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Santos JP, Li W, Keller AA, Slaveykova VI. Mercury species induce metabolic reprogramming in freshwater diatom Cyclotella meneghiniana. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133245. [PMID: 38150761 DOI: 10.1016/j.jhazmat.2023.133245] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 12/06/2023] [Accepted: 12/10/2023] [Indexed: 12/29/2023]
Abstract
Mercury is a hazardous pollutant of global concern. While advances have been made in identifying the detrimental effects caused by Hg species in phytoplankton, knowledge gaps remain regarding the metabolomic perturbations induced by inorganic mercury (Hg(II)) and monomethylmercury (MeHg) in these organisms. Diatoms represent a major phytoplankton group essential in various global biogeochemical cycles. The current study combined targeted metabolomics, bioaccumulation, and physiological response assays to investigate metabolic perturbations in diatom Cyclotella meneghiniana exposed for 2 h to nanomolar concentrations of Hg(II) and MeHg. Our findings highlight that such exposures induce reprogramming of the metabolism of amino acids, nucleotides, fatty acids, carboxylic acids and antioxidants. These alterations were primarily mercury-species dependent. MeHg exposure induced more pronounced reprogramming of the metabolism of diatoms than Hg(II), which led to less pronounced effects on ROS generation, membrane permeability and chlorophyll concentrations. Hg(II) treatments presented distinct physiological responses, with more robust metabolic perturbations at higher exposures. The present study provides first-time insights into the main metabolic alterations in diatom C. meneghiniana during short-term exposure to Hg species, deepening our understanding of the molecular basis of these perturbations.
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Affiliation(s)
- João P Santos
- University of Geneva, Faculty of Sciences, Earth and Environment Sciences, Department F.-A. Forel for Environmental and Aquatic Sciences, Environmental Biogeochemistry and Ecotoxicology, 66 Blvd Carl-Vogt, CH 1211 Geneva, Switzerland.
| | - Weiwei Li
- Bren School of Environmental Science & Management, University of California, Santa Barbara, CA 93106-5131, United States
| | - Arturo A Keller
- Bren School of Environmental Science & Management, University of California, Santa Barbara, CA 93106-5131, United States
| | - Vera I Slaveykova
- University of Geneva, Faculty of Sciences, Earth and Environment Sciences, Department F.-A. Forel for Environmental and Aquatic Sciences, Environmental Biogeochemistry and Ecotoxicology, 66 Blvd Carl-Vogt, CH 1211 Geneva, Switzerland.
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Panahi B, Farhadian M, Hosseinzadeh Gharajeh N, Mohammadi SA, Hejazi MA. Meta-analysis of transcriptomic profiles in Dunaliella tertiolecta reveals molecular pathway responses to different abiotic stresses. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP23002. [PMID: 38388445 DOI: 10.1071/fp23002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 02/04/2024] [Indexed: 02/24/2024]
Abstract
Microalgae are photosynthetic organisms and a potential source of sustainable metabolite production. However, different stress conditions might affect the production of various metabolites. In this study, a meta-analysis of RNA-seq experiments in Dunaliella tertiolecta was evaluated to compare metabolite biosynthesis pathways in response to abiotic stress conditions such as high light, nitrogen deficiency and high salinity. Results showed downregulation of light reaction, photorespiration, tetrapyrrole and lipid-related pathways occurred under salt stress. Nitrogen deficiency mostly induced the microalgal responses of light reaction and photorespiration metabolism. Phosphoenol pyruvate carboxylase, phosphoglucose isomerase, bisphosphoglycerate mutase and glucose-6-phosphate-1-dehydrogenase (involved in central carbon metabolism) were commonly upregulated under salt, light and nitrogen stresses. Interestingly, the results indicated that the meta-genes (modules of genes strongly correlated) were located in a hub of stress-specific protein-protein interaction (PPI) network. Module enrichment of meta-genes PPI networks highlighted the cross-talk between photosynthesis, fatty acids, starch and sucrose metabolism under multiple stress conditions. Moreover, it was observed that the coordinated expression of the tetrapyrrole intermediated with meta-genes was involved in starch biosynthesis. Our results also showed that the pathways of vitamin B6 metabolism, methane metabolism, ribosome biogenesis and folate biosynthesis responded specifically to different stress factors. Since the results of this study revealed the main pathways underlying the abiotic stress, they might be applied in optimised metabolite production by the microalga Dunaliella in future studies. PRISMA check list was also included in the study.
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Affiliation(s)
- Bahman Panahi
- Department of Genomics, Branch for Northwest & West Region, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research, Education and Extension Organization (AREEO), Tabriz, Iran
| | - Mohammad Farhadian
- Department of Neurology, School of Medicine, Technical University of Munich, Munich, Germany
| | | | | | - Mohammad Amin Hejazi
- Department of Food Biotechnology, Branch for Northwest & West Region, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research, Education and Extension Organization (AREEO), Tabriz, Iran
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Leyland B, Novichkova E, Dolui AK, Jallet D, Daboussi F, Legeret B, Li Z, Li-Beisson Y, Boussiba S, Khozin-Goldberg I. Acyl-CoA binding protein is required for lipid droplet degradation in the diatom Phaeodactylum tricornutum. PLANT PHYSIOLOGY 2024; 194:958-981. [PMID: 37801606 DOI: 10.1093/plphys/kiad525] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 06/28/2023] [Accepted: 07/15/2023] [Indexed: 10/08/2023]
Abstract
Diatoms (Bacillariophyceae) accumulate neutral storage lipids in lipid droplets during stress conditions, which can be rapidly degraded and recycled when optimal conditions resume. Since nutrient and light availability fluctuate in marine environments, storage lipid turnover is essential for diatom dominance of marine ecosystems. Diatoms have garnered attention for their potential to provide a sustainable source of omega-3 fatty acids. Several independent proteomic studies of lipid droplets isolated from the model oleaginous pennate diatom Phaeodactylum tricornutum have identified a previously uncharacterized protein with an acyl-CoA binding (ACB) domain, Phatrdraft_48778, here referred to as Phaeodactylum tricornutum acyl-CoA binding protein (PtACBP). We report the phenotypic effects of CRISPR-Cas9 targeted genome editing of PtACBP. ptacbp mutants were defective in lipid droplet and triacylglycerol degradation, as well as lipid and eicosapentaenoic acid synthesis, during recovery from nitrogen starvation. Transcription of genes responsible for peroxisomal β-oxidation, triacylglycerol lipolysis, and eicosapentaenoic acid synthesis was inhibited. A lipid-binding assay using a synthetic ACB domain from PtACBP indicated preferential binding specificity toward certain polar lipids. PtACBP fused to eGFP displayed an endomembrane-like pattern, which surrounded the periphery of lipid droplets. PtACBP is likely responsible for intracellular acyl transport, affecting cell division, development, photosynthesis, and stress response. A deeper understanding of the molecular mechanisms governing storage lipid turnover will be crucial for developing diatoms and other microalgae as biotechnological cell factories.
