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Macdonald Miller S, Abbriano RM, Herdean A, Banati R, Ralph PJ, Pernice M. Random mutagenesis of Phaeodactylum tricornutum using ultraviolet, chemical, and X-radiation demonstrates the need for temporal analysis of phenotype stability. Sci Rep 2023; 13:22385. [PMID: 38104215 PMCID: PMC10725415 DOI: 10.1038/s41598-023-45899-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 10/25/2023] [Indexed: 12/19/2023] Open
Abstract
We investigated two non-ionising mutagens in the form of ultraviolet radiation (UV) and ethyl methanosulfonate (EMS) and an ionising mutagen (X-ray) as methods to increase fucoxanthin content in the model diatom Phaeodactylum tricornutum. We implemented an ultra-high throughput method using fluorescence-activated cell sorting (FACS) and live culture spectral deconvolution for isolation and screening of potential pigment mutants, and assessed phenotype stability by measuring pigment content over 6 months using high-performance liquid chromatography (HPLC) to investigate the viability of long-term mutants. Both UV and EMS resulted in significantly higher fucoxanthin within the 6 month period after treatment, likely as a result of phenotype instability. A maximum fucoxanthin content of 135 ± 10% wild-type found in the EMS strain, a 35% increase. We found mutants generated using all methods underwent reversion to the wild-type phenotype within a 6 month time period. X-ray treatments produced a consistently unstable phenotype even at the maximum treatment of 1000 Grays, while a UV mutant and an EMS mutant reverted to wild-type after 4 months and 6 months, respectively, despite showing previously higher fucoxanthin than wild-type. This work provides new insights into key areas of microalgal biotechnology, by (i) demonstrating the use of an ionising mutagen (X-ray) on a biotechnologically relevant microalga, and by (ii) introducing temporal analysis of mutants which has substantial implications for strain creation and utility for industrial applications.
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Affiliation(s)
- Sean Macdonald Miller
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Sydney, NSW, 2007, Australia.
| | - Raffaela M Abbriano
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Andrei Herdean
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Richard Banati
- Australian Nuclear Science and Technology Organisation (ANSTO), Kirrawee DC, NSW, 2232, Australia
- Faculty of Medicine and Health, University of Sydney, Camperdown, NSW, 2006, Australia
| | - Peter J Ralph
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Mathieu Pernice
- Faculty of Science, Climate Change Cluster (C3), University of Technology Sydney, Sydney, NSW, 2007, Australia
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2
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Matthews JL, Hoch L, Raina JB, Pablo M, Hughes DJ, Camp EF, Seymour JR, Ralph PJ, Suggett DJ, Herdean A. Symbiodiniaceae photophysiology and stress resilience is enhanced by microbial associations. Sci Rep 2023; 13:20724. [PMID: 38007500 PMCID: PMC10676399 DOI: 10.1038/s41598-023-48020-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 11/21/2023] [Indexed: 11/27/2023] Open
Abstract
Symbiodiniaceae form associations with extra- and intracellular bacterial symbionts, both in culture and in symbiosis with corals. Bacterial associates can regulate Symbiodiniaceae fitness in terms of growth, calcification and photophysiology. However, the influence of these bacteria on interactive stressors, such as temperature and light, which are known to influence Symbiodiniaceae physiology, remains unclear. Here, we examined the photophysiological response of two Symbiodiniaceae species (Symbiodinium microadriaticum and Breviolum minutum) cultured under acute temperature and light stress with specific bacterial partners from their microbiome (Labrenzia (Roseibium) alexandrii, Marinobacter adhaerens or Muricauda aquimarina). Overall, bacterial presence positively impacted Symbiodiniaceae core photosynthetic health (photosystem II [PSII] quantum yield) and photoprotective capacity (non-photochemical quenching; NPQ) compared to cultures with all extracellular bacteria removed, although specific benefits were variable across Symbiodiniaceae genera and growth phase. Symbiodiniaceae co-cultured with M. aquimarina displayed an inverse NPQ response under high temperatures and light, and those with L. alexandrii demonstrated a lowered threshold for induction of NPQ, potentially through the provision of antioxidant compounds such as zeaxanthin (produced by Muricauda spp.) and dimethylsulfoniopropionate (DMSP; produced by this strain of L. alexandrii). Our co-culture approach empirically demonstrates the benefits bacteria can deliver to Symbiodiniaceae photochemical performance, providing evidence that bacterial associates can play important functional roles for Symbiodiniaceae.
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Affiliation(s)
- Jennifer L Matthews
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia.
| | - Lilian Hoch
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - Jean-Baptiste Raina
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - Marine Pablo
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
- Sorbonne University, Paris, France
| | - David J Hughes
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
- Australian Institute of Marine Sciences, Townsville, QLD, Australia
| | - Emma F Camp
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - Justin R Seymour
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - Peter J Ralph
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - David J Suggett
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
- KAUST Reefscape Restoration Initiative (KRRI) and Red Sea Reseach Centre (RSRC), King Abdullah University of Science & Technology, 23955, Thuwal, Saudi Arabia
| | - Andrei Herdean
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
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Herdean A, Hall C, Hughes DJ, Kuzhiumparambil U, Diocaretz BC, Ralph PJ. Temperature mapping of non-photochemical quenching in Chlorella vulgaris. Photosynth Res 2023; 155:191-202. [PMID: 36417105 PMCID: PMC9879819 DOI: 10.1007/s11120-022-00981-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
Light intensity and temperature independently impact all parts of the photosynthetic machinery in plants and algae. Yet to date, the vast majority of pulse amplitude modulated (PAM) chlorophyll a fluorescence measurements have been performed at well-defined light intensities, but rarely at well-defined temperatures. In this work, we show that PAM measurements performed at various temperatures produce vastly different results in the chlorophyte Chlorella vulgaris. Using a recently developed Phenoplate technique to map quantum yield of Photosystem II (Y(II)) and non-photochemical quenching (NPQ) as a function of temperature, we show that the fast-relaxing NPQ follows an inverse normal distribution with respect to temperature and appears insensitive to previous temperature acclimation. The slow-relaxing or residual NPQ after 5 minutes of dark recovery follows a normal distribution similar to Y(II) but with a peak in the higher temperature range. Surprisingly, higher slow- and fast-relaxing NPQ values were observed in high-light relative to low-light acclimated cultures. Y(II) values peaked at the adaptation temperature regardless of temperature or light acclimation. Our novel findings show the complete temperature working spectrum of Y(II) and how excess energy quenching is managed across a wide range of temperatures in the model microalgal species C. vulgaris. Finally, we draw attention to the fact that the effect of the temperature component in PAM measurements has been wildly underestimated, and results from experiments at room temperature can be misleading.
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Affiliation(s)
- Andrei Herdean
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia.
| | - Christopher Hall
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | - David J Hughes
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia
| | | | | | - Peter J Ralph
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, 2007, Australia
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4
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Price S, Kuzhiumparambil U, Pernice M, Herdean A, Ralph P. Enhancement of cyanobacterial PHB production using random chemical mutagenesis with detection through FACS. Bioprocess Biosyst Eng 2023; 46:297-306. [PMID: 36571607 DOI: 10.1007/s00449-022-02834-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2022] [Accepted: 12/07/2022] [Indexed: 12/27/2022]
Abstract
Poly-hydroxy-butyrate (PHB) bioplastic resin can be made directly from atmospheric CO2 using cyanobacteria. However, higher PHB productivities are required before large-scale production is economically viable. Random mutagenesis offers a way to create new production strains with increased PHB yields and increased biomass densities without complex technical manipulation associated with genetically modified organisms. This study used staining with lipid fluorescent dye (BODIPY 493/593) and fluorescence-activated cell sorting (FACS) to select high lipid content mutants and followed this with a well plate growth screen. Thirteen mutants were selected for flask cultivation and two strains produced significantly higher PHB yields (29% and 26% higher than wild type), biomass accumulation (36% and 33% higher than wild type) and volumetric PHB density (75% and 67% higher than wild type). The maximum PHB yielding strain (% dcw) was 12.0%, which was 43% higher than the wild type (8.3% in this study). The highest volumetric PHB density was 18.8 mg PHB/L compared to 10.7 mg PHB/L by the wild type. To develop cyanobacterial strain with higher PHB productivities, the combination of random chemical mutagenesis and FACS holds great potential to promote cyanobacteria bioplastic production becoming economically viable.
