1
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Rodríguez SG, Crosby P, Hansen LL, Grünewald E, Beale AD, Spangler RK, Rabbitts BM, Partch CL, Stangherlin A, O’Neill JS, van Ooijen G. Potassium rhythms couple the circadian clock to the cell cycle. bioRxiv 2024:2024.04.02.587153. [PMID: 38617352 PMCID: PMC11014554 DOI: 10.1101/2024.04.02.587153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
Circadian (~24 h) rhythms are a fundamental feature of life, and their disruption increases the risk of infectious diseases, metabolic disorders, and cancer1-6. Circadian rhythms couple to the cell cycle across eukaryotes7,8 but the underlying mechanism is unknown. We previously identified an evolutionarily conserved circadian oscillation in intracellular potassium concentration, [K+]i9,10. As critical events in the cell cycle are regulated by intracellular potassium11,12, an enticing hypothesis is that circadian rhythms in [K+]i form the basis of this coupling. We used a minimal model cell, the alga Ostreococcus tauri, to uncover the role of potassium in linking these two cycles. We found direct reciprocal feedback between [K+]i and circadian gene expression. Inhibition of proliferation by manipulating potassium rhythms was dependent on the phase of the circadian cycle. Furthermore, we observed a total inhibition of cell proliferation when circadian gene expression is inhibited. Strikingly, under these conditions a sudden enforced gradient of extracellular potassium was sufficient to induce a round of cell division. Finally, we provide evidence that interactions between potassium and circadian rhythms also influence proliferation in mammalian cells. These results establish circadian regulation of intracellular potassium levels as a primary factor coupling the cell- and circadian cycles across diverse organisms.
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Affiliation(s)
- Sergio Gil Rodríguez
- School of Biological Sciences, University of Edinburgh, Max Born Crescent EH9 3BF Edinburgh, United Kingdom
| | - Priya Crosby
- Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Louise L. Hansen
- School of Biological Sciences, University of Edinburgh, Max Born Crescent EH9 3BF Edinburgh, United Kingdom
| | - Ellen Grünewald
- School of Biological Sciences, University of Edinburgh, Max Born Crescent EH9 3BF Edinburgh, United Kingdom
| | - Andrew D. Beale
- UKRI MRC Laboratory of Molecular Biology, Francis Crick Ave, Cambridge, CB2 0QH, United Kingdom
| | - Rebecca K. Spangler
- Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Beverley M. Rabbitts
- Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Carrie L. Partch
- Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA, 95064, USA
| | - Alessandra Stangherlin
- Faculty of Medicine and University Hospital Cologne, Cluster of Excellence Cellular Stress Responses in Aging-associated Diseases (CECAD), Institute for Mitochondrial Diseases and Ageing, University of Cologne, Joseph-Stelzmann-Str, 50931, Cologne, Germany
| | - John S. O’Neill
- UKRI MRC Laboratory of Molecular Biology, Francis Crick Ave, Cambridge, CB2 0QH, United Kingdom
| | - Gerben van Ooijen
- School of Biological Sciences, University of Edinburgh, Max Born Crescent EH9 3BF Edinburgh, United Kingdom
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2
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Watson JL, Seinkmane E, Styles CT, Mihut A, Krüger LK, McNally KE, Planelles-Herrero VJ, Dudek M, McCall PM, Barbiero S, Vanden Oever M, Peak-Chew SY, Porebski BT, Zeng A, Rzechorzek NM, Wong DCS, Beale AD, Stangherlin A, Riggi M, Iwasa J, Morf J, Miliotis C, Guna A, Inglis AJ, Brugués J, Voorhees RM, Chambers JE, Meng QJ, O'Neill JS, Edgar RS, Derivery E. Author Correction: Macromolecular condensation buffers intracellular water potential. Nature 2024; 628:E4. [PMID: 38589575 DOI: 10.1038/s41586-024-07346-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/10/2024]
Affiliation(s)
| | | | | | - Andrei Mihut
- MRC Laboratory of Molecular Biology, Cambridge, UK
| | | | | | | | - Michal Dudek
- Wellcome Centre for Cell Matrix Research, University of Manchester, Manchester, UK
| | - Patrick M McCall
- Cluster of Excellence Physics of Life, TU Dresden, Dresden, Germany
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
| | | | | | | | | | - Aiwei Zeng
- MRC Laboratory of Molecular Biology, Cambridge, UK
| | | | | | | | - Alessandra Stangherlin
- MRC Laboratory of Molecular Biology, Cambridge, UK
- Cluster of Excellence Cellular Stress Responses in Aging-associated Diseases (CECAD), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne, Germany
| | - Margot Riggi
- Department of Biochemistry, University of Utah, Salt Lake City, UT, USA
| | - Janet Iwasa
- Department of Biochemistry, University of Utah, Salt Lake City, UT, USA
| | - Jörg Morf
- Laboratory of Nuclear Dynamics, Babraham Institute, Cambridge, UK
| | | | - Alina Guna
- California Institute of Technology, Pasadena, CA, USA
| | | | - Jan Brugués
- Cluster of Excellence Physics of Life, TU Dresden, Dresden, Germany
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
| | | | | | - Qing-Jun Meng
- Wellcome Centre for Cell Matrix Research, University of Manchester, Manchester, UK
| | | | - Rachel S Edgar
- Department of Infectious Disease, Imperial College London, London, UK.