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Affiliation(s)
- Ben Leyland
- The Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boker Campus 84990, Israel
| | - Ekaterina Novichkova
- The Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boker Campus 84990, Israel
| | - Achintya Kumar Dolui
- The Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boker Campus 84990, Israel
| | - Denis Jallet
- Toulouse Biotechnology Institute Bio & Chemical Engineering, Institut National de la Recherche Agronomique, Institute National Des Sciences Appliquees, Le Centre national de la recherche scientifique, Toulouse 31077, France
| | - Fayza Daboussi
- Toulouse Biotechnology Institute Bio & Chemical Engineering, Institut National de la Recherche Agronomique, Institute National Des Sciences Appliquees, Le Centre national de la recherche scientifique, Toulouse 31077, France
| | - Bertrand Legeret
- Aix-Marseille University, CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint Paul-Lez-Durance 13108, France
| | - Zhongze Li
- Aix-Marseille University, CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint Paul-Lez-Durance 13108, France
| | - Yonghua Li-Beisson
- Aix-Marseille University, CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Saint Paul-Lez-Durance 13108, France
| | - Sammy Boussiba
- The Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boker Campus 84990, Israel
| | - Inna Khozin-Goldberg
- The Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boker Campus 84990, Israel
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Wu X, Tong Y, Li T, Guo J, Liu W, Mo J. Metabolomic Response of Thalassiosira weissflogii to Erythromycin Stress: Detoxification Systems, Steroidal Metabolites, and Energy Metabolism. PLANTS (BASEL, SWITZERLAND) 2024; 13:354. [PMID: 38337887 PMCID: PMC10856835 DOI: 10.3390/plants13030354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 12/26/2023] [Accepted: 12/27/2023] [Indexed: 02/12/2024]
Abstract
Erythromycin, a macrolide antibiotic, is a prioritized pollutant that poses a high risk to environmental health. It has been detected in different environmental matrices and can cause undesired effects in aquatic organisms, particularly freshwater algae, which are primary producers. However, the impact of erythromycin on marine algae remains largely unexplored. Erythromycin has been reported to induce hormetic effects in the marine diatom Thalassiosira weissflogii (T. weissflogii). These effects are associated with the molecular pathways and biological processes of ribosome assembly, protein translation, photosynthesis, and oxidative stress. However, the alterations in the global gene expression have yet to be validated at the metabolic level. The present study used non-targeted metabolomic analysis to reveal the altered metabolic profiles of T. weissflogii under erythromycin stress. The results showed that the increased cell density was possibly attributed to the accumulation of steroidal compounds with potential hormonic action at the metabolic level. Additionally, slight increases in the mitochondrial membrane potential (MMP) and viable cells were observed in the treatment of 0.001 mg/L of erythromycin (an environmentally realistic level). Contrarily, the 0.75 and 2.5 mg/L erythromycin treatments (corresponding to EC20 and EC50, respectively) showed decreases in the MMP, cell density, and viable algal cells, which were associated with modified metabolic pathways involving ATP-binding cassette (ABC) transporters, the metabolism of hydrocarbons and lipids, thiamine metabolism, and the metabolism of porphyrin and chlorophyll. These findings suggest that metabolomic analysis, as a complement to the measurement of apical endpoints, could provide novel insights into the molecular mechanisms of hormesis induced by antibiotic agents in algae.
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Affiliation(s)
- Xintong Wu
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China (W.L.)
| | - Yongqi Tong
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China (W.L.)
| | - Tong Li
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China (W.L.)
| | - Jiahua Guo
- Shaanxi Key Laboratory of Earth Surface System and Environmental Carrying Capacity, Northwest University, Xi’an 710127, China;
| | - Wenhua Liu
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China (W.L.)
| | - Jiezhang Mo
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou 515063, China (W.L.)
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Gorman D, Beale DJ, Crosswell J, Stephenson SA, Shah RM, Hillyer KE, Steven ADL. Multiple-biomarkers show the importance of blue carbon to commercially important fishery species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 881:163162. [PMID: 37030372 DOI: 10.1016/j.scitotenv.2023.163162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 03/24/2023] [Accepted: 03/26/2023] [Indexed: 06/01/2023]
Abstract
Coastal blue carbon ecosystems (BCE) support nearshore food webs and provide habitat for many commercially important fish and crustacean species. However, the complex links between catchment vegetation and the carbon food-base of estuarine systems are difficult to disern. We employed a multi-biomarker approach (stable isotope ratios - δ13C and δ15N, fatty acid trophic markers - FATMs and metabolomics - central carbon metabolism metabolites) to test links between estuarine vegetation and the food sources available to commercially important crabs and fish occurring within the river systems of the near-pristine eastern coastline of the Gulf of Carpentaria, Australia. Stable isotope analysis confirmed the dietary importance of fringing macrophytes to consumer diet, but showed that this is modulated by their dominance along the riverbank. FATMs indicative of specific food sources further confirmed the differences among upper intertidal macrophytes (driven by concentrations of 16: 1ω7, 18:1ω9, 18:2ω6, 18:3ω3 & 22.0) and seagrass (driven by 18:2ω6, 18:3ω3). These dietary patterns were also reflected in the concentration of central carbon metabolism metabolites. Overall, our study demonstrates the congruence of different biomarker approaches to resolve biochemical links between blue carbon ecosystems and important nekton species, and provides fresh insights into the pristine tropical estuaries of northern Australia.
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Affiliation(s)
- Daniel Gorman
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Indian Ocean Marine Research Centre, Crawley, Australia.
| | - David J Beale
- CSIRO, Ecoscience Precinct, Dutton Park, QLD, Australia
| | | | | | - Rohan M Shah
- CSIRO, Ecoscience Precinct, Dutton Park, QLD, Australia
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Mesquita AF, Jesus F, Gonçalves FJM, Gonçalves AMM. Ecotoxicological and biochemical effects of a binary mixture of pesticides on the marine diatom Thalassiosira weissflogii in a scenario of global warming. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 876:162737. [PMID: 36907391 DOI: 10.1016/j.scitotenv.2023.162737] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 02/20/2023] [Accepted: 03/05/2023] [Indexed: 06/18/2023]
Abstract
Under the current scenario of global warming, it is ecologically relevant to understand how increased temperature influences the combined toxicity of pesticides to aquatic species. Hence, this work aims to: a) determine the temperature effect (15 °C, 20 °C and 25 °C) on the toxicity of two pesticides (oxyfluorfen and Copper (Cu)), on the growth of Thalassiosira weissflogii; b) assess whether temperature affects the type of toxicity interaction between these chemicals; and c) assess the temperature effect on biochemical responses (fatty acids (FA) and sugar profiles) of the pesticides on T. weissflogii. Temperature increased the tolerance of the diatoms to the pesticides with EC50 values between 3.176 and 9.929 μg L-1 for oxyfluorfen and 42.50-230.75 μg L-1 for Cu, respectively, at 15 °C and 25 °C. The mixtures toxicity was better described by the IA model, but temperature altered the type of deviation from dose ratio (15 °C and 20 °C) to antagonism (25 °C). Temperature, as well as the pesticide concentrations, affected the FA and sugar profiles. Increased temperature increased saturated FA and decreased unsaturated FA; it also affected the sugar profiles with a pronounced minimum at 20 °C. Results highlight effects on the nutritional value of these diatoms, with potential repercussion on food webs.
