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For: Bromke MA. Amino Acid biosynthesis pathways in diatoms. Metabolites 2013;3:294-311. [PMID: 24957993 DOI: 10.3390/metabo3020294] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Revised: 04/04/2013] [Accepted: 04/08/2013] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Shi J, Hu M, Xia Z, Zhang J, Wang Z, Li L, Zhao Y. Influence of perfluoroalkyl substances, with focus on perfluorobutanoic acid on the responding characteristics and molecular mechanisms of Thalassiosira pseudonana. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;285:117048. [PMID: 39288731 DOI: 10.1016/j.ecoenv.2024.117048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 09/08/2024] [Accepted: 09/12/2024] [Indexed: 09/19/2024]
2
Dorrell RG, Zhang Y, Liang Y, Gueguen N, Nonoyama T, Croteau D, Penot-Raquin M, Adiba S, Bailleul B, Gros V, Pierella Karlusich JJ, Zweig N, Fernie AR, Jouhet J, Maréchal E, Bowler C. Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid. THE PLANT CELL 2024;36:3584-3610. [PMID: 38842420 PMCID: PMC11371179 DOI: 10.1093/plcell/koae168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/14/2024] [Accepted: 05/30/2024] [Indexed: 06/07/2024]
3
Liu Y, Tian C, Yang Z, Huang C, Jiao K, Yang L, Duan C, Zhang Z, Li G. Effects of Chronic Heat Stress on Growth, Apoptosis, Antioxidant Enzymes, Transcriptomic Profiles, and Immune-Related Genes of Hong Kong Catfish (Clarias fuscus). Animals (Basel) 2024;14:1006. [PMID: 38612245 PMCID: PMC11010891 DOI: 10.3390/ani14071006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 03/14/2024] [Accepted: 03/19/2024] [Indexed: 04/14/2024]  Open
4
Santos JP, Li W, Keller AA, Slaveykova VI. Mercury species induce metabolic reprogramming in freshwater diatom Cyclotella meneghiniana. JOURNAL OF HAZARDOUS MATERIALS 2024;465:133245. [PMID: 38150761 DOI: 10.1016/j.jhazmat.2023.133245] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 12/06/2023] [Accepted: 12/10/2023] [Indexed: 12/29/2023]
5
Schoenmakers LLJ, Reydon TAC, Kirschning A. Evolution at the Origins of Life? Life (Basel) 2024;14:175. [PMID: 38398684 PMCID: PMC10890241 DOI: 10.3390/life14020175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 01/19/2024] [Accepted: 01/23/2024] [Indexed: 02/25/2024]  Open
6
Wang M, Chen S, Li S, Zhang J, Sun Y, Wang C, Ni D. Enhancement of nitrogen cycling and functional microbial flora by artificial inoculation of biological soil crusts in sandy soils of highway slopes. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024;31:4400-4411. [PMID: 38102430 DOI: 10.1007/s11356-023-31461-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 12/06/2023] [Indexed: 12/17/2023]
7
Zhang S, Zhao B, Zhang X, Wu F, Zhao Q. The Metabolomics Response of Solanum melongena L. Leaves to Various Forms of Pb. NANOMATERIALS (BASEL, SWITZERLAND) 2023;13:2911. [PMID: 37999265 PMCID: PMC10675538 DOI: 10.3390/nano13222911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 09/30/2023] [Accepted: 10/02/2023] [Indexed: 11/25/2023]
8
Naz S, Liu P, Farooq U, Ma H. Insight into de-regulation of amino acid feedback inhibition: a focus on structure analysis method. Microb Cell Fact 2023;22:161. [PMID: 37612753 PMCID: PMC10464499 DOI: 10.1186/s12934-023-02178-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 08/13/2023] [Indexed: 08/25/2023]  Open
9
Zhao S, Zhao X, Li Y, Zhang R, Zhao Y, Fang H, Li W. Impact of altered groundwater depth on soil microbial diversity, network complexity and multifunctionality. Front Microbiol 2023;14:1214186. [PMID: 37601343 PMCID: PMC10434790 DOI: 10.3389/fmicb.2023.1214186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Accepted: 07/12/2023] [Indexed: 08/22/2023]  Open