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Affiliation(s)
- Shawn Price
- Climate Change Cluster, School of Life Sciences, The University of Technology, Sydney, Australia.
| | | | - Mathieu Pernice
- Climate Change Cluster, School of Life Sciences, The University of Technology, Sydney, Australia
| | - Andrei Herdean
- Climate Change Cluster, School of Life Sciences, The University of Technology, Sydney, Australia
| | - Peter Ralph
- Climate Change Cluster, School of Life Sciences, The University of Technology, Sydney, Australia
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Dukic E, Gollan PJ, Grebe S, Paakkarinen V, Herdean A, Aro EM, Spetea C. The Arabidopsis thylakoid chloride channel ClCe regulates ATP availability for light-harvesting complex II protein phosphorylation. Front Plant Sci 2022; 13:1050355. [PMID: 36483957 PMCID: PMC9722747 DOI: 10.3389/fpls.2022.1050355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 10/31/2022] [Indexed: 06/17/2023]
Abstract
Coping with changes in light intensity is challenging for plants, but well-designed mechanisms allow them to acclimate to most unpredicted situations. The thylakoid K+/H+ antiporter KEA3 and the voltage-dependent Cl- channel VCCN1 play important roles in light acclimation by fine-tuning electron transport and photoprotection. Good evidence exists that the thylakoid Cl- channel ClCe is involved in the regulation of photosynthesis and state transitions in conditions of low light. However, a detailed mechanistic understanding of this effect is lacking. Here we report that the ClCe loss-of-function in Arabidopsis thaliana results in lower levels of phosphorylated light-harvesting complex II (LHCII) proteins as well as lower levels of the photosystem I-LHCII complexes relative to wild type (WT) in low light conditions. The phosphorylation of the photosystem II core D1/D2 proteins was less affected either in low or high light conditions. In low light conditions, the steady-state levels of ATP synthase conductivity and of the total proton flux available for ATP synthesis were lower in ClCe loss-of-function mutants, but comparable to WT at standard and high light intensity. As a long-term acclimation strategy, expression of the ClCe gene was upregulated in WT plants grown in light-limiting conditions, but not in WT plants grown in standard light even when exposed for up to 8 h to low light. Taken together, these results suggest a role of ClCe in the regulation of the ATP synthase activity which under low light conditions impacts LHCII protein phosphorylation and state transitions.
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Affiliation(s)
- Emilija Dukic
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Peter J. Gollan
- Molecular Plant Biology Unit, Department of Life Technologies, University of Turku, Turku, Finland
| | - Steffen Grebe
- Molecular Plant Biology Unit, Department of Life Technologies, University of Turku, Turku, Finland
| | - Virpi Paakkarinen
- Molecular Plant Biology Unit, Department of Life Technologies, University of Turku, Turku, Finland
| | - Andrei Herdean
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW, Australia
| | - Eva-Mari Aro
- Molecular Plant Biology Unit, Department of Life Technologies, University of Turku, Turku, Finland
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
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Puia VR, Puia A, Fetti AC, Stefan PA, Valean D, Herdean A, Rusu I, Vasile T, Lebovici A, Al-Hajjar N. Computed Tomography for the Diagnosis of Intraperitoneal Infected Fluid Collections after Surgery for Gastric Cancer. Role of Texture Analysis. J Gastrointestin Liver Dis 2022; 31:184-190. [PMID: 35574623 DOI: 10.15403/jgld-4219] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
BACKGROUND AND AIMS Several computed tomographic (CT) imaging features have been proposed to describe the infection of postoperative abdominal fluid collections; however, these features are vague, and there is a significant overlap between infected and non-infected collections. We assessed the role of textural parameters as additional diagnostic tools for distinguishing between infected and non-infected peritoneal collections in patients operated for gastric cancer. METHODS From 527 patients operated for gastric cancer, we retrospectively selected 82 cases with intraperitoneal collections who underwent CT exams. The fluid component was analyzed through a novel method (texture analysis); different patterns of pixel intensity and distribution were extracted and processed through a dedicated software (MaZda). A univariate analysis comparing the parameters of texture analysis between the two groups was performed. Afterwards, a multivariate analysis was performed for the univariate statistically significant parameters. RESULTS The study included 82 patients with bacteriologically verified infected (n=40) and noninfected (n=42) intraperitoneal effusions. The univariate analysis evidenced statistically significant differences between all the parameters involved. The multivariate analysis highlighted 10 parameters as being statistically significant, adjusted to Bonferroni correction. CONCLUSIONS Our evidence supports the fact that textural analysis can be used as a complementary diagnostic tool for the detection of infected fluid collections after gastric cancer surgery. Further studies are required to validate the accuracy of this method.
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Affiliation(s)
- Vlad Radu Puia
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca; Surgery Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania. .
| | - Aida Puia
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca, Romania. .
| | - Alin Cornel Fetti
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca; Surgery Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
| | - Paul Andrei Stefan
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca; Radiology and Imaging Department, County Emergency Hospital, Cluj- Napoca, Romania.
| | - Dan Valean
- Surgery Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
| | - Andrei Herdean
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca, Romania.
| | - Ioana Rusu
- Pathology Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
| | - Tudor Vasile
- Radiology and Imaging Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
| | - Andrei Lebovici
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca; Radiology and Imaging Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
| | - Nadim Al-Hajjar
- Iuliu Haţieganu University of Medicine and Pharmacy, Cluj-Napoca; Surgery Department, Octavian Fodor Regional Institute of Gastroenterology and Hepatology, Cluj-Napoca, Romania.
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Pleşa-Furda P, Iancu I, Cioltean C, Breazu C, Brinzilă S, Odaini A, Bocşe H, Herdean A, Bartoş D, Turculeţ C, Iancu C, Bartoş A. Abdominal Sepsis - Current Definitions and Practice. Chirurgia (Bucur) 2021; 116:S16-S27. [PMID: 35274608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/01/2021] [Indexed: 06/14/2023]
Abstract
Abdominal sepsis remains the second most common source of sepsis, a life-threatening condition that became a global health priority in the medical field research. Open abdomen is part of the damage control surgery, a life-saving strategy in a well-selected group of surgical patients with severe abdominal sepsis and intra-abdominal hypertension. Definitions and recommendations in the management of abdominal sepsis and open abdomen have gradually evolved, as a reflection of the progress of both the comprehension of physiopathological mechanisms involved in sepsis and the technology of different temporary abdominal closure systems. The aim of this paper is to make an up-to-date literature narrative review of the definitions and current practice guidelines in abdominal sepsis, with illustration of clinical experience in the management of open abdomen wounds. In the past decades, progress has been made in the management of abdominal sepsis, with greatly ameliorated survival rates. Rapid diagnosis, extensive comprehension of the physiopathological mechanisms of sepsis, adapted fluid resuscitation, antimicrobial therapy and damage-control surgery, orchestrated by a multy-disciplinary team, play an equally important role in the prognosis of a patient.
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8
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Munteanu L, Iancu I, Breazu C, Cioltean C, Brânzilă S, Odainii A, Furda P, Bocşe H, Herdean A, Bartoş D, Bartoş A. Rare Causes of Gastrointestinal Bleeding: Focus on Pancreatic Pathology and Visceral Artery Aneurysms. Chirurgia (Bucur) 2021; 116:S5-S15. [PMID: 35274607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/01/2021] [Indexed: 06/14/2023]
Abstract
Beside the common situations of upper gastrointestinal bleeding (GIB) managed by endoscopy, there are clinical situations when the endoscopic approach is limited by the amount of blood, the hemodynamic instability, the intermittent nature of bleeding and a proper diagnosis and treatment requires radiological interventional methods and even surgery. The pancreatic pathology is rarely considered as a possible cause for patients that presents in emergencies with GIB. The rupture of visceral artery aneurysms (VAAs), without underlying pancreatic pathology, should also be regarded in the differential diagnosis of GIB. Even the natural history of VAAs is not well understood, there is a potential risk of bleeding in the gastrointestinal tract, peritoneal cavity and retroperitoneal space, that can result in death. In this paper, we aim to review the rare causes of GIB focusing on pancreatic pathology and VAAs, unrevealed by the underlying pathology and presenting in the emergency department with bleeding symptoms and signs.