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Affiliation(s)
- Andreia F Mesquita
- CESAM - Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.
| | - Fátima Jesus
- CESAM - Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Fernando J M Gonçalves
- CESAM - Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Ana M M Gonçalves
- CESAM - Centre for Environmental and Marine Studies, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal; University of Coimbra, MARE-Marine and Environmental Sciences Centre/ARNET - Aquatic Research Network, Department of Life Sciences, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
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Sun Y, Zang Y, Chen J, Shang S, Wang J, Liu Q, Tang X. The differing responses of central carbon cycle metabolism in male and female Sargassum thunbergii to ultraviolet-B radiation. FRONTIERS IN PLANT SCIENCE 2022; 13:904943. [PMID: 36262652 PMCID: PMC9574197 DOI: 10.3389/fpls.2022.904943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Accepted: 09/08/2022] [Indexed: 06/16/2023]
Abstract
The enhancement of ultraviolet-B radiation (UV-B) radiation reaching the Earth's surface due to ozone layer depletion is an important topic. Macroalgal species growing in the intertidal zone are often directly exposed to UV-B radiation periodically as the tide changes. In order to better understand the response of macroalgae to UV-B stressed condition, we studied the dominant dioecious intertidal macroalgae Sargassum thunbergii. After consecutive UV-B radiation treatments, we used metabonomics models to analyze and compare the maximum photosynthetic electron transport rate (ETRmax), central carbon cycle metabolism (CCCM) gene expression level, CCCM enzymic activities [pyruvate dehydrogenase and citrate synthase (PDH and CS)], and carbon-based metabolite (including pyruvate, soluble sugar, total amino acid, and lipids) content in male and female S. thunbergii. The results showed that under low and high UV-B radiation, the ETRmax values and six targeted CCCM gene expression levels were significantly higher in males than in females. Under high UV-B radiation, only the CS activity was significantly higher in males than in females. There was no significant difference in PDH activity between males and females. The CCCM models constructed using the metabonomics analysis demonstrate that S. thunbergii males and females exhibit obvious gender differences in their responses to UV-B radiation, providing us with a new understanding of the macroalgal gender differences under UV-B radiation, as past investigations always underestimated their diecious characteristics.
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Affiliation(s)
- Yan Sun
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Yu Zang
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China
| | - Jun Chen
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Shuai Shang
- College of Biological and Environmental Engineering, Binzhou University, Binzhou, China
| | - Jing Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Qian Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Xuexi Tang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
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Modeling the elemental stoichiometry and silica accumulation in diatoms. CURRENT RESEARCH IN MICROBIAL SCIENCES 2022; 3:100164. [DOI: 10.1016/j.crmicr.2022.100164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Pinseel E, Nakov T, Van den Berge K, Downey KM, Judy KJ, Kourtchenko O, Kremp A, Ruck EC, Sjöqvist C, Töpel M, Godhe A, Alverson AJ. Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline. THE ISME JOURNAL 2022; 16:1776-1787. [PMID: 35383290 PMCID: PMC9213524 DOI: 10.1038/s41396-022-01230-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 03/16/2022] [Accepted: 03/21/2022] [Indexed: 05/01/2023]
Abstract
The salinity gradient separating marine and freshwater environments represents a major ecological divide for microbiota, yet the mechanisms by which marine microbes have adapted to and ultimately diversified in freshwater environments are poorly understood. Here, we take advantage of a natural evolutionary experiment: the colonization of the brackish Baltic Sea by the ancestrally marine diatom Skeletonema marinoi. To understand how diatoms respond to low salinity, we characterized transcriptomic responses of acclimated S. marinoi grown in a common garden. Our experiment included eight strains from source populations spanning the Baltic Sea salinity cline. Gene expression analysis revealed that low salinities induced changes in the cellular metabolism of S. marinoi, including upregulation of photosynthesis and storage compound biosynthesis, increased nutrient demand, and a complex response to oxidative stress. However, the strain effect overshadowed the salinity effect, as strains differed significantly in their response, both regarding the strength and the strategy (direction of gene expression) of their response. The high degree of intraspecific variation in gene expression observed here highlights an important but often overlooked source of biological variation associated with how diatoms respond to environmental change.
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Affiliation(s)
- Eveline Pinseel
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA.
| | - Teofil Nakov
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Koen Van den Berge
- Department of Statistics, University of California, Berkeley, CA, USA
- Department of Applied Mathematics, Computer Science and Statistics, Ghent University, Ghent, Belgium
- Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium
| | - Kala M Downey
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Kathryn J Judy
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Olga Kourtchenko
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Anke Kremp
- Leibniz-Institute for Baltic Sea Research Warnemünde, Rostock, Germany
| | - Elizabeth C Ruck
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Conny Sjöqvist
- Environmental and Marine Biology, Åbo Akademi University, Åbo, Finland
| | - Mats Töpel
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Anna Godhe
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Andrew J Alverson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA.
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Machado M, Vaz MGMV, Bromke MA, Rosa RM, Covell L, Souza LPD, Rocha DI, Martins MA, Araújo WL, Szymański J, Nunes-Nesi A. Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey. BIOLOGY 2021; 10:biology10090826. [PMID: 34571703 PMCID: PMC8465370 DOI: 10.3390/biology10090826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/12/2021] [Accepted: 08/13/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully characterized several new molecular mechanisms regarding A. minutum environmental adaptation and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future dinoflagellates’ molecular response to environmental changes. Abstract The toxin-producing dinoflagellate Alexandrium minutum is responsible for the outbreaks of harmful algae bloom (HABs). It is a widely distributed species and is responsible for producing paralytic shellfish poisoning toxins. However, the information associated with the environmental adaptation pathway and toxin biosynthesis in this species is still lacking. Therefore, this study focuses on the functional characterization of A. minutum unigenes obtained from transcriptome sequencing using the Illumina Hiseq 4000 sequencing platform. A total of 58,802 (47.05%) unigenes were successfully annotated using public databases such as NCBI-Nr, UniprotKB, EggNOG, KEGG, InterPRO and Gene Ontology (GO). This study has successfully identified key features that enable A. minutum to adapt to the marine environment, including several carbon metabolic pathways, assimilation of various sources of nitrogen and phosphorus. A. minutum was found to encode homologues for several proteins involved in saxitoxin biosynthesis, including the first three proteins in the pathway of saxitoxin biosynthesis, namely sxtA, sxtG and sxtB. The comprehensive transcriptome analysis presented in this study represents a valuable resource for understanding the dinoflagellates molecular metabolic model regarding nutrient acquisition and biosynthesis of saxitoxin.
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Biochemical Effects of Two Pesticides in Three Different Temperature Scenarios on the Diatom Thalassiosira weissflogii. Processes (Basel) 2021. [DOI: 10.3390/pr9071247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The exponential increase of the human population demands the overuse of fertilizers and pesticides in agriculture practices to suppress food production needs. The excessive use of these chemicals (fertilizers and pesticides) can comport deleterious effects to the ecosystems, including aquatic systems and communities. Oxyfluorfen is a fluorine-based herbicide, and its application has increased, since it is seen as an alternative to control glyphosate-resistant weeds. Copper sulfate is an inorganic pesticide based on copper which is being used in several chemical formulations, and it is the second main constituent of fungicides. Besides the known effects of such products in organisms, climatic changes pose an additional issue, being a main concern among scientists and politicians worldwide, since these alterations may worsen ecosystems’ and organisms’ sensitivity to stress conditions, such as the exposure to pollutants. Thalassiosira weissflogii (Grunow) G. A. Fryxell & Hasle, 1977 plays an important role in aquatic food webs as a primary producer and an essential food source to zooplankton. Thus, alterations on the diatom’s abundance and nutritional value may lead to consequences along the trophic chain. However, few studies have evaluated the biochemical impacts of oxyfluorfen and copper sulfate exposure on diatoms. This study intends to (1) evaluate the effects on the growth rate of both contaminants on T. weissfloggi at three temperatures, considering the actual scenario of climatic changes, and (2) assess biochemical changes on the diatom when exposed to the chemicals at different temperatures. To achieve these aims, the marine diatom was exposed to the two chemicals individually at different temperatures. The results showed an increase in the growth rate with increasing temperatures. Oxyfluorfen exhibited higher toxicity than copper sulfate. At the biochemical level, the microalgae were greatly affected when exposed to oxyfluorfen at 20 °C and 25 °C and when exposed to copper sulfate at 15 °C. Moreover, a general increase was observed for the polysaccharide content along the copper sulfate and oxyfluorfen concentrations. Therefore, the contaminants show the ability to interfere with the diatom growth and the nutritive value, with their effects dependent on the temperature.