10
Kabir MA, Iqbal MM, Nandi SK, Khanam M, Sumon MAA, Tahiluddin AB, Kari ZA, Wei LS, Téllez-Isaías G. Comparative study of ovarian development in wild and captive-reared long-whiskered Sperata aor (Hamilton, 1822). BMC ZOOL 2023;8:10. [PMID: 37488631 PMCID: PMC10364359 DOI: 10.1186/s40850-023-00172-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 07/13/2023] [Indexed: 07/26/2023]  Open
11
Feltracco M, Zangrando R, Barbaro E, Becagli S, Park KT, Vecchiato M, Caiazzo L, Traversi R, Severi M, Barbante C, Gambaro A. Characterization of free L- and D-amino acids in size-segregated background aerosols over the Ross Sea, Antarctica. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;879:163070. [PMID: 36990237 DOI: 10.1016/j.scitotenv.2023.163070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/10/2023] [Accepted: 03/22/2023] [Indexed: 05/17/2023]
12
Liu Y, Ma C, Sun J. Integrated FT-ICR MS and metabolome reveals diatom-derived organic matter by bacterial transformation under warming and acidification. iScience 2023;26:106812. [PMID: 37213222 PMCID: PMC10197009 DOI: 10.1016/j.isci.2023.106812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 02/21/2023] [Accepted: 05/01/2023] [Indexed: 05/23/2023]  Open
13
Mecha E, Alves ML, Bento da Silva A, Pereira AB, Rubiales D, Vaz Patto MC, Bronze MR. High Inter- and Intra- Diversity of Amino Acid Content and Protein Digestibility Disclosed in Five Cool Season Legume Species with a Growing Market Demand. Foods 2023;12:foods12071383. [PMID: 37048201 PMCID: PMC10093753 DOI: 10.3390/foods12071383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Revised: 03/15/2023] [Accepted: 03/22/2023] [Indexed: 04/14/2023]  Open
14
Hano T, Tomaru Y. Chronological age-related metabolome responses in the dinoflagellate Karenia mikimotoi, can predict future bloom demise. Commun Biol 2023;6:273. [PMID: 36922623 PMCID: PMC10017670 DOI: 10.1038/s42003-023-04646-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 03/01/2023] [Indexed: 03/18/2023]  Open
15
Velička A, Tarasevičienė Ž, Hallmann E, Kieltyka-Dadasiewicz A. Impact of Foliar Application of Amino Acids on Essential Oil Content, Odor Profile, and Flavonoid Content of Different Mint Varieties in Field Conditions. PLANTS (BASEL, SWITZERLAND) 2022;11:plants11212938. [PMID: 36365392 PMCID: PMC9731322 DOI: 10.3390/plants11212938] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/17/2022] [Accepted: 10/25/2022] [Indexed: 05/31/2023]
16
Kirschning A. On the Evolutionary History of the Twenty Encoded Amino Acids. Chemistry 2022;28:e202201419. [PMID: 35726786 PMCID: PMC9796705 DOI: 10.1002/chem.202201419] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Indexed: 01/07/2023]
17
Kong W, Wei X, Wu Y, Shao M, Zhang Q, Sadowsky MJ, Ishii S, Reich PB, Wei G, Jiao S, Qiu L, Liu L. Afforestation can lower microbial diversity and functionality in deep soil layers in a semiarid region. GLOBAL CHANGE BIOLOGY 2022;28:6086-6101. [PMID: 35808859 DOI: 10.1111/gcb.16334] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
18
Du Z, Lin W, Zhu J, Li J. Amino acids profiling and transcriptomic data integration demonstrates the dynamic regulation of amino acids synthesis in the leaves of Cyclocarya paliurus. PeerJ 2022;10:e13689. [PMID: 35811808 PMCID: PMC9266588 DOI: 10.7717/peerj.13689] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 06/16/2022] [Indexed: 01/17/2023]  Open
19
Zhang M, Li Y, Mu Q, Feng F, Yu X, Ge J, Zhang Y, Nie J. Effects of chlorpyrifos on the metabolic profiling of Bacillus megaterium strain RRB. CHEMOSPHERE 2022;297:134189. [PMID: 35248589 DOI: 10.1016/j.chemosphere.2022.134189] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 02/12/2022] [Accepted: 03/01/2022] [Indexed: 06/14/2023]
