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Tuttle MJ, Bradow BM, Martineau RL, Carter MS, Mancini JA, Holley KA, Diltz RA, Hung CS, Gupta MK. Shelf-Stable Sporosarcina pasteurii Formulation for Scalable Laboratory and Field-Based Production of Biocement. ACS APPLIED MATERIALS & INTERFACES 2025. [PMID: 39836658 DOI: 10.1021/acsami.4c15381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2025]
Abstract
Biocement is an environmentally friendly alternative to traditional cement that is produced via microbially induced calcium carbonate precipitation (MICP) and has great potential to mitigate the environmental harms of cement and concrete use. Current production requires on-site bacterial cultivation and the application of live culture to target materials, lacking the convenience of stable formulas that enable broad adoption and application by nonscientific professionals. Here, we report the development of a dry shelf-stable formulation of Sporosarcina pasteurii, the model organism for biocement production. At laboratory scale, when inoculated at an equivalent concentration of viable cells, we show that this formulation produces biocement equal in strength to that produced using live cell cultures. We further demonstrate that this formulation forms biocement in the field within 24 h, leading to ground improvement with increased bearing capacity. These results illustrate that preserved, shelf-stable bacteria can contribute to rapid biocement production and can be adopted for scaled geotechnical and construction purposes.
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Affiliation(s)
- Matthew J Tuttle
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
- Biological and Nanoscale Technologies Division, UES Inc., Dayton, Ohio 45432, United States
| | - Brandon M Bradow
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
- Biological and Nanoscale Technologies Division, UES Inc., Dayton, Ohio 45432, United States
| | - Rhett L Martineau
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
| | - Michael S Carter
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
- Biological and Nanoscale Technologies Division, UES Inc., Dayton, Ohio 45432, United States
| | - Joshua A Mancini
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
- Biological and Nanoscale Technologies Division, UES Inc., Dayton, Ohio 45432, United States
| | - Karen A Holley
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
- Biological and Nanoscale Technologies Division, UES Inc., Dayton, Ohio 45432, United States
| | - Robert A Diltz
- Air Force Civil Engineer Center, Tyndall AFB, Florida 32403, United States
| | - Chia-Suei Hung
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
| | - Maneesh K Gupta
- Materials and Manufacturing Directorate, Air Force Research Laboratory, Wright-Patterson AFB, Ohio 45433, United States
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Zhang S, Liu S, Chen M, Lu J, Ma Y. Characterization of urease active calcite-producing strain YX-3 combined with the whole genome. ENVIRONMENTAL RESEARCH 2024; 262:119855. [PMID: 39208972 DOI: 10.1016/j.envres.2024.119855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/13/2024] [Accepted: 08/26/2024] [Indexed: 09/04/2024]
Abstract
Urease found in a wide range of microorganisms plays a vital role in ureolytic induced calcite precipitation (UICP). However, the genomic information on urease-producing strains is limited, and there is a need for further in-depth studies on aspects such as the regulation of urease activity by nickel ligand residues. The present study delved into the elucidation of urease activity in a newly isolated strain YX-3 coupled with nickel-ligand residues by employing the genetic architecture of biomineralization-controlled growth, molecular docking, molecular dynamics simulation (MDS), and site-directed mutagenesis. Genome-wide sequencing showed the presence of urease gene clusters, comprising structural genes ureA, ureB, and ureC, alongside auxiliary genes ureD, ureE, ureF, and ureG. RT-qPCR analysis showed that the addition of NiCl2 resulted in a significant up-regulation of ureC expression. His267, His294, and Gly325 in the domain of UreC were further proved to coordinate with nickel ions and urea simultaneously through homology modeling and molecular docking, and molecular dynamics simulations (MDS) showed the urease-urea docking complexes exhibited degressive binding stability by four metrics including root mean square deviations (RMSD) when those residues were mutated into alanine respectively. Western blotting exhibited that mutations of H267A, H294A, and G325A led to a reduction in the relative expression of urease, wherein urease activity was about 62%, 45%, and 20% times that of the wild type (WT), respectively. The overexpression results further confirmed the importance of these residues for urease activity and CaCO3 precipitation. These results would help to deepen the understanding of urease-producing strains at a molecular level and expand the theoretical basis for modulating urease activity.
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Affiliation(s)
- Shuqi Zhang
- College of Life Science, Northwest University, 229 Tai bai North Rd, Xi'an, Shaanxi, 710069, China; Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, Xi'an, Shaanxi, 710069, China
| | - Shichuang Liu
- College of Life Science, Northwest University, 229 Tai bai North Rd, Xi'an, Shaanxi, 710069, China
| | - Mengyao Chen
- College of Life Science, Northwest University, 229 Tai bai North Rd, Xi'an, Shaanxi, 710069, China
| | - Juncheng Lu
- College of Life Science, Northwest University, 229 Tai bai North Rd, Xi'an, Shaanxi, 710069, China
| | - Yanling Ma
- College of Life Science, Northwest University, 229 Tai bai North Rd, Xi'an, Shaanxi, 710069, China; Shaanxi Provincial Key Laboratory of Biotechnology, Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Science, Northwest University, Xi'an, Shaanxi, 710069, China.
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Martín-Cereceda M, de Cos-Gandoy A, Williams RAJ, Elliott D, Serrano-Bellón A, Pérez-Uz B, Sanchez-Jimenez A. Cast from the Past? Microbial Diversity of a Neolithic Stone Circle. Microorganisms 2024; 12:2338. [PMID: 39597728 PMCID: PMC11596248 DOI: 10.3390/microorganisms12112338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Revised: 11/05/2024] [Accepted: 11/11/2024] [Indexed: 11/29/2024] Open
Abstract
We studied the microbial diversity colonizing limestone rock pools at a Neolithic Monument (Arbor Low, Derbyshire, England). Five pools were analyzed: four located at the megaliths of the stone circle and one pool placed at the megalith at the Gib Hill burial mound 300 m distant. Samples were taken from rock pool walls and sediments, and investigated through molecular metabarcoding. The microbiome consisted of 23 phyla of bacteria (831 OTUs), 4 phyla of archaea (19 OTUs), and 27 phyla of microbial eukarya (596 OTUs). For bacteria, there were statistically significant differences in wall versus sediment populations, but not between pools. For archaea and eukarya, significant differences were found only between pools. The most abundant bacterial phylum in walls was Cyanobacteriota, and Pseudomonadota in sediments. For archaea and microbial eukarya, the dominant phyla were Euryarcheota and Chlorophyta, respectively, in both wall and sediments. The distant pool (P5) showed a markedly different community structure in phyla and species, habitat discrimination, and CHN content. Species sorting and dispersal limitation are discussed as mechanisms structuring the microbiome assemblages and their spatial connectivity. The Arbor Low microbiome is composed of terrestrial representatives common in extreme environments. The high presence of Cyanobacteriota and Chlorophyta in the Arbor Low stones is troubling, as these microorganisms can induce mechanical disruption by penetrating the limestone matrix through endolithic/chasmoendolithic growth. Future research should focus on the metabolic traits of strains to ascertain their implication in bioweathering and/or biomineralization.