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13
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Popovich CA, Faraoni MB, Sequeira A, Daglio Y, Martín LA, Martínez AM, Damiani MC, Matulewicz MC, Leonardi PI. Potential of the marine diatom Halamphora coffeaeformis to simultaneously produce omega-3 fatty acids, chrysolaminarin and fucoxanthin in a raceway pond. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.102030] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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14
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Johansson ON, Töpel M, Egardt J, Pinder MIM, Andersson MX, Godhe A, Clarke AK. Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation. Sci Rep 2019; 9:15143. [PMID: 31641221 PMCID: PMC6805942 DOI: 10.1038/s41598-019-51683-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 10/04/2019] [Indexed: 01/06/2023] Open
Abstract
Diatoms are the dominant phytoplankton in temperate oceans and coastal regions and yet little is known about the genetic basis underpinning their global success. Here, we address this challenge by developing the first phenomic approach for a diatom, screening a collection of randomly mutagenized but identifiably tagged transformants. Based upon their tolerance to temperature extremes, several compromised mutants were identified revealing genes either stress related or encoding hypothetical proteins of unknown function. We reveal one of these hypothetical proteins is a novel putative chloroplast fatty acid transporter whose loss affects several fatty acids including the two omega-3, long-chain polyunsaturated fatty acids - eicosapentaenoic and docosahexaenoic acid, both of which have medical importance as dietary supplements and industrial significance in aquaculture and biofuels. This mutant phenotype not only provides new insights into the fatty acid biosynthetic pathways in diatoms but also highlights the future value of phenomics for revealing specific gene functions in these ecologically important phytoplankton.
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Affiliation(s)
- Oskar N Johansson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530, Gothenburg, Sweden
| | - Mats Töpel
- Department of Marine Sciences, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.,Gothenburg Global Biodiversity Center (GGBC), Box 461, 40530, Gothenburg, Sweden
| | - Jenny Egardt
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530, Gothenburg, Sweden
| | - Matthew I M Pinder
- Department of Marine Sciences, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden
| | - Mats X Andersson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530, Gothenburg, Sweden
| | - Anna Godhe
- Department of Marine Sciences, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden
| | - Adrian K Clarke
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530, Gothenburg, Sweden.
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15
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Liu X, Wen J, Chen W, Du H. Physiological effects of nitrogen deficiency and recovery on the macroalga Gracilariopsis lemaneiformis (Rhodophyta). JOURNAL OF PHYCOLOGY 2019; 55:830-839. [PMID: 30916786 DOI: 10.1111/jpy.12862] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Accepted: 03/05/2019] [Indexed: 05/07/2023]
Abstract
Algal metabolites are the most promising feedstocks for bio-energy production. Gracilariopsis lemaneiformis seems to be a good candidate red alga for polysaccharide production, especially relating to the agar production industry. Nitrogen deficiency is an efficient environmental pressure used to increase the accumulation of metabolites in algae. However, there are no studies on the physiological effects of G. lemaneiformis in response to nitrogen deficiency and its subsequent recovery. Here we integrated physiological data with molecular studies to explore the response strategy of G. lemaneiformis under nitrogen deficiency and recovery. Physiological measurements indicated that amino acids and protein biosynthesis were decreased, while endogenous NH4+ and soluble polysaccharides levels were increased under nitrogen stress. The expression of key genes involved in these pathways further suggested that G. lemaneiformis responded to nitrogen stress through up-regulation or down-regulation of genes related to nitrogen metabolism, and increased levels of endogenous NH4+ to complement the deficiency of exogenous nitrogen. Consistent with the highest accumulation of soluble polysaccharides, the gene encoding UDP-glucose pyrophosphorylase, a molecular marker used to evaluate agar content, was dramatically up-regulated more than 4-fold compared to the relative expression of actin after 4 d of nitrogen recovery. The present data provide important information on the mechanisms of nutrient balance in macroalgae.
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Affiliation(s)
- Xiaojuan Liu
- Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, 515063, China
| | - Jinyan Wen
- Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, 515063, China
| | - Weizhou Chen
- Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, 515063, China
| | - Hong Du
- Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, 515063, China
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16
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Athanasakoglou A, Kampranis SC. Diatom isoprenoids: Advances and biotechnological potential. Biotechnol Adv 2019; 37:107417. [PMID: 31326522 DOI: 10.1016/j.biotechadv.2019.107417] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 06/09/2019] [Accepted: 07/15/2019] [Indexed: 12/31/2022]
Abstract
Diatoms are among the most productive and ecologically important groups of microalgae in contemporary oceans. Due to their distinctive metabolic and physiological features, they offer exciting opportunities for a broad range of commercial and industrial applications. One such feature is their ability to synthesize a wide diversity of isoprenoid compounds. However, limited understanding of how these molecules are synthesized have until recently hindered their exploitation. Following comprehensive genomic and transcriptomic analysis of various diatom species, the biosynthetic mechanisms and regulation of the different branches of the pathway are now beginning to be elucidated. In this review, we provide a summary of the recent advances in understanding diatom isoprenoid synthesis and discuss the exploitation potential of diatoms as chassis for high-value isoprenoid synthesis.
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Affiliation(s)
- Anastasia Athanasakoglou
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Sotirios C Kampranis
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark.
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17
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Novak T, Godrijan J, Pfannkuchen DM, Djakovac T, Medić N, Ivančić I, Mlakar M, Gašparović B. Global warming and oligotrophication lead to increased lipid production in marine phytoplankton. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 668:171-183. [PMID: 30852195 DOI: 10.1016/j.scitotenv.2019.02.372] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 02/19/2019] [Accepted: 02/24/2019] [Indexed: 06/09/2023]
Abstract
Earth temperature is rising and oligotrophication is becoming apparent even in coastal seas. In this changing environment, phytoplankton use carbon and nutrients to form important biomolecules, including lipids. However, the link between lipid production and changing environment is still unexplored. Therefore, we investigated the phytoplankton lipid production in the diatom Chaetoceros pseudocurvisetus cultures under controlled temperatures ranging from 10 to 30 °C and nutrient regimes mimicking oligotrophic and eutrophic conditions. Results were compared to plankton community's lipid production in the northern Adriatic at two stations considered as oligotrophic and mesotrophic during an annual monthly sampling. In order to gain detailed information on the investigated system, we supplemented lipid data with chlorophyll a concentrations, phytoplankton taxonomy, cell abundances and nutrient concentration along with hydrographic parameters. We found enhanced particulate lipid production at higher temperatures, and substantially higher lipid production in oligotrophic conditions. Enhanced lipid production has two opposing roles in carbon sequestration; it can act as a retainer or a sinker. Lipid remodeling, including change in ratio of phospholipids and glycolipids, is more affected by the nutrient status, than the temperature increase. Triacylglycerol accumulation was observed under the nitrogen starvation.
