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Acharya BR, Gill SP, Kaundal A, Sandhu D. Strategies for combating plant salinity stress: the potential of plant growth-promoting microorganisms. FRONTIERS IN PLANT SCIENCE 2024; 15:1406913. [PMID: 39077513 PMCID: PMC11284086 DOI: 10.3389/fpls.2024.1406913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 06/24/2024] [Indexed: 07/31/2024]
Abstract
Global climate change and the decreasing availability of high-quality water lead to an increase in the salinization of agricultural lands. This rising salinity represents a significant abiotic stressor that detrimentally influences plant physiology and gene expression. Consequently, critical processes such as seed germination, growth, development, and yield are adversely affected. Salinity severely impacts crop yields, given that many crop plants are sensitive to salt stress. Plant growth-promoting microorganisms (PGPMs) in the rhizosphere or the rhizoplane of plants are considered the "second genome" of plants as they contribute significantly to improving the plant growth and fitness of plants under normal conditions and when plants are under stress such as salinity. PGPMs are crucial in assisting plants to navigate the harsh conditions imposed by salt stress. By enhancing water and nutrient absorption, which is often hampered by high salinity, these microorganisms significantly improve plant resilience. They bolster the plant's defenses by increasing the production of osmoprotectants and antioxidants, mitigating salt-induced damage. Furthermore, PGPMs supply growth-promoting hormones like auxins and gibberellins and reduce levels of the stress hormone ethylene, fostering healthier plant growth. Importantly, they activate genes responsible for maintaining ion balance, a vital aspect of plant survival in saline environments. This review underscores the multifaceted roles of PGPMs in supporting plant life under salt stress, highlighting their value for agriculture in salt-affected areas and their potential impact on global food security.
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Affiliation(s)
- Biswa R. Acharya
- US Salinity Laboratory, USDA-ARS, Riverside, CA, United States
- College of Natural and Agricultural Sciences, University of California Riverside, Riverside, CA, United States
| | - Satwinder Pal Gill
- Plants, Soils, and Climate, College of Agricultural and Applied Sciences, Utah State University, Logan, UT, United States
| | - Amita Kaundal
- Plants, Soils, and Climate, College of Agricultural and Applied Sciences, Utah State University, Logan, UT, United States
| | - Devinder Sandhu
- US Salinity Laboratory, USDA-ARS, Riverside, CA, United States
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de Lima Silva JR, Dos Santos LB, Hassan W, Kamdem JP, Duarte AE, Soufan W, El Sabagh A, Ibrahim M. Exploring the therapeutic potential of the oxygenated monoterpene linalool in alleviating saline stress effects on Allium cepa L. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:47598-47610. [PMID: 38997599 DOI: 10.1007/s11356-024-34285-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 07/02/2024] [Indexed: 07/14/2024]
Abstract
Sodium chloride (NaCl) can cause oxidative stress in plants, which represents a potential obstacle to the development of monocultures worldwide. Onion (Allium cepa L.) is a famous vegetable consumed and used in world cuisine. In the present study, we analyzed the influence of soil physicochemical profile and the remedial capacity of linalool on seed emergence, roots, and leaf growth in onions subjected to salt stress, as well as its in vivo and in vitro antioxidant potential, Fe2+chelating activity, and reducing power of Fe3+. The outcome of the soil analysis established the following order of abundance: sulfur (S) > calcium (Ca) > potassium (K) > magnesium (Mg) > sodium (Na). NaCl (150 mM) significantly reduced the emergence speed index (ESI), leaf and root length, while increasing the peroxidation content. The length of leaves and roots significantly increased after treatment with linalool (300 and 500 μg/mL). Our data showed negative correlations between seed emergence and K+ concentration, which was reversed after treatments. Linalool (500 μg/mL) significantly reduced oxidative stress, but increased Fe2+ concentration and did not show potential to reduce Fe3+. The in vivo antioxidant effect of linalool is thought to primarily result from an enzymatic activation process. This mechanism underscores its potential as a therapeutic agent for oxidative stress-related conditions. Further investigation into this process could unveil new avenues for antioxidant therapy.
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Affiliation(s)
| | - Larisse Bernardino Dos Santos
- Biology and Toxicology Laboratory, Regional University of Cariri (URCA), Crato, CE, Brazil
- Microscopy Laboratory, Regional University of Cariri (URCA), Crato, CE, Brazil
| | - Waseem Hassan
- Institute of Chemical Sciences, University of Peshawar, Peshawar, Khyber Pakhtunkhwa, 25120, Pakistan
| | - Jean Paul Kamdem
- Biology and Toxicology Laboratory, Regional University of Cariri (URCA), Crato, CE, Brazil
- Department of Biochemistry, Microbiology and Immunology (BMI), College of Medicine, University of Saskatchewan, 107 Wiggins Road, Saskatoon, SK, S7N 5E5, Canada
| | - Antonia Eliene Duarte
- Biology and Toxicology Laboratory, Regional University of Cariri (URCA), Crato, CE, Brazil
- Institute of Chemical Sciences, University of Peshawar, Peshawar, Khyber Pakhtunkhwa, 25120, Pakistan
| | - Walid Soufan
- Department of Plant Production, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh, 11451, Saudi Arabia
| | - Ayman El Sabagh
- Department of Field Crops, Faculty of Agriculture, Siirt University, Siirt, Turkey
- Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Shaikh, 33516, Egypt
| | - Mohammad Ibrahim
- Department of Chemistry, Abdul Wali Khan University Mardan (AWKUM) KPK, Mardan, 23200, Pakistan.
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Noor J, Ahmad I, Ullah A, Iqbal B, Anwar S, Jalal A, Okla MK, Alaraidh IA, Abdelgawad H, Fahad S. Enhancing saline stress tolerance in soybean seedlings through optimal NH 4+/NO 3- ratios: a coordinated regulation of ions, hormones, and antioxidant potential. BMC PLANT BIOLOGY 2024; 24:572. [PMID: 38890574 PMCID: PMC11184694 DOI: 10.1186/s12870-024-05294-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 06/13/2024] [Indexed: 06/20/2024]
Abstract
BACKGROUND Nitrogen (N) availability is crucial in regulating plants' abiotic stress resistance, particularly at the seedling stage. Nevertheless, plant responses to N under salinity conditions may vary depending on the soil's NH4+ to NO3- ratio. METHODS In this study, we investigated the effects of different NH4+:NO3- ratios (100/0, 0/100, 25/75, 50/50, and 75/25) on the growth and physio-biochemical responses of soybean seedlings grown under controlled and saline stress conditions (0-, 50-, and 100-mM L- 1 NaCl and Na2SO4, at a 1:1 molar ratio). RESULTS We observed that shoot length, root length, and leaf-stem-root dry weight decreased significantly with increased saline stress levels compared to control. Moreover, there was a significant accumulation of Na+, Cl-, hydrogen peroxide (H2O2), and malondialdehyde (MDA) but impaired ascorbate-glutathione pools (AsA-GSH). They also displayed lower photosynthetic pigments (chlorophyll-a and chlorophyll-b), K+ ion, K+/Na+ ratio, and weakened O2•--H2O2-scavenging enzymes such as superoxide dismutase, catalase, peroxidase, monodehydroascorbate reductase, glutathione reductase under both saline stress levels, while reduced ascorbate peroxidase, and dehydroascorbate reductase under 100-mM stress, demonstrating their sensitivity to a saline environment. Moreover, the concentrations of proline, glycine betaine, total phenolic, flavonoids, and abscisic acid increased under both stresses compared to the control. They also exhibited lower indole acetic acid, gibberellic acid, cytokinins, and zeatine riboside, which may account for their reduced biomass. However, NH4+:NO3- ratios caused a differential response to alleviate saline stress toxicity. Soybean seedlings supplemented with optimal ratios of NH4+:NO3- (T3 = 25:75 and T = 4 50:50) displayed lower Na+ and Cl- and ABA but improved K+ and K+/Na+, pigments, growth hormones, and biomass compared to higher NH4+:NO3- ratios. They also exhibited higher O2•--H2O2-scavenging enzymes and optimized H2O2, MDA, and AsA-GSH pools status in favor of the higher biomass of seedlings. CONCLUSIONS In summary, the NH4+ and NO3- ratios followed the order of 50:50 > 25:75 > 0:100 > 75:25 > 100:0 for regulating the morpho-physio-biochemical responses in seedlings under SS conditions. Accordingly, we suggest that applying optimal ratios of NH4+ and NO3- (25/75 and 50:50) can improve the resistance of soybean seedlings grown in saline conditions.
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Affiliation(s)
- Javaria Noor
- Department of Botany, Islamia College Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Izhar Ahmad
- Department of Botany, Islamia College Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan.
| | - Abd Ullah
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, People's Republic of China
| | - Babar Iqbal
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
| | - Shazma Anwar
- Department of Agronomy, Faculty of Crop Production Sciences, The University of Agriculture, Peshawar, 25000, Pakistan
| | - Arshad Jalal
- School of Engineering, Department of Plant Health, Rural Engineering and Soils, São Paulo State University - UNESP-FEIS, Ilha Solteira, São Paulo, 15385-000, Brazil
| | - Mohammad K Okla
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Ibrahim A Alaraidh
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Hamada Abdelgawad
- Integrated Molecular Plant Physiology Research, Department of Biology, University of Antwerp, Antwerp, 2020, Belgium
| | - Shah Fahad
- Department of Agronomy, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, 23200, Pakistan.
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Pande CB, Kushwaha NL, Alawi OA, Sammen SS, Sidek LM, Yaseen ZM, Pal SC, Katipoğlu OM. Daily scale air quality index forecasting using bidirectional recurrent neural networks: Case study of Delhi, India. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 351:124040. [PMID: 38685551 DOI: 10.1016/j.envpol.2024.124040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 04/01/2024] [Accepted: 04/22/2024] [Indexed: 05/02/2024]
Abstract
This research was established to accurately forecast daily scale air quality index (AQI) which is an essential environmental index for decision-making. Researchers have projected different types of models and methodologies for AQI forecasting, such as statistical techniques, machine learning (ML), and most recently deep learning (DL) models. The modelling development was adopted for Delhi city, India which is a major city with air pollution issues simialir to entire urban cities of India especially during winter seasons. This research was predicted AQI using different versions of DL models including Long-Short Term Memory (LSTM), Bidirectional LSTM (Bi-LSTM) and Bidirectional Recurrent Neural Networks (Bi-RNN) in addition to Kernel Ridge Regression (KRR). Results indicated that Bi-RNN model consistently outperformed the other models in both training and testing phases, while the KRR model consistently displayed the weakest performance. The outstanding performance of the models development displayed the requirement of adequate data to train the models. The outcomes of the models showed that LSTM, BI-LSTM, KRR had lower performance compared with Bi-RNN models. Statistically, Bi-RNN model attained maximum cofficient of determination (R2 = 0.954) and minimum root mean square error (RMSE = 25.755). The proposed model in this research revealed the robust predictable to provide a valuable base for decision-making in the expansion of combined air pollution anticipation and control policies targeted at addressing composite air pollution problems in the Delhi city.