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9
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Iancu I, Bartoş A, Cioltean C, Brânzilă S, Bocşe H, Herdean A, Hajjar NA, Puia C, Iancu C, Bartoş D. Up to Date and Perspectives for Hepatocellular Carcinoma\'s Intraoperative Ultrasound. Chirurgia (Bucur) 2021; 116:399-408. [PMID: 34498561 DOI: 10.21614/chirurgia.116.4.399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/01/2021] [Indexed: 11/23/2022]
Abstract
With all the technological progress registered so far, hepatocellular carcinoma is still a diagnostic and therapeutic challenge, the optimal management being ensured only by a personalized attitude, offered by a multidisciplinary approach. Ultrasound plays an essential role in the guidelines for this neoplasm, the intraoperative application being mandatory to increase the survival of these patients, when the surgical approach is possible and indicated. This paper highlights the main indications for intraoperative ultrasound in the diagnosis and treatment of hepatocellular carcinoma, along with areas that have developmental potential.
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Herdean A, Hall CC, Pham LL, Macdonald Miller S, Pernice M, Ralph PJ. Action Spectra and Excitation Emission Matrices reveal the broad range of usable photosynthetic active radiation for Phaeodactylum tricornutum. Biochim Biophys Acta Bioenerg 2021; 1862:148461. [PMID: 34090858 DOI: 10.1016/j.bbabio.2021.148461] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 05/24/2021] [Accepted: 05/29/2021] [Indexed: 11/16/2022]
Affiliation(s)
- Andrei Herdean
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia.
| | - Christopher C Hall
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia.
| | - Le Long Pham
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia
| | - Sean Macdonald Miller
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia.
| | - Mathieu Pernice
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia.
| | - Peter J Ralph
- University of Technology Sydney, Climate Change Cluster, Ultimo, NSW 2007, Australia.
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Commault AS, Kuzhiumparambil U, Herdean A, Fabris M, Jaramillo-Madrid AC, Abbriano RM, Ralph PJ, Pernice M. Methyl Jasmonate and Methyl-β-Cyclodextrin Individually Boost Triterpenoid Biosynthesis in Chlamydomonas Reinhardtii UVM4. Pharmaceuticals (Basel) 2021; 14:125. [PMID: 33562714 PMCID: PMC7915139 DOI: 10.3390/ph14020125] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 02/01/2021] [Accepted: 02/01/2021] [Indexed: 01/01/2023] Open
Abstract
The commercialisation of valuable plant triterpenoids faces major challenges, including low abundance in natural hosts and costly downstream purification procedures. Endeavours to produce these compounds at industrial scale using microbial systems are gaining attention. Here, we report on a strategy to enrich the biomass of the biotechnologically-relevant Chlamydomonas reinhardtii strain UVM4 with valuable triterpenes, such as squalene and (S)-2,3-epoxysqualene. C. reinhardtii UVM4 was subjected to the elicitor compounds methyl jasmonate (MeJA) and methyl-β-cyclodextrine (MβCD) to increase triterpene yields. MeJA treatment triggered oxidative stress, arrested growth, and altered the photosynthetic activity of the cells, while increasing squalene, (S)-2,3-epoxysqualene, and cycloartenol contents. Applying MβCD to cultures of C. reinhardtii lead to the sequestration of the two main sterols (ergosterol and 7-dehydroporiferasterol) into the growth medium and the intracellular accumulation of the intermediate cycloartenol, without compromising cell growth. When MβCD was applied in combination with MeJA, it counteracted the negative effects of MeJA on cell growth and physiology, but no synergistic effect on triterpene yield was observed. Together, our findings provide strategies for the triterpene enrichment of microalgal biomass and medium.
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Affiliation(s)
- Audrey S. Commault
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Unnikrishnan Kuzhiumparambil
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Andrei Herdean
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Michele Fabris
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
- Synthetic Biology Future Science Platform, CSIRO, Brisbane, QLD 4001, Australia
| | - Ana Cristina Jaramillo-Madrid
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Raffaela M. Abbriano
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Peter J. Ralph
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
| | - Mathieu Pernice
- Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; (U.K.); (A.H.); (M.F.); (A.C.J.-M.); (R.M.A.); (P.J.R.); (M.P.)
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12
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Iancu I, Bartos A, Bartos D, Herdean A, Betea I, Szabo B, Breazu C, Ciobanu L, Iancu C, Mitre C. Nanomedicine and contrast enhanced imaging. Applications in cancer diagnosis and therapy. Ann Ital Chir 2021; 92:105-115. [PMID: 34031282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
OBJECTIVE Nanotechnology and its applications in medicine made us live a new era of healthcare, particularly in oncology. The objective of this paper is to review the contribution of nanotechnology in clinical use of contrast agents for gastrointestinal cancer diagnosis and follow-up and to offer an overview of the impact of nanotechnology in the management of cancer. MATERIALS AND METHODS In this regard, we reviewed the main areas of expertise where nanotechnology has contributed to the improvement of diagnostic methods (CE-US, CE-CT, MRI), along with the therapeutic applications that nanoparticles can have. Last but not least, the article highlights the potential that theragnostic molecules can have in the diagnosis and treatment of neoplasia, including those in an advanced stage. RESULTS AND CONCLUSIONS Nanomedicine has the ability to improve the specificity and sensitivity of cancer diagnosis, together with the enhancing of the systemic cytostatic effect by developing nano bioconjugates that have a wider effect, higher tumor selectivity and thus, lower systemic toxicity. KEY WORDS Ablative treatment, Cancer, Contrast enhanced imaging, Drug delivery, Nanomedicine.
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Lampignano R, Neumann MHD, Weber S, Kloten V, Herdean A, Voss T, Groelz D, Babayan A, Tibbesma M, Schlumpberger M, Chemi F, Rothwell DG, Wikman H, Galizzi JP, Riise Bergheim I, Russnes H, Mussolin B, Bonin S, Voigt C, Musa H, Pinzani P, Lianidou E, Brady G, Speicher MR, Pantel K, Betsou F, Schuuring E, Kubista M, Ammerlaan W, Sprenger-Haussels M, Schlange T, Heitzer E. Multicenter Evaluation of Circulating Cell-Free DNA Extraction and Downstream Analyses for the Development of Standardized (Pre)analytical Work Flows. Clin Chem 2020; 66:149-160. [PMID: 31628139 DOI: 10.1373/clinchem.2019.306837] [Citation(s) in RCA: 83] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 08/05/2019] [Indexed: 12/14/2022]
Abstract
BACKGROUND In cancer patients, circulating cell-free DNA (ccfDNA) can contain tumor-derived DNA (ctDNA), which enables noninvasive diagnosis, real-time monitoring, and treatment susceptibility testing. However, ctDNA fractions are highly variable, which challenges downstream applications. Therefore, established preanalytical work flows in combination with cost-efficient and reproducible reference materials for ccfDNA analyses are crucial for analytical validity and subsequently for clinical decision-making. METHODS We describe the efforts of the Innovative Medicines Initiative consortium CANCER-ID (http://www.cancer-id.eu) for comparing different technologies for ccfDNA purification, quantification, and characterization in a multicenter setting. To this end, in-house generated mononucleosomal DNA (mnDNA) from lung cancer cell lines carrying known TP53 mutations was spiked in pools of plasma from healthy donors generated from 2 different blood collection tubes (BCTs). ccfDNA extraction was performed at 15 partner sites according to their respective routine practice. Downstream analysis of ccfDNA with respect to recovery, integrity, and mutation analysis was performed centralized at 4 different sites. RESULTS We demonstrate suitability of mnDNA as a surrogate for ccfDNA as a process quality control from nucleic acid extraction to mutation detection. Although automated extraction protocols and quantitative PCR-based quantification methods yielded the most consistent and precise results, some kits preferentially recovered spiked mnDNA over endogenous ccfDNA. Mutated TP53 fragments derived from mnDNA were consistently detected using both next-generation sequencing-based deep sequencing and droplet digital PCR independently of BCT. CONCLUSIONS This comprehensive multicenter comparison of ccfDNA preanalytical and analytical work flows is an important contribution to establishing evidence-based guidelines for clinically feasible (pre)analytical work flows.
