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Yuen ELH, Leary AY, Clavel M, Tumtas Y, Mohseni A, Zhao J, Picchianti L, Jamshidiha M, Pandey P, Duggan C, Cota E, Dagdas Y, Bozkurt TO. A RabGAP negatively regulates plant autophagy and immune trafficking. Curr Biol 2024:S0960-9822(24)00442-1. [PMID: 38677281 DOI: 10.1016/j.cub.2024.04.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 03/11/2024] [Accepted: 04/02/2024] [Indexed: 04/29/2024]
Abstract
Plants rely on autophagy and membrane trafficking to tolerate stress, combat infections, and maintain cellular homeostasis. However, the molecular interplay between autophagy and membrane trafficking is poorly understood. Using an AI-assisted approach, we identified Rab3GAP-like (Rab3GAPL) as a key membrane trafficking node that controls plant autophagy negatively. Rab3GAPL suppresses autophagy by binding to ATG8, the core autophagy adaptor, and deactivating Rab8a, a small GTPase essential for autophagosome formation and defense-related secretion. Rab3GAPL reduces autophagic flux in three model plant species, suggesting that its negative regulatory role in autophagy is conserved in land plants. Beyond autophagy regulation, Rab3GAPL modulates focal immunity against the oomycete pathogen Phytophthora infestans by preventing defense-related secretion. Altogether, our results suggest that Rab3GAPL acts as a molecular rheostat to coordinate autophagic flux and defense-related secretion by restraining Rab8a-mediated trafficking. This unprecedented interplay between a RabGAP-Rab pair and ATG8 sheds new light on the intricate membrane transport mechanisms underlying plant autophagy and immunity.
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Affiliation(s)
- Enoch Lok Him Yuen
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Alexandre Y Leary
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Marion Clavel
- Gregor Mendel Institute of Molecular Plant Biology, Vienna BioCenter, Dr. Bohr-Gasse, 1030 Vienna, Austria; Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam, Germany
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Azadeh Mohseni
- Gregor Mendel Institute of Molecular Plant Biology, Vienna BioCenter, Dr. Bohr-Gasse, 1030 Vienna, Austria
| | - Jierui Zhao
- Gregor Mendel Institute of Molecular Plant Biology, Vienna BioCenter, Dr. Bohr-Gasse, 1030 Vienna, Austria
| | - Lorenzo Picchianti
- Gregor Mendel Institute of Molecular Plant Biology, Vienna BioCenter, Dr. Bohr-Gasse, 1030 Vienna, Austria
| | - Mostafa Jamshidiha
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Pooja Pandey
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Cian Duggan
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Ernesto Cota
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK
| | - Yasin Dagdas
- Gregor Mendel Institute of Molecular Plant Biology, Vienna BioCenter, Dr. Bohr-Gasse, 1030 Vienna, Austria.
| | - Tolga O Bozkurt
- Department of Life Sciences, Imperial College London, London SW7 2AZ, UK.
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Duggan C, Hernon O, Dunne R, McInerney V, Walsh SR, Lowery A, McCarthy M, Carr PJ. Vascular access device type for systemic anti-cancer therapies in cancer patients: A scoping review. Crit Rev Oncol Hematol 2024; 196:104277. [PMID: 38492760 DOI: 10.1016/j.critrevonc.2024.104277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/26/2024] [Accepted: 01/26/2024] [Indexed: 03/18/2024] Open
Abstract
BACKGROUND Patients with cancer can expect to receive numerous invasive vascular access procedures for intravenous therapy and clinical diagnostics. Due to the increased incidence and prevalence of cancer globally there will be significantly more people who require first-line intravenous chemotherapy over the next ten years. METHODS Our objective was to determine the types of evidence that exist for the vascular access device (VAD) type for the delivery of systemic anti-cancer therapy (SACT) in cancer patients. We used JBI scoping review methodology to identify the types of VADs used for SACT and with a specific search strategy included articles from 2012-2022 published in the English language. We identify (i) type of VADs used for SACT delivery (ii) the type of insertion and post-insertion complications (iii) the geographical location and clinical environment (iv) and whether VAD choice impacts on quality of life (QOL). Findings were presented using the PAGER framework. MAIN FINDINGS Our search strategy identified 10,390 titles, of these, 5318 duplicates were removed. The remaining 5072 sources were screened for eligibility, 240 articles met the inclusion criteria. The most common design include retrospective study designs (n = 91) followed by prospective study designs (n = 31). We found 28 interventional studies with 21 registered in a clinical trial registry and identified no core outcome sets papers specific to VAD for SACT. The most prevalent publications were those that featured two or more VAD types (n = 70), followed by tunnelled intravenous VADs (n = 67). Of 38 unique complications identified, the most frequent catheter related complication was catheter related thrombosis (n = 178, 74%), followed by infection (n = 170, 71%). The county where the most publications originated from was China (n = 62) with one randomized controlled multicenter study from a comprehensive cancer centre. Of the thirty three studies that included QOL we found 4 which reported on body image. No QOL measurement tools specific to the process of SACT administration via VAD are available INTERPRETATION: Our findings suggest a systematic review and meta-analysis of VAD use for intravenous SACT can be considered. However, the development of a core outcome set for SACT should be prioritised. Funding for high quality programs of research for VAD in cancer are needed. Comprehensive cancer centres should lead this research agenda.
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Affiliation(s)
- C Duggan
- Department of Oncology, Portiuncula Hospital, Ballinasloe, Galway H53 T971, Ireland; School of Nursing and Midwifery, University of Galway, Ireland; Alliance for Vascular Access Teaching and Research (AVATAR) Group, Queensland, Australia.