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Affiliation(s)
- Mercedes Martín-Cereceda
- Department of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (R.A.J.W.); (A.S.-B.); (B.P.-U.)
| | - Amaya de Cos-Gandoy
- Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (A.d.C.-G.); (A.S.-J.)
| | - Richard A. J. Williams
- Department of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (R.A.J.W.); (A.S.-B.); (B.P.-U.)
| | - David Elliott
- Nature Based Solutions Research Centre, University of Derby, Derby DE22 1GB, UK;
| | - Andrea Serrano-Bellón
- Department of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (R.A.J.W.); (A.S.-B.); (B.P.-U.)
| | - Blanca Pérez-Uz
- Department of Genetics, Physiology and Microbiology, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (R.A.J.W.); (A.S.-B.); (B.P.-U.)
| | - Abel Sanchez-Jimenez
- Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Complutense University of Madrid, 28040 Madrid, Spain; (A.d.C.-G.); (A.S.-J.)
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Debnath A, Jeengar R, Maity D, Sen R. Bio-inspired synthesis of nanocrystalline calcite demonstrating significant improvement in mechanical properties of concrete: a construction-nanobiotechnology approach. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:57666-57684. [PMID: 39287740 DOI: 10.1007/s11356-024-34882-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 08/28/2024] [Indexed: 09/19/2024]
Abstract
The bioinspired synthesis of construction material, known as biocement, represents a significant advancement in addressing the environmental sustainability issues associated with traditional cement use in the built environment. Biocement is produced through the process of microbially induced bio-mineralization (MIBM), which offers a promising alternative or supplement to conventional cement, potentially reducing its consumption. Despite extensive literature on the application of biocement in construction biotechnology, the fundamental mechanisms underlying its ability to enhance concrete quality remain poorly understood. This study focuses on the kinetics of biomineral synthesis by two Bacillus species; Bacillus megaterium RB05 and Bacillus foraminis DRG5, to identify the most effective strain for biomineralization. Bioconcrete specimens were created by adding inoculum containing Bacillus megaterium RB05 cells with a nutrient solution to the concrete mixture in a layer-by-layer approach. After 28 days of water curing, nanoparticles of CaCO3, ranging in size from 27 to 82 nm, were produced in the bioconcrete specimens. The resulting concrete, containing nanocrystalline biogenic calcite, demonstrated significant improvements in mechanical properties. Specifically, compressive and tensile strengths of the bioconcrete, tested using a universal testing machine (UTM), increased by 7.69 ± 0.08% and 22 ± 0.1%, respectively, after 72 h of curing. Additionally, the biocement was found to exhibit an organic-inorganic hybrid nature, as identified by TEM, EDAX, FESEM, FTIR, and XRD analyses. The enhanced mechanical properties were attributed to the high surface-to-volume ratio and hybrid nature of the calcite nanoparticles. The findings of this investigation are encouraging, suggesting the potential development of future green and self-sustainable construction materials or bioconcrete.
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Affiliation(s)
- Ankita Debnath
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Ritik Jeengar
- Civil Engineering Department, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Damodar Maity
- Civil Engineering Department, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India
| | - Ramkrishna Sen
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India.
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Rasheed S, Khushnood RA, Raza A, Ahmed S, Kanwal M. Development of biological techniques to prevent corrosion of reinforcing steel bars. Heliyon 2024; 10:e37966. [PMID: 39323773 PMCID: PMC11422142 DOI: 10.1016/j.heliyon.2024.e37966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 09/13/2024] [Accepted: 09/14/2024] [Indexed: 09/27/2024] Open
Abstract
The electrochemical corrosive processes compromise the passivity of reinforcing steel, potentially leading to structural integrity loss and, in extreme cases, concrete infrastructure failures. While bio-inspired concretes show promise in mitigating strength degradation and enabling self-healing of concrete flaws, their interaction with steel reinforcement remains underexplored. Thus, this investigation aimed to establish a protective strategy by fostering biofilm growth on rebar surfaces. To achieve this, Bacillus subtilis and Escherichia coli bacteria were utilized as biofilm-forming agents, aided by magnetic iron oxide and zeolite micro-nano particles. The study encompassed a thorough assessment of split tensile strength, corrosion resistance of bio-treated embedded steel bars, and a comprehensive biofilm characterization, along with a meticulous examination of the microstructure at the steel-concrete interface. The findings underscored a significant improvement in split tensile strength, demonstrating a remarkable 84.2 % increase when bacterial species were combined with iron oxide nanoparticles, in contrast to the control specimens. Furthermore, the bio-treated bars exhibited an impressive corrosion inhibition potential of 78.5 % relative to their unaltered counterparts. These outcomes are attributed to the discernible refinement of microstructural features surrounding the steel reinforcement and the heightened densification of the inter-transitional zone between steel and concrete.