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Affiliation(s)
| | | | - Sabrina Weber
- Institute of Human Genetics, Diagnostic and Research Center for Molecular BioMedicine, Medical University of Graz, Graz, Austria.,Christian Doppler Laboratory for Liquid Biopsies for Early Detection of Cancer, Graz, Austria
| | - Vera Kloten
- Bayer AG, Biomarker Research, Wuppertal, Germany
| | | | | | | | - Anna Babayan
- University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Marco Tibbesma
- University of Groningen, University Medical Center of Groningen, Groningen, the Netherlands
| | | | - Francesca Chemi
- CR-UK Manchester Institute, University of Manchester, Manchester, UK
| | | | - Harriet Wikman
- University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | | | - Inger Riise Bergheim
- Department of Cancer Genetics, Institute of Cancer Research, Oslo University Hospital, Oslo, Norway
| | - Hege Russnes
- Department of Cancer Genetics, Institute of Cancer Research, Oslo University Hospital, Oslo, Norway
| | | | - Serena Bonin
- University of Trieste, DSM-Cattinara Hospital, Trieste, Italy
| | | | - Hanny Musa
- Boehringer-Ingelheim, Ingelheim am Rhein, Germany
| | | | | | - Ged Brady
- CR-UK Manchester Institute, University of Manchester, Manchester, UK
| | - Michael R Speicher
- Institute of Human Genetics, Diagnostic and Research Center for Molecular BioMedicine, Medical University of Graz, Graz, Austria
| | - Klaus Pantel
- University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Fay Betsou
- Integrated BioBank of Luxembourg, Dudelange, Luxembourg
| | - Ed Schuuring
- University of Groningen, University Medical Center of Groningen, Groningen, the Netherlands
| | | | - Wim Ammerlaan
- Integrated BioBank of Luxembourg, Dudelange, Luxembourg
| | | | | | - Ellen Heitzer
- Institute of Human Genetics, Diagnostic and Research Center for Molecular BioMedicine, Medical University of Graz, Graz, Austria.,Christian Doppler Laboratory for Liquid Biopsies for Early Detection of Cancer, Graz, Austria
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14
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Babayan A, Neumann MHD, Herdean A, Shaffer JM, Janning M, Kobus F, Loges S, Di Pasquale F, Kubista M, Schlumpberger M, Lampignano R, Krahn T, Schlange T, Sprenger-Haussels M, Pantel K, Kloten V. Multicenter Evaluation of Independent High-Throughput and RT-qPCR Technologies for the Development of Analytical Workflows for Circulating miRNA Analysis. Cancers (Basel) 2020; 12:cancers12051166. [PMID: 32380788 PMCID: PMC7281602 DOI: 10.3390/cancers12051166] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 05/01/2020] [Accepted: 05/02/2020] [Indexed: 01/08/2023] Open
Abstract
Background: Among emerging circulating biomarkers, miRNA has the potential to detect lung cancer and follow the course of the disease. However, miRNA analysis deserves further standardization before implementation into clinical trials or practice. Here, we performed international ring experiments to explore (pre)-analytical factors relevant to the outcome of miRNA blood tests in the context of the EU network CANCER-ID. Methods: Cell-free (cfmiRNA) and extracellular vesicle-derived miRNA (EVmiRNA) were extracted using the miRNeasy Serum/Plasma Advanced, and the ExoRNeasy Maxi kit, respectively, in a plasma cohort of 27 NSCLC patients and 20 healthy individuals. Extracted miRNA was investigated using small RNA sequencing and hybridization platforms. Validation of the identified miRNA candidates was performed using quantitative PCR. Results: We demonstrate the highest read counts in healthy individuals and NSCLC patients using QIAseq. Moreover, QIAseq showed 15.9% and 162.9% more cfmiRNA and EVmiRNA miRNA counts, respectively, in NSCLC patients compared to healthy control samples. However, a systematic comparison of selected miRNAs revealed little agreement between high-throughput platforms, thus some miRNAs are detected with one technology, but not with the other. Adding to this, 35% (9 of 26) of selected miRNAs in the cfmiRNA and 42% (11 of 26) in the EVmiRNA fraction were differentially expressed by at least one qPCR platform; about half of the miRNAs (54%) were concordant for both platforms. Conclusions: Changing of (pre)-analytical methods of miRNA analysis has a significant impact on blood test results and is therefore a major confounding factor. In addition, to confirm miRNA biomarker candidates screening studies should be followed by targeted validation using an independent platform or technology.
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Affiliation(s)
- Anna Babayan
- Department of Tumor Biology, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany; (A.B.); (M.J.); (F.K.); (S.L.); (K.P.)
| | | | - Andrei Herdean
- TATAA Biocenter AB, 411 03 Gothenburg, Sweden; (A.H.); (M.K.)
| | | | - Melanie Janning
- Department of Tumor Biology, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany; (A.B.); (M.J.); (F.K.); (S.L.); (K.P.)
- Department of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Franca Kobus
- Department of Tumor Biology, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany; (A.B.); (M.J.); (F.K.); (S.L.); (K.P.)
- Department of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Sonja Loges
- Department of Tumor Biology, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany; (A.B.); (M.J.); (F.K.); (S.L.); (K.P.)
- Department of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
- Division of Personalized Medical Oncology, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany
- Department of Personalized Oncology, University Hospital Mannheim, 68167 Mannheim, Germany
| | | | - Mikael Kubista
- TATAA Biocenter AB, 411 03 Gothenburg, Sweden; (A.H.); (M.K.)
| | | | - Rita Lampignano
- Bayer AG, Pharmaceutical Division, Precision Medicine Markers, 42096 Wuppertal, Germany; (R.L.); (T.K.); (T.S.)
| | - Thomas Krahn
- Bayer AG, Pharmaceutical Division, Precision Medicine Markers, 42096 Wuppertal, Germany; (R.L.); (T.K.); (T.S.)
| | - Thomas Schlange
- Bayer AG, Pharmaceutical Division, Precision Medicine Markers, 42096 Wuppertal, Germany; (R.L.); (T.K.); (T.S.)
| | | | - Klaus Pantel
- Department of Tumor Biology, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany; (A.B.); (M.J.); (F.K.); (S.L.); (K.P.)
| | - Vera Kloten
- Bayer AG, Pharmaceutical Division, Precision Medicine Markers, 42096 Wuppertal, Germany; (R.L.); (T.K.); (T.S.)
- Correspondence:
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15
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Kloten V, Neumann MHD, Di Pasquale F, Sprenger-Haussels M, Shaffer JM, Schlumpberger M, Herdean A, Betsou F, Ammerlaan W, Af Hällström T, Serkkola E, Forsman T, Lianidou E, Sjöback R, Kubista M, Bender S, Lampignano R, Krahn T, Schlange T. Multicenter Evaluation of Circulating Plasma MicroRNA Extraction Technologies for the Development of Clinically Feasible Reverse Transcription Quantitative PCR and Next-Generation Sequencing Analytical Work Flows. Clin Chem 2019; 65:1132-1140. [PMID: 31235535 DOI: 10.1373/clinchem.2019.303271] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 05/20/2019] [Indexed: 12/27/2022]
Abstract
BACKGROUND In human body fluids, microRNA (miRNA) can be found as circulating cell-free miRNA (cfmiRNA), as well as secreted into extracellular vesicles (EVmiRNA). miRNAs are being intensively evaluated as minimally invasive liquid biopsy biomarkers in patients with cancer. The growing interest in developing clinical assays for circulating miRNA necessitates careful consideration of confounding effects of preanalytical and analytical parameters. METHODS By using reverse transcription quantitative real-time PCR and next-generation sequencing (NGS), we compared extraction efficiencies of 5 different protocols for cfmiRNA and 2 protocols for EVmiRNA isolation in a multicentric manner. The efficiency of the different extraction methods was evaluated by measuring exogenously spiked cel-miR-39 and 6 targeted miRNAs in plasma from 20 healthy individuals. RESULTS There were significant differences between the tested methods. Although column-based extraction methods were highly effective for the isolation of endogenous miRNA, phenol extraction combined with column-based miRNA purification and ultracentrifugation resulted in lower quality and quantity of isolated miRNA. Among all extraction methods, the ubiquitously expressed miR-16 was represented with high abundance when compared with other targeted miRNAs. In addition, the use of miR-16 as an endogenous control for normalization of quantification cycle values resulted in a decreased variability of column-based cfmiRNA extraction methods. Cluster analysis of normalized NGS counts clearly indicated a method-dependent bias. CONCLUSIONS The choice of plasma miRNA extraction methods affects the selection of potential miRNA marker candidates and mechanistic interpretation of results, which should be done with caution, particularly across studies using different protocols.