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Affiliation(s)
- Chaitanya Baliram Pande
- Institute of Energy Infrastructure, Universiti Tenaga Nasional, Kajang, 43000, Malaysia; New Era and Development in Civil Engineering Research Group, Scientific Research Center, Al-Ayen University, Thi-Qar, Nasiriyah, 64001, Iraq.
| | - Nand Lal Kushwaha
- Department of Soil and Water Engineering, Punjab Agricultural University, Ludhiana, Punjab, 141004, India; Division of Agricultural Engineering, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Omer A Alawi
- Department of Thermofluids, Faculty of Mechanical Engineering, Universiti Teknologi Malaysia, 81310, Skudai, Johor Bahru, Malaysia
| | - Saad Sh Sammen
- Department of Civil Engineering, College of Engineering, Diyala University, Diyala Governorate, Iraq
| | - Lariyah Mohd Sidek
- Institute of Energy Infrastructure, Universiti Tenaga Nasional, Kajang, 43000, Malaysia
| | - Zaher Mundher Yaseen
- Civil and Environmental Engineering Department, King Fahd University of Petroleum & Minerals, Dhahran, 31261, Saudi Arabia
| | - Subodh Chandra Pal
- Department of Geography, The University of Burdwan, Purba Bardhaman, West Bengal, 713104, India
| | - Okan Mert Katipoğlu
- Faculty of Engineering and Architecture, Department of Civil Engineering, Erzincan Binali Yıldırım University, 24100, Erzincan, Turkey
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Bediako-Kyeremeh B, Ma T, Rong H, Osibo BK, Mamelona L, Nti IK, Amoah L. Effects of wind speed and wind direction on crop yield forecasting using dynamic time warping and an ensembled learning model. PeerJ 2024; 12:e16538. [PMID: 38881862 PMCID: PMC11177857 DOI: 10.7717/peerj.16538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 04/29/2024] [Indexed: 06/18/2024] Open
Abstract
The cultivation of cashew crops carries numerous economic advantages, and countries worldwide that produce this crop face a high demand. The effects of wind speed and wind direction on crop yield prediction using proficient deep learning algorithms are less emphasized or researched. We propose a combination of advanced deep learning techniques, specifically focusing on long short-term memory (LSTM) and random forest models. We intend to enhance this ensemble model using dynamic time warping (DTW) to assess the spatiotemporal data (wind speed and wind direction) similarities within Jaman North, Jaman South, and Wenchi with their respective production yield. In the Bono region of Ghana, these three areas are crucial for cashew production. The LSTM-DTW-RF model with wind speed and wind direction achieved an R2 score of 0.847 and the LSTM-RF model without these two key features R2 score of (0.74). Both models were evaluated using the augmented Dickey-Fuller (ADF) test, which is commonly used in time series analysis to assess stationarity, where the LSTM-DTW-RF achieved a 90% level of confidence, while LSTM-RF attained an 87.99% level. Among the three municipalities, Jaman South had the highest evaluation scores for the model, with an RMSE of 0.883, an R2 of 0.835, and an MBE of 0.212 when comparing actual and predicted values for Wenchi. In terms of the annual average wind direction, Jaman North recorded (270.5 SW°), Jaman South recorded (274.8 SW°), and Wenchi recorded (272.6 SW°). The DTW similarity distance for the annual average wind speed across these regions fell within specific ranges: Jaman North (±25.72), Jaman South (±25.89), and Wenchi (±26.04). Following the DTW similarity evaluation, Jaman North demonstrated superior performance in wind speed, while Wenchi excelled in wind direction. This underscores the potential efficiency of DTW when incorporated into the analysis of environmental factors affecting crop yields, given its invariant nature. The results obtained can guide further exploration of DTW variations in combination with other machine learning models to predict higher cashew yields. Additionally, these findings emphasize the significance of wind speed and direction in vertical farming, contributing to informed decisions for sustainable agricultural growth and development.
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Affiliation(s)
- Bright Bediako-Kyeremeh
- School of Electronic and Information Engineering, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - TingHuai Ma
- School of Software, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
- School of Computer Engineering, Jiangsu Ocean University, Lianyungang, Jiangsu, China
| | - Huan Rong
- School of Artificial Intelligence, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Benjamin Kwapong Osibo
- School of Software, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Lorenzo Mamelona
- School of Electronic and Information Engineering, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Isaac Kofi Nti
- Department of Information Technology, University of Cincinnati, Cincinnati, Ohio, USA
| | - Lord Amoah
- School of Software, Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
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Redhu M, Singh V, Kumari A, Munjal R, Yashveer S, Nimbal S, Niwas R, Verma S, Sharma K, Loyal A, Chawla R, Pati R, Singh C, Rahimi M. Unlocking genetic insights: Evaluating wheat RILs for physiobiochemical traits under terminal heat stress conditions. BMC PLANT BIOLOGY 2024; 24:429. [PMID: 38773364 PMCID: PMC11106881 DOI: 10.1186/s12870-024-05062-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 04/24/2024] [Indexed: 05/23/2024]
Abstract
BACKGROUND The increasing impacts of heat stress on wheat production due to climate change has entailed the development of heat-resilient crop varieties. To address this, two hundred recombinant inbred lines (RILs) derived from a cross between WH711/WH1021 were evaluated in a randomized block design (RBD) with two replications at CCSHAU, Hisar, during 2018-19 under heat stress and non-stress conditions. Heat stress was induced by altering the date of sowing so that the grain filling stage coincide with heat stress. RESULTS Heat stress adversely affects RILs performance, as illustrated by alterations in phenotypic traits. Highest coefficients of variations were recorded for TAA, CTD 1, WUE, CTD 2, Cc and A under non-stress and heat stress conditions whereas gs, WUEi and GY under non-stress and SPAD 1, SPAD 2, GY and NDVI 2 under heat-stress conditions recorded moderate estimates of coefficient of variations. CTD 2, TAA, E, WUE and A displayed a significant occurrence of both high heritability and substantial genetic advance under non-stress. Similarly, CTD 2, NDVI 2, A, WUEi, SPAD 2, gs, E, Ci, MDA and WUE exhibited high heritability with high genetic advance under heat-stress conditions. CONCLUSIONS Complementary and duplicate types of interactions with number of controlling genes were observed for different parameters depending on the traits and environments. RILs 41, 42, 59, 74, 75, 180 and 194 were categorized as heat tolerant RILs. Selection preferably for NDVI 1, RWC, TAA, A, E and WUEi to accumulate heat tolerance favorable alleles in the selected RILs is suggested for development of heat resilient genotypes for sustainable crop improvement. The results showed that traits such as such as NDVI, RWC, TAA, A, E, and WUEi, can be effective for developing heat-resilient wheat genotypes and ensuring sustainable crop improvement.
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Affiliation(s)
- Mandeep Redhu
- Department of Plant, Soil and Agricultural Systems, College of Agricultural, Life and Physical Sciences, Southern Illinois University, Carbondale, IL, 62901, USA
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Vikram Singh
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India.
| | - Anita Kumari
- College of Botany & Plant Physiology, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Renu Munjal
- College of Botany & Plant Physiology, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Shikha Yashveer
- Department of Molecular Biology, Biotechnology and Bioinformatics, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Somveer Nimbal
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Ram Niwas
- Department of Mathematics, College of Basic Science and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Swati Verma
- Department of Molecular Biology, Biotechnology and Bioinformatics, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Kritika Sharma
- Department of Molecular Biology, Biotechnology and Bioinformatics, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Atul Loyal
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Rukoo Chawla
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Rutuparna Pati
- Department of Genetics and Plant Breeding, College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Chetan Singh
- College of Agriculture, CCS Haryana Agricultural University, Hisar, 125004, India
| | - Mehdi Rahimi
- Department of Biotechnology, Institute of Science and High Technology and Environmental Sciences, Graduate University of Advanced Technology, Kerman, Iran.
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Saini A, Manuja S, Upadhyay RG, Manhas S, Sahoo C, Singh G, Sharma RP, Johnson R, Joel JM, Puthur JT, Imran M, Fayezizadeh MR. Assessing the effect of soil cultivation methods and genotypes on crop yield components, yield and soil properties in wheat (Triticum aestivum L.) and Rice (Oryza sativa L.) cropping system. BMC PLANT BIOLOGY 2024; 24:349. [PMID: 38684981 PMCID: PMC11059587 DOI: 10.1186/s12870-024-05001-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 04/09/2024] [Indexed: 05/02/2024]
Abstract
BACKGROUND The rice-wheat cropping system is the prevailing agricultural method in the North-Western states of India, namely in the Indo-Gangetic plains. The practice of open burning of rice residue is frequently employed for expedient land preparation, but it has significant adverse impacts on both the environment and human health. These include the emission of greenhouse gases, loss of nutrients, elevated concentrations of particulate matter (PM), and disruption of the biological cycle. This research aims to investigate the implementation of effective management strategies in the rice-wheat cropping system, namely via the use of tillage-based crop cultivation techniques, stubble retention, and integration approaches. The objective is to enhance soil health features in order to augment crop yield and improve its attributes. RESULTS The research was carried out using a split plot experimental design, consisting of three replications. The main plot consisted of four different cultivation methods, while the subplot included three genotypes of both rice and wheat. The research demonstrates the enhanced efficacy of residue application is significantly augmenting soil nutrient concentrations compared to standard tillage practices (P < 0.05). This was accomplished by an analysis of soil nutrient levels, namely nitrogen (N), phosphorus (P), potassium (K), and organic carbon (OC), at a depth of 0-15 cm. The implementation of natural farming, zero tillage, and reduced tillage practices resulted in decreases in rice grain yields of 34.0%, 16.1%, and 10.8%, respectively, as compared to conventional tillage methods. Similarly, the implementation of natural farming, zero tillage, and reduced tillage resulted in reductions in wheat grain yields of 59.4%, 10.9%, and 4.6% respectively, in comparison to conventional tillage practices. CONCLUSION Regarding the individual crop genotypes investigated, it was continuously observed that Him Palam Lal Dhan 1 and HPW 368 displayed considerably greater grain yields for both rice and wheat during the two-year experimental period. Furthermore, when considering different cultivation methods, conventional tillage emerged as the most effective approach for obtaining higher productivity in both rice and wheat. Additionally, Him Palam Lal Dhan 1 and HPW 368 exhibited superior performance in terms of various crucial yield components for rice (such as panicle density, grains per panicle, panicle weight, and test weight) and wheat (including effective tiller density, grains per spike, spike weight, and 1000-grain weight).