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Affiliation(s)
- Sajid Rasheed
- NUST Institute of Civil Engineering (NICE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H/12 Campus, Islamabad, 44000, Pakistan
| | - Rao Arslan Khushnood
- NUST Institute of Civil Engineering (NICE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H/12 Campus, Islamabad, 44000, Pakistan
| | - Ali Raza
- NUST Institute of Civil Engineering (NICE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H/12 Campus, Islamabad, 44000, Pakistan
- School of Civil and Environmental Engineering, University of New South Wales (UNSW Sydney), Sydney, NSW, 2052, Australia
| | - Sajjad Ahmed
- University College of Engineering and Technology, Bahauddin Zakaria University, Multan, Pakistan
| | - Maria Kanwal
- NUST Institute of Civil Engineering (NICE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H/12 Campus, Islamabad, 44000, Pakistan
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Li J, Zhu F, Wu F, Chen Y, Richards J, Li T, Li P, Shang D, Yu J, Viles H, Guo Q. Impact of soil density on biomineralization using EICP and MICP techniques for earthen sites consolidation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 363:121410. [PMID: 38850919 DOI: 10.1016/j.jenvman.2024.121410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 05/30/2024] [Accepted: 06/05/2024] [Indexed: 06/10/2024]
Abstract
Enzyme-induced calcium carbonate precipitation (EICP) and microbially-induced calcium carbonate precipitation (MICP) techniques represent emerging trends in soil stabilization. However, the impact of soil density on biomineralization, particularly in historical earthen sites, remains unclear. This study compares the consolidation effects of EICP and MICP on cylindrical samples (10 cm × 5 cm) with three densities (1.5 g/cm3, 1.6 g/cm3, and 1.7 g/cm3) derived from the soil near the UNESCO World Cultural Heritage Site of Suoyang Ancient City, Gansu Province, China. Results showed that calcium carbonate production increased across all densities through bio-cementation, with higher densities producing more calcium carbonate. MICP-treated specimens exhibited larger increases in calcium carbonate production compared to those treated with EICP. Specimens with a density of 1.7 g/cm³ showed a wave velocity increase of 3.26% (EICP) and 7.13% (MICP), and an unconfined compressive strength increase of 8% (EICP) and 26% (MICP). These strength increases correlated with the generation of calcium carbonate. The findings suggest that biomineralization can be effectively utilized for in situ consolidation of earthen sites, emphasizing the importance of considering soil density in biologically-based conservation technologies. Furthermore, MICP shows potential advantages over EICP in providing stronger, compatible and more sustainable soil reinforcement.
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Affiliation(s)
- Jie Li
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China.
| | - Feiqing Zhu
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China
| | - Fasi Wu
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China.
| | - Yuxin Chen
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China
| | - Jenny Richards
- School of Geography and the Environment, Oxford University, Oxford, OX1 3QY, UK
| | - Tianxiao Li
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China
| | - Ping Li
- Cultural Heritage Conservation and Design Consulting Co., Ltd. of Mogao Grottoes, Dunhuang, 736200, Gansu, PR China
| | - Dongjuan Shang
- Cultural Heritage Conservation and Design Consulting Co., Ltd. of Mogao Grottoes, Dunhuang, 736200, Gansu, PR China
| | - Jing Yu
- Cultural Heritage Conservation and Design Consulting Co., Ltd. of Mogao Grottoes, Dunhuang, 736200, Gansu, PR China
| | - Heather Viles
- School of Geography and the Environment, Oxford University, Oxford, OX1 3QY, UK
| | - Qinglin Guo
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang Academy, Dunhuang, 736200, Gansu, PR China; Gansu Provincial Research Center for Conservation of Cultural Heritage, Dunhuang, 736200, PR China; Key Scientific Research Base of Conversation for Ancient Wall Paintings of National Cultural Heritage Administration, Dunhuang, 736200, Gansu, PR China.
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Sanjurjo-Sánchez J, Alves C, Freire-Lista DM. Biomineral deposits and coatings on stone monuments as biodeterioration fingerprints. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168846. [PMID: 38036142 DOI: 10.1016/j.scitotenv.2023.168846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 11/16/2023] [Accepted: 11/22/2023] [Indexed: 12/02/2023]
Abstract
Biominerals deposition processes, also called biomineralisation, are intimately related to biodeterioration on stone surfaces. They include complex processes not always completely well understood. The study of biominerals implies the identification of organisms, their molecular mechanisms, and organism/rock/atmosphere interactions. Sampling restrictions of monument stones difficult the biominerals study and the in situ demonstrating of biodeterioration processes. Multidisciplinary works are required to understand the whole process. Thus, studies in heritage buildings have taken advantage of previous knowledge acquired thanks to laboratory experiments, investigations carried out on rock outcrops and within caves from some years ago. With the extrapolation of such knowledge to heritage buildings and the advances in laboratory techniques, there has been a huge increase of knowledge regarding biomineralisation and biodeterioration processes in stone monuments during the last 20 years. These advances have opened new debates about the implications on conservation interventions, and the organism's role in stone conservation and decay. This is a review of the existing studies of biominerals formation, biodeterioration on laboratory experiments, rocks, caves, and their application to building stones of monuments.
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Affiliation(s)
| | - Carlos Alves
- LandS/Lab2PT-Landscapes, Heritage and Territory Laboratory (FCT-UIDB/04509/2020) and Earth Sciences Department/School of Sciences, University of Minho, 4710-057 Braga, Portugal
| | - David M Freire-Lista
- Universidade de Trás-os-Montes e Alto Douro, UTAD, Escola de Ciências da Vida e do Ambiente, Quinta dos Prados, 5000-801 Vila Real, Portugal; Centro de Geociências, Universidade de Coimbra, Portugal
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8
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Vaskevicius L, Malunavicius V, Jankunec M, Lastauskiene E, Talaikis M, Mikoliunaite L, Maneikis A, Gudiukaite R. Insights in MICP dynamics in urease-positive Staphylococcus sp. H6 and Sporosarcina pasteurii bacterium. ENVIRONMENTAL RESEARCH 2023; 234:116588. [PMID: 37423368 DOI: 10.1016/j.envres.2023.116588] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 06/22/2023] [Accepted: 07/06/2023] [Indexed: 07/11/2023]
Abstract
Microbially induced calcite precipitation (MICP) is an efficient and eco-friendly technique that has attracted significant interest for resolving various problems in the soil (erosion, improving structural integrity and water retention, etc.), remediation of heavy metals, production of self-healing concrete or restoration of different concrete structures. The success of most common MICP methods depends on microorganisms degrading urea which leads to the formation of CaCO3 crystals. While Sporosarcina pasteurii is a well-known microorganism for MICP, other soil abundant microorganisms, such as Staphylococcus bacteria have not been thoroughly studied for its efficiency in bioconsolidation though MICP is a very important proccess which can ensure soil quality and health. This study aimed to analyze MICP process at the surface level in Sporosarcina pasteurii and a newly screened Staphylococcus sp. H6 bacterium as well as show the possibility of this new microorganism to perform MICP. It was observed that Staphylococcus sp. H6 culture precipitated 157.35 ± 3.3 mM of Ca2+ ions from 200 mM, compared to 176 ± 4.8 mM precipitated by S. pasteurii. The bioconsolidation of sand particles was confirmed by Raman spectroscopy and XRD analysis, which indicated the formation of CaCO3 crystals for both Staphylococcus sp. H6 and S. pasteurii cells. The water-flow test suggested a significant reduction in water permeability in bioconsolidated sand samples for both Staphylococcus sp. H6 and S. pasteurii. Notably, this study provides the first evidence that CaCO3 precipitation occurs on the surface of Staphylococcus and S. pasteurii cells within the initial 15-30 min after exposure to the biocementation solution. Furthermore, Atomic force microscopy (AFM) indicated rapid changes in cell roughness, with bacterial cells becoming completely coated with CaCO3 crystals after 90 min incubation with a biocementation solution. To our knowledge, this is the first time where atomic force microscopy was used to visualize the dynamic of MICP on cell surface.