| | - O Hernon
- School of Nursing and Midwifery, University of Galway, Ireland; Alliance for Vascular Access Teaching and Research (AVATAR) Group, Queensland, Australia
| | - R Dunne
- Library, University of Galway, Ireland
| | - V McInerney
- HRB Clinical Research Facility, University of Galway, Ireland
| | - S R Walsh
- Department of Vascular Surgery, Galway University Hospital, Ireland
| | - A Lowery
- School of Medicine, University of Galway, Ireland
| | - M McCarthy
- Department of Medical Oncology, Galway University Hospital, Ireland
| | - P J Carr
- School of Nursing and Midwifery, University of Galway, Ireland; Alliance for Vascular Access Teaching and Research (AVATAR) Group, Queensland, Australia
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Collins ASP, Kurt H, Duggan C, Cotur Y, Coatsworth P, Naik A, Kaisti M, Bozkurt T, Güder F. Parallel, Continuous Monitoring and Quantification of Programmed Cell Death in Plant Tissue. Adv Sci (Weinh) 2024:e2400225. [PMID: 38531063 DOI: 10.1002/advs.202400225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 03/11/2024] [Indexed: 03/28/2024]
Abstract
Accurate quantification of hypersensitive response (HR) programmed cell death is imperative for understanding plant defense mechanisms and developing disease-resistant crop varieties. Here, a phenotyping platform for rapid, continuous-time, and quantitative assessment of HR is demonstrated: Parallel Automated Spectroscopy Tool for Electrolyte Leakage (PASTEL). Compared to traditional HR assays, PASTEL significantly improves temporal resolution and has high sensitivity, facilitating detection of microscopic levels of cell death. Validation is performed by transiently expressing the effector protein AVRblb2 in transgenic Nicotiana benthamiana (expressing the corresponding resistance protein Rpi-blb2) to reliably induce HR. Detection of cell death is achieved at microscopic intensities, where leaf tissue appears healthy to the naked eye one week after infiltration. PASTEL produces large amounts of frequency domain impedance data captured continuously. This data is used to develop supervised machine-learning (ML) models for classification of HR. Input data (inclusive of the entire tested concentration range) is classified as HR-positive or negative with 84.1% mean accuracy (F1 score = 0.75) at 1 h and with 87.8% mean accuracy (F1 score = 0.81) at 22 h. With PASTEL and the ML models produced in this work, it is possible to phenotype disease resistance in plants in hours instead of days to weeks.
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Affiliation(s)
| | - Hasan Kurt
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Cian Duggan
- Department of Life Sciences, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Yasin Cotur
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Philip Coatsworth
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Atharv Naik
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Matti Kaisti
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
- Department of Computing, University of Turku, Vesilinnantie 5, Turku, 20500, Finland
| | - Tolga Bozkurt
- Department of Life Sciences, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
| | - Firat Güder
- Department of Bioengineering, Royal School of Mines, Imperial College London, London, SW7 2AZ, UK
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Duggan C, Chopra R, Taylor C. Decreasing exposure to thyroid radiation in an orthopaedic theatre setting: an educational intervention. Acta Orthop Belg 2023; 89:679-683. [PMID: 38205760 DOI: 10.52628/89.4.10174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
Abstract
The use of personal protective equipment (PPE) can significantly reduce staff exposure to harmful radiation and infection. Fluoroscopic procedures in orthopaedic theatre can generate high levels of radiation and good adherence to PPE use is essential to reduce long term cancer risk, including thyroid cancer. To assess baseline compliance with PPE, availability of PPE in theatre and carry out an intervention to promote greater use of PPE. This was a closed-loop interventional study set in a level 1 trauma centre and an elective/rehabilitation unit. Data were collected in 40 cases pre and post-intervention from 26th May-7th July 2017. All health care practitioners present at fluoroscopic screening were observed. PPE availability was audited daily. A questionnaire was used to assess surgical and nursing knowledge/practices regarding radiation/infection safety. An educational presentation was delivered to the groups at highest risk of exposure. 39/41 questionnaires were completed (29 surgeons, 10 nurses). 41% of respondents had taken a radiation training course or felt they had adequate training. There was a significant increase in the use of thyroid guards by surgeons 13/115 (11.3%) pre-intervention to 54/117 (46.2%) post-intervention (p<0.001) and radiographers (p=0.019) post-intervention. Logistic regression showed an 89.7% increased likelihood of thyroid guard use post-intervention and a 12.7% increased chance of thyroid guard use for each extra guard available. A short educational, easily replicated session, significantly improved compliance with thyroid guards by orthopaedic surgeons.
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Duggan C, Irvine AD, O'B Hourihane J, Kiely ME, Murray DM. ASQ-3 and BSID-III's concurrent validity and predictive ability of cognitive outcome at 5 years. Pediatr Res 2023; 94:1465-1471. [PMID: 36841883 PMCID: PMC10589087 DOI: 10.1038/s41390-023-02528-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 01/20/2023] [Accepted: 01/28/2023] [Indexed: 02/27/2023]
Abstract
BACKGROUND Early detection of cognitive disability is challenging. We assessed the domain-specific, concurrent validity of the ages and stages questionnaire (ASQ-3) and the Bayley Scales of Infant and Toddler Development (BSID-III), and their ability to predict cognitive delay at school age. METHODS Within a longitudinal birth cohort study, a nested cohort of children was assessed using ASQ-3 and BSID-III at 24 months, and at 5 years using the Kaufmann brief IQ test (KBIT). RESULTS 278 children were assessed using BSID-III and ASQ-3 at 24-months; mean(SD) BW = 3445(506) grams, M:F ratio=52:48. ASQ-3 had reasonable predictive ability (AUROC, p value, sensitivity:specificity) of same domain delay for motor (0.630, p = 0.008, 50%:76.1%) and language (0.623, p = 0.010, 25%:99.5%) at 2 years, but poor ability to detect cognitive delay compared to BSID-III (0.587, p = 0.124, 20.7%/96.8%;). 204/278 children were assessed at 5 years. BSID-III language and cognition domains showed better correlation with verbal and nonverbal IQ (R = 0.435, p < 0.001 and 0.388, p < 0.001 respectively). Both assessments showed high specificity and low sensitivity for predicting delay at 5 years. CONCLUSIONS The ASQ-3 cognitive domain showed poor concurrent validity with BSID-III cognitive score. Both ASQ-3 and BSID-III at 2 years poorly predict cognitive delay at 5 years. IMPACT The ASQ-3 does not adequately detect cognitive delay or predict cognitive delay at 5 years, particularly for children with mild to moderate delay. The ASQ-3 shows reasonable concurrent validity with the motor and language subscales of the BSID-III. Neither early screening nor formal developmental testing demonstrated significant predictive validity to screen for cognitive delay at school age. This article highlights the need to analyse our existing model of using the ASQ-3 to screen for cognitive delay in children aged 2 years.