20
Jiménez-Gómez I, Valdés-Muñoz G, Moreno-Ulloa A, Pérez-Llano Y, Moreno-Perlín T, Silva-Jiménez H, Barreto-Curiel F, Sánchez-Carbente MDR, Folch-Mallol JL, Gunde-Cimerman N, Lago-Lestón A, Batista-García RA. Surviving in the Brine: A Multi-Omics Approach for Understanding the Physiology of the Halophile Fungus Aspergillus sydowii at Saturated NaCl Concentration. Front Microbiol 2022;13:840408. [PMID: 35586858 PMCID: PMC9108488 DOI: 10.3389/fmicb.2022.840408] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 04/07/2022] [Indexed: 11/30/2022]  Open
21
An F, Niu Z, Liu T, Su Y. Succession of soil bacterial community along a 46-year choronsequence artificial revegetation in an arid oasis-desert ecotone. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;814:152496. [PMID: 34968610 DOI: 10.1016/j.scitotenv.2021.152496] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Revised: 12/12/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
22
Duncan RJ, Nielsen DA, Sheehan CE, Deppeler S, Hancock AM, Schulz KG, Davidson AT, Petrou K. Ocean acidification alters the nutritional value of Antarctic diatoms. THE NEW PHYTOLOGIST 2022;233:1813-1827. [PMID: 34988987 DOI: 10.1111/nph.17868] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 11/07/2021] [Indexed: 06/14/2023]
23
Biochemical Mapping of Pyrodinium bahamense Unveils Molecular Underpinnings behind Organismal Processes. Int J Mol Sci 2021;22:ijms222413332. [PMID: 34948131 PMCID: PMC8706660 DOI: 10.3390/ijms222413332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 12/01/2021] [Accepted: 12/02/2021] [Indexed: 11/17/2022]  Open
24
Afforestation with Pinus sylvestris var. mongolica remodelled soil bacterial community and potential metabolic function in the Horqin Desert. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]  Open
25
Ramirez MD, Besser AC, Newsome SD, McMahon KW. Meta‐analysis of primary producer amino acid δ 15 N values and their influence on trophic position estimation. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13678] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Toplis B, Bosch C, Schwartz IS, Kenyon C, Boekhout T, Perfect JR, Botha A. The virulence factor urease and its unexplored role in the metabolism of Cryptococcus neoformans. FEMS Yeast Res 2021;20:5850754. [PMID: 32490521 DOI: 10.1093/femsyr/foaa031] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 06/01/2020] [Indexed: 12/25/2022]  Open
27
Li J, Pan K, Tang X, Li Y, Zhu B, Zhao Y. The molecular mechanisms of Chlorella sp. responding to high CO2: A study based on comparative transcriptome analysis between strains with high- and low-CO2 tolerance. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;763:144185. [PMID: 33383507 DOI: 10.1016/j.scitotenv.2020.144185] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 11/28/2020] [Accepted: 11/30/2020] [Indexed: 05/28/2023]
28
Slaveykova VI, Majumdar S, Regier N, Li W, Keller AA. Metabolomic Responses of Green Alga Chlamydomonas reinhardtii Exposed to Sublethal Concentrations of Inorganic and Methylmercury. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021;55:3876-3887. [PMID: 33631933 DOI: 10.1021/acs.est.0c08416] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
29
Li N, Liu Y, Liang Z, Lou Y, Liu Y, Zhao X, Wang G. Influence of fuel oil on Platymonas helgolandica: An acute toxicity evaluation to amino acids. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021;271:116226. [PMID: 33360349 DOI: 10.1016/j.envpol.2020.116226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 11/16/2020] [Accepted: 12/03/2020] [Indexed: 06/12/2023]