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Affiliation(s)
- Laurynas Vaskevicius
- Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania
| | - Vilius Malunavicius
- Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania
| | - Marija Jankunec
- Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania
| | - Egle Lastauskiene
- Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania
| | - Martynas Talaikis
- Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania
| | - Lina Mikoliunaite
- Department of Physical Chemistry, Institute of Chemistry, Faculty of Chemistry and Geosciences, Vilnius University, Naugarduko St. 24, LT-03225, Vilnius, Lithuania; Laboratory of Spectroelectrochemistry, Department of Organic Chemistry, Center for Physical Sciences and Technology, Sauletekis Av. 3, LT-10257, Vilnius, Lithuania
| | - Andrius Maneikis
- Vilnius Gediminas Technical University, Sauletekis Av. 11, LT-10223, Vilnius, Lithuania
| | - Renata Gudiukaite
- Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257, Vilnius, Lithuania.
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9
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Li T, Zhang H, Tan X, Zhang R, Wu F, Yu Z, Su B. New insights into Saccharomyces cerevisiae induced calcium carbonate precipitation. Front Bioeng Biotechnol 2023; 11:1261205. [PMID: 37720316 PMCID: PMC10500597 DOI: 10.3389/fbioe.2023.1261205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 08/22/2023] [Indexed: 09/19/2023] Open
Abstract
Our previous study reported that Saccharomyces cerevisiae could induce calcium carbonate (CaCO3) precipitation, but the associated mechanism was unclear. In the present study, Saccharomyces cerevisiae was cultured under various conditions, including the presence of different organic acids and initial pH, and the yields of CaCO3 formation induced by the different organic acids were compared. The metabolism of organic acid by the metabolites of S. cerevisiae was also assessed in vitro. The SEM-EDS and XRD results showed that only acetate acid, pyruvic acid, and α-ketoglutaric acid could induce CaCO3 formation, and the weight order of the produced CaCO3 was pyruvic acid, acetate acid, α-ketoglutaric acid. In addition, the presence of only yeast metabolites and the initial neutral or alkaline environment also limited the CaCO3 formation. These results illustrated that organic acid oxidation intracellularly, especially the tricarboxylic acid cycle, was the major mechanism, and the CaCO3 yield was related to the amount of CO2 produced by the metabolism of organic acids. These findings will deepen the knowledge of the mineralization capacity of S. cerevisiae and provide a theoretical basis for the future application of yeast as an alternative microorganism in MICP.
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Affiliation(s)
- Tianxiao Li
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
- Joint International Research Laboratory of Environmental and Social Archaeology, Shandong University, Qingdao, China
- Institute of Cultural Heritage, Shandong University, Qingdao, China
| | - Huabing Zhang
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
| | - Xiang Tan
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
| | - Rui Zhang
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
| | - Fasi Wu
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
| | - Zongren Yu
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
| | - Bomin Su
- Dunhuang Academy, The Conservation Institute, Dunhuang, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Dunhuang, China
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Chen M, Gowthaman S, Nakashima K, Takano C, Kawasaki S. Baseline investigation on soil solidification through biocementation using airborne bacteria. Front Bioeng Biotechnol 2023; 11:1216171. [PMID: 37388775 PMCID: PMC10300444 DOI: 10.3389/fbioe.2023.1216171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 06/02/2023] [Indexed: 07/01/2023] Open
Abstract
Microbial induced carbonate precipitation (MICP) through the ureolysis metabolic pathway is one of the most studied topics in biocementation due to its high efficiency. Although excellent outcomes have proved the potential of this technique, microorganisms face some obstacles when considering complicated situations in the real field, such as bacterial adaptability and survivability issues. This study made the first attempt to seek solutions to this issue from the air, exploring ureolytic airborne bacteria with resilient features to find a solution to survivability issues. Samples were collected using an air sampler in Sapporo, Hokkaido, a cold region where sampling sites were mostly covered with dense vegetation. After two rounds of screening, 12 out of 57 urease-positive isolates were identified through 16S rRNA gene analysis. Four potentially selected strains were then evaluated in terms of growth pattern and activity changes within a range of temperatures (15°C-35°C). The results from sand solidification tests using two Lederbergia strains with the best performance among the isolates showed an improvement in unconfined compressive strength up to 4-8 MPa after treatment, indicating a high MICP efficiency. Overall, this baseline study demonstrated that the air could be an ideal isolation source for ureolytic bacteria and laid a new pathway for MICP applications. More investigations on the performance of airborne bacteria under changeable environments may be required to further examine their survivability and adaptability.