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Affiliation(s)
- Cian Duggan
- Department of Paediatrics and Child Health, Cork University Hospital, Cork, Ireland.
| | - Alan D Irvine
- Department of Clinical Medicine, Trinity College, Dublin, Ireland
- Department of Paediatric Dermatology, Our Lady's Children's Hospital, Dublin, Ireland
| | - Jonathan O'B Hourihane
- Department of Paediatrics and Child Health, Cork University Hospital, Cork, Ireland
- The INFANT Research Centre, University College Cork, Cork, Ireland
| | - Mairead E Kiely
- The INFANT Research Centre, University College Cork, Cork, Ireland
- University College Cork, Cork Centre for Vitamin D and Nutrition Research, School of Food and Nutritional Sciences, Cork, Ireland
| | - Deirdre M Murray
- Department of Paediatrics and Child Health, Cork University Hospital, Cork, Ireland
- The INFANT Research Centre, University College Cork, Cork, Ireland
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Contreras MP, Pai H, Selvaraj M, Toghani A, Lawson DM, Tumtas Y, Duggan C, Yuen ELH, Stevenson CEM, Harant A, Maqbool A, Wu CH, Bozkurt TO, Kamoun S, Derevnina L. Resurrection of plant disease resistance proteins via helper NLR bioengineering. Sci Adv 2023; 9:eadg3861. [PMID: 37134163 PMCID: PMC10156107 DOI: 10.1126/sciadv.adg3861] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Parasites counteract host immunity by suppressing helper nucleotide binding and leucine-rich repeat (NLR) proteins that function as central nodes in immune receptor networks. Understanding the mechanisms of immunosuppression can lead to strategies for bioengineering disease resistance. Here, we show that a cyst nematode virulence effector binds and inhibits oligomerization of the helper NLR protein NRC2 by physically preventing intramolecular rearrangements required for activation. An amino acid polymorphism at the binding interface between NRC2 and the inhibitor is sufficient for this helper NLR to evade immune suppression, thereby restoring the activity of multiple disease resistance genes. This points to a potential strategy for resurrecting disease resistance in crop genomes.
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Affiliation(s)
| | - Hsuan Pai
- The Sainsbury Laboratory, University of East Anglia, Norwich, UK
| | | | - AmirAli Toghani
- The Sainsbury Laboratory, University of East Anglia, Norwich, UK
| | - David M Lawson
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich, UK
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College, London, UK
| | - Cian Duggan
- Department of Life Sciences, Imperial College, London, UK
| | | | | | - Adeline Harant
- The Sainsbury Laboratory, University of East Anglia, Norwich, UK
| | - Abbas Maqbool
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich, UK
| | - Chih-Hang Wu
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | | | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, Norwich, UK
| | - Lida Derevnina
- The Sainsbury Laboratory, University of East Anglia, Norwich, UK
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Contreras MP, Pai H, Tumtas Y, Duggan C, Yuen ELH, Cruces AV, Kourelis J, Ahn H, Lee K, Wu C, Bozkurt TO, Derevnina L, Kamoun S. Sensor NLR immune proteins activate oligomerization of their NRC helpers in response to plant pathogens. EMBO J 2023; 42:e111519. [PMID: 36579501 PMCID: PMC9975940 DOI: 10.15252/embj.2022111519] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 11/25/2022] [Accepted: 12/02/2022] [Indexed: 12/30/2022] Open
Abstract
Nucleotide-binding domain leucine-rich repeat (NLR) immune receptors are important components of plant and metazoan innate immunity that can function as individual units or as pairs or networks. Upon activation, NLRs form multiprotein complexes termed resistosomes or inflammasomes. Although metazoan paired NLRs, such as NAIP/NLRC4, form hetero-complexes upon activation, the molecular mechanisms underpinning activation of plant paired NLRs, especially whether they associate in resistosome hetero-complexes, is unknown. In asterid plant species, the NLR required for cell death (NRC) immune receptor network is composed of multiple resistance protein sensors and downstream helpers that confer immunity against diverse plant pathogens. Here, we show that pathogen effector-activation of the NLR proteins Rx (confers virus resistance), and Bs2 (confers bacterial resistance) leads to oligomerization of their helper NLR, NRC2. Activated Rx does not oligomerize or enter into a stable complex with the NRC2 oligomer and remains cytoplasmic. In contrast, activated NRC2 oligomers accumulate in membrane-associated puncta. We propose an activation-and-release model for NLRs in the NRC immune receptor network. This points to a distinct activation model compared with mammalian paired NLRs.
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Affiliation(s)
| | - Hsuan Pai
- The Sainsbury LaboratoryUniversity of East AngliaNorwichUK
| | - Yasin Tumtas
- Department of Life SciencesImperial CollegeLondonUK
| | - Cian Duggan
- Department of Life SciencesImperial CollegeLondonUK
| | | | - Angel Vergara Cruces
- The Sainsbury LaboratoryUniversity of East AngliaNorwichUK
- Present address:
John Innes CentreUniversity of East AngliaNorwichUK
| | | | - Hee‐Kyung Ahn
- The Sainsbury LaboratoryUniversity of East AngliaNorwichUK
| | - Kim‐Teng Lee
- Institute of Plant and Microbial BiologyAcademia SinicaTaipeiTaiwan
| | - Chih‐Hang Wu
- Institute of Plant and Microbial BiologyAcademia SinicaTaipeiTaiwan
| | | | - Lida Derevnina
- The Sainsbury LaboratoryUniversity of East AngliaNorwichUK
- Present address:
Department of Plant Sciences, Crop Science CentreUniversity of CambridgeCambridgeUK
| | - Sophien Kamoun
- The Sainsbury LaboratoryUniversity of East AngliaNorwichUK
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Adachi H, Sakai T, Harant A, Pai H, Honda K, Toghani A, Claeys J, Duggan C, Bozkurt TO, Wu CH, Kamoun S. An atypical NLR protein modulates the NRC immune receptor network in Nicotiana benthamiana. PLoS Genet 2023; 19:e1010500. [PMID: 36656829 PMCID: PMC9851556 DOI: 10.1371/journal.pgen.1010500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 10/27/2022] [Indexed: 01/20/2023] Open
Abstract
The NRC immune receptor network has evolved in asterid plants from a pair of linked genes into a genetically dispersed and phylogenetically structured network of sensor and helper NLR (nucleotide-binding domain and leucine-rich repeat-containing) proteins. In some species, such as the model plant Nicotiana benthamiana and other Solanaceae, the NRC (NLR-REQUIRED FOR CELL DEATH) network forms up to half of the NLRome, and NRCs are scattered throughout the genome in gene clusters of varying complexities. Here, we describe NRCX, an atypical member of the NRC family that lacks canonical features of these NLR helper proteins, such as a functional N-terminal MADA motif and the capacity to trigger autoimmunity. In contrast to other NRCs, systemic gene silencing of NRCX in N. benthamiana markedly impairs plant growth resulting in a dwarf phenotype. Remarkably, dwarfism of NRCX silenced plants is partially dependent on NRCX paralogs NRC2 and NRC3, but not NRC4. Despite its negative impact on plant growth when silenced systemically, spot gene silencing of NRCX in mature N. benthamiana leaves doesn't result in visible cell death phenotypes. However, alteration of NRCX expression modulates the hypersensitive response mediated by NRC2 and NRC3 in a manner consistent with a negative role for NRCX in the NRC network. We conclude that NRCX is an atypical member of the NRC network that has evolved to contribute to the homeostasis of this genetically unlinked NLR network.