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Affiliation(s)
- Vera Kloten
- Bayer AG, Pharmaceutical Division, Biomarker Research, Wuppertal, Germany
| | | | | | | | | | | | | | - Fay Betsou
- Integrated BioBank of Luxembourg, Dudelange, Luxembourg
| | - Wim Ammerlaan
- Integrated BioBank of Luxembourg, Dudelange, Luxembourg
| | - Taija Af Hällström
- AstraZeneca, Espoo, Finland.,Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland.,Orion Pharma, Orion Corporation, Espoo, Finland
| | | | | | | | | | - Mikael Kubista
- TATAA Biocenter AB, Gothenburg, Sweden.,Institute of Biotechnology CAS, v. v. i., Vestec, Czech Republic
| | - Sebastian Bender
- Bayer AG, Pharmaceutical Division, Translational Assay Technology, Berlin, Germany
| | - Rita Lampignano
- Bayer AG, Pharmaceutical Division, Biomarker Research, Wuppertal, Germany
| | - Thomas Krahn
- Bayer AG, Pharmaceutical Division, Biomarker Research, Wuppertal, Germany
| | - Thomas Schlange
- Bayer AG, Pharmaceutical Division, Biomarker Research, Wuppertal, Germany;
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16
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Zizka A, Silvestro D, Andermann T, Azevedo J, Duarte Ritter C, Edler D, Farooq H, Herdean A, Ariza M, Scharn R, Svantesson S, Wengström N, Zizka V, Antonelli A. CoordinateCleaner
: Standardized cleaning of occurrence records from biological collection databases. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13152] [Citation(s) in RCA: 252] [Impact Index Per Article: 50.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexander Zizka
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- German Center for Integrative Biodiversity Research (iDiv) Leipzig Germany
| | - Daniele Silvestro
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Department of Computational BiologyUniversity of Lausanne Lausanne Switzerland
| | - Tobias Andermann
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
| | - Josué Azevedo
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
| | - Camila Duarte Ritter
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Department of Eukaryotic MicrobiologyUniversity of Duisburg‐Essen Essen Germany
| | - Daniel Edler
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Integrated Science LabDepartment of PhysicsUmeå University Umeå Sweden
| | - Harith Farooq
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Departamento de Biologia & CESAMUniversidade de AveiroAveiro Umeå Portugal
- Faculty of Natural Sciences at Lúrio UniversityUniversidade de Aveiro Pemba Mozambique
| | - Andrei Herdean
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
| | - María Ariza
- Natural History MuseumUniversity of Oslo Oslo Norway
| | - Ruud Scharn
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Department of Earth SciencesUniversity of Gothenburg Göteborg Sweden
| | - Sten Svantesson
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
| | - Niklas Wengström
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
| | - Vera Zizka
- Faculty of BiologyUniversity Duisburg‐Essen Essen Germany
| | - Alexandre Antonelli
- Department of Biological and Environmental SciencesUniversity of Gothenburg Göteborg Sweden
- Gothenburg Global Biodiversity Centre Göteborg Sweden
- Gothenburg Botanical Garden Göteborg Sweden
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17
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Herdea V, Ghionaru R, Costiug E, Brinza I, Rusn S, Comneam L, Egrin E, Rujan E, Chitanun L, Popn C, Soldean L, Herdean A, Tarciucn P. Prevention in primary care – intrafamilial predictive model (IPM). Ro J Pediatr 2018. [DOI: 10.37897/rjp.2018.3.4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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18
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Carstensen A, Herdean A, Schmidt SB, Sharma A, Spetea C, Pribil M, Husted S. The Impacts of Phosphorus Deficiency on the Photosynthetic Electron Transport Chain. Plant Physiol 2018; 177:271-284. [PMID: 29540590 PMCID: PMC5933119 DOI: 10.1104/pp.17.01624] [Citation(s) in RCA: 134] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2017] [Accepted: 02/25/2018] [Indexed: 05/18/2023]
Abstract
Phosphorus (P) is an essential macronutrient, and P deficiency limits plant productivity. Recent work showed that P deficiency affects electron transport to photosystem I (PSI), but the underlying mechanisms are unknown. Here, we present a comprehensive biological model describing how P deficiency disrupts the photosynthetic machinery and the electron transport chain through a series of sequential events in barley (Hordeum vulgare). P deficiency reduces the orthophosphate concentration in the chloroplast stroma to levels that inhibit ATP synthase activity. Consequently, protons accumulate in the thylakoids and cause lumen acidification, which inhibits linear electron flow. Limited plastoquinol oxidation retards electron transport to the cytochrome b6f complex, yet the electron transfer rate of PSI is increased under steady-state growth light and is limited under high-light conditions. Under P deficiency, the enhanced electron flow through PSI increases the levels of NADPH, whereas ATP production remains restricted and, hence, reduces CO2 fixation. In parallel, lumen acidification activates the energy-dependent quenching component of the nonphotochemical quenching mechanism and prevents the overexcitation of photosystem II and damage to the leaf tissue. Consequently, plants can be severely affected by P deficiency for weeks without displaying any visual leaf symptoms. All of the processes in the photosynthetic machinery influenced by P deficiency appear to be fully reversible and can be restored in less than 60 min after resupply of orthophosphate to the leaf tissue.
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Affiliation(s)
- Andreas Carstensen
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 405 30, Sweden
| | - Sidsel Birkelund Schmidt
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Anurag Sharma
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 405 30, Sweden
| | - Mathias Pribil
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Søren Husted
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
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19
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Bartos A, Bartos D, Herdean A, Szabo B, Militaru C, Raluca S, Calin M, Iancu C, Breazu C. Hyperthermic intraperitoneal chemotherapy (HIPEC). Mechanisms of action and the role of HIPEC in the treatment of peritoneal carcinomatosis. Ann Ital Chir 2018; 89:513-527. [PMID: 30665226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Peritoneal carcinomatosis represents the advanced, final stage of peritoneal malignancy, although it is often not accompanied by systemic neoplasia. The development of the pharmaceutical industry in combination with advanced surgery techniques has helped to improve the outcome of these patients, considered for a long time without radical resources. Tumoral cytoreduction followed by hypertermic intraperitoneal chemotherapy (HIPEC) is the treatment of choice for these patients, of course, this beeing done in a multimodal treatment, carefully chosen, following a multidisciplinary consensus. In this article we reviewed the main aspects of HIPEC procedure, describing the main chemotherapeutic agents used, highlighting the role that they play in this oncological treatment. Finally, we have pinpointed the main research lines in this field, which although have a well-established role in recent guidelines, have a great potential for development, with a maximum impact on the prognosis of patients with peritoneal metastases. KEY WORDS: Cytoreductive surgery, Hyperthermia, Intraperitoneal chemotherapy, Pharmacology, Peritoneal metastasis.
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20
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Spetea C, Herdean A, Allorent G, Carraretto L, Finazzi G, Szabo I. An update on the regulation of photosynthesis by thylakoid ion channels and transporters in Arabidopsis. Physiol Plant 2017; 161:16-27. [PMID: 28332210 DOI: 10.1111/ppl.12568] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Revised: 02/08/2017] [Accepted: 02/20/2017] [Indexed: 05/07/2023]
Abstract
In natural, variable environments, plants rapidly adjust photosynthesis for optimal balance between light absorption and utilization. There is increasing evidence suggesting that ion fluxes across the chloroplast thylakoid membrane play an important role in this regulation by affecting the proton motive force and consequently photosynthesis and thylakoid membrane ultrastructure. This article presents an update on the thylakoid ion channels and transporters characterized in Arabidopsis thaliana as being involved in these processes, as well as an outlook at the evolutionary conservation of their functions in other photosynthetic organisms. This is a contribution to shed light on the thylakoid network of ion fluxes and how they help plants to adjust photosynthesis in variable light environments.