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3
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Watson JL, Seinkmane E, Styles CT, Mihut A, Krüger LK, McNally KE, Planelles-Herrero VJ, Dudek M, McCall PM, Barbiero S, Vanden Oever M, Peak-Chew SY, Porebski BT, Zeng A, Rzechorzek NM, Wong DCS, Beale AD, Stangherlin A, Riggi M, Iwasa J, Morf J, Miliotis C, Guna A, Inglis AJ, Brugués J, Voorhees RM, Chambers JE, Meng QJ, O'Neill JS, Edgar RS, Derivery E. Macromolecular condensation buffers intracellular water potential. Nature 2023; 623:842-852. [PMID: 37853127 PMCID: PMC10665201 DOI: 10.1038/s41586-023-06626-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 09/08/2023] [Indexed: 10/20/2023]
Abstract
Optimum protein function and biochemical activity critically depends on water availability because solvent thermodynamics drive protein folding and macromolecular interactions1. Reciprocally, macromolecules restrict the movement of 'structured' water molecules within their hydration layers, reducing the available 'free' bulk solvent and therefore the total thermodynamic potential energy of water, or water potential. Here, within concentrated macromolecular solutions such as the cytosol, we found that modest changes in temperature greatly affect the water potential, and are counteracted by opposing changes in osmotic strength. This duality of temperature and osmotic strength enables simple manipulations of solvent thermodynamics to prevent cell death after extreme cold or heat shock. Physiologically, cells must sustain their activity against fluctuating temperature, pressure and osmotic strength, which impact water availability within seconds. Yet, established mechanisms of water homeostasis act over much slower timescales2,3; we therefore postulated the existence of a rapid compensatory response. We find that this function is performed by water potential-driven changes in macromolecular assembly, particularly biomolecular condensation of intrinsically disordered proteins. The formation and dissolution of biomolecular condensates liberates and captures free water, respectively, quickly counteracting thermal or osmotic perturbations of water potential, which is consequently robustly buffered in the cytoplasm. Our results indicate that biomolecular condensation constitutes an intrinsic biophysical feedback response that rapidly compensates for intracellular osmotic and thermal fluctuations. We suggest that preserving water availability within the concentrated cytosol is an overlooked evolutionary driver of protein (dis)order and function.
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Affiliation(s)
| | | | | | - Andrei Mihut
- MRC Laboratory of Molecular Biology, Cambridge, UK
| | | | | | | | - Michal Dudek
- Wellcome Centre for Cell Matrix Research, University of Manchester, Manchester, UK
| | - Patrick M McCall
- Cluster of Excellence Physics of Life, TU Dresden, Dresden, Germany
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
| | | | | | | | | | - Aiwei Zeng
- MRC Laboratory of Molecular Biology, Cambridge, UK
| | | | | | | | - Alessandra Stangherlin
- MRC Laboratory of Molecular Biology, Cambridge, UK
- Cluster of Excellence Cellular Stress Responses in Aging-associated Diseases (CECAD), Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne, Germany
| | - Margot Riggi
- Department of Biochemistry, University of Utah, Salt Lake City, UT, USA
| | - Janet Iwasa
- Department of Biochemistry, University of Utah, Salt Lake City, UT, USA
| | - Jörg Morf
- Laboratory of Nuclear Dynamics, Babraham Institute, Cambridge, UK
| | | | - Alina Guna
- California Institute of Technology, Pasadena, CA, USA
| | | | - Jan Brugués
- Cluster of Excellence Physics of Life, TU Dresden, Dresden, Germany
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
| | | | | | - Qing-Jun Meng
- Wellcome Centre for Cell Matrix Research, University of Manchester, Manchester, UK
| | | | - Rachel S Edgar
- Department of Infectious Disease, Imperial College London, London, UK.