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Affiliation(s)
- Ankit Saini
- Department of Agronomy, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmaur, HP, 173101, India.
- Department of Agronomy, College of Agriculture, CSKHPKV, Palampur, HP, 176062, India.
| | - Sandeep Manuja
- Department of Agronomy, College of Agriculture, CSKHPKV, Palampur, HP, 176062, India
| | - Ram Gopal Upadhyay
- Department of Organic Agriculture and Natural farming, College of Agriculture CSKHPKV, Palampur, HP, 176062, India
| | - Shilpa Manhas
- Department of Agronomy, Lovely Professional University, Phagwara, Punjab, 144411, India.
| | - Chinmaya Sahoo
- Department of Agronomy, College of Agriculture, Kerala Agricultural University, Vellayani, Thrissur, 680656, India
| | - Gurudev Singh
- Department of Agronomy, College of Agriculture, CSKHPKV, Palampur, HP, 176062, India
| | - Raj Paul Sharma
- Department of Soil Science, College of Agriculture CSKHPKV, Palampur, HP, 176062, India
| | - Riya Johnson
- Plant Physiology and Biochemistry Division, Department of Botany, University of Calicut, C.U. Campus P.O., Kerala, 673635, India
| | - Joy M Joel
- Plant Physiology and Biochemistry Division, Department of Botany, University of Calicut, C.U. Campus P.O., Kerala, 673635, India
| | - Jos T Puthur
- Plant Physiology and Biochemistry Division, Department of Botany, University of Calicut, C.U. Campus P.O., Kerala, 673635, India
| | - Muhammad Imran
- Department of Soil and Environmental Sciences, MNS-University of Agriculture, Multan, 60000, Pakistan
| | - Mohammad Reza Fayezizadeh
- Department of Horticultural Science, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, 61357-43311, Iran.
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Ren X, Li X, Ou X, Wang Z. Environmental effects and their impact on yield in adjacent experimental plots of high-stem and short-stem wheat varieties. BMC PLANT BIOLOGY 2024; 24:282. [PMID: 38622508 PMCID: PMC11020338 DOI: 10.1186/s12870-024-04967-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 03/31/2024] [Indexed: 04/17/2024]
Abstract
BACKGROUND In regional wheat trials, when short-stem wheat varieties and high-stem wheat varieties are planted adjacent to each other in small plots, changes in their marginal plot environment can lead to bias in yield evaluation. Currently, there is no relevant research revealing the degree of their mutual influence. RESULTS In a regional wheat experiment, when high-stem wheat varieties and short-stem wheat varieties were planted adjacent to one another, there was no significant change in soil temperature or humidity in the high-stem wheat variety experimental plot from November to May compared to the control plot, while the soil humidity in the short-stem wheat variety experimental plot was greater than that in the control plot. In May, the soil temperature of the short-stem wheat varieties in the experimental plot was lower than that in the control plot. Illumination of the wheat canopy in the high-stem wheat variety experimental plot had a significant positive effect in April and May, while illumination of the wheat canopy in the short-stem wheat variety experimental plot had a negative effect. The chlorophyll fluorescence parameters of flag leaves in the high-stem wheat variety experimental plots showed an overall increasing trend, while the chlorophyll fluorescence parameters of flag leaves in the experimental plots of short-stem wheat varieties showed a decreasing trend. The analysis of the economic yield, biological yield, and yield factors in each experimental plot revealed that the marginal effects of the economic yield and 1000-grain weight were particularly significant and manifested as positive effects in the high-stem wheat variety experimental plot and as negative effects in the short-stem wheat variety experimental plot. The economic yield of the high-stem wheat variety experimental plot was significantly greater than that of the control plot, the economic yield of the short-stem wheat variety experimental plot was significantly lower than that of the control plot, and the economic yield of the high-stem experimental plot was significantly greater than that of the short-stem experimental plot. When the yield of the control plot of the high-stem wheat varieties was compared to that of the control plot of the short-stem wheat varieties, the yield of the control plot of the short-stem wheat varieties was significantly greater than that of the control plot of the high-stem wheat varieties. CONCLUSIONS Based on these findings, it is concluded that plots with high-stem and short-stem wheat varieties are adjacent in regional wheat trials, the plots of high-stem wheat varieties are subject to marginal positive effects, resulting in a significant increase in economic yield; the plots of short-stem wheat varieties are subject to marginal negative effects, resulting in a decrease in economic yield. This study reveals the mutual influence mechanism of environment and yield with adjacent planting of high-stem and short-stem wheat varieties in regional wheat trials, providing a useful reference and guidance for optimizing the layout of regional wheat trials.
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Affiliation(s)
- Xiujuan Ren
- Henan Institute of Science and Technology, Xinxiang, Henan Province, 453003, PR China
| | - Xinhua Li
- Henan Institute of Science and Technology, Xinxiang, Henan Province, 453003, PR China
| | - Xingqi Ou
- Henan Institute of Science and Technology, Xinxiang, Henan Province, 453003, PR China.
| | - Zijuan Wang
- Xinxiang Nongle Seed Industry Co., Ltd, Xinxiang, Henan Province, 453002, PR China
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Xin J, Khishe M, Zeebaree DQ, Abualigah L, Ghazal TM. Adaptive habitat biogeography-based optimizer for optimizing deep CNN hyperparameters in image classification. Heliyon 2024; 10:e28147. [PMID: 38689992 PMCID: PMC11059399 DOI: 10.1016/j.heliyon.2024.e28147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 03/12/2024] [Accepted: 03/12/2024] [Indexed: 05/02/2024] Open
Abstract
Deep Convolutional Neural Networks (DCNNs) have shown remarkable success in image classification tasks, but optimizing their hyperparameters can be challenging due to their complex structure. This paper develops the Adaptive Habitat Biogeography-Based Optimizer (AHBBO) for tuning the hyperparameters of DCNNs in image classification tasks. In complicated optimization problems, the BBO suffers from premature convergence and insufficient exploration. In this regard, an adaptable habitat is presented as a solution to these problems; it would permit variable habitat sizes and regulated mutation. Better optimization performance and a greater chance of finding high-quality solutions across a wide range of problem domains are the results of this modification's increased exploration and population diversity. AHBBO is tested on 53 benchmark optimization functions and demonstrates its effectiveness in improving initial stochastic solutions and converging faster to the optimum. Furthermore, DCNN-AHBBO is compared to 23 well-known image classifiers on nine challenging image classification problems and shows superior performance in reducing the error rate by up to 5.14%. Our proposed algorithm outperforms 13 benchmark classifiers in 87 out of 95 evaluations, providing a high-performance and reliable solution for optimizing DNNs in image classification tasks. This research contributes to the field of deep learning by proposing a new optimization algorithm that can improve the efficiency of deep neural networks in image classification.
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Affiliation(s)
- Jiayun Xin
- School of Mechanical, Electrical and Information Engineering, Shandong University, Weihai, 264209, Shandong, China
| | - Mohammad Khishe
- Department of Electrical Engineering, Imam Khomeini Marine Science University, Nowshahr, Iran
- Center for Artificial Intelligence Applications, Yuan Ze University, Taiwan
| | - Diyar Qader Zeebaree
- Information Technology Department, Technical College of Duhok, Duhok Polytechnic University, Duhok, Iraq
| | - Laith Abualigah
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman, 19328, Jordan
- Computer Science Department, Al al-Bayt University, Mafraq, 25113, Jordan
- Artificial Intelligence and Sensing Technologies (AIST) Research Center, University of Tabuk, Tabuk, 71491, Saudi Arabia
- MEU Research Unit, Middle East University, Amman, 11831, Jordan
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos, 13-5053, Lebanon
- School of Engineering and Technology, Sunway University Malaysia, Petaling Jaya, 27500, Malaysia
| | - Taher M. Ghazal
- Centre for Cyber Physical Systems, Computer Science Department, Khalifa University, United Arab Emirates
- Center for Cyber Security, Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor, Malaysia
- Applied Science Research Center, Applied Science Private University, Amman, 11937, Jordan
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10
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Lu J, Fu H, Tang X, Liu Z, Huang J, Zou W, Chen H, Sun Y, Ning X, Li J. GOA-optimized deep learning for soybean yield estimation using multi-source remote sensing data. Sci Rep 2024; 14:7097. [PMID: 38528045 DOI: 10.1038/s41598-024-57278-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/15/2024] [Indexed: 03/27/2024] Open
Abstract
Accurately estimating large-area crop yields, especially for soybeans, is essential for addressing global food security challenges. This study introduces a deep learning framework that focuses on precise county-level soybean yield estimation in the United States. It utilizes a wide range of multi-variable remote sensing data. The model used in this study is a state-of-the-art CNN-BiGRU model, which is enhanced by the GOA and a novel attention mechanism (GCBA). This model excels in handling intricate time series and diverse remote sensing datasets. Compared to five leading machine learning and deep learning models, our GCBA model demonstrates superior performance, particularly in the 2019 and 2020 evaluations, achieving remarkable R2, RMSE, MAE and MAPE values. This sets a new benchmark in yield estimation accuracy. Importantly, the study highlights the significance of integrating multi-source remote sensing data. It reveals that synthesizing information from various sensors and incorporating photosynthesis-related parameters significantly enhances yield estimation precision. These advancements not only provide transformative insights for precision agricultural management but also establish a solid scientific foundation for informed decision-making in global agricultural production and food security.