30
Revisiting nitrogen utilization in algae: A review on the process of regulation and assimilation. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.biteb.2020.100584] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
31
Metabolomics for early detection of stress in freshwater alga Poterioochromonas malhamensis exposed to silver nanoparticles. Sci Rep 2020;10:20563. [PMID: 33239722 PMCID: PMC7689461 DOI: 10.1038/s41598-020-77521-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 11/12/2020] [Indexed: 12/13/2022]  Open
32
Kuhlisch C, Althammer J, Sazhin AF, Jakobsen HH, Nejstgaard JC, Pohnert G. Metabolomics-derived marker metabolites to characterize Phaeocystis pouchetii physiology in natural plankton communities. Sci Rep 2020;10:20444. [PMID: 33235278 PMCID: PMC7686483 DOI: 10.1038/s41598-020-77169-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 10/28/2020] [Indexed: 01/07/2023]  Open
33
Thangaraj S, Sun J. Transcriptomic reprogramming of the oceanic diatom Skeletonema dohrnii under warming ocean and acidification. Environ Microbiol 2020;23:980-995. [PMID: 32975013 DOI: 10.1111/1462-2920.15248] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 09/14/2020] [Accepted: 09/20/2020] [Indexed: 12/19/2022]
34
Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis. Genes (Basel) 2020;11:genes11070794. [PMID: 32674507 PMCID: PMC7397307 DOI: 10.3390/genes11070794] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 06/22/2020] [Accepted: 07/08/2020] [Indexed: 12/19/2022]  Open
35
Seo S, Kim J, Lee JW, Nam O, Chang KS, Jin E. Enhanced pyruvate metabolism in plastids by overexpression of putative plastidial pyruvate transporter in Phaeodactylum tricornutum. BIOTECHNOLOGY FOR BIOFUELS 2020;13:120. [PMID: 32670407 PMCID: PMC7350735 DOI: 10.1186/s13068-020-01760-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 07/02/2020] [Indexed: 05/10/2023]
36
The Biotechnological Potential of the Marine Diatom Skeletonema dohrnii to the Elevated Temperature and pCO2 Concentration. Mar Drugs 2020;18:md18050259. [PMID: 32429035 PMCID: PMC7281586 DOI: 10.3390/md18050259] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 05/07/2020] [Accepted: 05/12/2020] [Indexed: 11/17/2022]  Open
37
Butenko A, Opperdoes FR, Flegontova O, Horák A, Hampl V, Keeling P, Gawryluk RMR, Tikhonenkov D, Flegontov P, Lukeš J. Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids. BMC Biol 2020;18:23. [PMID: 32122335 PMCID: PMC7052976 DOI: 10.1186/s12915-020-0754-1] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 02/17/2020] [Indexed: 12/24/2022]  Open
38
Bjerkelund Røkke G, Hohmann-Marriott MF, Almaas E. An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLoS One 2020;15:e0229408. [PMID: 32092117 PMCID: PMC7039451 DOI: 10.1371/journal.pone.0229408] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Accepted: 02/05/2020] [Indexed: 01/25/2023]  Open
39
Pan Y, Hu F, Yu C, Li C, Huang T, Hu H. Amino Acid Catabolism During Nitrogen Limitation in Phaeodactylum tricornutum. FRONTIERS IN PLANT SCIENCE 2020;11:589026. [PMID: 33408729 PMCID: PMC7780933 DOI: 10.3389/fpls.2020.589026] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 11/23/2020] [Indexed: 05/08/2023]
40
Ait-Mohamed O, Novák Vanclová AMG, Joli N, Liang Y, Zhao X, Genovesio A, Tirichine L, Bowler C, Dorrell RG. PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum. FRONTIERS IN PLANT SCIENCE 2020;11:590949. [PMID: 33178253 PMCID: PMC7596299 DOI: 10.3389/fpls.2020.590949] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 09/15/2020] [Indexed: 05/04/2023]