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4
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Beale AD, Hayter EA, Crosby P, Valekunja UK, Edgar RS, Chesham JE, Maywood ES, Labeed FH, Reddy AB, Wright KP, Lilley KS, Bechtold DA, Hastings MH, O'Neill JS. Mechanisms and physiological function of daily haemoglobin oxidation rhythms in red blood cells. EMBO J 2023; 42:e114164. [PMID: 37554073 PMCID: PMC10548169 DOI: 10.15252/embj.2023114164] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 05/16/2023] [Accepted: 07/16/2023] [Indexed: 08/10/2023] Open
Abstract
Cellular circadian rhythms confer temporal organisation upon physiology that is fundamental to human health. Rhythms are present in red blood cells (RBCs), the most abundant cell type in the body, but their physiological function is poorly understood. Here, we present a novel biochemical assay for haemoglobin (Hb) oxidation status which relies on a redox-sensitive covalent haem-Hb linkage that forms during SDS-mediated cell lysis. Formation of this linkage is lowest when ferrous Hb is oxidised, in the form of ferric metHb. Daily haemoglobin oxidation rhythms are observed in mouse and human RBCs cultured in vitro, or taken from humans in vivo, and are unaffected by mutations that affect circadian rhythms in nucleated cells. These rhythms correlate with daily rhythms in core body temperature, with temperature lowest when metHb levels are highest. Raising metHb levels with dietary sodium nitrite can further decrease daytime core body temperature in mice via nitric oxide (NO) signalling. These results extend our molecular understanding of RBC circadian rhythms and suggest they contribute to the regulation of body temperature.
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Affiliation(s)
| | - Edward A Hayter
- Centre for Biological Timing, Faculty of Biology, Medicine and HealthUniversity of ManchesterManchesterUK
| | - Priya Crosby
- MRC Laboratory of Molecular BiologyCambridgeUK
- Present address:
Department of Chemistry and BiochemistryUniversity of California, Santa CruzSanta CruzCAUSA
| | - Utham K Valekunja
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPAUSA
- Institute for Translational Medicine and Therapeutics, Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPAUSA
| | - Rachel S Edgar
- Department of Infectious DiseasesImperial College LondonLondonUK
| | | | | | - Fatima H Labeed
- Faculty of Engineering and Physical SciencesUniversity of SurreyGuildfordUK
| | - Akhilesh B Reddy
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPAUSA
- Institute for Translational Medicine and Therapeutics, Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPAUSA
| | - Kenneth P Wright
- Department of Integrative Physiology, Sleep and Chronobiology LaboratoryUniversity of Colorado BoulderBoulderCOUSA
| | - Kathryn S Lilley
- Cambridge Centre for Proteomics, Department of BiochemistryUniversity of CambridgeCambridgeUK
| | - David A Bechtold
- Centre for Biological Timing, Faculty of Biology, Medicine and HealthUniversity of ManchesterManchesterUK
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5
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Labeed FH, Beale AD, Schneider P, Kitcatt SJ, Kruchek EJ, Reece SE. Circadian rhythmicity in murine blood: Electrical effects of malaria infection and anemia. Front Bioeng Biotechnol 2022; 10:994487. [PMID: 36440448 PMCID: PMC9686327 DOI: 10.3389/fbioe.2022.994487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/27/2022] [Indexed: 11/11/2022] Open
Abstract
Circadian rhythms are biological adaptations to the day-night cycle, whereby cells adapt to changes in the external environment or internal physiology according to the time of day. Whilst many cellular clock mechanisms involve gene expression feedback mechanisms, clocks operate even where gene expression is absent. For example, red blood cells (RBCs) do not have capacity for gene expression, and instead possess an electrophysiological oscillator where cytosolic potassium plays a key role in timekeeping. We examined murine blood under normal conditions as well as in two perturbed states, malaria infection and induced anemia, to assess changes in baseline cellular electrophysiology and its implications for the electrophysiological oscillator. Blood samples were analyzed at 4-h intervals over 2 days by dielectrophoresis, and microscopic determination of parasitemia. We found that cytoplasmic conductivity (indicating the concentration of free ions in the cytoplasm and related to the membrane potential) exhibited circadian rhythmic behavior in all three cases (control, malaria and anemia). Compared to control samples, cytoplasm conductivity was decreased in the anemia group, whilst malaria-infected samples were in antiphase to control. Furthermore, we identified rhythmic behavior in membrane capacitance of malaria infected cells that was not replicated in the other samples. Finally, we reveal the historically famous rhythmicity of malaria parasite replication is in phase with cytoplasm conductivity. Our findings suggest the electrophysiological oscillator can impact on malaria parasite replication and/or is vulnerable to perturbation by rhythmic parasite activities.