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Affiliation(s)
- Meiqi Chen
- Laboratory of Biotechnology for Resources Engineering, Graduate School of Engineering, Hokkaido University, Sapporo, Japan
| | - Sivakumar Gowthaman
- Department of Engineering Technology, Faculty of Technology, University of Jaffna, Kilinochchi, Sri Lanka
| | - Kazunori Nakashima
- Laboratory of Biotechnology for Resources Engineering, Faculty of Engineering, Hokkaido University, Sapporo, Japan
| | - Chikara Takano
- Laboratory of Biotechnology for Resources Engineering, Faculty of Engineering, Hokkaido University, Sapporo, Japan
| | - Satoru Kawasaki
- Laboratory of Biotechnology for Resources Engineering, Faculty of Engineering, Hokkaido University, Sapporo, Japan
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11
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Bourdin V, Charlier P, Crevat S, Slimani L, Chaussain C, Kielbasa M, Pible O, Armengaud J. Deep Paleoproteotyping and Microtomography Revealed No Heart Defect nor Traces of Embalming in the Cardiac Relics of Blessed Pauline Jaricot. Int J Mol Sci 2023; 24:ijms24033011. [PMID: 36769339 PMCID: PMC9917977 DOI: 10.3390/ijms24033011] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 01/22/2023] [Accepted: 01/23/2023] [Indexed: 02/09/2023] Open
Abstract
Scientific examination of the heart of Blessed Pauline Jaricot-a French missionary figure-was carried out in 2022. As tandem mass spectrometry proteotyping has proven to be valuable to obtain the broad taxonomic repertoire of a given sample without any a priori information, we aimed at exploring the conditions of preservation of the relics and possible conditions of death. Metaproteomics and high-resolution microtomography imaging approaches were combined. A dataset comprising 6731 high-resolution MS/MS spectra was acquired and 968 of these spectra could be assigned to specific peptidic biomolecules. Based on the taxonomical information encompassed by the identified peptide sequences, 5 phyla were identified amongst eukaryota (94% of the biomass): Ascomycota (55%), with the species Aspergillus versicolor, Trichophyton mentagrophytes and Aspergillus glaucus, corresponding to expected cadaverous fungal flora; Chordata (42%), represented by a unique species, Homo sapiens; Streptophyta (3%); and Arthropoda (traces). Bacteria (6% of the biomass) were poorly represented. No trace of embalming substance could be retrieved, nor any pathogens. Imaging evidenced no heart defect nor embalming traces. No evidence that was inconsistent with natural and spontaneous conservation could be retrieved. This study prefigures the power of modern molecular techniques such as paleoproteotyping coupled to microtomography to gain insight into historical relics.
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Affiliation(s)
- Virginie Bourdin
- Museum of Quai Branly—Jacques Chirac, 222 rue de l’Université, 75007 Paris, France
- Laboratory Anthropology, Archaeology, Biology (LAAB), UFR of Health Sciences (Paris-Saclay University), 2 avenue de la Source de la Bièvre, 78180 Montigny-Le-Bretonneux, France
- Correspondence:
| | - Philippe Charlier
- Museum of Quai Branly—Jacques Chirac, 222 rue de l’Université, 75007 Paris, France
- Laboratory Anthropology, Archaeology, Biology (LAAB), UFR of Health Sciences (Paris-Saclay University), 2 avenue de la Source de la Bièvre, 78180 Montigny-Le-Bretonneux, France
- Foundation Anthropology, Archaeology, Biology (FAAB)—Institut de France, 23 quai de Conti, 75006 Paris, France
| | - Stéphane Crevat
- Arlliage, 6 Grande Route des Feuillants, F-69001 Lyon, France
| | - Lotfi Slimani
- Université Paris Cité, Laboratory URP2496 Orofacial Pathologies, Imaging and Biotherapies, PIV Platform, Dental School, 1 rue Maurice Arnoux, 92120 Montrouge, France
| | - Catherine Chaussain
- Université Paris Cité, Laboratory URP2496 Orofacial Pathologies, Imaging and Biotherapies, PIV Platform, Dental School, 1 rue Maurice Arnoux, 92120 Montrouge, France
- APHP, Hôpital Bretonneau, GH Nord Université Paris Cité, 75018 Paris, France
| | - Mélodie Kielbasa
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols-sur-Cèze, France
| | - Olivier Pible
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols-sur-Cèze, France
| | - Jean Armengaud
- Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200 Bagnols-sur-Cèze, France
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12
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Elmi F, Etemadifar Z, Emtiazi G. Biosynthesis of Calcite Nanocrystal by a Novel Polyextremophile Bhargavaea cecembensis-Related Strain Isolated from Sandy Soil. MICROBIAL ECOLOGY 2023; 85:698-707. [PMID: 35190857 DOI: 10.1007/s00248-022-01977-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 01/28/2022] [Indexed: 06/14/2023]
Abstract
Urease-producing bacteria are abundant in soils, which can precipitate calcium carbonate nanocrystals by enzymatic hydrolysis of urea in the presence of calcium ions. This process is known as microbially induced calcium carbonate precipitation (MICP), and it has received much attention in recent years as an eco-friendly technology. Therefore, the purpose of the present study was to isolate local extremophile bacterial strains capable of producing calcium carbonate. Among a total of 44 isolated urease-producing strains from sandy soils, one strain with a high level of urease activity (8.16 U/ml) and production of a large amount of calcium carbonate (410 mg/100 ml) was selected for further investigation. 16S rRNA gene sequencing showed that this strain had 99.66% sequence identity to Bhargavaea cecembensis. The SEM-EDX and XRD analyses indicated that irregular vaterite and aggregated nanocalcite were the dominant polymorphs produced by this strain. The size of these nanocalcite crystals ranged between 25 and 42 nm. The selected strain showed high levels of tolerance to different conditions of temperature, pH, and salinity. This strain grows at high temperatures up to 50 °C, alkaline pH (9-11), and high concentrations of NaCl (20-25% w/v). Flow cytometry analysis demonstrated 96% cell viability of the isolated strain after desiccation stress. Bhargavaea was first reported in 2009 as a new genus, and it belongs to the Firmicutes. So far, there has been no report on its MICP potential. The present study is the first one to report nanocrystal calcium carbonate precipitation in polyextremophile Bhargavaea cecembensis, which makes it a suitable candidate for bio-cementation under extreme circumstances.