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Affiliation(s)
- Jian Lu
- Institute of Smart Agriculture, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Hongkun Fu
- College of Agriculture, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Xuhui Tang
- College of Information Technology, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Zhao Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, People's Republic of China
| | - Jujian Huang
- College of Surveying and Exploration, Jilin Jianzhu University, Changchun, 130119, People's Republic of China
| | - Wenlong Zou
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, People's Republic of China
| | - Hui Chen
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, People's Republic of China
| | - Yue Sun
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, People's Republic of China
| | - Xiangyu Ning
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102, People's Republic of China
| | - Jian Li
- Institute of Smart Agriculture, Jilin Agricultural University, Changchun, 130118, People's Republic of China.
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11
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Zahid A, Ul Din K, Ahmad M, Hayat U, Zulfiqar U, Askri SMH, Anjum MZ, Maqsood MF, Aijaz N, Chaudhary T, Ali HM. Exogenous application of sulfur-rich thiourea (STU) to alleviate the adverse effects of cobalt stress in wheat. BMC PLANT BIOLOGY 2024; 24:126. [PMID: 38383286 PMCID: PMC10880287 DOI: 10.1186/s12870-024-04795-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 02/04/2024] [Indexed: 02/23/2024]
Abstract
Heavy metal stress affects crop growth and yields as wheat (Triticum aestivum L.) growth and development are negatively affected under heavy metal stress. The study examined the effect of cobalt chloride (CoCl2) stress on wheat growth and development. To alleviate this problem, a pot experiment was done to analyze the role of sulfur-rich thiourea (STU) in accelerating the defense system of wheat plants against cobalt toxicity. The experimental treatments were, i) Heavy metal stress (a) control and (b) Cobalt stress (300 µM), ii) STU foliar applications; (a) control and (b) 500 µM single dose was applied after seven days of stress, and iii) Wheat varieties (a) FSD-2008 and (b) Zincol-2016. The results revealed that cobalt stress decreased chlorophyll a by 10%, chlorophyll b by 16%, and carotenoids by 5% while foliar application of STU increased these photosynthetic pigments by 16%, 15%, and 15% respectively under stress conditions as in contrast to control. In addition, cobalt stress enhances hydrogen peroxide production by 11% and malondialdehyde (MDA) by 10%. In comparison, STU applications at 500 µM reduced the production of these reactive oxygen species by 5% and by 20% by up-regulating the activities of antioxidants. Results have revealed that the activities of SOD improved by 29%, POD by 25%, and CAT by 28% under Cobalt stress. Furthermore, the foliar application of STU significantly increased the accumulation of osmoprotectants as TSS was increased by 23% and proline was increased by 24% under cobalt stress. Among wheat varieties, FSD-2008 showed better adaptation under Cobalt stress by showing enhanced photosynthetic pigments and antioxidant activities compared to Zincol-2016. In conclusion, the foliar-applied STU can alleviate the negative impacts of Cobalt stress by improving plant physiological attributes and upregulating the antioxidant defense system in wheat.
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Affiliation(s)
- Aiman Zahid
- Department of Botany, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Kaleem Ul Din
- Department of Botany, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhamad Ahmad
- Department of Agronomy, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Umer Hayat
- Department of Botany, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Usman Zulfiqar
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan.
| | - Syed Muhammad Hassan Askri
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Muhammad Zohaib Anjum
- Department of Forestry and Range Management, University of Agriculture, Faisalabad, 38040, Pakistan
| | | | - Nazish Aijaz
- School of Biomedical Science, Hunan University, Changsha, Hunan, China
- MOA Key Laboratory of Soil Microbiology, Rhizobium Research Center, China Agricultural University, Beijing, China
| | - Talha Chaudhary
- Faculty of Agricultural and Environmental Sciences, Hungarian University of Agriculture and Life Sciences 2100, Godollo, Hungary.
| | - Hayssam M Ali
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
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12
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Yang X, Hua Z, Li L, Huo X, Zhao Z. Multi-source information fusion-driven corn yield prediction using the Random Forest from the perspective of Agricultural and Forestry Economic Management. Sci Rep 2024; 14:4052. [PMID: 38374339 DOI: 10.1038/s41598-024-54354-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 02/12/2024] [Indexed: 02/21/2024] Open
Abstract
The objective of this study is to promptly and accurately allocate resources, scientifically guide grain distribution, and enhance the precision of crop yield prediction (CYP), particularly for corn, along with ensuring application stability. The digital camera is selected to capture the digital image of a 60 m × 10 m experimental cornfield. Subsequently, the obtained data on corn yield and statistical growth serve as inputs for the multi-source information fusion (MSIF). The study proposes an MSIF-based CYP Random Forest model by amalgamating the fluctuating corn yield dataset. In relation to the spatial variability of the experimental cornfield, the fitting degree and prediction ability of the proposed MSIF-based CYP Random Forest are analyzed, with statistics collected from 1-hectare, 10-hectare, 20-hectare, 30-hectare, and 50-hectare experimental cornfields. Results indicate that the proposed MSIF-based CYP Random Forest model outperforms control models such as support vector machine (SVM) and Long Short-Term Memory (LSTM), achieving the highest prediction accuracy of 89.30%, surpassing SVM and LSTM by approximately 13.44%. Meanwhile, as the experimental field size increases, the proposed model demonstrates higher prediction accuracy, reaching a maximum of 98.71%. This study is anticipated to offer early warnings of potential factors affecting crop yields and to further advocate for the adoption of MSIF-based CYP. These findings hold significant research implications for personnel involved in Agricultural and Forestry Economic Management within the context of developing agricultural economy.
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Affiliation(s)
- Xuziqi Yang
- College of Economics and Management, Northwest A&F University, Yangling, 712100, Shaanxi, China.
| | - Zekai Hua
- College of Economics and Management, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Liang Li
- Laboratory of Walnut Research Center, College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xingheng Huo
- Laboratory of Walnut Research Center, College of Forestry, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Ziqiang Zhao
- College of Humanities and Social Development, Northwest A&F University, Yangling, 712100, Shaanxi, China
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13
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Zhou F, Jiao Y, Han A, Zhou X, Kong J, Hu H, Liu R, Li C. Survey of prothioconazole sensitivity in Fusarium pseudograminearum isolates from Henan Province, China, and characterization of resistant laboratory mutants. BMC PLANT BIOLOGY 2024; 24:29. [PMID: 38172651 PMCID: PMC10765739 DOI: 10.1186/s12870-023-04714-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 12/28/2023] [Indexed: 01/05/2024]
Abstract
BACKGROUND Fusarium crown rot (FCR) is one of the most significant diseases limiting crop production in the Huanghuai wheat-growing region of China. Prothioconazole, a triazole sterol 14α-demethylation inhibitor (DMI) fungicide developed by the Bayer Crop Protection Company, is mainly registered for the prevention and control of wheat powdery mildew and stripe rust (China Pesticide Information Network). It is known to exhibit high activity against F. pseudograminearum, but further research, particularly regarding the potential for fungicide resistance, is required before it can be registered for the control of FCR in China. RESULTS The current study found that the baseline sensitivity of 67 field isolates of F. pseudograminearum collected between 2019 and 2021 ranged between 0.016-2.974 μg/mL, with an average EC50 value of 1.191 ± 0.720 μg/mL (mean ± SD). Although none of the field isolates exhibited signs of resistance, three highly resistant mutants were produced by repeated exposure to prothioconazole under laboratory conditions. All of the mutants were found to exhibit significantly reduced growth rates on potato dextrose agar (PDA), as well as reduced levels of sporulation, which indicated that there was a fitness cost associated with the resistance. However, inoculation of wounded wheat coleoptiles revealed that the pathogenicity of the resistant mutants was little affected or actually increased. Molecular analysis of the genes corresponding to the prothioconazole target protein, FpCYP51 (FpCYP51A, FpCYP51B, and FpCYP51C), indicated that the resistant mutants contained three conserved substitutions (M63I, A205S, and I246V) that were present in the FpCYP51C sequence of all three mutants, as well as several non-conserved substations in their FpCYP51A and FpCYP51B sequences. Expression analysis revealed that the presence of prothioconazole (0.1 μg/mL) generally resulted in reduced expression of the three FpCYP51 genes, but that the three mutants exhibited more complex patterns of expression that differed in comparison to their parental isolates. The study found no evidence of cross-resistance between prothioconazole and any of the fungicides tested including three DMI fungicides tebuconazole, prochloraz, and flutriafol. CONCLUSIONS Taken together these results not only provide new insight into the resistant mechanism and biological characteristics associated with prothioconazole resistance in F. pseudograminearum, but also strong evidence that prothioconazole could provide effective and sustained control of FCR, especially when applied in combination with other fungicides.
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Affiliation(s)
- Feng Zhou
- Postdoctoral Research Base, Henan Institute of Science and Technology, Xinxiang, 453003, China
- Henan Engineering Research Center of Crop Genome Editing , Henan International Joint Laboratory of Plant Genetic Improvement and Soil Remediation, Henan Institute of Science and Technology, Xinxiang, 453003, China
- School of Food Science and Engineering, Henan University of Technology, Zhengzhou, 450001, China
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Yan Jiao
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Aohui Han
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Xiaoli Zhou
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Jiamei Kong
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Haiyan Hu
- Henan Engineering Research Center of Crop Genome Editing , Henan International Joint Laboratory of Plant Genetic Improvement and Soil Remediation, Henan Institute of Science and Technology, Xinxiang, 453003, China
| | - Runqiang Liu
- Postdoctoral Research Base, Henan Institute of Science and Technology, Xinxiang, 453003, China.
- Henan Engineering Research Center of Green Pesticide Creation and Pesticide Residue Monitoring By Intelligent Sensor, Henan Institute of Science and Technology, Xinxiang, 453003, China.
| | - Chengwei Li
- Henan Engineering Research Center of Crop Genome Editing , Henan International Joint Laboratory of Plant Genetic Improvement and Soil Remediation, Henan Institute of Science and Technology, Xinxiang, 453003, China.
- School of Food Science and Engineering, Henan University of Technology, Zhengzhou, 450001, China.