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Affiliation(s)
- Fatima H. Labeed
- Centre for Biomedical Engineering, University of Surrey, Guildford, United Kingdom,*Correspondence: Fatima H. Labeed,
| | - Andrew D. Beale
- Centre for Biomedical Engineering, University of Surrey, Guildford, United Kingdom
| | - Petra Schneider
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Stephen J. Kitcatt
- Centre for Biomedical Engineering, University of Surrey, Guildford, United Kingdom
| | - Emily J. Kruchek
- Centre for Biomedical Engineering, University of Surrey, Guildford, United Kingdom
| | - Sarah E. Reece
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
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6
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Wong DCS, Seinkmane E, Zeng A, Stangherlin A, Rzechorzek NM, Beale AD, Day J, Reed M, Peak‐Chew SY, Styles CT, Edgar RS, Putker M, O’Neill JS. CRYPTOCHROMES promote daily protein homeostasis. EMBO J 2022; 41:e108883. [PMID: 34842284 PMCID: PMC8724739 DOI: 10.15252/embj.2021108883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 11/07/2021] [Accepted: 11/09/2021] [Indexed: 11/29/2022] Open
Abstract
The daily organisation of most mammalian cellular functions is attributed to circadian regulation of clock-controlled protein expression, driven by daily cycles of CRYPTOCHROME-dependent transcriptional feedback repression. To test this, we used quantitative mass spectrometry to compare wild-type and CRY-deficient fibroblasts under constant conditions. In CRY-deficient cells, we found that temporal variation in protein, phosphopeptide, and K+ abundance was at least as great as wild-type controls. Most strikingly, the extent of temporal variation within either genotype was much smaller than overall differences in proteome composition between WT and CRY-deficient cells. This proteome imbalance in CRY-deficient cells and tissues was associated with increased susceptibility to proteotoxic stress, which impairs circadian robustness, and may contribute to the wide-ranging phenotypes of CRY-deficient mice. Rather than generating large-scale daily variation in proteome composition, we suggest it is plausible that the various transcriptional and post-translational functions of CRY proteins ultimately act to maintain protein and osmotic homeostasis against daily perturbation.
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Affiliation(s)
| | | | - Aiwei Zeng
- MRC Laboratory of Molecular BiologyCambridgeUK
| | | | | | | | - Jason Day
- Department of Earth SciencesUniversity of CambridgeCambridgeUK
| | - Martin Reed
- MRC Laboratory of Molecular BiologyCambridgeUK
| | | | | | - Rachel S Edgar
- Department of Infectious DiseasesImperial CollegeLondonUK
| | - Marrit Putker
- MRC Laboratory of Molecular BiologyCambridgeUK
- Present address:
Crown BioscienceUtrechtthe Netherlands
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7
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Abstract
Dielectrophoresis (DEP) enables the measurement of population-level electrophysiology in many cell types by examining their interaction with an externally applied electric field. Here we describe the application of DEP to the measurement of circadian rhythms in a non-nucleated cell type, the human red blood cell. Using DEP, population-level electrophysiology of ~20,000 red blood cells can be measured from start to finish in less than 3 min, and can be repeated over several days to reveal cell-autonomous daily regulation of membrane electrophysiology. This method is amenable to the characterization of circadian rhythms by altering entrainment and free-run conditions or through pharmacological perturbation.