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Affiliation(s)
- Hiroaki Adachi
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom,Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kyoto, Japan,JST-PRESTO, Saitama, Japan,* E-mail: (HA); (CHW); (SK)
| | - Toshiyuki Sakai
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom,Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Adeline Harant
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Hsuan Pai
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Kodai Honda
- Laboratory of Crop Evolution, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - AmirAli Toghani
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Jules Claeys
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Cian Duggan
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Tolga O. Bozkurt
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Chih-hang Wu
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom,Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan,* E-mail: (HA); (CHW); (SK)
| | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, United Kingdom,* E-mail: (HA); (CHW); (SK)
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Gahan Y, Hunt P, Duggan C, Geraghty K, Murphy R. CN47 Future-proofing the Irish Association for Nurses in Oncology: Identifying the professional and educational needs of members. Ann Oncol 2022. [DOI: 10.1016/j.annonc.2022.07.372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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10
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Yun JP, McNicholas P, O'Connell C, Murray A, Duggan C, Curry L, Fahey L, Watterson D. The VACS Opinion Study: Vaccine Attitudes and COVID-19 Safety. Ir Med J 2022; 115:638. [PMID: 36301221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Affiliation(s)
- J P Yun
- School of Medicine, National University of Ireland, Galway
| | - P McNicholas
- School of Medicine, National University of Ireland, Galway
| | - C O'Connell
- School of Medicine, National University of Ireland, Galway
| | - A Murray
- School of Medicine, National University of Ireland, Galway
| | - C Duggan
- School of Medicine, National University of Ireland, Galway
| | - L Curry
- School of Medicine, National University of Ireland, Galway
| | - L Fahey
- School of Medicine, National University of Ireland, Galway
| | - D Watterson
- School of Medicine, National University of Ireland, Galway
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Savage Z, Duggan C, Toufexi A, Pandey P, Liang Y, Segretin ME, Yuen LH, Gaboriau DCA, Leary AY, Tumtas Y, Khandare V, Ward AD, Botchway SW, Bateman BC, Pan I, Schattat M, Sparkes I, Bozkurt TO. Chloroplasts alter their morphology and accumulate at the pathogen interface during infection by Phytophthora infestans. Plant J 2021; 107:1771-1787. [PMID: 34250673 DOI: 10.1111/tpj.15416] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 07/02/2021] [Accepted: 07/08/2021] [Indexed: 05/22/2023]
Abstract
Upon immune activation, chloroplasts switch off photosynthesis, produce antimicrobial compounds and associate with the nucleus through tubular extensions called stromules. Although it is well established that chloroplasts alter their position in response to light, little is known about the dynamics of chloroplast movement in response to pathogen attack. Here, we report that during infection with the Irish potato famine pathogen Phytophthora infestans, chloroplasts accumulate at the pathogen interface, associating with the specialized membrane that engulfs the pathogen haustorium. The chemical inhibition of actin polymerization reduces the accumulation of chloroplasts at pathogen haustoria, suggesting that this process is partially dependent on the actin cytoskeleton. However, chloroplast accumulation at haustoria does not necessarily rely on movement of the nucleus to this interface and is not affected by light conditions. Stromules are typically induced during infection, embracing haustoria and facilitating chloroplast interactions, to form dynamic organelle clusters. We found that infection-triggered stromule formation relies on BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1 (BAK1)-mediated surface immune signaling, whereas chloroplast repositioning towards haustoria does not. Consistent with the defense-related induction of stromules, effector-mediated suppression of BAK1-mediated immune signaling reduced stromule formation during infection. On the other hand, immune recognition of the same effector stimulated stromules, presumably via a different pathway. These findings implicate chloroplasts in a polarized response upon pathogen attack and point to more complex functions of these organelles in plant-pathogen interactions.
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Affiliation(s)
- Zachary Savage
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Cian Duggan
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Alexia Toufexi
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Pooja Pandey
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Yuxi Liang
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - María Eugenia Segretin
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular 'Dr Héctor N. Torres' (INGEBI)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Vuelta de Obligado 2490, Ciudad Autónoma de Buenos Aires, C1428ADN, Argentina
| | - Lok Him Yuen
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - David C A Gaboriau
- Facility for Imaging by Light Microscopy, Faculty of Medicine, National Heart & Lung Institute (NHLI), Imperial College London, South Kensington, SAF building, London, SW7 2AZ, UK
| | - Alexandre Y Leary
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Virendrasinh Khandare
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
| | - Andrew D Ward
- Central Laser Facility, Science and Technology Facilities Council Harwell, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell, Didcot, OX11 0QX, UK
| | - Stanley W Botchway
- Central Laser Facility, Science and Technology Facilities Council Harwell, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell, Didcot, OX11 0QX, UK
| | - Benji C Bateman
- Central Laser Facility, Science and Technology Facilities Council Harwell, Science and Technology Facilities Council, Rutherford Appleton Laboratory, Harwell, Didcot, OX11 0QX, UK
| | - Indranil Pan
- Centre for Process Systems Engineering and Centre for Environmental Policy, Imperial College London, South Kensington Campus, London, London, SW7 2AZ, UK
- The Alan Turing Institute, British Library, 96 Euston Road, London, London, NW1 2DB, UK
| | - Martin Schattat
- Martin Luther Universität Halle-Wittenberg, Halle, 06108 Halle, Germany
| | - Imogen Sparkes
- School of Biological Sciences, University of Bristol, University of Bristol, St Michael's Hill, Bristol, BS8 8DZ, UK
| | - Tolga O Bozkurt
- Department of Life Sciences, Imperial College London, Imperial College Road, South Kensington Campus, London, London, SW7 2AZ, UK
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12
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Duggan C, Moratto E, Savage Z, Hamilton E, Adachi H, Wu CH, Leary AY, Tumtas Y, Rothery SM, Maqbool A, Nohut S, Martin TR, Kamoun S, Bozkurt TO. Dynamic localization of a helper NLR at the plant-pathogen interface underpins pathogen recognition. Proc Natl Acad Sci U S A 2021; 118:e2104997118. [PMID: 34417294 PMCID: PMC8403872 DOI: 10.1073/pnas.2104997118] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Plants employ sensor-helper pairs of NLR immune receptors to recognize pathogen effectors and activate immune responses. Yet, the subcellular localization of NLRs pre- and postactivation during pathogen infection remains poorly understood. Here, we show that NRC4, from the "NRC" solanaceous helper NLR family, undergoes dynamic changes in subcellular localization by shuttling to and from the plant-pathogen haustorium interface established during infection by the Irish potato famine pathogen Phytophthora infestans. Specifically, prior to activation, NRC4 accumulates at the extrahaustorial membrane (EHM), presumably to mediate response to perihaustorial effectors that are recognized by NRC4-dependent sensor NLRs. However, not all NLRs accumulate at the EHM, as the closely related helper NRC2 and the distantly related ZAR1 did not accumulate at the EHM. NRC4 required an intact N-terminal coiled-coil domain to accumulate at the EHM, whereas the functionally conserved MADA motif implicated in cell death activation and membrane insertion was dispensable for this process. Strikingly, a constitutively autoactive NRC4 mutant did not accumulate at the EHM and showed punctate distribution that mainly associated with the plasma membrane, suggesting that postactivation, NRC4 may undergo a conformation switch to form clusters that do not preferentially associate with the EHM. When NRC4 is activated by a sensor NLR during infection, however, NRC4 forms puncta mainly at the EHM and, to a lesser extent, at the plasma membrane. We conclude that following activation at the EHM, NRC4 may spread to other cellular membranes from its primary site of activation to trigger immune responses.