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Affiliation(s)
- Tihana Novak
- Division of Marine and Environmental Research, Ruđer Bošković Institute, POB 108, HR-10002 Zagreb, Croatia.
| | - Jelena Godrijan
- Division of Marine and Environmental Research, Ruđer Bošković Institute, POB 108, HR-10002 Zagreb, Croatia
| | | | - Tamara Djakovac
- Center for Marine Research, Ruđer Bošković Institute, G. Paliaga 5, HR-52210 Rovinj, Croatia
| | - Nikola Medić
- Marine Biological Section, Department of Biology, University of Copenhagen, DK-3000 Helsingør, Denmark
| | - Ingrid Ivančić
- Center for Marine Research, Ruđer Bošković Institute, G. Paliaga 5, HR-52210 Rovinj, Croatia
| | - Marina Mlakar
- Division of Marine and Environmental Research, Ruđer Bošković Institute, POB 108, HR-10002 Zagreb, Croatia
| | - Blaženka Gašparović
- Division of Marine and Environmental Research, Ruđer Bošković Institute, POB 108, HR-10002 Zagreb, Croatia
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18
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Popovich C, Pistonesi M, Hegel P, Constenla D, Bielsa GB, Martín L, Damiani M, Leonardi P. Unconventional alternative biofuels: Quality assessment of biodiesel and its blends from marine diatom Navicula cincta. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101438] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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19
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Athanasakoglou A, Grypioti E, Michailidou S, Ignea C, Makris AM, Kalantidis K, Massé G, Argiriou A, Verret F, Kampranis SC. Isoprenoid biosynthesis in the diatom Haslea ostrearia. THE NEW PHYTOLOGIST 2019; 222:230-243. [PMID: 30394540 DOI: 10.1111/nph.15586] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Accepted: 10/28/2018] [Indexed: 06/08/2023]
Abstract
Diatoms are eukaryotic, unicellular algae that are responsible for c. 20% of the Earth's primary production. Their dominance and success in contemporary oceans have prompted investigations on their distinctive metabolism and physiology. One metabolic pathway that remains largely unexplored in diatoms is isoprenoid biosynthesis, which is responsible for the production of numerous molecules with unique features. We selected the diatom species Haslea ostrearia because of its characteristic isoprenoid content and carried out a comprehensive transcriptomic analysis and functional characterization of the genes identified. We functionally characterized one farnesyl diphosphate synthase, two geranylgeranyl diphosphate synthases, one short-chain polyprenyl synthase, one bifunctional isopentenyl diphosphate isomerase - squalene synthase, and one phytoene synthase. We inferred the phylogenetic origin of these genes and used a combination of functional analysis and subcellular localization predictions to propose their physiological roles. Our results provide insight into isoprenoid biosynthesis in H. ostrearia and propose a model of the central steps of the pathway. This model will facilitate the study of metabolic pathways of important isoprenoids in diatoms, including carotenoids, sterols and highly branched isoprenoids.
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Affiliation(s)
- Anastasia Athanasakoglou
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark
| | - Emilia Grypioti
- Department of Biology, University of Crete, PO Box 2208, Heraklion, 71003, Greece
| | - Sofia Michailidou
- Institute of Applied Biosciences - Centre for Research and Technology Hellas (INAB-CERTH), 6th km. Charilaou - Thermi Road, PO Box 60361, Thermi, Thessaloniki, 57001, Greece
| | - Codruta Ignea
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark
| | - Antonios M Makris
- Institute of Applied Biosciences - Centre for Research and Technology Hellas (INAB-CERTH), 6th km. Charilaou - Thermi Road, PO Box 60361, Thermi, Thessaloniki, 57001, Greece
| | - Kriton Kalantidis
- Department of Biology, University of Crete, PO Box 2208, Heraklion, 71003, Greece
- Institute of Molecular Biology and Biotechnology - Foundation of Research and Technology Hellas (IMBB-FORTH), Nikolaou Plastira 100, Heraklion, Crete, GR-70013, Greece
| | - Guillaume Massé
- UMI 3376 TAKUVIK, Centre national de la recherche scientifique (CNRS), Paris, France
- Département de Biologie, Université Laval, Québec, QC, Canada
| | - Anagnostis Argiriou
- Institute of Applied Biosciences - Centre for Research and Technology Hellas (INAB-CERTH), 6th km. Charilaou - Thermi Road, PO Box 60361, Thermi, Thessaloniki, 57001, Greece
| | - Frederic Verret
- Department of Biology, University of Crete, PO Box 2208, Heraklion, 71003, Greece
| | - Sotirios C Kampranis
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg C, 1871, Denmark
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20
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Remmers IM, D'Adamo S, Martens DE, de Vos RC, Mumm R, America AH, Cordewener JH, Bakker LV, Peters SA, Wijffels RH, Lamers PP. Orchestration of transcriptome, proteome and metabolome in the diatom Phaeodactylum tricornutum during nitrogen limitation. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.08.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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21
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Golda-VanEeckhoutte RL, Roof LT, Needoba JA, Peterson TD. Determination of intracellular pH in phytoplankton using the fluorescent probe, SNARF, with detection by fluorescence spectroscopy. J Microbiol Methods 2018; 152:109-118. [DOI: 10.1016/j.mimet.2018.07.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 07/30/2018] [Accepted: 07/31/2018] [Indexed: 02/04/2023]
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22
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Enhanced biomass production by Phaeodactylum tricornutum overexpressing phosphoenolpyruvate carboxylase. ALGAL RES 2018. [DOI: 10.1016/j.algal.2017.08.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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23
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Rocha RP, Machado M, Vaz MGMV, Vinson CC, Leite M, Richard R, Mendes LBB, Araujo WL, Caldana C, Martins MA, Williams TC, Nunes-Nesi A. Exploring the metabolic and physiological diversity of native microalgal strains (Chlorophyta) isolated from tropical freshwater reservoirs. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.10.021] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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24
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Matthijs M, Fabris M, Obata T, Foubert I, Franco-Zorrilla JM, Solano R, Fernie AR, Vyverman W, Goossens A. The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO J 2017; 36:1559-1576. [PMID: 28420744 DOI: 10.15252/embj.201696392] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 03/14/2017] [Accepted: 03/15/2017] [Indexed: 11/09/2022] Open
Abstract
Diatoms are amongst the most important marine microalgae in terms of biomass, but little is known concerning the molecular mechanisms that regulate their versatile metabolism. Here, the pennate diatom Phaeodactylum tricornutum was studied at the metabolite and transcriptome level during nitrogen starvation and following imposition of three other stresses that impede growth. The coordinated upregulation of the tricarboxylic acid (TCA) cycle during the nitrogen stress response was the most striking observation. Through co-expression analysis and DNA binding assays, the transcription factor bZIP14 was identified as a regulator of the TCA cycle, also beyond the nitrogen starvation response, namely in diurnal regulation. Accordingly, metabolic and transcriptional shifts were observed upon overexpression of bZIP14 in transformed P. tricornutum cells. Our data indicate that the TCA cycle is a tightly regulated and important hub for carbon reallocation in the diatom cell during nutrient starvation and that bZIP14 is a conserved regulator of this cycle.
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Affiliation(s)
- Michiel Matthijs
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.,Center for Plant Systems Biology, VIB, Ghent, Belgium.,Laboratory of Protistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium
| | - Michele Fabris
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.,Center for Plant Systems Biology, VIB, Ghent, Belgium.,Laboratory of Protistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium
| | - Toshihiro Obata
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Imogen Foubert
- Research Unit Food & Lipids, Department of Molecular and Microbial Systems Kulak, Leuven Food Science and Nutrition Research Centre (LFoRCe), Kortrijk, Belgium
| | | | - Roberto Solano
- Genomics Unit, Centro Nacional de Biotecnología-CSIC, Madrid, Spain.,Department of Plant Molecular Genetics, Centro Nacional de Biotecnología-CSIC, Madrid, Spain
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Wim Vyverman
- Laboratory of Protistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium
| | - Alain Goossens
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium .,Center for Plant Systems Biology, VIB, Ghent, Belgium
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25
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Chiriboga N. OG, Rorrer GL. Control of chitin nanofiber production by the lipid‐producing diatom Cyclotella Sp. through fed‐batch addition of dissolved silicon and nitrate in a bubble‐column photobioreactor. Biotechnol Prog 2017; 33:407-415. [DOI: 10.1002/btpr.2445] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 01/30/2017] [Indexed: 01/18/2023]
Affiliation(s)
- Omar G. Chiriboga N.