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Affiliation(s)
| | - Fatima H Labeed
- School of Mechanical Engineering Sciences, University of Surrey, Guildford, UK
| | - Stephen J Kitcatt
- School of Mechanical Engineering Sciences, University of Surrey, Guildford, UK
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8
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Beale AD, Labeed FH, Kitcatt SJ, O'Neill JS. Detecting Circadian Rhythms in Human Red Blood Cells by Dielectrophoresis. Methods Mol Biol 2022; 2482:255-264. [PMID: 35610432 DOI: 10.1007/978-1-0716-2249-0_17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Dielectrophoresis (DEP) enables the measurement of population-level electrophysiology in many cell types by examining their interaction with an externally applied electric field. Here we describe the application of DEP to the measurement of circadian rhythms in a non-nucleated cell type, the human red blood cell. Using DEP, population-level electrophysiology of ~20,000 red blood cells can be measured from start to finish in less than 3 min, and can be repeated over several days to reveal cell-autonomous daily regulation of membrane electrophysiology. This method is amenable to the characterization of circadian rhythms by altering entrainment and free-run conditions or through pharmacological perturbation.
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Affiliation(s)
| | - Fatima H Labeed
- School of Mechanical Engineering Sciences, University of Surrey, Guildford, UK
| | - Stephen J Kitcatt
- School of Mechanical Engineering Sciences, University of Surrey, Guildford, UK
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9
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O'Neill JS, Hoyle NP, Robertson JB, Edgar RS, Beale AD, Peak-Chew SY, Day J, Costa ASH, Frezza C, Causton HC. Author Correction: Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis. Nat Commun 2021; 12:7269. [PMID: 34880246 PMCID: PMC8654835 DOI: 10.1038/s41467-021-27497-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- John S O'Neill
- MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK.
| | | | | | - Rachel S Edgar
- Molecular Virology, Department of Medicine, Imperial College, London, W2 1NY, UK
| | - Andrew D Beale
- MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK
| | | | - Jason Day
- Department of Earth Sciences, University of Cambridge, Cambridge, CB2 3EQ, UK
| | - Ana S H Costa
- MRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.,Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA
| | - Christian Frezza
- MRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK
| | - Helen C Causton
- Columbia University Medical Center, New York, NY, 10032, USA.
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10
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Stangherlin A, Watson JL, Wong DCS, Barbiero S, Zeng A, Seinkmane E, Chew SP, Beale AD, Hayter EA, Guna A, Inglis AJ, Putker M, Bartolami E, Matile S, Lequeux N, Pons T, Day J, van Ooijen G, Voorhees RM, Bechtold DA, Derivery E, Edgar RS, Newham P, O'Neill JS. Publisher Correction: Compensatory ion transport buffers daily protein rhythms to regulate osmotic balance and cellular physiology. Nat Commun 2021; 12:6988. [PMID: 34819501 PMCID: PMC8613194 DOI: 10.1038/s41467-021-26725-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Affiliation(s)
| | | | | | | | - Aiwei Zeng
- MRC Laboratory of Molecular Biology, Cambridge, UK
| | | | | | | | - Edward A Hayter
- Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | | | | | - Marrit Putker
- MRC Laboratory of Molecular Biology, Cambridge, UK.,Crown Bioscience Netherlands B.V., Utrecht, The Netherlands
| | - Eline Bartolami
- Department of Chemistry, University of Geneva, Geneva, Switzerland.,CEA, IRIG, SyMMES, Grenoble, France
| | - Stefan Matile
- Department of Chemistry, University of Geneva, Geneva, Switzerland
| | - Nicolas Lequeux
- LPEM - ESPCI Paris, PSL, CNRS, Sorbonne Université, Paris, France
| | - Thomas Pons
- LPEM - ESPCI Paris, PSL, CNRS, Sorbonne Université, Paris, France
| | - Jason Day
- Department of Earth Sciences, University of Cambridge, Cambridge, UK
| | - Gerben van Ooijen
- School of Biological Sciences, University of Edinburgh, Edinburgh, UK
| | | | - David A Bechtold
- Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | | | - Rachel S Edgar
- Department of Infectious Diseases, Imperial College London, London, UK
| | - Peter Newham
- Clinical Pharmacology and Safety Sciences, R&D, AstraZeneca, Cambridge, UK
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11
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Hughes MP, Kruchek EJ, Beale AD, Kitcatt SJ, Qureshi S, Trott ZP, Charbonnel O, Agbaje PA, Henslee EA, Dorey RA, Lewis R, Labeed FH. V m-related extracellular potentials observed in red blood cells. Sci Rep 2021; 11:19446. [PMID: 34593849 PMCID: PMC8484267 DOI: 10.1038/s41598-021-98102-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 08/25/2021] [Indexed: 11/16/2022] Open
Abstract
Even in nonexcitable cells, the membrane potential Vm is fundamental to cell function, with roles from ion channel regulation, development, to cancer metastasis. Vm arises from transmembrane ion concentration gradients; standard models assume homogeneous extracellular and intracellular ion concentrations, and that Vm only exists across the cell membrane and has no significance beyond it. Using red blood cells, we show that this is incorrect, or at least incomplete; Vm is detectable beyond the cell surface, and modulating Vm produces quantifiable and consistent changes in extracellular potential. Evidence strongly suggests this is due to capacitive coupling between Vm and the electrical double layer, rather than molecular transporters. We show that modulating Vm changes the extracellular ion composition, mimicking the behaviour if voltage-gated ion channels in non-excitable channels. We also observed Vm-synchronised circadian rhythms in extracellular potential, with significant implications for cell–cell interactions and cardiovascular disease.