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Affiliation(s)
- Cian Duggan
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Eleonora Moratto
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Zachary Savage
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Eranthika Hamilton
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Hiroaki Adachi
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630-0192, Japan
| | - Chih-Hang Wu
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan
| | - Alexandre Y Leary
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Stephen M Rothery
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Abbas Maqbool
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
| | - Seda Nohut
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Toby Ross Martin
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom
| | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
| | - Tolga Osman Bozkurt
- Department of Life Sciences, Imperial College, SW7 2AZ London, United Kingdom;
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13
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Pandey P, Leary AY, Tumtas Y, Savage Z, Dagvadorj B, Duggan C, Yuen EL, Sanguankiattichai N, Tan E, Khandare V, Connerton AJ, Yunusov T, Madalinski M, Mirkin FG, Schornack S, Dagdas Y, Kamoun S, Bozkurt TO. An oomycete effector subverts host vesicle trafficking to channel starvation-induced autophagy to the pathogen interface. eLife 2021; 10:65285. [PMID: 34424198 PMCID: PMC8382295 DOI: 10.7554/elife.65285] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Accepted: 07/20/2021] [Indexed: 12/14/2022] Open
Abstract
Eukaryotic cells deploy autophagy to eliminate invading microbes. In turn, pathogens have evolved effector proteins to counteract antimicrobial autophagy. How adapted pathogens co-opt autophagy for their own benefit is poorly understood. The Irish famine pathogen Phytophthora infestans secretes the effector protein PexRD54 that selectively activates an unknown plant autophagy pathway that antagonizes antimicrobial autophagy at the pathogen interface. Here, we show that PexRD54 induces autophagosome formation by bridging vesicles decorated by the small GTPase Rab8a with autophagic compartments labeled by the core autophagy protein ATG8CL. Rab8a is required for pathogen-triggered and starvation-induced but not antimicrobial autophagy, revealing specific trafficking pathways underpin selective autophagy. By subverting Rab8a-mediated vesicle trafficking, PexRD54 utilizes lipid droplets to facilitate biogenesis of autophagosomes diverted to pathogen feeding sites. Altogether, we show that PexRD54 mimics starvation-induced autophagy to subvert endomembrane trafficking at the host-pathogen interface, revealing how effectors bridge distinct host compartments to expedite colonization. With its long filaments reaching deep inside its prey, the tiny fungi-like organism known as Phytophthora infestans has had a disproportionate impact on human history. Latching onto plants and feeding on their cells, it has caused large-scale starvation events such as the Irish or Highland potato famines. Many specialized proteins allow the parasite to accomplish its feat. For instance, PexRD54 helps P. infestans hijack a cellular process known as autophagy. Healthy cells use this ‘self-eating’ mechanism to break down invaders or to recycle their components, for example when they require specific nutrients. The process is set in motion by various pathways of molecular events that result in specific sac-like ‘vesicles’ filled with cargo being transported to specialized compartments for recycling. PexRD54 can take over this mechanism by activating one of the plant autophagy pathways, directing cells to form autophagic vesicles that Phytophthora could then possibly use to feed on or to destroy antimicrobial components. How or why this is the case remains poorly understood. To examine these questions, Pandey, Leary et al. used a combination of genetic and microscopy techniques and tracked how PexRD54 alters autophagy as P. infestans infects a tobacco-related plant. The results show that PexRD54 works by bridging two proteins: one is present on cellular vesicles filled with cargo, and the other on autophagic structures surrounding the parasite. This allows PexRD54 to direct the vesicles to the feeding sites of P. infestans so the parasite can potentially divert nutrients. Pandey, Leary et al. then went on to develop a molecule called the AIM peptide, which could block autophagy by mimicking part of PexRD54. These results help to better grasp how a key disease affects crops, potentially leading to new ways to protect plants without the use of pesticides. They also shed light on autophagy: ultimately, a deeper understanding of this fundamental biological process could allow the development of plants which can adapt to changing environments.
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Affiliation(s)
| | | | | | | | | | - Cian Duggan
- Imperial College London, London, United Kingdom
| | | | | | - Emily Tan
- Imperial College London, London, United Kingdom
| | | | | | - Temur Yunusov
- Sainsbury Laboratory Cambridge University (SLCU), Cambridge, United Kingdom
| | - Mathias Madalinski
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria
| | - Federico Gabriel Mirkin
- Imperial College London, London, United Kingdom.,Sainsbury Laboratory Cambridge University (SLCU), Cambridge, United Kingdom.,Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria.,INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | | | - Yasin Dagdas
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria
| | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, Norwich, United Kingdom
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14
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Pandey P, Leary AY, Tumtas Y, Savage Z, Dagvadorj B, Duggan C, Yuen EL, Sanguankiattichai N, Tan E, Khandare V, Connerton AJ, Yunusov T, Madalinski M, Mirkin FG, Schornack S, Dagdas Y, Kamoun S, Bozkurt TO. An oomycete effector subverts host vesicle trafficking to channel starvation-induced autophagy to the pathogen interface. eLife 2021; 10:65285. [PMID: 34424198 DOI: 10.1101/2020.03.20.000117] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Accepted: 07/20/2021] [Indexed: 05/26/2023] Open
Abstract
Eukaryotic cells deploy autophagy to eliminate invading microbes. In turn, pathogens have evolved effector proteins to counteract antimicrobial autophagy. How adapted pathogens co-opt autophagy for their own benefit is poorly understood. The Irish famine pathogen Phytophthora infestans secretes the effector protein PexRD54 that selectively activates an unknown plant autophagy pathway that antagonizes antimicrobial autophagy at the pathogen interface. Here, we show that PexRD54 induces autophagosome formation by bridging vesicles decorated by the small GTPase Rab8a with autophagic compartments labeled by the core autophagy protein ATG8CL. Rab8a is required for pathogen-triggered and starvation-induced but not antimicrobial autophagy, revealing specific trafficking pathways underpin selective autophagy. By subverting Rab8a-mediated vesicle trafficking, PexRD54 utilizes lipid droplets to facilitate biogenesis of autophagosomes diverted to pathogen feeding sites. Altogether, we show that PexRD54 mimics starvation-induced autophagy to subvert endomembrane trafficking at the host-pathogen interface, revealing how effectors bridge distinct host compartments to expedite colonization.