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Affiliation(s)
- Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, 40530, Sweden
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, 40530, Sweden
| | - Guillaume Allorent
- Laboratoire de Physiologie Cellulaire et Végétale, UMR 5168, Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologie de Grenoble (BIG), Université Grenoble Alpes (UGA), Grenoble, 38100, France
| | - Luca Carraretto
- Department of Biology, University of Padova, Padova, Italy
- CNR Institute of Neuroscience, Padova, Italy
| | - Giovanni Finazzi
- Laboratoire de Physiologie Cellulaire et Végétale, UMR 5168, Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologie de Grenoble (BIG), Université Grenoble Alpes (UGA), Grenoble, 38100, France
| | - Ildikò Szabo
- Department of Biology, University of Padova, Padova, Italy
- CNR Institute of Neuroscience, Padova, Italy
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21
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Adolfsson L, Nziengui H, Abreu IN, Šimura J, Beebo A, Herdean A, Aboalizadeh J, Široká J, Moritz T, Novák O, Ljung K, Schoefs B, Spetea C. Enhanced Secondary- and Hormone Metabolism in Leaves of Arbuscular Mycorrhizal Medicago truncatula. Plant Physiol 2017; 175:392-411. [PMID: 28698354 PMCID: PMC5580739 DOI: 10.1104/pp.16.01509] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2016] [Accepted: 07/07/2017] [Indexed: 05/20/2023]
Abstract
Arbuscular mycorrhizas (AM) are the most common symbiotic associations between a plant's root compartment and fungi. They provide nutritional benefit (mostly inorganic phosphate [Pi]), leading to improved growth, and nonnutritional benefits, including defense responses to environmental cues throughout the host plant, which, in return, delivers carbohydrates to the symbiont. However, how transcriptional and metabolic changes occurring in leaves of AM plants differ from those induced by Pi fertilization is poorly understood. We investigated systemic changes in the leaves of mycorrhized Medicago truncatula in conditions with no improved Pi status and compared them with those induced by high-Pi treatment in nonmycorrhized plants. Microarray-based genome-wide profiling indicated up-regulation by mycorrhization of genes involved in flavonoid, terpenoid, jasmonic acid (JA), and abscisic acid (ABA) biosynthesis as well as enhanced expression of MYC2, the master regulator of JA-dependent responses. Accordingly, total anthocyanins and flavonoids increased, and most flavonoid species were enriched in AM leaves. Both the AM and Pi treatments corepressed iron homeostasis genes, resulting in lower levels of available iron in leaves. In addition, higher levels of cytokinins were found in leaves of AM- and Pi-treated plants, whereas the level of ABA was increased specifically in AM leaves. Foliar treatment of nonmycorrhized plants with either ABA or JA induced the up-regulation of MYC2, but only JA also induced the up-regulation of flavonoid and terpenoid biosynthetic genes. Based on these results, we propose that mycorrhization and Pi fertilization share cytokinin-mediated improved shoot growth, whereas enhanced ABA biosynthesis and JA-regulated flavonoid and terpenoid biosynthesis in leaves are specific to mycorrhization.
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Affiliation(s)
- Lisa Adolfsson
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Hugues Nziengui
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Ilka N Abreu
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umea, Sweden
| | - Jan Šimura
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of Czech Academy of Sciences and Faculty of Science of Palacký University, CZ-78371 Olomouc, Czech Republic
| | - Azeez Beebo
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Jila Aboalizadeh
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
| | - Jitka Široká
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of Czech Academy of Sciences and Faculty of Science of Palacký University, CZ-78371 Olomouc, Czech Republic
| | - Thomas Moritz
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umea, Sweden
| | - Ondřej Novák
- Laboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany of Czech Academy of Sciences and Faculty of Science of Palacký University, CZ-78371 Olomouc, Czech Republic
| | - Karin Ljung
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83 Umea, Sweden
| | - Benoît Schoefs
- Metabolism, Engineering of Microalgal Molecules and Applications, Mer Molécules Santé, University Bretagne Loire, Institut Universitaire Mer et Littoral - Fédération de Recherche 3473 Centre National de la Recherche Scientifique, University of Le Mans, 72085 Le Mans cedex 9, France
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden
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22
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Ciorogar G, Bartos A, Bartos D, Vesa SC, Pop M, Herdean A, Betea I, Ciorogar A, Mois E, Zaharie F, Iancu C. Rectal cancer: factors predicting short outcomes after radical anterior resection. Ann Ital Chir 2017; 88:505-513. [PMID: 29339590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
AIM This study analyzes risk factors implicated in postoperative complications and mortality after anterior resection in rectal cancer. MATERIAL AND METHODS A total number of 378 patients with anterior rectal resection, diagnosed with rectal cancer and admitted at the IIIrd Surgery Clinic, "Octavian Fodor" Regional Institute of Gastroenterology and Hepatology, Romania, between 2009 and 2016. The inclusion criteria were anterior rectal resections with curative visa for rectal cancer. The complications we assessed are the following: anastomotic fistula, intra-abdominal infections, postoperative bowel obstruction and wound infection. RESULTS There was statistical significance regarding male gender, emergency hospitalization, hypoproteinemia and the resumption of intestinal transit. Anterior rectal resection of tumors located on the middle rectum was associated with high rate of anastomotic fistula. Patients with manual suture of anastomosis developed intraabdominal abscess more frequently. In the multivariate analysis, hypoproteinemia and a number of lymph nodes >1 remained independently associated with the occurrence of wound infection. The 30-day mortality rate was 4.8% with 18 deaths and morbidity rate 20.6% with 78 cases. CONCLUSIONS Major complications after radical resection for rectal cancer are dependent on multiple variables such as male patients, those admitted in emergency and patients with hypoproteinemia. Location of tumor on middle rectum, manual suture of anastomosis, number of lymph nodes > 1 were associated with high rate of morbidity. Patients with coronary heart disease and diabetes mellitus didn't had statistical significance, but the rate of morbidity and mortality remains high in this groups. KEY WORDS Complications, Radical anterior resection, Rectal cancer, Risk factors.
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23
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Dana S, Herdean A, Lundin B, Spetea C. Each of the chloroplast potassium efflux antiporters affects photosynthesis and growth of fully developed Arabidopsis rosettes under short-day photoperiod. Physiol Plant 2016; 158:483-491. [PMID: 27080934 DOI: 10.1111/ppl.12452] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Revised: 03/08/2016] [Accepted: 03/12/2016] [Indexed: 06/05/2023]
Abstract
In Arabidopsis thaliana, the chloroplast harbors three potassium efflux antiporters (KEAs), namely KEA1 and KEA2 in the inner envelope and KEA3 in the thylakoid membrane. They may play redundant physiological roles as in our previous analyses of young developing Arabidopsis rosettes under long-day photoperiod (16 h light per day), chloroplast kea single mutants resembled the wild-type plants, whereas kea1kea2 and kea1kea2kea3 mutants were impaired in chloroplast development and photosynthesis resulting in stunted growth. Here, we aimed to study whether chloroplast KEAs play redundant roles in chloroplast function of older Arabidopsis plants with fully developed rosettes grown under short-day photoperiod (8 h light per day). Under these conditions, we found defects in photosynthesis and growth in the chloroplast kea single mutants, and most dramatic defects in the kea1kea2 double mutant. The mechanism behind these defects in the single mutants involves reduction in the electron transport rate (kea1 and kea3), and stomata conductance (kea1, kea2 and kea3), which in turn affect CO2 fixation rates. The kea1kea2 mutant, in addition to these alterations, displayed reduced levels of photosynthetic machinery. Taken together, our data suggest that, in addition to the previously reported roles in chloroplast development in young rosettes, each chloroplast KEA affects photosynthesis and growth of Arabidopsis fully developed rosettes.
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Affiliation(s)
- Somnath Dana
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Björn Lundin
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
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24
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Herdean A, Teardo E, Nilsson AK, Pfeil BE, Johansson ON, Ünnep R, Nagy G, Zsiros O, Dana S, Solymosi K, Garab G, Szabó I, Spetea C, Lundin B. A voltage-dependent chloride channel fine-tunes photosynthesis in plants. Nat Commun 2016; 7:11654. [PMID: 27216227 PMCID: PMC4890181 DOI: 10.1038/ncomms11654] [Citation(s) in RCA: 90] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 04/16/2016] [Indexed: 11/17/2022] Open
Abstract
In natural habitats, plants frequently experience rapid changes in the intensity of sunlight. To cope with these changes and maximize growth, plants adjust photosynthetic light utilization in electron transport and photoprotective mechanisms. This involves a proton motive force (PMF) across the thylakoid membrane, postulated to be affected by unknown anion (Cl(-)) channels. Here we report that a bestrophin-like protein from Arabidopsis thaliana functions as a voltage-dependent Cl(-) channel in electrophysiological experiments. AtVCCN1 localizes to the thylakoid membrane, and fine-tunes PMF by anion influx into the lumen during illumination, adjusting electron transport and the photoprotective mechanisms. The activity of AtVCCN1 accelerates the activation of photoprotective mechanisms on sudden shifts to high light. Our results reveal that AtVCCN1, a member of a conserved anion channel family, acts as an early component in the rapid adjustment of photosynthesis in variable light environments.