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Affiliation(s)
- Michael Pycraft Hughes
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK.
| | - Emily J Kruchek
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Andrew D Beale
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK.,MRC Laboratory for Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Stephen J Kitcatt
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Sara Qureshi
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Zachary P Trott
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Oriane Charbonnel
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK.,School of Engineering, École Centrale de Lyon, 36 Avenue Guy de Collongue, 69134, Écully, France
| | - Paul A Agbaje
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Erin A Henslee
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK.,Department of Engineering, Wake Forest University, 55 Vine St, Wake Downtown, Winston-Salem, NC, 27109, USA
| | - Robert A Dorey
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Rebecca Lewis
- School of Veterinary Medicine, University of Surrey, Guildford, Surrey, GU2 7XH, UK
| | - Fatima H Labeed
- Centre for Biomedical Engineering, University of Surrey, Guildford, Surrey, GU2 7XH, UK
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12
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Ruiz FS, Beijamini F, Beale AD, Gonçalves BDSB, Vartanian D, Taporoski TP, Middleton B, Krieger JE, Vallada H, Arendt J, Pereira AC, Knutson KL, Pedrazzoli M, von Schantz M. Early chronotype with advanced activity rhythms and dim light melatonin onset in a rural population. J Pineal Res 2020; 69:e12675. [PMID: 32598502 PMCID: PMC7508839 DOI: 10.1111/jpi.12675] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 06/11/2020] [Accepted: 06/18/2020] [Indexed: 11/28/2022]
Abstract
Studying communities at different stages of urbanisation and industrialisation can teach us how timing and intensity of light affect the circadian clock under real-life conditions. We have previously described a strong tendency towards morningness in the Baependi Heart Study, located in a small rural town in Brazil. Here, we tested the hypothesis that this morningness tendency is associated with early circadian phase based on objective measurements (as determined by dim light melatonin onset, DLMO, and activity) and light exposure. We also analysed how well the previously collected chronotype questionnaire data were able to predict these DLMO values. The average DLMO observed in 73 participants (40 female) was 20:03 ± 01:21, SD, with an earlier average onset in men (19:38 ± 01:16) than in women (20:24 ± 01:21; P ≤ .01). However, men presented larger phase angle between DLMO and sleep onset time as measured by actigraphy (4.11 hours vs 3.16 hours; P ≤ .01). Correlational analysis indicated associations between light exposure, activity rhythms and DLMO, such that early DLMO was observed in participants with higher exposure to light, higher activity and earlier light exposure. The strongest significant predictor of DLMO was morningness-eveningness questionnaire (MEQ) (beta=-0.35, P ≤ .05), followed by age (beta = -0.47, P ≤ .01). Sex, light exposure and variables derived from the Munich chronotype questionnaire were not significant predictors. Our observations demonstrate that both early sleep patterns and earlier circadian phase have been retained in this small rural town in spite of availability of electrification, in contrast to metropolitan postindustrial areas.