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Affiliation(s)
| | | | | | | | | | - Cian Duggan
- Imperial College London, London, United Kingdom
| | | | | | - Emily Tan
- Imperial College London, London, United Kingdom
| | | | | | - Temur Yunusov
- Sainsbury Laboratory Cambridge University (SLCU), Cambridge, United Kingdom
| | - Mathias Madalinski
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria
| | - Federico Gabriel Mirkin
- Imperial College London, London, United Kingdom
- Sainsbury Laboratory Cambridge University (SLCU), Cambridge, United Kingdom
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria
- INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | | | - Yasin Dagdas
- Gregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria
| | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, Norwich, United Kingdom
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15
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Gao C, Xu H, Huang J, Sun B, Zhang F, Savage Z, Duggan C, Yan T, Wu CH, Wang Y, Vleeshouwers VGAA, Kamoun S, Bozkurt TO, Dong S. Pathogen manipulation of chloroplast function triggers a light-dependent immune recognition. Proc Natl Acad Sci U S A 2020; 117:9613-9620. [PMID: 32284406 PMCID: PMC7196767 DOI: 10.1073/pnas.2002759117] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
In plants and animals, nucleotide-binding leucine-rich repeat (NLR) proteins are intracellular immune sensors that recognize and eliminate a wide range of invading pathogens. NLR-mediated immunity is known to be modulated by environmental factors. However, how pathogen recognition by NLRs is influenced by environmental factors such as light remains unclear. Here, we show that the agronomically important NLR Rpi-vnt1.1 requires light to confer disease resistance against races of the Irish potato famine pathogen Phytophthora infestans that secrete the effector protein AVRvnt1. The activation of Rpi-vnt1.1 requires a nuclear-encoded chloroplast protein, glycerate 3-kinase (GLYK), implicated in energy production. The pathogen effector AVRvnt1 binds the full-length chloroplast-targeted GLYK isoform leading to activation of Rpi-vnt1.1. In the dark, Rpi-vnt1.1-mediated resistance is compromised because plants produce a shorter GLYK-lacking the intact chloroplast transit peptide-that is not bound by AVRvnt1. The transition between full-length and shorter plant GLYK transcripts is controlled by a light-dependent alternative promoter selection mechanism. In plants that lack Rpi-vnt1.1, the presence of AVRvnt1 reduces GLYK accumulation in chloroplasts counteracting GLYK contribution to basal immunity. Our findings revealed that pathogen manipulation of chloroplast functions has resulted in a light-dependent immune response.
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Affiliation(s)
- Chuyun Gao
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Huawei Xu
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Jie Huang
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Biying Sun
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Fan Zhang
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Zachary Savage
- Imperial College, South Kensington Campus, SW7 2AZ London, United Kingdom
| | - Cian Duggan
- Imperial College, South Kensington Campus, SW7 2AZ London, United Kingdom
| | - Tingxiu Yan
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
| | - Chih-Hang Wu
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
| | - Yuanchao Wang
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, China
| | - Vivianne G A A Vleeshouwers
- Wageningen University and Research Plant Breeding, Wageningen University and Research, Wageningen 6708 PB, The Netherlands
| | - Sophien Kamoun
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
| | - Tolga O Bozkurt
- Imperial College, South Kensington Campus, SW7 2AZ London, United Kingdom
| | - Suomeng Dong
- College of Plant Protection, Nanjing Agricultural University, 210095 Nanjing, China;
- The Sainsbury Laboratory, University of East Anglia, NR4 7UH Norwich, United Kingdom
- Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095 Nanjing, China
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16
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Adachi H, Contreras MP, Harant A, Wu CH, Derevnina L, Sakai T, Duggan C, Moratto E, Bozkurt TO, Maqbool A, Win J, Kamoun S. An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species. eLife 2019; 8:e49956. [PMID: 31774397 PMCID: PMC6944444 DOI: 10.7554/elife.49956] [Citation(s) in RCA: 119] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 11/23/2019] [Indexed: 12/19/2022] Open
Abstract
The molecular codes underpinning the functions of plant NLR immune receptors are poorly understood. We used in vitro Mu transposition to generate a random truncation library and identify the minimal functional region of NLRs. We applied this method to NRC4-a helper NLR that functions with multiple sensor NLRs within a Solanaceae receptor network. This revealed that the NRC4 N-terminal 29 amino acids are sufficient to induce hypersensitive cell death. This region is defined by the consensus MADAxVSFxVxKLxxLLxxEx (MADA motif) that is conserved at the N-termini of NRC family proteins and ~20% of coiled-coil (CC)-type plant NLRs. The MADA motif matches the N-terminal α1 helix of Arabidopsis NLR protein ZAR1, which undergoes a conformational switch during resistosome activation. Immunoassays revealed that the MADA motif is functionally conserved across NLRs from distantly related plant species. NRC-dependent sensor NLRs lack MADA sequences indicating that this motif has degenerated in sensor NLRs over evolutionary time.