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14
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Chang Y, Latham J, Licht M, Wang L. A data-driven crop model for maize yield prediction. Commun Biol 2023; 6:439. [PMID: 37085696 PMCID: PMC10121691 DOI: 10.1038/s42003-023-04833-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 04/10/2023] [Indexed: 04/23/2023] Open
Abstract
Accurate estimation of crop yield predictions is of great importance for food security under the impact of climate change. We propose a data-driven crop model that combines the knowledge advantage of process-based modeling and the computational advantage of data-driven modeling. The proposed model tracks the daily biomass accumulation process during the maize growing season and uses daily produced biomass to estimate the final grain yield. Computational studies using crop yield, field location, genotype and corresponding environmental data were conducted in the US Corn Belt region from 1981 to 2020. The results suggest that the proposed model can achieve an accurate prediction performance with a 7.16% relative root-mean-square-error of average yield in 2020 and provide scientifically explainable results. The model also demonstrates its ability to detect and separate interactions between genotypic parameters and environmental variables. Additionally, this study demonstrates the potential value of the proposed model in helping farmers achieve higher yields by optimizing seed selection.
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Affiliation(s)
- Yanbin Chang
- Department of Industrial and Manufacturing Systems Engineering, Iowa State University, 2529 Union Drive, Ames, 50011, IA, USA
| | - Jeremy Latham
- Department of Industrial and Manufacturing Systems Engineering, Iowa State University, 2529 Union Drive, Ames, 50011, IA, USA
| | - Mark Licht
- Department of Agronomy, Iowa State University, 716 Farm House Lane, Ames, 50011, IA, USA
| | - Lizhi Wang
- Department of Industrial and Manufacturing Systems Engineering, Iowa State University, 2529 Union Drive, Ames, 50011, IA, USA.
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15
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Cheng E, Zhang B, Peng D, Zhong L, Yu L, Liu Y, Xiao C, Li C, Li X, Chen Y, Ye H, Wang H, Yu R, Hu J, Yang S. Wheat yield estimation using remote sensing data based on machine learning approaches. FRONTIERS IN PLANT SCIENCE 2022; 13:1090970. [PMID: 36618627 PMCID: PMC9816798 DOI: 10.3389/fpls.2022.1090970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Accurate predictions of wheat yields are essential to farmers'production plans and to the international trade in wheat. However, only poor approximations of the productivity of wheat crops in China can be obtained using traditional linear regression models based on vegetation indices and observations of the yield. In this study, Sentinel-2 (multispectral data) and ZY-1 02D (hyperspectral data) were used together with 15709 gridded yield data (with a resolution of 5 m × 5 m) to predict the winter wheat yield. These estimates were based on four mainstream data-driven approaches: Long Short-Term Memory (LSTM), Random Forest (RF), Gradient Boosting Decision Tree (GBDT), and Support Vector Regression (SVR). The method that gave the best estimate of the winter wheat yield was determined, and the accuracy of the estimates based on multispectral and hyperspectral data were compared. The results showed that the LSTM model, for which the RMSE of the estimates was 0.201 t/ha, performed better than the RF (RMSE = 0.260 t/ha), GBDT (RMSE = 0.306 t/ha), and SVR (RMSE = 0.489 t/ha) methods. The estimates based on the ZY-1 02D hyperspectral data were more accurate than those based on the 30-m Sentinel-2 data: RMSE = 0.237 t/ha for the ZY-1 02D data, which is about a 5% improvement on the RSME of 0.307 t/ha for the 30-m Sentinel-2 data. However, the 10-m Sentinel-2 data performed even better, giving an RMSE of 0.219 t/ha. In addition, it was found that the greenness vegetation index SR (simple ratio index) outperformed the traditional vegetation indices. The results highlight the potential of the shortwave infrared bands to replace the visible and near-infrared bands for predicting crop yields Our study demonstrates the advantages of the deep learning method LSTM over machine learning methods in terms of its ability to make accurate estimates of the winter wheat yield.
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Affiliation(s)
- Enhui Cheng
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- College of Resource and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Bing Zhang
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- College of Resource and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Dailiang Peng
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- International Research Center of Big Data for Sustainable Development Goals, Beijing, China
| | | | - Le Yu
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Institute for Global Change Studies, Tsinghua University, Beijing, China
| | - Yao Liu
- Land Satellite Remote Sensing Application Center, Ministry of Natural Resources of China, Beijing, China
| | - Chenchao Xiao
- Land Satellite Remote Sensing Application Center, Ministry of Natural Resources of China, Beijing, China
| | - Cunjun Li
- Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Xiaoyi Li
- Aerospace ShuWei High Tech. Co., Ltd., Beijing, China
| | - Yue Chen
- Aerospace ShuWei High Tech. Co., Ltd., Beijing, China
| | - Huichun Ye
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- International Research Center of Big Data for Sustainable Development Goals, Beijing, China
| | - Hongye Wang
- Cultivated Land Quality Monitoring and Protection center, Ministry of Agriculture and Rural Affairs, Beijing, China
| | - Ruyi Yu
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
| | - Jinkang Hu
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- College of Resource and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Songlin Yang
- 1Key Laboratory of Digital Earth Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing, China
- College of Resource and Environment, University of Chinese Academy of Sciences, Beijing, China
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16
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Zaji A, Liu Z, Xiao G, Sangha JS, Ruan Y. A survey on deep learning applications in wheat phenotyping. Appl Soft Comput 2022. [DOI: 10.1016/j.asoc.2022.109761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Bayesian Posterior-Based Winter Wheat Yield Estimation at the Field Scale through Assimilation of Sentinel-2 Data into WOFOST Model. REMOTE SENSING 2022. [DOI: 10.3390/rs14153727] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Accurate and timely regional crop yield information, particularly field-level yield estimation, is essential for commodity traders and producers in planning production, growing, harvesting, and other interconnected marketing activities. In this study, we propose a novel data assimilation framework. Firstly, we construct the likelihood constraints for a process-based crop growth model based on the previous year’s statistical yield and the current year’s field observations. Then, we infer the posterior sets of model-simulated time-series LAI and the final yield of winter wheat with a Markov chain Monte Carlo (MCMC) method for each meteorological data grid of the European Centre for Medium-Range Weather Forecasts Reanalysis (v5ERA5). Finally, we estimate the winter wheat yield at the spatial resolution of 10 m by combining Sentinel-2 LAI and the WOFOST model in Hengshui, the prefecture-level city of Hebei province of China. The results show that the proposed framework can estimate the winter wheat yield with a coefficient of determination R2 equal to 0.29 and mean absolute percentage error MAPE equal to 7.20% compared to within-field measurements. However, the agricultural stress that crop growth models cannot quantitatively simulate, such as lodging, can greatly reduce the accuracy of yield estimates.
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18
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Rice Mapping in a Subtropical Hilly Region Based on Sentinel-1 Time Series Feature Analysis and the Dual Branch BiLSTM Model. REMOTE SENSING 2022. [DOI: 10.3390/rs14133213] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Timely and accurate information on rice cultivation makes important contributions to the profound reform of the global food and agricultural system, and promotes the development of global sustainable agriculture. With all-day and all-weather observing ability, synthetic aperture radar (SAR) can monitor the distribution of rice in tropical and subtropical areas. To solve the problem of misclassification of rice with no marked signal during the flooding period in subtropical hilly areas, this paper proposes a new feature combination and dual branch bi-directional long short-term memory (DB-BiLSTM) model to achieve high-precision rice mapping using Sentinel-1 time series data. Based on field investigation data, the backscatter time series curves of the rice area were analyzed, and a characteristic index (VV − VH)/(VV + VH) (VV: vertical emission and vertical receipt of polarization, VH: vertical emission and horizontal receipt of polarization) for small areas of hilly land was proposed to effectively distinguish rice and non-rice crops with no marked flooding period. The DB-BiLSTM model was designed, ensuring the independent learning of multiple features and effectively combining the time series information of both (VV − VH)/(VV + VH) and VH features. The city of Shanwei, Guangdong Province, China, was selected as the study area. Experimental results showed that the overall accuracy of the rice mapping results was 97.29%, and the kappa coefficient reached 0.9424. Compared to other methods, the rice mapping results obtained by the proposed method maintained good integrity and had less misclassification, which demonstrated the proposed method’s practical value in accurate and effective rice mapping tasks.
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Grassland Aboveground Biomass Estimation through Assimilating Remote Sensing Data into a Grass Simulation Model. REMOTE SENSING 2022. [DOI: 10.3390/rs14133194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Grassland aboveground biomass is crucial for evaluating grassland desertification, degradation, and grassland and livestock balance. Given the lack of understanding of mechanical processes and limited simulation accuracy for grassland aboveground biomass estimation, especially at the regional scale, this study investigates a new method combining remote sensing data assimilation technology and a grassland process-based model to estimate regional grassland biomass, focusing on improving the simulation accuracy by modeling and revealing the mechanism interpretability of grassland growth processes. Xilinhot City of Inner Mongolia was used as the study area. The ModVege model was selected as the grass dynamic simulation model. A likelihood function was constructed composed of the LAI, grassland aboveground biomass, and daily measurements wherein the accumulated temperature reached ST2 (the temperature sum defining the end of reproductive growth). Then, the Markov chain Monte Carlo (MCMC) methodology was adapted to calibrate the ModVege model by maximizing the likelihood function. The time-series LAI from MOD15A3H was assimilated into the ModVege model, and the model parameters ST2 and BMGV0 (initial biomass and green vegetative tissues, respectively) were optimized at a 500 m pixel scale based on the four-dimensional variational method (4DVar) method. Compared with August 15th, the RMSE and MAPE of aboveground biomass were 242 kg/ha and 10%, respectively, after calibration. Data assimilation improved this accuracy, with the RMSE decreasing to 214 kg/ha. Overall, the aboveground grassland biomass of Xilinhot City shows spatial distribution patterns of high value in the northeast and low value in the central and southeast areas. Generally, the method implemented in this study provides an important reference for the aboveground biomass estimation of regional grassland.
