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Gerstenberger BS, Ambler C, Arnold EP, Banker ME, Brown MF, Clark JD, Dermenci A, Dowty ME, Fensome A, Fish S, Hayward MM, Hegen M, Hollingshead BD, Knafels JD, Lin DW, Lin TH, Owen DR, Saiah E, Sharma R, Vajdos FF, Xing L, Yang X, Yang X, Wright SW. Discovery of Tyrosine Kinase 2 (TYK2) Inhibitor (PF-06826647) for the Treatment of Autoimmune Diseases. J Med Chem 2020; 63:13561-13577. [PMID: 32787094 DOI: 10.1021/acs.jmedchem.0c00948] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Tyrosine kinase 2 (TYK2) is a member of the JAK kinase family that regulates signal transduction downstream of receptors for the IL-23/IL-12 pathways and type I interferon family, where it pairs with JAK2 or JAK1, respectively. On the basis of human genetic and emerging clinical data, a selective TYK2 inhibitor provides an opportunity to treat autoimmune diseases delivering a potentially differentiated clinical profile compared to currently approved JAK inhibitors. The discovery of an ATP-competitive pyrazolopyrazinyl series of TYK2 inhibitors was accomplished through computational and structurally enabled design starting from a known kinase hinge binding motif. With understanding of PK/PD relationships, a target profile balancing TYK2 potency and selectivity over off-target JAK2 was established. Lead optimization involved modulating potency, selectivity, and ADME properties which led to the identification of the clinical candidate PF-06826647 (22).
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Affiliation(s)
| | | | - Eric P Arnold
- Pfizer Inc., Groton, Connecticut 06340, United States
| | | | | | - James D Clark
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | | | - Martin E Dowty
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Andrew Fensome
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Susan Fish
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | | | - Martin Hegen
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | | | | | - David W Lin
- Pfizer Inc., Groton, Connecticut 06340, United States
| | - Tsung H Lin
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Dafydd R Owen
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Eddine Saiah
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Raman Sharma
- Pfizer Inc., Groton, Connecticut 06340, United States
| | | | - Li Xing
- Pfizer Inc., Cambridge, Massachusetts 02139, United States
| | - Xiaojing Yang
- Pfizer Inc., Groton, Connecticut 06340, United States
| | - Xin Yang
- Pfizer Inc., Groton, Connecticut 06340, United States
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Affiliation(s)
- Guangbin Dong
- Department of Chemistry, The University of Texas at Austin
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Nuhant P, Allais C, Chen MZ, Coe JW, Dermenci A, Fadeyi OO, Flick AC, Mousseau JJ. Access to Highly Substituted 7-Azaindoles from 2-Fluoropyridines via 7-Azaindoline Intermediates. Org Lett 2015; 17:4292-5. [DOI: 10.1021/acs.orglett.5b02098] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Philippe Nuhant
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Christophe Allais
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Ming Z. Chen
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Jotham W. Coe
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Alpay Dermenci
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Olugbeminiyi O. Fadeyi
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - Andrew C. Flick
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
| | - James J. Mousseau
- Worldwide Medicinal Chemistry, Pfizer Inc., 445 Eastern
Point Road, Groton, Connecticut 06340, United States
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Dermenci A, Whittaker RE, Gao Y, Cruz FA, Yu ZX, Dong G. Rh-Catalyzed Decarbonylation of Conjugated Ynones via Carbon-Alkyne Bond Activation: Reaction Scope and Mechanistic Exploration via DFT Calculations. Chem Sci 2015; 6:3201-3210. [PMID: 26229587 PMCID: PMC4517480 DOI: 10.1039/c5sc00584a] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2015] [Accepted: 03/31/2015] [Indexed: 11/21/2022] Open
Abstract
In this full article, detailed development of a catalytic decarbonylation of conjugated monoynones to synthesize disubstituted alkynes is described. The reaction scope and limitation has been thoroughly investigated, and a broad range of functional groups including heterocycles were compatible under the catalytic conditions. Mechanistic exploration via DFT calculations has also been executed. Through the computational study, a proposed catalytic mechanism has been carefully evaluated. These efforts are expected to serve as an important exploratory study for developing catalytic alkyne-transfer reactions via carbon-alkyne bond activation.