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Affiliation(s)
- Hiroaki Adachi
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Mauricio P Contreras
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Adeline Harant
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Chih-hang Wu
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Lida Derevnina
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Toshiyuki Sakai
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Cian Duggan
- Department of Life SciencesImperial College LondonLondonUnited Kingdom
| | - Eleonora Moratto
- Department of Life SciencesImperial College LondonLondonUnited Kingdom
| | - Tolga O Bozkurt
- Department of Life SciencesImperial College LondonLondonUnited Kingdom
| | - Abbas Maqbool
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Joe Win
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
| | - Sophien Kamoun
- The Sainsbury LaboratoryUniversity of East Anglia, Norwich Research ParkNorwichUnited Kingdom
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17
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Cruz-Jiménez L, Torres-Mejía G, Mohar-Betancourt A, Campero L, Ángeles-Llerenas A, Ortega-Olvera C, Martínez-Matsushita L, Reynoso-Noverón N, Duggan C, Anderson BO. Factors associated with ever use of mammography in a limited resource setting. A mixed methods study. Int J Qual Health Care 2018; 30:520-529. [PMID: 29648641 DOI: 10.1093/intqhc/mzy053] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 03/01/2018] [Indexed: 12/31/2022] Open
Abstract
Objective To evaluate facilitators and barriers influencing mammography screening participation among women. Design Mixed methods study. Setting Three hospital catchment areas in Hidalgo, Mexico. Participants Four hundred and fifty-five women aged 40-69 years. Intervention Three hundred and eighty women completed a survey about knowledge, beliefs and perceptions about breast cancer screening, and 75 women participated in semi-structured, in-person interviews. Survey data were analyzed using logistic regression; semi-structured interviews were transcribed and analyzed using elements of the grounded theory method. Main Outcome Measure Women were categorized as never having had mammography or having had at least one mammogram in the past. Results From survey data, having had a Pap in the past year was associated with ever having had breast screening (odds ratio = 2.15; 95% confidence interval 1.30-3.54). Compared with never-screened women, ever-screened women had better knowledge of Mexican recommendations for the frequency of mammography screening (49.5% vs 31.7% P < 0.001). A higher percentage of never-screened women perceived that a mammography was a painful procedure (44.5% vs 33.8%; P < 0.001) and feared receiving bad news (38.4% vs 22.2%; P < 0.001) compared with ever-screened women. Women who participated in semi-structured, in-person interviews expressed a lack of knowledge about Mexican standard mammographic screening recommendations for age for starting mammography and its recommended frequency. Women insured under the 'Opportunities' health insurance program said that they are referred to receive Pap tests and mammography. Conclusions Local strategies to reduce mammogram-related pain and fear of bad news should work in tandem with national programs to increase access to screening.
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Affiliation(s)
- L Cruz-Jiménez
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - G Torres-Mejía
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - A Mohar-Betancourt
- Unidad de Epidemiología, Instituto Nacional de Cancerología, Mexico City, Mexico
| | - L Campero
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - A Ángeles-Llerenas
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - C Ortega-Olvera
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - L Martínez-Matsushita
- Centro de Investigación en Salud Poblacional, Instituto Nacional de Salud Pública, Cuernavaca, Morelos, Mexico
| | - N Reynoso-Noverón
- Unidad de Epidemiología, Instituto Nacional de Cancerología, Mexico City, Mexico
| | - C Duggan
- The Breast Health Global Initiative, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.,Public Health Sciences, Fred Hutchinson Cancer Research Center, WA, USA
| | - B O Anderson
- The Breast Health Global Initiative, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.,Public Health Sciences, Fred Hutchinson Cancer Research Center, WA, USA
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18
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Courtenay M, Lim R, Castro-Sanchez E, Deslandes R, Hodson K, Morris G, Reeves S, Weiss M, Ashiru-Oredope D, Bain H, Black A, Bosanquet J, Cockburn A, Duggan C, Fitzpatrick M, Gallagher R, Grant D, McEwen J, Reid N, Sneddon J, Stewart D, Tonna A, White P. Development of consensus-based national antimicrobial stewardship competencies for UK undergraduate healthcare professional education. J Hosp Infect 2018; 100:245-256. [PMID: 29966757 DOI: 10.1016/j.jhin.2018.06.022] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Accepted: 06/25/2018] [Indexed: 01/08/2023]
Abstract
BACKGROUND Healthcare professionals are involved in an array of patient- and medicine-related stewardship activities, for which an understanding and engagement with antimicrobial stewardship (AMS) is important. Undergraduate education provides an ideal opportunity to prepare healthcare professionals for these roles and activities. AIM To provide UK national consensus on a common set of antimicrobial stewardship competencies appropriate for undergraduate healthcare professional education. METHODS A modified Delphi approach comprising two online surveys delivered to a UK national panel of 21 individuals reflecting expertise in prescribing and medicines management with regards to the education and practice of nurses and midwives, pharmacists, physiotherapists, and podiatrists; and antimicrobial prescribing and stewardship. Data collection took place between October and December 2017. FINDINGS A total of 21 participants agreed to become members of the expert panel, of whom 19 (90%) completed round 1 questionnaire, and 17 (89%) completed round 2. Panelists reached a consensus, with consistently high levels of agreement reached, on six overarching competency statements (subdivided into six domains), and 55 individual descriptors essential for antimicrobial stewardship by healthcare professionals. CONCLUSION Due to the consistently high levels of agreement reached on competency statements and their associated descriptors, this competency framework should be used to direct education for undergraduate healthcare professionals, and those working in new clinical roles to support healthcare delivery where an understanding of, and engagement with, AMS is important. Although the competencies target basic education, they can also be used for continuing education.
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Affiliation(s)
- M Courtenay
- School of Health Sciences, Cardiff University, Cardiff, UK.
| | - R Lim
- Reading School of Pharmacy, Reading University, Reading, UK
| | - E Castro-Sanchez
- NIHR Health Protection Unit in Healthcare Associated Infection and Antimicrobial Resistance, Imperial College London, London, UK
| | - R Deslandes
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University, Cardiff, UK
| | - K Hodson
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University, Cardiff, UK
| | - G Morris
- School of Health Sciences, Cardiff University, Cardiff, UK; Hywel Dda University Health Board, Carmarthen, UK
| | - S Reeves
- Faculty of Health, Social Care and Education, Kingston & St George's, University of London, London, UK
| | - M Weiss
- School of Pharmacy and Pharmaceutical Sciences, Cardiff University, Cardiff, UK
| | - D Ashiru-Oredope
- Antimicrobial Resistance Programme Public Health England, London, UK
| | - H Bain
- School of Nursing and Midwifery, Robert Gordon University, Aberdeen, UK
| | - A Black
- Faculty of Nursing, Midwifery and Palliative Care, King's College London, London, UK
| | - J Bosanquet
- Antimicrobial Resistance Programme Public Health England, London, UK
| | - A Cockburn
- Regional Infectious Diseases Unit, Western General Hospital, Edinburgh, UK
| | - C Duggan
- Royal Pharmaceutical Society, London, UK
| | | | | | - D Grant
- Reading School of Pharmacy, Reading University, Reading, UK
| | | | - N Reid
- Public Health Wales, Cardiff, UK
| | - J Sneddon
- Healthcare Improvement Scotland, Glasgow, UK
| | - D Stewart
- School of Pharmacy and Life Sciences, Robert Gordon University, Aberdeen, UK
| | - A Tonna
- School of Pharmacy and Life Sciences, Robert Gordon University, Aberdeen, UK
| | - P White
- Chartered Society of Physiotherapy, London, UK
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19
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Dagdas YF, Pandey P, Tumtas Y, Sanguankiattichai N, Belhaj K, Duggan C, Leary AY, Segretin ME, Contreras MP, Savage Z, Khandare VS, Kamoun S, Bozkurt TO. Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. eLife 2018; 7:37476. [PMID: 29932422 PMCID: PMC6029844 DOI: 10.7554/elife.37476] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 06/21/2018] [Indexed: 12/22/2022] Open
Abstract
During plant cell invasion, the oomycete Phytophthora infestans remains enveloped by host-derived membranes whose functional properties are poorly understood. P. infestans secretes a myriad of effector proteins through these interfaces for plant colonization. Recently we showed that the effector protein PexRD54 reprograms host-selective autophagy by antagonising antimicrobial-autophagy receptor Joka2/NBR1 for ATG8CL binding (Dagdas et al., 2016). Here, we show that during infection, ATG8CL/Joka2 labelled defense-related autophagosomes are diverted toward the perimicrobial host membrane to restrict pathogen growth. PexRD54 also localizes to autophagosomes across the perimicrobial membrane, consistent with the view that the pathogen remodels host-microbe interface by co-opting the host autophagy machinery. Furthermore, we show that the host-pathogen interface is a hotspot for autophagosome biogenesis. Notably, overexpression of the early autophagosome biogenesis protein ATG9 enhances plant immunity. Our results implicate selective autophagy in polarized immune responses of plants and point to more complex functions for autophagy than the widely known degradative roles.