- School of Chemical, Biological, and Environmental EngineeringOregon State UniversityCorvallis OR97331
| | - Gregory L. Rorrer
- School of Chemical, Biological, and Environmental EngineeringOregon State UniversityCorvallis OR97331
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26
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Schaub I, Wagner H, Graeve M, Karsten U. Effects of prolonged darkness and temperature on the lipid metabolism in the benthic diatom Navicula perminuta from the Arctic Adventfjorden, Svalbard. Polar Biol 2017. [DOI: 10.1007/s00300-016-2067-y] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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27
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Zhang SF, Yuan CJ, Chen Y, Chen XH, Li DX, Liu JL, Lin L, Wang DZ. Comparative Transcriptomic Analysis Reveals Novel Insights into the Adaptive Response of Skeletonema costatum to Changing Ambient Phosphorus. Front Microbiol 2016; 7:1476. [PMID: 27703451 PMCID: PMC5028394 DOI: 10.3389/fmicb.2016.01476] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Accepted: 09/05/2016] [Indexed: 12/11/2022] Open
Abstract
Phosphorus (P) is a limiting macronutrient for diatom growth and productivity in the ocean. Much effort has been devoted to the physiological response of marine diatoms to ambient P change, however, the whole-genome molecular mechanisms are poorly understood. Here, we utilized RNA-Seq to compare the global gene expression patterns of a marine diatom Skeletonema costatum grown in inorganic P-replete, P-deficient, and inorganic- and organic-P resupplied conditions. In total 34,942 unique genes were assembled and 20.8% of them altered significantly in abundance under different P conditions. Genes encoding key enzymes/proteins involved in P utilization, nucleotide metabolism, photosynthesis, glycolysis, and cell cycle regulation were significantly up-regulated in P-deficient cells. Genes participating in circadian rhythm regulation, such as circadian clock associated 1, were also up-regulated in P-deficient cells. The response of S. costatum to ambient P deficiency shows several similarities to the well-described responses of other marine diatom species, but also has its unique features. S. costatum has evolved the ability to re-program its circadian clock and intracellular biological processes in response to ambient P deficiency. This study provides new insights into the adaptive mechanisms to ambient P deficiency in marine diatoms.
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Affiliation(s)
| | | | | | | | | | | | | | - Da-Zhi Wang
- State Key Laboratory of Marine Environmental Science, Department of Environmental Science and Engineering, College of the Environment and Ecology, Xiamen UniversityXiamen, China
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28
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Machado M, Bromke M, Domingues Júnior AP, Marçal Vieira Vaz MG, Rosa RM, Vinson CC, Sabir JS, Rocha DI, Martins MA, Araújo WL, Willmitzer L, Szymanski J, Nunes-Nesi A. Comprehensive metabolic reprograming in freshwater Nitzschia palea strains undergoing nitrogen starvation is likely associated with its ecological origin. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.06.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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29
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Bussard A, Corre E, Hubas C, Duvernois-Berthet E, Le Corguillé G, Jourdren L, Coulpier F, Claquin P, Lopez PJ. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms. Environ Microbiol 2016; 19:909-925. [DOI: 10.1111/1462-2920.13398] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Adrien Bussard
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, CNRS 7208-MNHN-UPMC-IRD 207-UCN-UA; 43 rue Cuvier Paris 75005 France
| | - Erwan Corre
- CNRS, UPMC, FR2424, ABiMS, Station Biologique; Roscoff 29680 France
| | - Cédric Hubas
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, CNRS 7208-MNHN-UPMC-IRD 207-UCN-UA; 43 rue Cuvier Paris 75005 France
| | | | | | - Laurent Jourdren
- Ecole Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Plateforme Génomique; Paris 75005 France
| | - Fanny Coulpier
- Ecole Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Plateforme Génomique; Paris 75005 France
| | - Pascal Claquin
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, CNRS 7208-MNHN-UPMC-IRD 207-UCN-UA, Esplanade de la paix; Caen 14032 France
| | - Pascal Jean Lopez
- UMR Biologie des Organismes et des Ecosystèmes Aquatiques, CNRS 7208-MNHN-UPMC-IRD 207-UCN-UA; 43 rue Cuvier Paris 75005 France
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30
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Bielsa GB, Popovich CA, Rodríguez MC, Martínez AM, Martín LA, Matulewicz MC, Leonardi PI. Simultaneous production assessment of triacylglycerols for biodiesel and exopolysaccharides as valuable co-products in Navicula cincta. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.01.013] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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31
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Lavaud J, Six C, Campbell DA. Photosystem II repair in marine diatoms with contrasting photophysiologies. PHOTOSYNTHESIS RESEARCH 2016; 127:189-99. [PMID: 26156125 DOI: 10.1007/s11120-015-0172-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 06/25/2015] [Indexed: 05/23/2023]
Abstract
Skeletonema costatum and Phaeodactylum tricornutum are model marine diatoms with differing strategies for non-photochemical dissipation of excess excitation energy within photosystem II (PSII). We showed that S. costatum, with connectivity across the pigment bed serving PSII, and limited capacity for induction of sustained non-photochemical quenching (NPQ), maintained a large ratio of [PSII(Total)]/[PSII(Active)] to buffer against fluctuations in light intensity. In contrast, P. tricornutum, with a larger capacity to induce sustained NPQ, could maintain a lower [PSII(Total)]/[PSII(Active)]. Induction of NPQ was correlated with an active PSII repair cycle in both species, and inhibition of chloroplastic protein synthesis with lincomycin leads to run away over-excitation of remaining PSII(Active), particularly in S. costatum. We discuss these distinctions in relation to the differing capacities, induction and relaxation rates for NPQ, and as strain adaptations to the differential light regimes of their originating habitats. The present work further confirms the important role for the light-dependent fast regulation of photochemistry by NPQ interacting with PSII repair cycle capacity in the ecophysiology of both pennate and centric diatoms.