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Ryu KH, Kim B, Heo S, Chang YK, Lee JH. Mathematical Modeling of Microalgal Internal Metabolic Behaviors under Heterotrophic Conditions and Its Application. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b05948] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Zhu J, Yang Y, Duan S, Sun D. The Antialgal Mechanism of Luteolin-7-O-Glucuronide on Phaeocystis globosa by Metabolomics Analysis. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019;16:E3222. [PMID: 31484378 PMCID: PMC6747131 DOI: 10.3390/ijerph16173222] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2019] [Revised: 09/01/2019] [Accepted: 09/02/2019] [Indexed: 11/22/2022]
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Hano T, Tomaru Y. Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J Chromatogr B Analyt Technol Biomed Life Sci 2019;1128:121779. [PMID: 31499295 DOI: 10.1016/j.jchromb.2019.121779] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 06/17/2019] [Accepted: 08/26/2019] [Indexed: 01/21/2023]
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Cirri E, De Decker S, Bilcke G, Werner M, Osuna-Cruz CM, De Veylder L, Vandepoele K, Werz O, Vyverman W, Pohnert G. Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom. Front Microbiol 2019;10:1790. [PMID: 31428077 PMCID: PMC6688387 DOI: 10.3389/fmicb.2019.01790] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 07/19/2019] [Indexed: 01/23/2023]  Open
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Metabolic Innovations Underpinning the Origin and Diversification of the Diatom Chloroplast. Biomolecules 2019;9:biom9080322. [PMID: 31366180 PMCID: PMC6723447 DOI: 10.3390/biom9080322] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 07/24/2019] [Accepted: 07/25/2019] [Indexed: 12/13/2022]  Open
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Füssy Z, Faitová T, Oborník M. Subcellular Compartments Interplay for Carbon and Nitrogen Allocation in Chromera velia and Vitrella brassicaformis. Genome Biol Evol 2019;11:1765-1779. [PMID: 31192348 PMCID: PMC6668581 DOI: 10.1093/gbe/evz123] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/10/2019] [Indexed: 12/20/2022]  Open
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L-tryptophan affects the essential oil of navel orange under various growing regions. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2019.101181] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Fernandes BS, Dias O, Costa G, Kaupert Neto AA, Resende TFC, Oliveira JVC, Riaño-Pachón DM, Zaiat M, Pradella JGC, Rocha I. Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production. BMC Biotechnol 2019;19:41. [PMID: 31253157 PMCID: PMC6598237 DOI: 10.1186/s12896-019-0529-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Accepted: 05/28/2019] [Indexed: 11/10/2022]  Open
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Feltracco M, Barbaro E, Kirchgeorg T, Spolaor A, Turetta C, Zangrando R, Barbante C, Gambaro A. Free and combined L- and D-amino acids in Arctic aerosol. CHEMOSPHERE 2019;220:412-421. [PMID: 30597360 DOI: 10.1016/j.chemosphere.2018.12.147] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 12/19/2018] [Accepted: 12/20/2018] [Indexed: 06/09/2023]
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Ryu KH, Sung M, Kim B, Heo S, Chang YK, Lee JH. A mathematical model of intracellular behavior of microalgae for predicting growth and intracellular components syntheses under nutrient‐replete and ‐deplete conditions. Biotechnol Bioeng 2018;115:2441-2455. [DOI: 10.1002/bit.26744] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2018] [Revised: 05/13/2018] [Accepted: 06/05/2018] [Indexed: 11/09/2022]
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