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Gu C, Ji S, Xi X, Zhang Z, Hong Q, Huo Z, Li W, Mao W, Zhao H, Zhang R, Li B, Tan C. Rice Yield Estimation Based on Continuous Wavelet Transform With Multiple Growth Periods. FRONTIERS IN PLANT SCIENCE 2022; 13:931789. [PMID: 35845632 PMCID: PMC9285008 DOI: 10.3389/fpls.2022.931789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
Yield is an important indicator in evaluating rice planting, and it is the collective result of various factors over multiple growth stages. To achieve a large-scale accurate prediction of rice yield, based on yield estimation models using a single growth stage and conventional spectral transformation methods, this study introduced the continuous wavelet transform algorithm and constructed models under the premise of combined multiple growth stages. In this study, canopy reflectance spectra at four important stages of rice elongation, heading, flowering and milky were selected, and then, a rice yield estimation model was constructed by combining vegetation index, first derivative and wavelet transform based on random forest algorithm or multiple stepwise regression. This study found that the combination of multiple growth stages significantly improved the model accuracy. In addition, after two validations, the optimal model combination for rice yield estimation is first derivative-wavelet transform-vegetation index-random forest model based on four growth stages, with the coefficient of determination (R2) of 0.86, the root mean square error (RMSE) of 35.50 g·m-2 and the mean absolute percentage error (MAPE) of 4.6% for the training set, R2 of 0.85, RMSE of 33.40 g.m-2 and MAPE 4.30% for the validation set 1, and R2 of 0.80, RMSE of 37.40 g·m-2 and MAPE of 4.60% for the validation set 2. The research results demonstrated that the established model could accurately predict rice yield, providing technical support and a foundation for large-scale statistical estimating of rice yield.
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Affiliation(s)
- Chen Gu
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Shu Ji
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Xiaobo Xi
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Zhenghua Zhang
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Qingqing Hong
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Zhongyang Huo
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Wenxi Li
- Station of Land Protection of Yangzhou City, Yangzhou, China
| | - Wei Mao
- Station of Land Protection of Yangzhou City, Yangzhou, China
| | - Haitao Zhao
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Ruihong Zhang
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Bin Li
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
| | - Changwei Tan
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Key Laboratory of Cultivated Land Quality Monitoring and Evaluation (Jiangsu) Ministry of Agriculture and Rural Affairs, Jiangsu Engineering Centre for Modern Agricultural Machinery and Agronomy Technology, Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou University, Yangzhou, China
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Cui Y, Liu S, Li X, Geng H, Xie Y, He Y. Estimating Maize Yield in the Black Soil Region of Northeast China Using Land Surface Data Assimilation: Integrating a Crop Model and Remote Sensing. FRONTIERS IN PLANT SCIENCE 2022; 13:915109. [PMID: 35812922 PMCID: PMC9261464 DOI: 10.3389/fpls.2022.915109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Accurate yield estimation at the regional scale has always been a persistent challenge in the agricultural sector. With the vigorous emergence of remote sensing land surface observations in recent decades, data assimilation methodology has become an effective means to promote the accuracy and efficiency of yield estimation by integrating regional data and point-scale crop models. This paper focuses on the black soil area of Northeast China, a national strategic grain production base, applying the AquaCrop crop growth model to simulate the fractional vegetation cover (FVC) and maize yield from 2000 to 2020 and then forming a reliable FVC optimization dataset based on an ensemble Kalman filter (EnKF) assimilation algorithm with remote sensing products. Using the random forest model, the regression relationship between FVC and yield was established from the long-term time series data, which is crucial to achieve better yield estimation through the optimized FVC. The major findings include the following: (1) The R2 of the assimilated FVC and maize yield can reach 0.557. (2) When compared with the local statistical yield, our method reduced the mean absolute error (MAE) from 1.164 ton/ha (based on GLASS FVC products) to 1.004 ton/ha (based on the calibrated AquaCrop model) and then to 0.888 ton/ha (the result after assimilation). The above results show that we have proposed a yield estimation method to provide accurate yield estimations by combining data assimilation and machine learning. This study provided deep insights into understanding the variations in FVC and revealed the spatially explicit yield prediction ability from the time series land surface parameters, which has significant potential for optimizing water and soil resource management.
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Affiliation(s)
- Ying Cui
- Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Beijing Key Laboratory of Environmental Remote Sensing and Digital Cities, Beijing Normal University, Beijing, China
| | - Suhong Liu
- Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Beijing Key Laboratory of Environmental Remote Sensing and Digital Cities, Beijing Normal University, Beijing, China
| | - Xingang Li
- Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Beijing Key Laboratory of Environmental Remote Sensing and Digital Cities, Beijing Normal University, Beijing, China
| | - Hao Geng
- Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Beijing Key Laboratory of Environmental Remote Sensing and Digital Cities, Beijing Normal University, Beijing, China
| | - Yun Xie
- Faculty of Geographical Science, Beijing Normal University, Beijing, China
- Beijing Key Laboratory of Environmental Remote Sensing and Digital Cities, Beijing Normal University, Beijing, China
| | - Yuhua He
- Land Satellite Remote Sensing Application Center, Ministry of Natural Resources of the People’s Republic of China, Beijing, China
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22
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Machine Learning in the Analysis of Multispectral Reads in Maize Canopies Responding to Increased Temperatures and Water Deficit. REMOTE SENSING 2022. [DOI: 10.3390/rs14112596] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Real-time monitoring of crop responses to environmental deviations represents a new avenue for applications of remote and proximal sensing. Combining the high-throughput devices with novel machine learning (ML) approaches shows promise in the monitoring of agricultural production. The 3 × 2 multispectral arrays with responses at 610 and 680 nm (red), 730 and 760 nm (red-edge) and 810 and 860 nm (infrared) spectra were used to assess the occurrence of leaf rolling (LR) in 545 experimental maize plots measured four times for calibration dataset (n = 2180) and 145 plots measured once for external validation. Multispectral reads were used to calculate 15 simple normalized vegetation indices. Four ML algorithms were assessed: single and multilayer perceptron (SLP and MLP), convolutional neural network (CNN) and support vector machines (SVM) in three validation procedures, which were stratified cross-validation, random subset validation and validation with external dataset. Leaf rolling occurrence caused visible changes in spectral responses and calculated vegetation indexes. All algorithms showed good performance metrics in stratified cross-validation (accuracy >80%). SLP was the least efficient in predictions with external datasets, while MLP, CNN and SVM showed comparable performance. Combining ML with multispectral sensing shows promise in transition towards agriculture based on data-driven decisions especially considering the novel Internet of Things (IoT) avenues.
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A Systematic Literature Review on Crop Yield Prediction with Deep Learning and Remote Sensing. REMOTE SENSING 2022. [DOI: 10.3390/rs14091990] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Deep learning has emerged as a potential tool for crop yield prediction, allowing the model to automatically extract features and learn from the datasets. Meanwhile, smart farming technology enables the farmers to achieve maximum crop yield by extracting essential parameters of crop growth. This systematic literature review highlights the existing research gaps in a particular area of deep learning methodologies and guides us in analyzing the impact of vegetation indices and environmental factors on crop yield. To achieve the aims of this study, prior studies from 2012 to 2022 from various databases are collected and analyzed. The study focuses on the advantages of using deep learning in crop yield prediction, the suitable remote sensing technology based on the data acquisition requirements, and the various features that influence crop yield prediction. This study finds that Long Short-Term Memory (LSTM) and Convolutional Neural Networks (CNN) are the most widely used deep learning approaches for crop yield prediction. The commonly used remote sensing technology is satellite remote sensing technology—in particular, the use of the Moderate-Resolution Imaging Spectroradiometer (MODIS). Findings show that vegetation indices are the most used feature for crop yield prediction. However, it is also observed that the most used features in the literature do not always work for all the approaches. The main challenges of using deep learning approaches and remote sensing for crop yield prediction are how to improve the working model for better accuracy, the practical implication of the model for providing accurate information about crop yield to agriculturalists, growers, and policymakers, and the issue with the black box property.
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Spatial-Temporal Neural Network for Rice Field Classification from SAR Images. REMOTE SENSING 2022. [DOI: 10.3390/rs14081929] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Agriculture is an important regional economic industry in Asian regions. Ensuring food security and stabilizing the food supply are a priority. In response to the frequent occurrence of natural disasters caused by global warming in recent years, the Agriculture and Food Agency (AFA) in Taiwan has conducted agricultural and food surveys to address those issues. To improve the accuracy of agricultural and food surveys, AFA uses remote sensing technology to conduct surveys on the planting area of agricultural crops. Unlike optical images that are easily disturbed by rainfall and cloud cover, synthetic aperture radar (SAR) images will not be affected by climatic factors, which makes them more suitable for the forecast of crops production. This research proposes a novel spatial-temporal neural network called a convolutional long short-term memory rice field classifier (ConvLSTM-RFC) for rice field classification from Sentinel-1A SAR images of Yunlin and Chiayi counties in Taiwan. The proposed model ConvLSTM-RFC is implemented with multiple convolutional long short-term memory attentions blocks (ConvLSTM Att Block) and a bi-tempered logistic loss function (BiTLL). Moreover, a convolutional block attention module (CBAM) was added to the residual structure of the ConvLSTM Att Block to focus on rice detection in different periods on SAR images. The experimental results of the proposed model ConvLSTM-RFC have achieved the highest accuracy of 98.08% and the rice false positive is as low as 15.08%. The results indicate that the proposed ConvLSTM-RFC produces the highest area under curve (AUC) value of 88% compared with other related models.
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Improving the Forecasting of Winter Wheat Yields in Northern China with Machine Learning–Dynamical Hybrid Subseasonal-to-Seasonal Ensemble Prediction. REMOTE SENSING 2022. [DOI: 10.3390/rs14071707] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Subseasonal-to-seasonal (S2S) prediction of winter wheat yields is crucial for farmers and decision-makers to reduce yield losses and ensure food security. Recently, numerous researchers have utilized machine learning (ML) methods to predict crop yield, using observational climate variables and satellite data. Meanwhile, some studies also illustrated the potential of state-of-the-art dynamical atmospheric prediction in crop yield forecasting. However, the potential of coupling both methods has not been fully explored. Herein, we aimed to establish a skilled ML–dynamical hybrid model for crop yield forecasting (MHCF v1.0), which hybridizes ML and a global dynamical atmospheric prediction system, and applied it to northern China at the S2S time scale. In this study, we adopted three mainstream machining learning algorithms (XGBoost, RF, and SVR) and the multiple linear regression (MLR) model, and three major datasets, including satellite data from MOD13C1, observational climate data from CRU, and S2S atmospheric prediction data from IAP CAS, used to predict winter wheat yield from 2005 to 2014, at the grid level. We found that, among the four models examined in this work, XGBoost reached the highest skill with the S2S prediction as inputs, scoring R2 of 0.85 and RMSE of 0.78 t/ha 3–4 months, leading the winter wheat harvest. Moreover, the results demonstrated that crop yield forecasting with S2S dynamical predictions generally outperforms that with observational climate data. Our findings highlighted that the coupling of ML and S2S dynamical atmospheric prediction provided a useful tool for yield forecasting, which could guide agricultural practices, policy-making and agricultural insurance.