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Affiliation(s)
- Francieli S. Ruiz
- Department of Psychiatry, University of São Paulo School of Medicine, São Paulo, SP, Brazil
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Felipe Beijamini
- Department of Psychiatry, University of São Paulo School of Medicine, São Paulo, SP, Brazil
- Federal University of Fronteira Sul, Realeza, PR, Brazil
| | - Andrew D. Beale
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
| | | | - Daniel Vartanian
- School of Arts, Science, and Humanities, University of São Paulo, São Paulo, Brazil
| | - Tâmara P. Taporoski
- Department of Psychiatry, University of São Paulo School of Medicine, São Paulo, SP, Brazil
- Feinberg School of Medicine, Northwestern University, Chicago, IL, USA
| | | | - José E. Krieger
- Incor, University of São Paulo School of Medicine, São Paulo, SP, Brazil
| | - Homero Vallada
- Department of Psychiatry, University of São Paulo School of Medicine, São Paulo, SP, Brazil
| | - Josephine Arendt
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
| | | | | | - Mario Pedrazzoli
- School of Arts, Science, and Humanities, University of São Paulo, São Paulo, Brazil
| | - Malcolm von Schantz
- Department of Psychiatry, University of São Paulo School of Medicine, São Paulo, SP, Brazil
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
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13
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O' Neill JS, Hoyle NP, Robertson JB, Edgar RS, Beale AD, Peak-Chew SY, Day J, Costa ASH, Frezza C, Causton HC. Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis. Nat Commun 2020; 11:4706. [PMID: 32943618 PMCID: PMC7499178 DOI: 10.1038/s41467-020-18330-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 08/13/2020] [Indexed: 12/17/2022] Open
Abstract
Yeast physiology is temporally regulated, this becomes apparent under nutrient-limited conditions and results in respiratory oscillations (YROs). YROs share features with circadian rhythms and interact with, but are independent of, the cell division cycle. Here, we show that YROs minimise energy expenditure by restricting protein synthesis until sufficient resources are stored, while maintaining osmotic homeostasis and protein quality control. Although nutrient supply is constant, cells sequester and store metabolic resources via increased transport, autophagy and biomolecular condensation. Replete stores trigger increased H+ export which stimulates TORC1 and liberates proteasomes, ribosomes, chaperones and metabolic enzymes from non-membrane bound compartments. This facilitates translational bursting, liquidation of storage carbohydrates, increased ATP turnover, and the export of osmolytes. We propose that dynamic regulation of ion transport and metabolic plasticity are required to maintain osmotic and protein homeostasis during remodelling of eukaryotic proteomes, and that bioenergetic constraints selected for temporal organisation that promotes oscillatory behaviour.
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Affiliation(s)
- John S O' Neill
- MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK.
| | | | | | - Rachel S Edgar
- Molecular Virology, Department of Medicine, Imperial College, London, W2 1NY, UK
| | - Andrew D Beale
- MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK
| | | | - Jason Day
- Department of Earth Sciences, University of Cambridge, Cambridge, CB2 3EQ, UK
| | - Ana S H Costa
- MRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.,Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA
| | - Christian Frezza
- MRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK
| | - Helen C Causton
- Columbia University Medical Center, New York, NY, 10032, USA.
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14
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Beale AD, Kruchek E, Kitcatt SJ, Henslee EA, Parry JS, Braun G, Jabr R, von Schantz M, O’Neill JS, Labeed FH. Casein Kinase 1 Underlies Temperature Compensation of Circadian Rhythms in Human Red Blood Cells. J Biol Rhythms 2019; 34:144-153. [PMID: 30898060 PMCID: PMC6458989 DOI: 10.1177/0748730419836370] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Temperature compensation and period determination by casein kinase 1 (CK1) are conserved features of eukaryotic circadian rhythms, whereas the clock gene transcription factors that facilitate daily gene expression rhythms differ between phylogenetic kingdoms. Human red blood cells (RBCs) exhibit temperature-compensated circadian rhythms, which, because RBCs lack nuclei, must occur in the absence of a circadian transcription-translation feedback loop. We tested whether period determination and temperature compensation are dependent on CKs in RBCs. As with nucleated cell types, broad-spectrum kinase inhibition with staurosporine lengthened the period of the RBC clock at 37°C, with more specific inhibition of CK1 and CK2 also eliciting robust changes in circadian period. Strikingly, inhibition of CK1 abolished temperature compensation and increased the Q10 for the period of oscillation in RBCs, similar to observations in nucleated cells. This indicates that CK1 activity is essential for circadian rhythms irrespective of the presence or absence of clock gene expression cycles.