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Affiliation(s)
- Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Enrico Teardo
- Department of Biology, University of Padova, Padova 35121, Italy
| | - Anders K. Nilsson
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Bernard E. Pfeil
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Oskar N. Johansson
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Renáta Ünnep
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen 5232, Switzerland
- Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Budapest 1121, Hungary
| | - Gergely Nagy
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen 5232, Switzerland
- Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Budapest 1121, Hungary
| | - Ottó Zsiros
- Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, Szeged 6701, Hungary
| | - Somnath Dana
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Katalin Solymosi
- Department of Plant Anatomy, Eötvös Loránd University, Budapest 1117, Hungary
| | - Győző Garab
- Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, Szeged 6701, Hungary
| | - Ildikó Szabó
- Department of Biology, University of Padova, Padova 35121, Italy
- CNR Neuroscience Institute, Padova 35121, Italy
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
| | - Björn Lundin
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg 40530, Sweden
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25
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Schneider A, Steinberger I, Herdean A, Gandini C, Eisenhut M, Kurz S, Morper A, Hoecker N, Rühle T, Labs M, Flügge UI, Geimer S, Schmidt SB, Husted S, Weber APM, Spetea C, Leister D. The Evolutionarily Conserved Protein PHOTOSYNTHESIS AFFECTED MUTANT71 Is Required for Efficient Manganese Uptake at the Thylakoid Membrane in Arabidopsis. Plant Cell 2016; 28:892-910. [PMID: 27020959 PMCID: PMC4863382 DOI: 10.1105/tpc.15.00812] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 03/10/2016] [Accepted: 03/24/2016] [Indexed: 05/18/2023]
Abstract
In plants, algae, and cyanobacteria, photosystem II (PSII) catalyzes the light-driven oxidation of water. The oxygen-evolving complex of PSII is a Mn4CaO5 cluster embedded in a well-defined protein environment in the thylakoid membrane. However, transport of manganese and calcium into the thylakoid lumen remains poorly understood. Here, we show that Arabidopsis thaliana PHOTOSYNTHESIS AFFECTED MUTANT71 (PAM71) is an integral thylakoid membrane protein involved in Mn(2+) and Ca(2+) homeostasis in chloroplasts. This protein is required for normal operation of the oxygen-evolving complex (as evidenced by oxygen evolution rates) and for manganese incorporation. Manganese binding to PSII was severely reduced in pam71 thylakoids, particularly in PSII supercomplexes. In cation partitioning assays with intact chloroplasts, Mn(2+) and Ca(2+) ions were differently sequestered in pam71, with Ca(2+) enriched in pam71 thylakoids relative to the wild type. The changes in Ca(2+) homeostasis were accompanied by an increased contribution of the transmembrane electrical potential to the proton motive force across the thylakoid membrane. PSII activity in pam71 plants and the corresponding Chlamydomonas reinhardtii mutant cgld1 was restored by supplementation with Mn(2+), but not Ca(2+) Furthermore, PAM71 suppressed the Mn(2+)-sensitive phenotype of the yeast mutant Δpmr1 Therefore, PAM71 presumably functions in Mn(2+) uptake into thylakoids to ensure optimal PSII performance.
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Affiliation(s)
- Anja Schneider
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Iris Steinberger
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Gothenburg, Sweden
| | - Chiara Gandini
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Marion Eisenhut
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Samantha Kurz
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Anna Morper
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Natalie Hoecker
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Thilo Rühle
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Mathias Labs
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany
| | - Ulf-Ingo Flügge
- Biozentrum Köln, Botanisches Institut der Universität zu Köln, Lehrstuhl II, 50674 Köln, Germany
| | - Stefan Geimer
- Zellbiologie/Elektronenmikroskopie NW I/B1, Universität Bayreuth, 95447 Bayreuth, Germany
| | - Sidsel Birkelund Schmidt
- Plant and Soil Science Section, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Søren Husted
- Plant and Soil Science Section, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871 Frederiksberg C, Denmark
| | - Andreas P M Weber
- Institut für Biochemie der Pflanzen, Cluster of Excellence on Plant Science, Heinrich-Heine-Universität Düsseldorf, 40225 Düsseldorf, Germany
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Gothenburg, Sweden
| | - Dario Leister
- Molekularbiologie der Pflanzen (Botanik), Department Biologie I, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany Copenhagen Plant Science Centre, University of Copenhagen, 1871 Frederiksberg, Denmark
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26
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Herdean A, Nziengui H, Zsiros O, Solymosi K, Garab G, Lundin B, Spetea C. The Arabidopsis Thylakoid Chloride Channel AtCLCe Functions in Chloride Homeostasis and Regulation of Photosynthetic Electron Transport. Front Plant Sci 2016; 7:115. [PMID: 26904077 PMCID: PMC4746265 DOI: 10.3389/fpls.2016.00115] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2015] [Accepted: 01/21/2016] [Indexed: 05/20/2023]
Abstract
Chloride ions can be translocated across cell membranes through Cl(-) channels or Cl(-)/H(+) exchangers. The thylakoid-located member of the Cl(-) channel CLC family in Arabidopsis thaliana (AtCLCe) was hypothesized to play a role in photosynthetic regulation based on the initial photosynthetic characterization of clce mutant lines. The reduced nitrate content of Arabidopsis clce mutants suggested a role in regulation of plant nitrate homeostasis. In this study, we aimed to further investigate the role of AtCLCe in the regulation of ion homeostasis and photosynthetic processes in the thylakoid membrane. We report that the size and composition of proton motive force were mildly altered in two independent Arabidopsis clce mutant lines. Most pronounced effects in the clce mutants were observed on the photosynthetic electron transport of dark-adapted plants, based on the altered shape and associated parameters of the polyphasic OJIP kinetics of chlorophyll a fluorescence induction. Other alterations were found in the kinetics of state transition and in the macro-organization of photosystem II supercomplexes, as indicated by circular dichroism measurements. Pre-treatment with KCl but not with KNO3 restored the wild-type photosynthetic phenotype. Analyses by transmission electron microscopy revealed a bow-like arrangement of the thylakoid network and a large thylakoid-free stromal region in chloroplast sections from the dark-adapted clce plants. Based on these data, we propose that AtCLCe functions in Cl(-) homeostasis after transition from light to dark, which affects chloroplast ultrastructure and regulation of photosynthetic electron transport.
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Affiliation(s)
- Andrei Herdean
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Hugues Nziengui
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Ottó Zsiros
- Biological Research Center, Hungarian Academy of SciencesSzeged, Hungary
| | - Katalin Solymosi
- Department of Plant Anatomy, Eötvös Loránd UniversityBudapest, Hungary
| | - Győző Garab
- Biological Research Center, Hungarian Academy of SciencesSzeged, Hungary
| | - Björn Lundin
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of GothenburgGothenburg, Sweden
- *Correspondence: Cornelia Spetea
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27
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Karlsson PM, Herdean A, Adolfsson L, Beebo A, Nziengui H, Irigoyen S, Ünnep R, Zsiros O, Nagy G, Garab G, Aronsson H, Versaw WK, Spetea C. The Arabidopsis thylakoid transporter PHT4;1 influences phosphate availability for ATP synthesis and plant growth. Plant J 2015; 84:99-110. [PMID: 26255788 DOI: 10.1111/tpj.12962] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 07/14/2015] [Accepted: 08/03/2015] [Indexed: 05/24/2023]
Abstract
The Arabidopsis phosphate transporter PHT4;1 was previously localized to the chloroplast thylakoid membrane. Here we investigated the physiological consequences of the absence of PHT4;1 for photosynthesis and plant growth. In standard growth conditions, two independent Arabidopsis knockout mutant lines displayed significantly reduced leaf size and biomass but normal phosphorus content. When mutants were grown in high-phosphate conditions, the leaf phosphorus levels increased and the growth phenotype was suppressed. Photosynthetic measurements indicated that in the absence of PHT4;1 stromal phosphate was reduced to levels that limited ATP synthase activity. This resulted in reduced CO2 fixation and accumulation of soluble sugars, limiting plant growth. The mutants also displayed faster induction of non-photochemical quenching than the wild type, in line with the increased contribution of ΔpH to the proton-motive force across thylakoids. Small-angle neutron scattering showed a smaller lamellar repeat distance, whereas circular dichroism spectroscopy indicated a perturbed long-range order of photosystem II (PSII) complexes in the mutant thylakoids. The absence of PHT4;1 did not alter the PSII repair cycle, as indicated by wild-type levels of phosphorylation of PSII proteins, inactivation and D1 protein degradation. Interestingly, the expression of genes for several thylakoid proteins was downregulated in the mutants, but the relative levels of the corresponding proteins were either not affected or could not be discerned. Based on these data, we propose that PHT4;1 plays an important role in chloroplast phosphate compartmentation and ATP synthesis, which affect plant growth. It also maintains the ionic environment of thylakoids, which affects the macro-organization of complexes and induction of photoprotective mechanisms.