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Affiliation(s)
- Johann Lavaud
- UMRi 7266 'LIENSs', Institut du Littoral et de l'Environnement (ILE), CNRS-University of La Rochelle, 2 rue Olympe de Gouges, 17000, La Rochelle Cedex, France.
| | - Christophe Six
- Department of Biology, Mount Allison University, Sackville, NB E4L 1G7, Canada
- UMR 7144 'Adaptation et Diversité en Milieu Marin', 'Marine Phototrophic Prokaryotes' group, Centre National pour la Recherche Scientifique (CNRS), Station Biologique de Roscoff, Place George Teissier, 29680, Roscoff, France
- UMR 7144 'Adaptation et Diversité en Milieu Marin', 'Marine Phototrophic Prokaryotes' group, Université Pierre et Marie Curie (Paris 06), Station Biologique de Roscoff, Place George Teissier, 29680, Roscoff, France
| | - Douglas A Campbell
- Department of Biology, Mount Allison University, Sackville, NB E4L 1G7, Canada
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Bromke MA, Sabir JS, Alfassi FA, Hajarah NH, Kabli SA, Al-Malki AL, Ashworth MP, Méret M, Jansen RK, Willmitzer L. Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions. PLoS One 2015; 10:e0138965. [PMID: 26440112 PMCID: PMC4595471 DOI: 10.1371/journal.pone.0138965] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2015] [Accepted: 09/08/2015] [Indexed: 11/18/2022] Open
Abstract
Diatoms are very efficient in their use of available nutrients. Changes in nutrient availability influence the metabolism and the composition of the cell constituents. Since diatoms are valuable candidates to search for oil producing algae, measurements of diatom-produced compounds can be very useful for biotechnology. In order to explore the diversity of lipophilic compounds produced by diatoms, we describe the results from an analysis of 13 diatom strains. With the help of a lipidomics platform, which combines an UPLC separation with a high resolution/high mass accuracy mass spectrometer, we were able to measure and annotate 142 lipid species. Out of these, 32 were present in all 13 cultures. The annotated lipid features belong to six classes of glycerolipids. The data obtained from the measurements were used to create lipidomic profiles. The metabolomic overview of analysed cultures is amended by the measurement of 96 polar compounds. To further increase the lipid diversity and gain insight into metabolomic adaptation to nitrogen limitation, diatoms were cultured in media with high and low concentrations of nitrate. The growth in nitrogen-deplete or nitrogen-replete conditions affects metabolite accumulation but has no major influence on the species-specific metabolomic profile. Thus, the genetic component is stronger in determining metabolic patterns than nitrogen levels. Therefore, lipid profiling is powerful enough to be used as a molecular fingerprint for diatom cultures. Furthermore, an increase of triacylglycerol (TAG) accumulation was observed in low nitrogen samples, although this trend was not consistent across all 13 diatom strains. Overall, our results expand the current understanding of metabolomics diversity in diatoms and confirm their potential value for producing lipids for either bioenergy or as feed stock.
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Affiliation(s)
- Mariusz A. Bromke
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Jamal S. Sabir
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Fahad A. Alfassi
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Nahid H. Hajarah
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Saleh A. Kabli
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Abdulrahman L. Al-Malki
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Matt P. Ashworth
- University of Texas at Austin, Department of Integrative Biology, University of Texas at Austin, Austin, Texas, 78712, United States of America
| | - Michaël Méret
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
| | - Robert K. Jansen
- University of Texas at Austin, Department of Integrative Biology, University of Texas at Austin, Austin, Texas, 78712, United States of America
- Biotechnology Research Group, Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Lothar Willmitzer
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam, Germany
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Silencing UDP-glucose pyrophosphorylase gene in Phaeodactylum tricornutum affects carbon allocation. N Biotechnol 2015; 33:237-44. [PMID: 26162893 DOI: 10.1016/j.nbt.2015.06.003] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2015] [Revised: 06/25/2015] [Accepted: 06/30/2015] [Indexed: 11/24/2022]
Abstract
The effects of the suppression of UDP-glucose pyrophosphorylase (UGPase) on chrysolaminaran biosynthesis and carbon allocation were investigated in Phaeodactylum tricornutum. The 69% decrease in UGPase activity was accompanied by a 4.89 fold reduction in Ugp transcript abundance. Inactivation of UGPase in P. tricornutum led to a significant decrease in chrysolaminaran content and an increase in lipid synthesis. These findings suggest that UGPase is a rate-limiting enzyme and may play an important role in chrysolaminarin biosynthesis and carbon allocation. Our results support a theoretical deduction that Ugp is a good candidate for improving lipid synthesis in diatoms.
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d’Ippolito G, Sardo A, Paris D, Vella FM, Adelfi MG, Botte P, Gallo C, Fontana A. Potential of lipid metabolism in marine diatoms for biofuel production. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:28. [PMID: 25763104 PMCID: PMC4355990 DOI: 10.1186/s13068-015-0212-4] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2014] [Accepted: 01/26/2015] [Indexed: 05/04/2023]
Abstract
BACKGROUND Diatoms are an ecologically relevant group of microalgae that are not commonly considered for bio-oil production even if they are responsible for massive blooms at sea. Seventeen diatom species were screened for their capacity to produce biomass and lipids, in relation to their growth rate. Triglyceride levels were also assessed as a preferential source of biofuels. RESULTS Using statistical analysis, two centric diatoms, Thalassiosira weissflogii and Cyclotella cryptica, were selected as good candidates for oil production. Lipid levels significantly increased when the two diatoms were cultivated in a two-stage process under nitrogen limitation. The effect was less pronounced in cultures where silicon was reduced to 20% of the standard supply. Nitrogen limitation did not affect growth rates but led to lipid remodeling and de novo synthesis of triacylglycerols. CONCLUSIONS Triacylglycerols in T. weissflogii and C. cryptica can account for up to 82% and 88% of total glycerolipids, thereby suggesting that the two species are promising candidates for large-scale experimentation for biofuel production.
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Affiliation(s)
- Giuliana d’Ippolito
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Angela Sardo
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Debora Paris
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Filomena Monica Vella
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Maria Grazia Adelfi
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Pierpaolo Botte
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Carmela Gallo
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
| | - Angelo Fontana
- Istituto di Chimica Biomolecolare (ICB) - CNR, Via Campi Flegrei 34, 80078 Pozzuoli, NA Italy
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Recht L, Töpfer N, Batushansky A, Sikron N, Gibon Y, Fait A, Nikoloski Z, Boussiba S, Zarka A. Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis. J Biol Chem 2014; 289:30387-30403. [PMID: 25183014 DOI: 10.1074/jbc.m114.555144] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
The green alga Hematococcus pluvialis accumulates large amounts of the antioxidant astaxanthin under inductive stress conditions, such as nitrogen starvation. The response to nitrogen starvation and high light leads to the accumulation of carbohydrates and fatty acids as well as increased activity of the tricarboxylic acid cycle. Although the behavior of individual pathways has been well investigated, little is known about the systemic effects of the stress response mechanism. Here we present time-resolved metabolite, enzyme activity, and physiological data that capture the metabolic response of H. pluvialis under nitrogen starvation and high light. The data were integrated into a putative genome-scale model of the green alga to in silico test hypotheses of underlying carbon partitioning. The model-based hypothesis testing reinforces the involvement of starch degradation to support fatty acid synthesis in the later stages of the stress response. In addition, our findings support a possible mechanism for the involvement of the increased activity of the tricarboxylic acid cycle in carbon repartitioning. Finally, the in vitro experiments and the in silico modeling presented here emphasize the predictive power of large scale integrative approaches to pinpoint metabolic adjustment to changing environments.
