1093/bib/bbv077] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Indexed: 12/29/2022] Open
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Wheeler HL, Soong R, Courtier-Murias D, Botana A, Fortier-Mcgill B, Maas WE, Fey M, Hutchins H, Krishnamurthy S, Kumar R, Monette M, Stronks HJ, Campbell MM, Simpson A. Comprehensive multiphase NMR: a promising technology to study plants in their native state. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:735-744. [PMID: 25855560 DOI: 10.1002/mrc.4230] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 01/27/2015] [Accepted: 01/30/2015] [Indexed: 06/04/2023]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy is arguably one the most powerful tools to study the interactions and molecular structure within plants. Traditionally, however, NMR has developed as two separate fields, one dealing with liquids and the other dealing with solids. Plants in their native state contain components that are soluble, swollen, and true solids. Here, a new form of NMR spectroscopy, developed in 2012, termed comprehensive multiphase (CMP)-NMR is applied for plant analysis. The technology composes all aspects of solution, gel, and solid-state NMR into a single NMR probe such that all components in all phases in native unaltered samples can be studied and differentiated in situ. The technology is evaluated using wild-type Arabidopsis thaliana and the cellulose-deficient mutant ectopic lignification1 (eli1) as examples. Using CMP-NMR to study intact samples eliminated the bias introduced by extraction methods and enabled the acquisition of a more complete structural and metabolic profile; thus, CMP-NMR revealed molecular differences between wild type (WT) and eli1 that could be overlooked by conventional methods. Methanol, fatty acids and/or lipids, glutamine, phenylalanine, starch, and nucleic acids were more abundant in eli1 than in WT. Pentaglycine was present in A. thaliana seedlings and more abundant in eli1 than in WT.
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Affiliation(s)
- Heather L Wheeler
- Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
| | - Ronald Soong
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
- Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Denis Courtier-Murias
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
- Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Adolfo Botana
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
- Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Blythe Fortier-Mcgill
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
- Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario, M5S 3H6, Canada
| | - Werner E Maas
- Bruker Biospin Corporation, 15 Fortune Drive, Billerica, MA, 01821-3991, USA
| | - Michael Fey
- Bruker Biospin Corporation, 15 Fortune Drive, Billerica, MA, 01821-3991, USA
| | - Howard Hutchins
- Bruker Biospin Corporation, 15 Fortune Drive, Billerica, MA, 01821-3991, USA
| | | | - Rajeev Kumar
- Bruker Ltd. Canada, 555 Steeles Avenue East, Milton, Ontario, L9T 1Y6, Canada
| | - Martine Monette
- Bruker Ltd. Canada, 555 Steeles Avenue East, Milton, Ontario, L9T 1Y6, Canada
| | - Henry J Stronks
- Bruker Ltd. Canada, 555 Steeles Avenue East, Milton, Ontario, L9T 1Y6, Canada
| | - Malcolm M Campbell
- Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
| | - Andre Simpson
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, M1C 1A4, Canada
- Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario, M5S 3H6, Canada
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35
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Determination of lipid content of oleaginous microalgal biomass by NMR spectroscopic and GC–MS techniques. Anal Bioanal Chem 2015; 407:3799-816. [DOI: 10.1007/s00216-015-8613-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Revised: 01/22/2015] [Accepted: 03/03/2015] [Indexed: 11/26/2022]
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d’Ippolito G, Sardo A, Paris D, Vella FM, Adelfi MG, Botte P, Gallo C, Fontana A. Potential of lipid metabolism in marine diatoms for biofuel production. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:28. [PMID: 25763104 PMCID: PMC4355990 DOI: 10.1186/s13068-015-0212-4] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2014] [Accepted: 01/26/2015] [Indexed: 05/04/2023]
Abstract
BACKGROUND Diatoms are an ecologically relevant group of microalgae that are not commonly considered for bio-oil production even if they are responsible for massive blooms at sea. Seventeen diatom species were screened for their capacity to produce biomass and lipids, in relation to their growth rate. Triglyceride levels were also assessed as a preferential source of biofuels. RESULTS Using statistical analysis, two centric diatoms, Thalassiosira weissflogii and Cyclotella cryptica, were selected as good candidates for oil production. Lipid levels significantly increased when the two diatoms were cultivated in a two-stage process under nitrogen limitation. The effect was less pronounced in cultures where silicon was reduced to 20% of the standard supply. Nitrogen limitation did not affect growth rates but led to lipid remodeling and de novo synthesis of triacylglycerols. CONCLUSIONS Triacylglycerols in T. weissflogii and C. cryptica can account for up to 82% and 88% of total glycerolipids, thereby suggesting that the two species are promising candidates for large-scale experimentation for biofuel production.
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Affiliation(s)
- Giuliana d’Ippolito
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Angela Sardo
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Debora Paris
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Filomena Monica Vella
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Maria Grazia Adelfi
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Pierpaolo Botte
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Carmela Gallo
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Angelo Fontana
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
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Monakhova YB, Kohl-Himmelseher M, Kuballa T, Lachenmeier DW. Determination of the purity of pharmaceutical reference materials by 1H NMR using the standardless PULCON methodology. J Pharm Biomed Anal 2014; 100:381-386. [PMID: 25215441 DOI: 10.1016/j.jpba.2014.08.024] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 08/14/2014] [Accepted: 08/18/2014] [Indexed: 10/24/2022]
Abstract
A fast and reliable nuclear magnetic resonance spectroscopic method for quantitative determination (qNMR) of targeted molecules in reference materials has been established using the ERETIC2 methodology (electronic reference to access in vivo concentrations) based on the PULCON principle (pulse length based concentration determination). The developed approach was validated for the analysis of pharmaceutical samples in the context of official medicines control, including ibandronic acid, amantadine, ambroxol and lercanidipine. The PULCON recoveries were above 94.3% and coefficients of variation (CVs) obtained by quantification of different targeted resonances ranged between 0.7% and 2.8%, demonstrating that the qNMR method is a precise tool for rapid quantification (approximately 15min) of reference materials and medicinal products. Generally, the values were within specification (certified values) provided by the manufactures. The results were in agreement with NMR quantification using an internal standard and validated reference HPLC analysis. The PULCON method was found to be a practical alternative with competitive precision and accuracy to the classical internal reference method and it proved to be applicable to different solvent conditions. The method can be recommended for routine use in medicines control laboratories, especially when the availability and costs of reference compounds are problematic.
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Affiliation(s)
- Yulia B Monakhova
- Chemisches und Veterinäruntersuchungsamt (CVUA) Karlsruhe, Weissenburger Strasse 3, 76187 Karlsruhe, Germany; Bruker Biospin GmbH, Silberstreifen, 76287 Rheinstetten, Germany; Institute of Chemistry, Saratov State University, Astrakhanskaya Street 83, 410012 Saratov, Russia
| | - Matthias Kohl-Himmelseher
- Chemisches und Veterinäruntersuchungsamt (CVUA) Karlsruhe, Weissenburger Strasse 3, 76187 Karlsruhe, Germany
| | - Thomas Kuballa
- Chemisches und Veterinäruntersuchungsamt (CVUA) Karlsruhe, Weissenburger Strasse 3, 76187 Karlsruhe, Germany
| | - Dirk W Lachenmeier
- Chemisches und Veterinäruntersuchungsamt (CVUA) Karlsruhe, Weissenburger Strasse 3, 76187 Karlsruhe, Germany.
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