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Affiliation(s)
- Fatemeh Elmi
- Department of Cell and Molecular Biology & Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, 8174673441, Iran
| | - Zahra Etemadifar
- Department of Cell and Molecular Biology & Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, 8174673441, Iran.
| | - Giti Emtiazi
- Department of Cell and Molecular Biology & Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, 8174673441, Iran
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13
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Improvement of microstructure of cementitious composites by microbially-induced calcite precipitation. World J Microbiol Biotechnol 2023; 39:76. [PMID: 36637547 DOI: 10.1007/s11274-023-03517-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 01/03/2023] [Indexed: 01/14/2023]
Abstract
In this study, microstructural improvement of cementitious composites was achieved by bacterial CaCO3 precipitation using three bacterial species, namely Sporosarcina pasteurii, Bacillus cereus, and Actinobacteria sp. M135-3, respectively. The final product was comparatively investigated regarding the physical effects of urease activity of different cells on the mortar in the long term.Microstructural improvement was determined by evaluating the pore structure by determining the increase in strength, decrease in water absorption, and capillary water absorption rate of the cement mortars having different microorganism concentrations (106-109 bacteria/ml). These measurements were taken on bacteria-containing and control samples on the 2nd, 7th, 28th, and 56th days, respectively. In addition, calcite and vaterite as calcium carbonate polymorphs formed by the precipitation of calcium carbonate by three types of bacteria were identified by Scanning electron microscopy and energy dispersive X-ray spectroscopy (SEM/EDS), X-ray diffraction (XRD) and Thermogravimetric analysis - Differential scanning calorimetry (TGA-DSC) analyzes.The bacteria-containing mortar samples showed that bacterial species and concentrations directly affect cementitious composites' mechanical and physical properties. Composite samples containing bacteria resulted in statistically significant microstructural improvements measured by higher mechanical strength, lower water absorption value, and capillary water absorption rate compared to control samples, especially at early ages. However, the effect of microbial calcite formation diminishes at later ages, especially at 56-days, attributed to the bacteria cells losing their vitality and integrity and forming spaces inside the mortars.
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14
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Timoncini A, Costantini F, Bernardi E, Martini C, Mugnai F, Mancuso FP, Sassoni E, Ospitali F, Chiavari C. Insight on bacteria communities in outdoor bronze and marble artefacts in a changing environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 850:157804. [PMID: 35932861 DOI: 10.1016/j.scitotenv.2022.157804] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/12/2022] [Accepted: 07/30/2022] [Indexed: 06/15/2023]
Abstract
Epilithic bacteria play a fundamental role in the conservation of cultural heritage (CH) materials. On stones, bacterial communities cause both degradation and bioprotection actions. Bronze biocorrosion in non-burial conditions is rarely studied. Only few studies have examined the relationship between bacteria communities and the chemical composition of patinas (surface degradation layers). A better comprehension of bacterial communities growing on our CH is fundamental not only to understand the related decay mechanisms but also to foresee possible shifts in their composition due to climate change. The present study aims at (1) characterizing bacterial communities on bronze and marble statues; (2) evaluating the differences in bacterial communities' composition and abundance occurring between different patina types on different statues; and (3) providing indications about a representative bacterial community which can be used in laboratory tests to better understand their influence on artefact decay. Chemical and biological characterization of different patinas were carried out by sampling bronze and marble statues in Bologna and Ravenna (Italy), using EDS/Raman spectroscopy and MinION-based 16SrRNA sequencing. Significant statistical differences were found in bacterial composition between marble and bronze statues, and among marble patinas in different statues and in the same statue. Marble surfaces showed high microbial diversity and were characterized mainly by Cyanobacteria, Proteobacteria and Deinococcus-Thermus. Bronze patinas showed low taxa diversity and were dominated by copper-resistant Proteobacteria. The copper biocidal effect is evident in greenish marble areas affected by the leaching of copper salts, where the bacterial community is absent. Here, Ca and Cu oxalates are present because of the biological reaction of living organisms to Cu ions, leading to metabolic product secretions, such as oxalic acid. Therefore, a better knowledge on the interaction between bacteria communities and patinas has been achieved.
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Affiliation(s)
- Andrea Timoncini
- Department of Cultural Heritage, University of Bologna, Via degli Ariani 1, 48121 Ravenna, Italy
| | - Federica Costantini
- Department of Biological, Geological and Environmental Science, UOS Ravenna, University of Bologna, Via Sant'Alberto 163, 48123 Ravenna, Italy; Interdepartmental Center for Industrial Research Renewable Sources, Environment, Sea and Energy, University of Bologna, Ravenna, Italy; Interdepartmental Research Center for Environmental Sciences, University of Bologna, Ravenna, Italy
| | - Elena Bernardi
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Carla Martini
- Department of Industrial Engineering, University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Francesco Mugnai
- Department of Biological, Geological and Environmental Science, UOS Ravenna, University of Bologna, Via Sant'Alberto 163, 48123 Ravenna, Italy
| | - Francesco Paolo Mancuso
- Department of Earth and Marine Sciences (DiSTeM), University of Palermo, Viale delle Scienze Ed. 16, 90128 Palermo, Italy
| | - Enrico Sassoni
- Department Of Civil, Chemical, Environmental and Materials Engineering, University of Bologna, Via Terracini 28, 40131 Bologna, Italy
| | - Francesca Ospitali
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Cristina Chiavari
- Department of Cultural Heritage, University of Bologna, Via degli Ariani 1, 48121 Ravenna, Italy.