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Affiliation(s)
- Lee Recht
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel
| | - Nadine Töpfer
- Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam 14476, Germany, and
| | - Albert Batushansky
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel
| | - Noga Sikron
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel
| | - Yves Gibon
- INRA, Université de Bordeaux, Bordeaux Metabolome Facility Bordeaux, UMR 1332 Fruit Biology and Pathology, Villenave d'Ornon 33140, France
| | - Aaron Fait
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel
| | - Zoran Nikoloski
- Systems Biology and Mathematical Modeling Group, Max Planck Institute of Molecular Plant Physiology, Potsdam 14476, Germany, and
| | - Sammy Boussiba
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel,.
| | - Aliza Zarka
- French Associates Institute for Agriculture and Biotechnology, the Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Sede Boker 84990, Israel
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Mekhalfi M, Puppo C, Avilan L, Lebrun R, Mansuelle P, Maberly SC, Gontero B. Glyceraldehyde-3-phosphate dehydrogenase is regulated by ferredoxin-NADP reductase in the diatom Asterionella formosa. THE NEW PHYTOLOGIST 2014; 203:414-423. [PMID: 24799178 DOI: 10.1111/nph.12820] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Accepted: 03/22/2014] [Indexed: 05/24/2023]
Abstract
Diatoms are a widespread and ecologically important group of heterokont algae that contribute c. 20% to global productivity. Previous work has shown that regulation of their key Calvin cycle enzymes differs from that of the Plantae, and that in crude extracts, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) can be inhibited by nicotinamide adenine dinucleotide phosphate reduced (NADPH) under oxidizing conditions. The freshwater diatom, Asterionella formosa, was studied using enzyme kinetics, chromatography, surface plasmon resonance, mass spectrometry and sequence analysis to determine the mechanism behind this GAPDH inhibition. GAPDH interacted with ferredoxin-nicotinamide adenine dinucleotide phosphate (NADP) reductase (FNR) from the primary phase of photosynthesis, and the small chloroplast protein, CP12. Sequences of copurified GAPDH and FNR were highly homologous with published sequences. However, the widespread ternary complex among GAPDH, phosphoribulokinase and CP12 was absent. Activity measurements under oxidizing conditions showed that NADPH can inhibit GAPDH-CP12 in the presence of FNR, explaining the earlier observed inhibition within crude extracts. Diatom plastids have a distinctive metabolism, including the lack of the oxidative pentose phosphate pathway, and so cannot produce NADPH in the dark. The observed down-regulation of GAPDH in the dark may allow NADPH to be rerouted towards other reductive processes contributing to their ecological success.
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Affiliation(s)
- Malika Mekhalfi
- Aix-Marseille Université CNRS, BIP UMR 7281, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
| | - Carine Puppo
- Aix-Marseille Université CNRS, BIP UMR 7281, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
| | - Luisana Avilan
- Aix-Marseille Université CNRS, BIP UMR 7281, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
| | - Régine Lebrun
- Plate-forme Protéomique, FR3479, IBiSA Marseille-Protéomique IMM-CNRS, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
| | - Pascal Mansuelle
- Plate-forme Protéomique, FR3479, IBiSA Marseille-Protéomique IMM-CNRS, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
| | - Stephen C Maberly
- Centre for Ecology & Hydrology, Lake Ecosystems Group, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster, LA1 4AP, UK
| | - Brigitte Gontero
- Aix-Marseille Université CNRS, BIP UMR 7281, 31 Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France
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Fields MW, Hise A, Lohman EJ, Bell T, Gardner RD, Corredor L, Moll K, Peyton BM, Characklis GW, Gerlach R. Sources and resources: importance of nutrients, resource allocation, and ecology in microalgal cultivation for lipid accumulation. Appl Microbiol Biotechnol 2014; 98:4805-16. [PMID: 24695829 PMCID: PMC4024127 DOI: 10.1007/s00253-014-5694-7] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Revised: 03/13/2014] [Accepted: 03/14/2014] [Indexed: 11/17/2022]
Abstract
Regardless of current market conditions and availability of conventional petroleum sources, alternatives are needed to circumvent future economic and environmental impacts from continued exploration and harvesting of conventional hydrocarbons. Diatoms and green algae (microalgae) are eukaryotic photoautotrophs that can utilize inorganic carbon (e.g., CO2) as a carbon source and sunlight as an energy source, and many microalgae can store carbon and energy in the form of neutral lipids. In addition to accumulating useful precursors for biofuels and chemical feed stocks, the use of autotrophic microorganisms can further contribute to reduced CO2 emissions through utilization of atmospheric CO2. Because of the inherent connection between carbon, nitrogen, and phosphorus in biological systems, macronutrient deprivation has been proven to significantly enhance lipid accumulation in different diatom and algae species. However, much work is needed to understand the link between carbon, nitrogen, and phosphorus in controlling resource allocation at different levels of biological resolution (cellular versus ecological). An improved understanding of the relationship between the effects of N, P, and micronutrient availability on carbon resource allocation (cell growth versus lipid storage) in microalgae is needed in conjunction with life cycle analysis. This mini-review will briefly discuss the current literature on the use of nutrient deprivation and other conditions to control and optimize microalgal growth in the context of cell and lipid accumulation for scale-up processes.
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Affiliation(s)
- Matthew W Fields
- Department of Microbiology and Immunology, Montana State University, 109 Lewis Hall, Bozeman, MT, 59717, USA,
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Mühlroth A, Li K, Røkke G, Winge P, Olsen Y, Hohmann-Marriott MF, Vadstein O, Bones AM. Pathways of lipid metabolism in marine algae, co-expression network, bottlenecks and candidate genes for enhanced production of EPA and DHA in species of Chromista. Mar Drugs 2013; 11:4662-97. [PMID: 24284429 PMCID: PMC3853752 DOI: 10.3390/md11114662] [Citation(s) in RCA: 125] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2013] [Revised: 11/05/2013] [Accepted: 11/07/2013] [Indexed: 12/19/2022] Open
Abstract
The importance of n-3 long chain polyunsaturated fatty acids (LC-PUFAs) for human health has received more focus the last decades, and the global consumption of n-3 LC-PUFA has increased. Seafood, the natural n-3 LC-PUFA source, is harvested beyond a sustainable capacity, and it is therefore imperative to develop alternative n-3 LC-PUFA sources for both eicosapentaenoic acid (EPA, 20:5n-3) and docosahexaenoic acid (DHA, 22:6n-3). Genera of algae such as Nannochloropsis, Schizochytrium, Isochrysis and Phaedactylum within the kingdom Chromista have received attention due to their ability to produce n-3 LC-PUFAs. Knowledge of LC-PUFA synthesis and its regulation in algae at the molecular level is fragmentary and represents a bottleneck for attempts to enhance the n-3 LC-PUFA levels for industrial production. In the present review, Phaeodactylum tricornutum has been used to exemplify the synthesis and compartmentalization of n-3 LC-PUFAs. Based on recent transcriptome data a co-expression network of 106 genes involved in lipid metabolism has been created. Together with recent molecular biological and metabolic studies, a model pathway for n-3 LC-PUFA synthesis in P. tricornutum has been proposed, and is compared to industrialized species of Chromista. Limitations of the n-3 LC-PUFA synthesis by enzymes such as thioesterases, elongases, acyl-CoA synthetases and acyltransferases are discussed and metabolic bottlenecks are hypothesized such as the supply of the acetyl-CoA and NADPH. A future industrialization will depend on optimization of chemical compositions and increased biomass production, which can be achieved by exploitation of the physiological potential, by selective breeding and by genetic engineering.
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Affiliation(s)
- Alice Mühlroth
- Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (A.M.); (K.L.); (P.W.); (Y.O.)
| | - Keshuai Li
- Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (A.M.); (K.L.); (P.W.); (Y.O.)
| | - Gunvor Røkke
- Department of Biotechnology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (G.R.); (M.F.H.-M.); (O.V.)
| | - Per Winge
- Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (A.M.); (K.L.); (P.W.); (Y.O.)
| | - Yngvar Olsen
- Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (A.M.); (K.L.); (P.W.); (Y.O.)
| | - Martin F. Hohmann-Marriott
- Department of Biotechnology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (G.R.); (M.F.H.-M.); (O.V.)
| | - Olav Vadstein
- Department of Biotechnology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (G.R.); (M.F.H.-M.); (O.V.)
| | - Atle M. Bones
- Department of Biology, Norwegian University of Science and Technology, Trondheim 7491, Norway; E-Mails: (A.M.); (K.L.); (P.W.); (Y.O.)
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