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Affiliation(s)
- Patrik M Karlsson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Lisa Adolfsson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Azeez Beebo
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Hugues Nziengui
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Sonia Irigoyen
- Department of Biology, Texas A&M University, 3258, TAMU College Station, TX, 77843, USA
| | - Renáta Ünnep
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen PSI, 5232, Switzerland
- Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Box 49, Budapest, H-1525, Hungary
| | - Ottó Zsiros
- Institute of Plant Biology, Biological Research Centre, Hungarian Academy of Sciences, Box 521, Szeged, H-6701, Hungary
| | - Gergely Nagy
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institute, Villigen PSI, 5232, Switzerland
- Institute for Solid State Physics and Optics, Wigner Research Centre for Physics, Hungarian Academy of Sciences, Box 49, Budapest, H-1525, Hungary
| | - Győző Garab
- Institute of Plant Biology, Biological Research Centre, Hungarian Academy of Sciences, Box 521, Szeged, H-6701, Hungary
| | - Henrik Aronsson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
| | - Wayne K Versaw
- Department of Biology, Texas A&M University, 3258, TAMU College Station, TX, 77843, USA
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, Gothenburg, 405 30, Sweden
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28
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Fristedt R, Herdean A, Blaby-Haas CE, Mamedov F, Merchant SS, Last RL, Lundin B. PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. Plant Physiol 2015; 167:481-92. [PMID: 25511433 PMCID: PMC4326745 DOI: 10.1104/pp.114.253336] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Photosystem II (PSII) is a multiprotein complex that catalyzes the light-driven water-splitting reactions of oxygenic photosynthesis. Light absorption by PSII leads to the production of excited states and reactive oxygen species that can cause damage to this complex. Here, we describe Arabidopsis (Arabidopsis thaliana) At1g71500, which encodes a previously uncharacterized protein that is a PSII auxiliary core protein and hence is named PHOTOSYSTEM II PROTEIN33 (PSB33). We present evidence that PSB33 functions in the maintenance of PSII-light-harvesting complex II (LHCII) supercomplex organization. PSB33 encodes a protein with a chloroplast transit peptide and one transmembrane segment. In silico analysis of PSB33 revealed a light-harvesting complex-binding motif within the transmembrane segment and a large surface-exposed head domain. Biochemical analysis of PSII complexes further indicates that PSB33 is an integral membrane protein located in the vicinity of LHCII and the PSII CP43 reaction center protein. Phenotypic characterization of mutants lacking PSB33 revealed reduced amounts of PSII-LHCII supercomplexes, very low state transition, and a lower capacity for nonphotochemical quenching, leading to increased photosensitivity in the mutant plants under light stress. Taken together, these results suggest a role for PSB33 in regulating and optimizing photosynthesis in response to changing light levels.
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Affiliation(s)
- Rikard Fristedt
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Andrei Herdean
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Crysten E Blaby-Haas
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Fikret Mamedov
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Sabeeha S Merchant
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Robert L Last
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
| | - Björn Lundin
- Department of Chemistry and Biochemistry (R.F., C.E.B.-H., S.S.M.) and Institute for Genomics and Proteomics (S.S.M.), University of California, Los Angeles, California 90095;Department of Biological and Environmental Sciences, University of Gothenburg, 405 30 Gothenburg, Sweden (A.H., B.L.);Department of Chemistry, Ångström Laboratory, Uppsala University, 751 20 Uppsala, Sweden (F.M.); andDepartment of Biochemistry and Molecular Biology and Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824 (R.L.L., B.L.)
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29
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Flood PJ, Yin L, Herdean A, Harbinson J, Aarts MGM, Spetea C. Natural variation in phosphorylation of photosystem II proteins in Arabidopsis thaliana: is it caused by genetic variation in the STN kinases? Philos Trans R Soc Lond B Biol Sci 2014; 369:20130499. [PMID: 24591726 DOI: 10.1098/rstb.2013.0499] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Reversible phosphorylation of photosystem II (PSII) proteins is an important regulatory mechanism that can protect plants from changes in ambient light intensity and quality. We hypothesized that there is natural variation in this process in Arabidopsis (Arabidopsis thaliana), and that this results from genetic variation in the STN7 and STN8 kinase genes. To test this, Arabidopsis accessions of diverse geographical origins were exposed to two light regimes, and the levels of phospho-D1 and phospho-light harvesting complex II (LHCII) proteins were quantified by western blotting with anti-phosphothreonine antibodies. Accessions were classified as having high, moderate or low phosphorylation relative to Col-0. This variation could not be explained by the abundance of the substrates in thylakoid membranes. In genotypes with atrazine-resistant forms of the D1 protein, low D1 and LHCII protein phosphorylation was observed, which may be due to low PSII efficiency, resulting in reduced activation of the STN kinases. In the remaining genotypes, phospho-D1 levels correlated with STN8 protein abundance in high-light conditions. In growth light, D1 and LHCII phosphorylation correlated with longitude and in the case of LHCII phosphorylation also with temperature variability. This suggests a possible role of natural variation in PSII protein phosphorylation in the adaptation of Arabidopsis to diverse environments.
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Affiliation(s)
- Pádraic J Flood
- Laboratory of Genetics, Wageningen University, , Wageningen 6708 PB, The Netherlands
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30
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Yin L, Fristedt R, Herdean A, Solymosi K, Bertrand M, Andersson MX, Mamedov F, Vener AV, Schoefs B, Spetea C. Photosystem II function and dynamics in three widely used Arabidopsis thaliana accessions. PLoS One 2012; 7:e46206. [PMID: 23029436 PMCID: PMC3460815 DOI: 10.1371/journal.pone.0046206] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2012] [Accepted: 08/30/2012] [Indexed: 12/23/2022] Open
Abstract
Columbia-0 (Col-0), Wassilewskija-4 (Ws-4), and Landsberg erecta-0 (Ler-0) are used as background lines for many public Arabidopsis mutant collections, and for investigation in laboratory conditions of plant processes, including photosynthesis and response to high-intensity light (HL). The photosystem II (PSII) complex is sensitive to HL and requires repair to sustain its function. PSII repair is a multistep process controlled by numerous factors, including protein phosphorylation and thylakoid membrane stacking. Here we have characterized the function and dynamics of PSII complex under growth-light and HL conditions. Ws-4 displayed 30% more thylakoid lipids per chlorophyll and 40% less chlorophyll per carotenoid than Col-0 and Ler-0. There were no large differences in thylakoid stacking, photoprotection and relative levels of photosynthetic complexes among the three accessions. An increased efficiency of PSII closure was found in Ws-4 following illumination with saturation flashes or continuous light. Phosphorylation of the PSII D1/D2 proteins was reduced by 50% in Ws-4 as compared to Col-0 and Ler-0. An increase in abundance of the responsible STN8 kinase in response to HL treatment was found in all three accessions, but Ws-4 displayed 50% lower levels than Col-0 and Ler-0. Despite this, the HL treatment caused in Ws-4 the lagest extent of PSII inactivation, disassembly, D1 protein degradation, and the largest decrease in the size of stacked thylakoids. The dilution of chlorophyll-protein complexes with additional lipids and carotenoids in Ws-4 may represent a mechanism to facilitate lateral protein traffic in the membrane, thus compensating for the lack of a full complement of STN8 kinase. Nevertheless, additional PSII damage occurs in Ws-4, which exceeds the D1 protein synthesis capacity, thus leading to enhanced photoinhibition. Our findings are valuable for selection of appropriate background line for PSII characterization in Arabidopsis mutants, and also provide the first insights into natural variation of PSII protein phosphorylation.
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Affiliation(s)
- Lan Yin
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Rikard Fristedt
- Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
| | - Andrei Herdean
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Katalin Solymosi
- Department of Plant Anatomy, Eötvös University, Budapest, Hungary
| | - Martine Bertrand
- National Institute for Marine Sciences and Techniques, Cnam, Cherbourg-Octeville, France
| | - Mats X. Andersson
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Fikret Mamedov
- Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden
| | - Alexander V. Vener
- Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
| | - Benoît Schoefs
- Mer Molécules Santé, EA2160, LUNAM Université, Université du Maine à Le Mans, Le Mans, France
| | - Cornelia Spetea
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- * E-mail:
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