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Abdelsamad R, Al Disi Z, Abu-Dieyeh M, Al-Ghouti MA, Zouari N. Evidencing the role of carbonic anhydrase in the formation of carbonate minerals by bacterial strains isolated from extreme environments in Qatar. Heliyon 2022; 8:e11151. [PMID: 36311368 PMCID: PMC9614864 DOI: 10.1016/j.heliyon.2022.e11151] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 11/09/2021] [Accepted: 01/01/2022] [Indexed: 11/05/2022] Open
Abstract
Calcium carbonate, one of the most abundant minerals in the geological records is considered as primary source of the carbon reservoir. The role of microorganisms in the biotic precipitation of calcium carbonate has been extensively investigated, especially at extreme life conditions. In Qatar, Sabkhas which are microbial ecosystems housing biomineralizing bacteria, have been carefully studied as unique sites of microbial dolomite formation. Dolomite (CaMg(CO3)2 is an important carbonate mineral forming oil reservoir rocks; however, dolomite is rarely formed in modern environments. The enzyme carbonic anhydrase is present in many living organisms, performs interconversion between CO2 and the bicarbonate ion. Thus, carbonic anhydrase is expected to accelerate both carbonate rock dissolution and CO2 uptake at the same time, serving as carbonite source to carbonites-forming bacteria. This study gathered cross-linked data on the potential role of the carbonic anhydrase excreted by mineral-forming bacteria, isolated from two different extreme environments in Qatar. Dohat Faishakh Sabkha, is a hypersaline coastal Sabkha, from where various strains of the bacterium Virgibacillus were isolated. Virgibacillus can -not only-mediate carbonate mineral formation, but also contributes to magnesium incorporation into the carbonate minerals, leading to the formation of high magnesium calcite. The latter is considered as precursor for dolomite formation. In addition, bacterial strains isolated from marine sediments, surrounding coral reef in Qatar sea, would provide additional knowledge on the role of carbonic anhydrase in mineral formation. Here, the quantification of the two mostly described activities of carbonic anhydrase; esterase and hydration reactions were performed. Mineral-forming strains were shown to exhibit high activities as opposed to the non-forming minerals, which confirms the relation between the presence of active carbonic anhydrase combined with elevated metabolic activity and the biomineralizing potential of the bacterial strains. The highest specific intracellular carbonic anhydrase activity; as both esterase and hydration (i.e., 66 ± 3 and 583000 ± 39000 WAU/108 cells respectively), was evidenced in mineral-forming strains as opposed to non-mineral forming strains (i.e., 6 ±. 0.5 and 1223 ± 61 WAU/108cells) respectively. These findings would contribute to the understanding of the mechanism of microbially mediated carbonate precipitation. This role may be both in capturing CO2 as source of carbonate, and partial solubilization of the formed minerals allowing incorporation of Mg instead of calcium, before catalyzing again the formation of more deposition of carbonates.
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16
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Calcite Nanocrystal Production Using Locally Isolated Ureolytic Bacteria and Assessing Their Resistance to Extreme Conditions. IRANIAN JOURNAL OF SCIENCE AND TECHNOLOGY, TRANSACTIONS A: SCIENCE 2022. [DOI: 10.1007/s40995-022-01366-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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17
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Koning K, McFarlane R, Gosse JT, Lawrence S, Carr L, Horne D, Van Wagoner N, Boddy CN, Cheeptham N. Biomineralization in Cave Bacteria—Popcorn and Soda Straw Crystal Formations, Morphologies, and Potential Metabolic Pathways. Front Microbiol 2022; 13:933388. [PMID: 35847116 PMCID: PMC9283089 DOI: 10.3389/fmicb.2022.933388] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Accepted: 05/25/2022] [Indexed: 11/29/2022] Open
Abstract
Caves are extreme, often oligotrophic, environments that house diverse groups of microorganisms. Many of these microbes can perform microbiologically induced carbonate precipitation (MICP) to form crystalline secondary cave deposits known as speleothems. The urease family is a group of enzymes involved in MICP that catalyze the breakdown of urea, which is a source of energy, into ammonia and carbonate. Carbonate anions are effluxed to the extracellular surface of the bacterium where it then binds to environmental calcium to form calcium carbonate which then continues to grow in crystal form. Here, we studied bacterial communities from speleothems collected from the Iron Curtain Cave (ICC) in Chilliwack, B.C., Canada, to characterize these organisms and determine whether urease-positive (U+) bacteria were present in the cave and their potential impact on speleothem formation. The ICC is a carbonate cave located on the northside of Chipmunk Ridge, presenting a unique environment with high iron content sediment and limestone structures throughout. With six pools of water throughout the cave, the environment is highly humid, with temperatures ranging between 4 and 12°C depending on the time of year. Ninety-nine bacterial strains were isolated from popcorn (PCS) and soda straw (SSS) speleothems. These isolates were screened for urease enzymatic activity, with 11 candidates found to be urease-positive. After incubation, species-specific crystal morphologies were observed. Popcorn speleothem provided more bacterial diversity overall when compared to soda straw speleothem when examined under a culture-based method. Nearly twice as many U+ isolates were isolated from popcorn speleothems compared to soda straw speleothems. The U+ candidates were identified to the genus level by 16S rRNA analysis, and two isolates underwent whole-genome sequencing. Two novel species were identified as Sphingobacterium sp. PCS056 and Pseudarthrobacter sp. SSS035. Both isolates demonstrated the most crystal production as well as the most morphologically dissimilar crystal shapes in broth culture and were found to produce crystals as previously observed in both agar and broth media. The results from this study are consistent with the involvement of urease-positive bacteria isolated from the ICC in the formation of cave speleothems. 16S rRNA sequencing revealed a diverse set of microbes inhabiting the speleothems that have urease activity. Whole-genome sequencing of the two chosen isolates confirmed the presence of urease pathways, while revealing differences in urease pathway structure and number. This research contributes to understanding microbial-associated cave formation and degradation, with applications to cave conservation, microbiota composition, and their role in shaping the cave environment.