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Prediction of Field-Scale Wheat Yield Using Machine Learning Method and Multi-Spectral UAV Data. REMOTE SENSING 2022. [DOI: 10.3390/rs14061474] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Accurate prediction of food crop yield is of great significance for global food security and regional trade stability. Since remote sensing data collected from unmanned aerial vehicle (UAV) platforms have the features of flexibility and high resolution, these data can be used as samples to develop regional regression models for accurate prediction of crop yield at a field scale. The primary objective of this study was to construct regional prediction models for winter wheat yield based on multi-spectral UAV data and machine learning methods. Six machine learning methods including Gaussian process regression (GPR), support vector machine regression (SVR) and random forest regression (RFR) were used for the construction of the yield prediction models. Ten vegetation indices (VIs) extracted from canopy spectral images of winter wheat acquired from a multi-spectral UAV at five key growth stages in Xuzhou City, Jiangsu Province, China in 2021 were selected as the variables of the models. In addition, in situ measurements of wheat yield were obtained in a destructive sampling manner for prediction algorithm modeling and validation. Prediction results of single growth stages showed that the optimal model was GPR constructed from extremely strong correlated VIs (ESCVIs) at the filling stage (R2 = 0.87, RMSE = 49.22 g/m2, MAE = 42.74 g/m2). The results of multiple stages showed GPR achieved the highest accuracy (R2 = 0.88, RMSE = 49.18 g/m2, MAE = 42.57 g/m2) when the ESCVIs of the flowering and filling stages were used. Larger sampling plots were adopted to verify the accuracy of yield prediction; the results indicated that the GPR model has strong adaptability at different scales. These findings suggest that using machine learning methods and multi-spectral UAV data can accurately predict crop yield at the field scale and deliver a valuable application reference for farm-scale field crop management.
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Kernel Ridge Regression Hybrid Method for Wheat Yield Prediction with Satellite-Derived Predictors. REMOTE SENSING 2022. [DOI: 10.3390/rs14051136] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Wheat dominates the Australian grain production market and accounts for 10–15% of the world’s 100 million tonnes annual global wheat trade. Accurate wheat yield prediction is critical to satisfying local consumption and increasing exports regionally and globally to meet human food security. This paper incorporates remote satellite-based information in a wheat-growing region in South Australia to estimate the yield by integrating the kernel ridge regression (KRR) method coupled with complete ensemble empirical mode decomposition with adaptive noise (CEEMDAN) and the grey wolf optimisation (GWO). The hybrid model, ‘GWO-CEEMDAN-KRR,’ employing an initial pool of 23 different satellite-based predictors, is seen to outperform all the benchmark models and all the feature selection (ant colony, atom search, and particle swarm optimisation) methods that are implemented using a set of carefully screened satellite variables and a feature decomposition or CEEMDAN approach. A suite of statistical metrics and infographics comparing the predicted and measured yield shows a model prediction error that can be reduced by ~20% by employing the proposed GWO-CEEMDAN-KRR model. With the metrics verifying the accuracy of simulations, we also show that it is possible to optimise the wheat yield to achieve agricultural profits by quantifying and including the effects of satellite variables on potential yield. With further improvements in the proposed methodology, the GWO-CEEMDAN-KRR model can be adopted in agricultural yield simulation that requires remote sensing data to establish the relationships between crop health, yield, and other productivity features to support precision agriculture.
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Cotton Classification Method at the County Scale Based on Multi-Features and Random Forest Feature Selection Algorithm and Classifier. REMOTE SENSING 2022. [DOI: 10.3390/rs14040829] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Accurate cotton maps are crucial for monitoring cotton growth and precision management. The paper proposed a county-scale cotton mapping method by using random forest (RF) feature selection algorithm and classifier based on selecting multi-features, including spectral, vegetation indices, and texture features. The contribution of texture features to cotton classification accuracy was also explored in addition to spectral features and vegetation index. In addition, the optimal classification time, feature importance, and the best classifier on the cotton extraction accuracy were evaluated. The results showed that the texture feature named the gray level co-occurrence matrix (GLCM) is effective for improving classification accuracy, ranking second in contribution among all studied spectral, VI, and texture features. Among the three classifiers, the RF showed higher accuracy and better stability than support vector machines (SVM) and artificial neural networks (ANN). The average overall accuracy (OA) of the classification combining multiple features was 93.36%, 7.33% higher than the average OA of the single-time spectrum, and 2.05% higher than the average OA of the multi-time spectrum. The classification accuracy after feature selection by RF can still reach 92.12%, showing high accuracy and efficiency. Combining multiple features and random forest methods may be a promising county-scale cotton classification method.
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Jeong S, Ko J, Yeom JM. Predicting rice yield at pixel scale through synthetic use of crop and deep learning models with satellite data in South and North Korea. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 802:149726. [PMID: 34464811 DOI: 10.1016/j.scitotenv.2021.149726] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 08/11/2021] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
Abstract
Prediction of rice yields at pixel scale rather than county scale can benefit crop management and scientific understanding because it is useful for monitoring how crop yields respond to various agricultural systems and environmental factors. In this study, we propose a methodology for the early prediction of rice yield at pixel scale combining a crop model and a deep learning model for different agricultural systems throughout South and North Korea. Initially, satellite-integrated crop models were applied to obtain a pixel-scale reference rice yield. Then, the pixel-scale reference rice yields were used as target labels in the deep learning model to leverage the advantages of crop models. Models of five different deep learning network architectures were employed to help determine the hybrid structure of long-short term memory (LSTM) and one-dimensional convolutional neural network (1D-CNN) layers by predicting the optimal model about two months ahead of harvest time. The suggested model showed good performance [R2 = 0.859, Nash-Sutcliffe model efficiency = 0.858, root mean squared error = 0.605 Mg ha-1], with specific spatial patterns of rice yields for South and North Korea. Analysis of the relative importance of the input variables showed the water-related index and maximum temperature in North Korea and the vegetation indices and geographic variables in South Korea to be crucial for predicting rice yields. The proposed approach successfully predicted and diagnosed rice yield at the pixel scale for inaccessible locations where reliable ground measurements are not available, especially North Korea.
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Affiliation(s)
- Seungtaek Jeong
- Satellite Application Division, Korea Aerospace Research Institute, 169-84 Gwahak-ro, Yuseong-gu, Daejeon 34133, Republic of Korea
| | - Jonghan Ko
- Applied Plant Science, Chonnam National University, 77 Yongbong-ro, Buk-gu, Gwangju 61186, Republic of Korea
| | - Jong-Min Yeom
- Satellite Application Division, Korea Aerospace Research Institute, 169-84 Gwahak-ro, Yuseong-gu, Daejeon 34133, Republic of Korea.
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Ferchichi A, Abbes AB, Barra V, Farah IR. Forecasting vegetation indices from spatio-temporal remotely sensed data using deep learning-based approaches: A systematic literature review. ECOL INFORM 2022. [DOI: 10.1016/j.ecoinf.2022.101552] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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31
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Integration of a Crop Growth Model and Deep Learning Methods to Improve Satellite-Based Yield Estimation of Winter Wheat in Henan Province, China. REMOTE SENSING 2021. [DOI: 10.3390/rs13214372] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Timely and accurate regional crop-yield estimates are crucial for guiding agronomic practices and policies to improve food security. In this study, a crop-growth model was integrated with time series of remotely sensed data through deep learning (DL) methods to improve the accuracy of regional wheat-yield estimations in Henan Province, China. Firstly, the time series of moderate-resolution imaging spectroradiometer (MODIS) normalized difference vegetation index (NDVI) were input into the long short-term memory network (LSTM) model to identify the wheat-growing region, which was further used to estimate wheat areas at the municipal and county levels. Then, the leaf area index (LAI) and grain-yield time series simulated by the Crop Environment REsource Synthesis for Wheat (CERES-Wheat) model were used to train and evaluate the LSTM, one-dimensional convolutional neural network (1-D CNN) and random forest (RF) models, respectively. Finally, an exponential model of the relationship between the field-measured LAI and MODIS NDVI was applied to obtain the regional LAI, which was input into the trained LSTM, 1-D CNN and RF models to estimate wheat yields within the wheat-growing region. The results showed that the linear correlations between the estimated wheat areas and the statistical areas were significant at both the municipal and county levels. The LSTM model provided more accurate estimates of wheat yields, with higher R2 values and lower root mean square error (RMSE) and mean relative error (MRE) values than the 1-D CNN and RF models. The LSTM model has an inherent advantage in capturing phenological information contained in the time series of the MODIS-derived LAI, which is important for satellite-based crop-yield estimates.
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Murakami K, Shimoda S, Kominami Y, Nemoto M, Inoue S. Prediction of municipality-level winter wheat yield based on meteorological data using machine learning in Hokkaido, Japan. PLoS One 2021; 16:e0258677. [PMID: 34662365 PMCID: PMC8523044 DOI: 10.1371/journal.pone.0258677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Accepted: 10/03/2021] [Indexed: 11/04/2022] Open
Abstract
This study analyzed meteorological constraints on winter wheat yield in the northern Japanese island, Hokkaido, and developed a machine learning model to predict municipality-level yields from meteorological data. Compared to most wheat producing areas, this island is characterized by wet climate owing to greater annual precipitation and abundant snowmelt water supply in spring. Based on yield statistics collected from 119 municipalities for 14 years (N = 1,516) and high-resolution surface meteorological data, correlation analyses showed that precipitation, daily minimum air temperature, and irradiance during the grain-filling period had significant effects on the yield throughout the island while the effect of snow depth in early winter and spring was dependent on sites. Using 10-d mean meteorological data within a certain period between seeding and harvest as predictor variables and one-year-leave-out cross-validation procedure, performance of machine learning models based on neural network (NN), random forest (RF), support vector machine regression (SVR), partial least squares regression (PLS), and cubist regression (CB) were compared to a multiple linear regression model (MLR) and a null model that returns an average yield of the municipality. The root mean square errors of PLS, SVR, and RF were 872, 982, and 1,024 kg ha−1 and were smaller than those of MLR (1,068 kg ha−1) and null model (1,035 kg ha−1). These models outperformed the controls in other metrics including Pearson’s correlation coefficient and Nash-Sutcliffe efficiency. Variable importance analysis on PLS indicated that minimum air temperature and precipitation during the grain-filling period had major roles in the prediction and excluding predictors in this period (i.e. yield forecast with a longer lead-time) decreased forecast performance of the models. These results were consistent with our understanding of meteorological impacts on wheat yield, suggesting usefulness of explainable machine learning in meteorological crop yield prediction under wet climate.