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Affiliation(s)
- Alpay Dermenci
- The University of Texas at Austin, Department of Chemistry, Austin, TX 78712, United States
| | - Rachel E Whittaker
- The University of Texas at Austin, Department of Chemistry, Austin, TX 78712, United States
| | - Yang Gao
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering, College of Chemistry, Peking University, Beijing, 100871, China ; Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Hubei, Wuhan 430079, China
| | - Faben A Cruz
- The University of Texas at Austin, Department of Chemistry, Austin, TX 78712, United States
| | - Zhi-Xiang Yu
- Beijing National Laboratory of Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering, College of Chemistry, Peking University, Beijing, 100871, China
| | - Guangbin Dong
- The University of Texas at Austin, Department of Chemistry, Austin, TX 78712, United States
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Abstract
New modes of chemical reactivity are of high value to synthetic organic chemistry. In this vein, carbon-carbon (C-C) activation is an emerging field that offers new possibilities for synthesizing valuable complex molecules. This review discusses the pioneering stoichiometric discoveries in this field up to the most recent synthetic applications that apply catalytic transformations. Specifically, the review focuses on C-C activation in relatively unstrained systems, including stoichiometric reactions, chelation-directed and chelation-free catalytic reactions. While the field of C-C activation of relatively unstrained systems is underdeveloped, we expect that this review will provide insight into new developments and pave the path for robust, practical applications.
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Affiliation(s)
- Alpay Dermenci
- Pfizer Inc., Worldwide Medicinal Chemistry, Eastern Point Rd., Groton, CT 06340, USA
| | - Jotham W Coe
- Pfizer Inc., Worldwide Medicinal Chemistry, Eastern Point Rd., Groton, CT 06340, USA
| | - Guangbin Dong
- Department of Chemistry and Biochemistry, University of Texas at Austin, 1 University Station A5300, Austin, TX 78712-0165, USA
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Osuna S, Dermenci A, Miller SJ, Houk KN. The roles of counterion and water in a stereoselective cysteine-catalyzed Rauhut-Currier reaction: a challenge for computational chemistry. Chemistry 2013; 19:14245-53. [PMID: 24038400 PMCID: PMC3918516 DOI: 10.1002/chem.201300745] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 07/16/2013] [Indexed: 11/12/2022]
Abstract
The stereoselective Rauhut-Currier (RC) reaction catalyzed by a cysteine derivative has been explored computationally with density functional theory (M06-2X). Both methanethiol and a chiral cysteine derivative were studied as nucleophiles. The complete reaction pathway involves rate-determining elimination of the thiol catalyst from the Michael addition product. The stereoselective Rauhut-Currier reaction, catalyzed by a cysteine derivative as a nucleophile, has also been studied in detail. This reaction was experimentally found to be extremely sensitive to the reaction conditions, such as the number of water equivalents and the effect of potassium counterion. The E1cB process for catalyst elimination has been explored computationally for the eight possible stereoisomers. The effect of explicit water solvation and the presence of counterion (either K(+) or Na(+) ) has been studied for the lowest energy enantiomer pair (1S, 2R, 3S)/(1R, 2S, 3R).
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Affiliation(s)
- Sílvia Osuna
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095 (USA).
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Dermenci A, Whittaker RE, Dong G. Rh(I)-Catalyzed Decarbonylation of Diynones via C–C Activation: Orthogonal Synthesis of Conjugated Diynes. Org Lett 2013; 15:2242-5. [DOI: 10.1021/ol400815y] [Citation(s) in RCA: 81] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alpay Dermenci
- Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Rachel E. Whittaker
- Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Guangbin Dong
- Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, United States
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Dermenci A, Selig PS, Domaoal RA, Spasov KA, Anderson KS, Miller SJ. Quasi-Biomimetic Ring Contraction Catalyzed by a Cysteine-Based Nucleophile: Total Synthesis of Sch-642305, Some Analogs and their Putative anti-HIV Activities. Chem Sci 2011; 2. [PMID: 24179673 DOI: 10.1039/c1sc00221j] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Cysteine plays a number of important functional and structural roles in Nature, often in the realm of catalysis. Herein, we present an example of a cysteine-catalyzed Rauhut-Currier reaction for a potentially biomimetic synthesis of Sch-642305 and related analogs. In this key step of the synthesis we discuss interesting new discoveries and the importance of substrate-catalyst recognition, as well as cysteine's structural features. Also, we investigate the activity of Sch-642305 and four analogs in HIV-infected T-cells.
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Affiliation(s)
- Alpay Dermenci
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520 -8107 (USA)
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Affiliation(s)
- Carrie E. Aroyan
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
| | - Alpay Dermenci
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
| | - Scott J. Miller
- Department of Chemistry, Yale University, New Haven, Connecticut 06520
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