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Affiliation(s)
- Keegan Koning
- Department of Biology, Faculty of Science, Thompson Rivers University, Kamloops, BC, Canada
| | - Richenda McFarlane
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Jessica T. Gosse
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Sara Lawrence
- Department of Biology, Faculty of Science, Thompson Rivers University, Kamloops, BC, Canada
| | - Lynnea Carr
- Department of Biology, Faculty of Science, Thompson Rivers University, Kamloops, BC, Canada
| | - Derrick Horne
- The University of British Columbia Bioimaging Facility, Biological Sciences Building, Vancouver, BC, Canada
| | - Nancy Van Wagoner
- Department of Physical Sciences, Faculty of Science, Thompson Rivers University, Kamloops, BC, Canada
| | - Christopher N. Boddy
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada
| | - Naowarat Cheeptham
- Department of Biology, Faculty of Science, Thompson Rivers University, Kamloops, BC, Canada
- *Correspondence: Naowarat Cheeptham,
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18
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Šovljanski O, Pezo L, Grahovac J, Tomić A, Ranitović A, Cvetković D, Markov S. Best-performing Bacillus strains for microbiologically induced CaCO3 precipitation: Screening of relative influence of operational and environmental factors. J Biotechnol 2022; 350:31-41. [DOI: 10.1016/j.jbiotec.2022.04.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 03/14/2022] [Accepted: 04/07/2022] [Indexed: 12/15/2022]
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19
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Wei H, Fan Y, Sun L, Du H, Liang R. Experimental Study on High-Temperature Damage Repair of Concrete by Soybean Urease Induced Carbonate Precipitation. MATERIALS 2022; 15:ma15072436. [PMID: 35407771 PMCID: PMC8999787 DOI: 10.3390/ma15072436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/16/2022] [Accepted: 03/23/2022] [Indexed: 11/29/2022]
Abstract
In this study, the effects of soybean-urease-induced carbonate precipitation on a high-temperature damage repair of concrete were explored. C50 concrete specimens were exposed to high temperatures from 300 to 600 °C, then cooled to an ambient temperature and repaired by two different methods. The influences of the damage temperature and repair methods on surface film thickness, average infrared temperature increase, water absorption, and compressive strength were investigated. Scanning electron microscopy (SEM) images were carried out to further study the mechanism involved. The results revealed that the white sediments on the surface of the repaired specimens were calcium carbonate (CaCO3) and calcium oxalate (CaC2O4). The surface film thickness reached up to 1.94 mm after repair. The average infrared temperature increase in the repaired specimens at different damage temperatures was averagely reduced by about 80% compared with that before the repair. It showed more obvious repair effects at higher temperatures in water absorption and compressive strength tests; the compressive strength of repaired specimens was 194% higher than that before repairs at 600 °C. A negative pressure method was found to be more effective than an immersion method. This study revealed the utilization of SICP on repairing high-temperature damage of concrete is feasible theoretically.
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Affiliation(s)
| | | | | | - Hongxiu Du
- Correspondence: (H.D.); (R.L.); Tel.: +86-139-0343-8277 (R.L.)
| | - Renwang Liang
- Correspondence: (H.D.); (R.L.); Tel.: +86-139-0343-8277 (R.L.)
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20
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Song M, Ju T, Meng Y, Han S, Lin L, Jiang J. A review on the applications of microbially induced calcium carbonate precipitation in solid waste treatment and soil remediation. CHEMOSPHERE 2022; 290:133229. [PMID: 34896177 DOI: 10.1016/j.chemosphere.2021.133229] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 11/08/2021] [Accepted: 12/06/2021] [Indexed: 06/14/2023]
Abstract
Improper disposal and accumulation of solid waste can cause a number of environmental problems, such as the heavy metal contamination of soil. Microbially induced calcium carbonate precipitation (MICP) is considered as a promising technology to solve many environmental problems. Calcium-based solid waste can be utilized as an alternative source of calcium for the MICP process, and carbonate-based biominerals can be used for soil remediation, solid waste treatment, remediation of construction concrete, and generation of bioconcrete. This paper describes the metabolic pathways and mechanisms of microbially induced calcium carbonate precipitation and highlights the value of MICP for solid waste treatment and soil remediation applications. The factors affecting the effectiveness of MICP are discussed and analyzed through an overview of recent studies on the application of MICP in environmental engineering. The paper also summarizes the current challenges for the large-scale application of this innovative technology. In prospective study, MICP can be an effective alternative to conventional technologies in solid waste treatment, soil remediation and CO2 sequestration, as it can reduce negative environmental impacts and provide long-term economic benefits.
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Affiliation(s)
- Mengzhu Song
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Tongyao Ju
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Yuan Meng
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Siyu Han
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Li Lin
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Jianguo Jiang
- School of Environment, Tsinghua University, Beijing, 100084, China.
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21
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Abstract
A person spends most of his life in rooms built from various building materials; therefore, the optimization of the human environment is an important and complex task that requires interdisciplinary approaches. Within the framework of the new theory of geomimetics in the building science of materials, the concepts of technogenic metasomatism, the affinity of microstructures, and the possibilities of creating composites that respond to operational loads and can self-heal defects have been created. The article aims to introduce the basic principles of the science of geomimetics in terms of the design and synthesis of building materials. The study’s novelty lies in the concept of technogenic metasomatism and the affinity of microstructures developed by the authors. Novel technologies have been proposed to produce a wide range of composite binders (including waterproof and frost-resistant gypsum binders) using novel forms of source materials with high free internal energy. The affinity microstructures for anisotropic materials have been formulated, which involves the design of multilayered composites and the repair of compounds at three levels (nano-, micro-, macro-). The proposed theory of technogenic metasomatism in the building science of materials represents an evolutionary stage for composites that are categorized by their adaptation to evolving circumstances in the operation of buildings and structures. Materials for three-dimensional additive technologies in construction are proposed, and examples of these can be found in nature. Different ways of applying our concept for the design of building materials in future works are proposed.
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22
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Abstract
Cultural heritage buildings of stone construction require careful restorative actions to maintain them as close to the original condition as possible. This includes consolidation and cleaning of the structure. Traditional consolidants may have poor performance due to structural drawbacks such as low adhesion, poor penetration and flexibility. The requirement for organic consolidants to be dissolved in volatile organic compounds may pose environmental and human health risks. Traditional conservation treatments can be replaced by more environmentally acceptable, biologically-based, measures, including bioconsolidation using whole bacterial cells or cell biomolecules; the latter include plant or microbial biopolymers and bacterial cell walls. Biocleaning can employ microorganisms or their extracted enzymes to remove inorganic and organic surface deposits such as sulfate crusts, animal glues, biofilms and felt tip marker graffiti. This review seeks to provide updated information on the innovative bioconservation treatments that have been or are being developed.
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23
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Aragoni MC, Giacopetti L, Arca M, Carcangiu G, Columbu S, Gimeno D, Isaia F, Lippolis V, Meloni P, Ezquerra AN, Podda E, Rius J, Vallcorba O, Pintus A. Ammonium monoethyloxalate (AmEtOx): a new agent for the conservation of carbonate stone substrates. NEW J CHEM 2021. [DOI: 10.1039/d0nj06001a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Ammonium monoethyloxalate (AmEtOx) is proposed as a consolidanting agent for carbonate stones such as biomicritic limestone and marble, resulting in the formation of a microcrystalline passivating phase of calcium oxalate (whewellite and weddellite).
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