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Affiliation(s)
- Keach Murakami
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
- * E-mail:
| | - Seiji Shimoda
- National Agriculture and Food Research Organization (NARO), Memuro, Kasai, Hokkaido, Japan
| | - Yasuhiro Kominami
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
| | - Manabu Nemoto
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
| | - Satoshi Inoue
- Hokkaido Agricultural Research Center (HARC), Toyohira, Sapporo, Hokkaido, Japan
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The Role of Earth Observation in Achieving Sustainable Agricultural Production in Arid and Semi-Arid Regions of the World. REMOTE SENSING 2021. [DOI: 10.3390/rs13173382] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Crop production is a major source of food and livelihood for many people in arid and semi-arid (ASA) regions across the world. However, due to irregular climatic events, ASA regions are affected commonly by frequent droughts that can impact food production. In addition, ASA regions in the Middle East and Africa are often characterised by political instability, which can increase population vulnerability to hunger and ill health. Remote sensing (RS) provides a platform to improve the spatial prediction of crop production and food availability, with the potential to positively impact populations. This paper, firstly, describes some of the important characteristics of agriculture in ASA regions that require monitoring to improve their management. Secondly, it demonstrates how freely available RS data can support decision-making through a cost-effective monitoring system that complements traditional approaches for collecting agricultural data. Thirdly, it illustrates the challenges of employing freely available RS data for mapping and monitoring crop area, crop status and forecasting crop yield in these regions. Finally, existing approaches used in these applications are evaluated, and the challenges associated with their use and possible future improvements are discussed. We demonstrate that agricultural activities can be monitored effectively and both crop area and crop yield can be predicted in advance using RS data. We also discuss the future challenges associated with maintaining food security in ASA regions and explore some recent advances in RS that can be used to monitor cropland and forecast crop production and yield.
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Corn Residue Covered Area Mapping with a Deep Learning Method Using Chinese GF-1 B/D High Resolution Remote Sensing Images. REMOTE SENSING 2021. [DOI: 10.3390/rs13152903] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Black soil is one of the most productive soils with high organic matter content. Crop residue covering is important for protecting black soil from alleviating soil erosion and increasing soil organic carbon. Mapping crop residue covered areas accurately using remote sensing images can monitor the protection of black soil in regional areas. Considering the inhomogeneity and randomness, resulting from human management difference, the high spatial resolution Chinese GF-1 B/D image and developed MSCU-net+C deep learning method are used to mapping corn residue covered area (CRCA) in this study. The developed MSCU-net+C is joined by a multiscale convolution group (MSCG), the global loss function, and Convolutional Block Attention Module (CBAM) based on U-net and the full connected conditional random field (FCCRF). The effectiveness of the proposed MSCU-net+C is validated by the ablation experiment and comparison experiment for mapping CRCA in Lishu County, Jilin Province, China. The accuracy assessment results show that the developed MSCU-net+C improve the CRCA classification accuracy from IOUAVG = 0.8604 and KappaAVG = 0.8864 to IOUAVG = 0.9081 and KappaAVG = 0.9258 compared with U-net. Our developed and other deep semantic segmentation networks (MU-net, GU-net, MSCU-net, SegNet, and Dlv3+) improve the classification accuracy of IOUAVG/KappaAVG with 0.0091/0.0058, 0.0133/0.0091, 0.044/0.0345, 0.0104/0.0069, and 0.0107/0.0072 compared with U-net, respectively. The classification accuracies of IOUAVG/KappaAVG of traditional machine learning methods, including support vector machine (SVM) and neural network (NN), are 0.576/0.5526 and 0.6417/0.6482, respectively. These results reveal that the developed MSCU-net+C can be used to map CRCA for monitoring black soil protection.
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Selection of Independent Variables for Crop Yield Prediction Using Artificial Neural Network Models with Remote Sensing Data. LAND 2021. [DOI: 10.3390/land10060609] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Knowing the expected crop yield in the current growing season provides valuable information for farmers, policy makers, and food processing plants. One of the main benefits of using reliable forecasting tools is generating more income from grown crops. Information on the amount of crop yielding before harvesting helps to guide the adoption of an appropriate strategy for managing agricultural products. The difficulty in creating forecasting models is related to the appropriate selection of independent variables. Their proper selection requires a perfect knowledge of the research object. The following article presents and discusses the most commonly used independent variables in agricultural crop yield prediction modeling based on artificial neural networks (ANNs). Particular attention is paid to environmental variables, such as climatic data, air temperature, total precipitation, insolation, and soil parameters. The possibility of using plant productivity indices and vegetation indices, which are valuable predictors obtained due to the application of remote sensing techniques, are analyzed in detail. The paper emphasizes that the increasingly common use of remote sensing and photogrammetric tools enables the development of precision agriculture. In addition, some limitations in the application of certain input variables are specified, as well as further possibilities for the development of non-linear modeling, using artificial neural networks as a tool supporting the practical use of and improvement in precision farming techniques.
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Benos L, Tagarakis AC, Dolias G, Berruto R, Kateris D, Bochtis D. Machine Learning in Agriculture: A Comprehensive Updated Review. SENSORS (BASEL, SWITZERLAND) 2021; 21:3758. [PMID: 34071553 PMCID: PMC8198852 DOI: 10.3390/s21113758] [Citation(s) in RCA: 65] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 05/21/2021] [Accepted: 05/24/2021] [Indexed: 01/05/2023]
Abstract
The digital transformation of agriculture has evolved various aspects of management into artificial intelligent systems for the sake of making value from the ever-increasing data originated from numerous sources. A subset of artificial intelligence, namely machine learning, has a considerable potential to handle numerous challenges in the establishment of knowledge-based farming systems. The present study aims at shedding light on machine learning in agriculture by thoroughly reviewing the recent scholarly literature based on keywords' combinations of "machine learning" along with "crop management", "water management", "soil management", and "livestock management", and in accordance with PRISMA guidelines. Only journal papers were considered eligible that were published within 2018-2020. The results indicated that this topic pertains to different disciplines that favour convergence research at the international level. Furthermore, crop management was observed to be at the centre of attention. A plethora of machine learning algorithms were used, with those belonging to Artificial Neural Networks being more efficient. In addition, maize and wheat as well as cattle and sheep were the most investigated crops and animals, respectively. Finally, a variety of sensors, attached on satellites and unmanned ground and aerial vehicles, have been utilized as a means of getting reliable input data for the data analyses. It is anticipated that this study will constitute a beneficial guide to all stakeholders towards enhancing awareness of the potential advantages of using machine learning in agriculture and contributing to a more systematic research on this topic.
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Affiliation(s)
- Lefteris Benos
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Aristotelis C. Tagarakis
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Georgios Dolias
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Remigio Berruto
- Department of Agriculture, Forestry and Food Science (DISAFA), University of Turin, Largo Braccini 2, 10095 Grugliasco, Italy;
| | - Dimitrios Kateris
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
| | - Dionysis Bochtis
- Centre of Research and Technology-Hellas (CERTH), Institute for Bio-Economy and Agri-Technology (IBO), 6th km Charilaou-Thermi Rd, GR 57001 Thessaloniki, Greece; (L.B.); (A.C.T.); (G.D.); (D.K.)
- FarmB Digital Agriculture P.C., Doiranis 17, GR 54639 Thessaloniki, Greece
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Garlic and Winter Wheat Identification Based on Active and Passive Satellite Imagery and the Google Earth Engine in Northern China. REMOTE SENSING 2020. [DOI: 10.3390/rs12213539] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Garlic and winter wheat are major economic and grain crops in China, and their boundaries have increased substantially in recent decades. Updated and accurate garlic and winter wheat maps are critical for assessing their impacts on society and the environment. Remote sensing imagery can be used to monitor spatial and temporal changes in croplands such as winter wheat and maize. However, to our knowledge, few studies are focusing on garlic area mapping. Here, we proposed a method for coupling active and passive satellite imagery for the identification of both garlic and winter wheat in Northern China. First, we used passive satellite imagery (Sentinel-2 and Landsat-8 images) to extract winter crops (garlic and winter wheat) with high accuracy. Second, we applied active satellite imagery (Sentinel-1 images) to distinguish garlic from winter wheat. Third, we generated a map of the garlic and winter wheat by coupling the above two classification results. For the evaluation of classification, the overall accuracy was 95.97%, with a kappa coefficient of 0.94 by eighteen validation quadrats (3 km by 3 km). The user’s and producer’s accuracies of garlic are 95.83% and 95.85%, respectively; and for the winter wheat, these two accuracies are 97.20% and 97.45%, respectively. This study provides a practical exploration of targeted crop identification in mixed planting areas using multisource remote sensing data.
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Prediction of Winter Wheat Maturity Dates through Assimilating Remotely Sensed Leaf Area Index into Crop Growth Model. REMOTE SENSING 2020. [DOI: 10.3390/rs12182896] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Predicting crop maturity dates is important for improving crop harvest planning and grain quality. The prediction of crop maturity dates by assimilating remote sensing information into crop growth model has not been fully explored. In this study, a data assimilation framework incorporating the leaf area index (LAI) product from Moderate Resolution Imaging Spectroradiometer (MODIS) into a World Food Studies (WOFOST) model was proposed to predict the maturity dates of winter wheat in Henan province, China. Minimization of normalized cost function was used to obtain the input parameters of the WOFOST model. The WOFOST model was run with the re-initialized parameter to forecast the maturity dates of winter wheat grid by grid, and THORPEX Interactive Grand Global Ensemble (TIGGE) was used as forecasting period weather input in the future 15 days (d) for the WOFOST model. The results demonstrated a promising regional maturity date prediction with determination coefficient (R2) of 0.94 and the root mean square error (RMSE) of 1.86 d. The outcomes also showed that the optimal forecasting starting time for Henan was 30 April, corresponding to a stage from anthesis to grain filling. Our study indicated great potential of using data assimilation approaches in winter wheat maturity date prediction.
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