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Affiliation(s)
- Andrew D. Beale
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
- Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, UK
| | - Emily Kruchek
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Stephen J. Kitcatt
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Erin A. Henslee
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Jack S.W. Parry
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Gabriella Braun
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Rita Jabr
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
| | - Malcolm von Schantz
- Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
| | - John S. O’Neill
- Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, UK
| | - Fatima H. Labeed
- Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, Surrey, UK
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15
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Frøland Steindal IA, Beale AD, Yamamoto Y, Whitmore D. Development of the Astyanax mexicanus circadian clock and non-visual light responses. Dev Biol 2018; 441:345-354. [PMID: 29909064 PMCID: PMC6141809 DOI: 10.1016/j.ydbio.2018.06.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 06/06/2018] [Accepted: 06/13/2018] [Indexed: 12/25/2022]
Abstract
Most animals and plants live on the planet exposed to periods of rhythmic light and dark. As such, they have evolved endogenous circadian clocks to regulate their physiology rhythmically, and non-visual light detection mechanisms to set the clock to the environmental light-dark cycle. In the case of fish, circadian pacemakers are not only present in the majority of tissues and cells, but these tissues are themselves directly light-sensitive, expressing a wide range of opsin photopigments. This broad non-visual light sensitivity exists to set the clock, but also impacts a wide range of fundamental cell biological processes, such as DNA repair regulation. In this context, Astyanax mexicanus is a very intriguing model system with which to explore non-visual light detection and circadian clock function. Previous work has shown that surface fish possess the same directly light entrainable circadian clocks, described above. The same is true for cave strains of Astyanax in the laboratory, though no daily rhythms have been observed under natural dark conditions in Mexico. There are, however, clear alterations in the cave strain light response and changes to the circadian clock, with a difference in phase of peak gene expression and a reduction in amplitude. In this study, we expand these early observations by exploring the development of non-visual light sensitivity and clock function between surface and cave populations. When does the circadian pacemaker begin to oscillate during development, and are there differences between the various strains? Is the difference in acute light sensitivity, seen in adults, apparent from the earliest stages of development? Our results show that both cave and surface populations must experience daily light exposure to establish a larval gene expression rhythm. These oscillations begin early, around the third day of development in all strains, but gene expression rhythms show a significantly higher amplitude in surface fish larvae. In addition, the light induction of clock genes is developmentally delayed in cave populations. Zebrafish embryonic light sensitivity has been shown to be critical not only for clock entrainment, but also for transcriptional activation of DNA repair processes. Similar downstream transcriptional responses to light also occur in Astyanax. Interestingly, the establishment of the adult timing profile of clock gene expression takes several days to become apparent. This fact may provide mechanistic insight into the key differences between the cave and surface fish clock mechanisms. Non-visual light sensitivity is developmentally delayed in cave strains of Astyanax. Neither strains of Astyanax show clock gene oscillations in dark raised larvae. The timing of the circadian molecular clock rhythm is delayed by 6-h in Pachon. Expression CPD photolyase is raised in constant darkness in Pachon. The clock has gained greater regulation over light-responsive genes in cave strains.
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Affiliation(s)
- Inga A Frøland Steindal
- Department of Cell and Developmental Biology, University College London, 21 University Street, London WC1E 6DE, UK
| | - Andrew D Beale
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Yoshiyuki Yamamoto
- Department of Cell and Developmental Biology, University College London, 21 University Street, London WC1E 6DE, UK
| | - David Whitmore
- Department of Cell and Developmental Biology, University College London, 21 University Street, London WC1E 6DE, UK.
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16
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Farrington CP, Beale AD. Computer-aided detection of temporal clusters of organisms reported to the Communicable Disease Surveillance Centre. Commun Dis Rep CDR Rev 1993; 3:R78-82. [PMID: 7693157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
This article describes a computer system developed to assist in the identification of temporal clusters among the several hundred different organisms reported each week to the PHLS Communicable Disease Surveillance Centre. A threshold value is calculated for each organism on the basis of past reports. Organisms in excess of their threshold are identified for further investigation. The calculation of the thresholds allows for past outbreaks, long-term trends, and scatter in the data.
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