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Affiliation(s)
- Yasin F Dagdas
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom.,The Gregor Mendel Institute of Molecular Plant Biology, Vienna Biocenter, Vienna, Austria
| | - Pooja Pandey
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | | | - Khaoula Belhaj
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
| | - Cian Duggan
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Alexandre Y Leary
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Maria E Segretin
- INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | - Mauricio P Contreras
- Department of Life Sciences, Imperial College London, London, United Kingdom.,INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | - Zachary Savage
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | | | - Sophien Kamoun
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
| | - Tolga O Bozkurt
- Department of Life Sciences, Imperial College London, London, United Kingdom
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20
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Dagdas YF, Pandey P, Tumtas Y, Sanguankiattichai N, Belhaj K, Duggan C, Leary AY, Segretin ME, Contreras MP, Savage Z, Khandare VS, Kamoun S, Bozkurt TO. Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. eLife 2018; 7:37476. [PMID: 29932422 DOI: 10.7554/elife.37476.021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 06/21/2018] [Indexed: 05/27/2023] Open
Abstract
During plant cell invasion, the oomycete Phytophthora infestans remains enveloped by host-derived membranes whose functional properties are poorly understood. P. infestans secretes a myriad of effector proteins through these interfaces for plant colonization. Recently we showed that the effector protein PexRD54 reprograms host-selective autophagy by antagonising antimicrobial-autophagy receptor Joka2/NBR1 for ATG8CL binding (Dagdas et al., 2016). Here, we show that during infection, ATG8CL/Joka2 labelled defense-related autophagosomes are diverted toward the perimicrobial host membrane to restrict pathogen growth. PexRD54 also localizes to autophagosomes across the perimicrobial membrane, consistent with the view that the pathogen remodels host-microbe interface by co-opting the host autophagy machinery. Furthermore, we show that the host-pathogen interface is a hotspot for autophagosome biogenesis. Notably, overexpression of the early autophagosome biogenesis protein ATG9 enhances plant immunity. Our results implicate selective autophagy in polarized immune responses of plants and point to more complex functions for autophagy than the widely known degradative roles.
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Affiliation(s)
- Yasin F Dagdas
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
- The Gregor Mendel Institute of Molecular Plant Biology, Vienna Biocenter, Vienna, Austria
| | - Pooja Pandey
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Yasin Tumtas
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | | | - Khaoula Belhaj
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
| | - Cian Duggan
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Alexandre Y Leary
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | - Maria E Segretin
- INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | - Mauricio P Contreras
- Department of Life Sciences, Imperial College London, London, United Kingdom
- INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
| | - Zachary Savage
- Department of Life Sciences, Imperial College London, London, United Kingdom
| | | | - Sophien Kamoun
- The Sainsbury Laboratory, Norwich Research Park, Norwich, United Kingdom
| | - Tolga O Bozkurt
- Department of Life Sciences, Imperial College London, London, United Kingdom
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21
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Leary AY, Sanguankiattichai N, Duggan C, Tumtas Y, Pandey P, Segretin ME, Salguero Linares J, Savage ZD, Yow RJ, Bozkurt TO. Modulation of plant autophagy during pathogen attack. J Exp Bot 2018; 69:1325-1333. [PMID: 29294077 DOI: 10.1093/jxb/erx425] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In plants, the highly conserved catabolic process of autophagy has long been known as a means of maintaining cellular homeostasis and coping with abiotic stress conditions. Accumulating evidence has linked autophagy to immunity against invading pathogens, regulating plant cell death, and antimicrobial defences. In turn, it appears that phytopathogens have evolved ways not only to evade autophagic clearance but also to modulate and co-opt autophagy for their own benefit. In this review, we summarize and discuss the emerging discoveries concerning how pathogens modulate both host and self-autophagy machineries to colonize their host plants, delving into the arms race that determines the fate of interorganismal interaction.
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22
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Dagvadorj B, Ozketen AC, Andac A, Duggan C, Bozkurt TO, Akkaya MS. A Puccinia striiformis f. sp. tritici secreted protein activates plant immunity at the cell surface. Sci Rep 2017; 7:1141. [PMID: 28442716 PMCID: PMC5430700 DOI: 10.1038/s41598-017-01100-z] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Accepted: 03/24/2017] [Indexed: 01/02/2023] Open
Abstract
Pathogens secrete effector proteins to suppress host immunity, mediate nutrient uptake and subsequently enable parasitism. However, on non-adapted hosts, effectors can be detected as non-self by host immune receptors and activate non-host immunity. Nevertheless, the molecular mechanisms of effector triggered non-host resistance remain unknown. Here, we report that a small cysteine-rich protein PstSCR1 from the wheat rust pathogen Puccinia striiformis f. sp. tritici (Pst) activates immunity in the non-host solanaceous model plant Nicotiana benthamiana. PstSCR1 homologs were found to be conserved in Pst, and in its closest relatives, Puccinia graminis f. sp. tritici and Puccinia triticina. When PstSCR1 was expressed in N. benthamiana with its signal peptide, it provoked the plant immune system, whereas no stimulation was observed when it was expressed without its signal peptide. PstSCR1 expression in N. benthamiana significantly reduced infection capacity of the oomycete pathogens. Moreover, apoplast-targeted PstSCR1 triggered plant cell death in a dose dependent manner. However, in Brassinosteroid insensitive 1-Associated Kinase 1 (SERK3/BAK1) silenced N. benthamiana, cell death was remarkably decreased. Finally, purified PstSCR1 protein activated defence related gene expression in N. benthamiana. Our results show that a Pst-secreted protein, PstSCR1 can activate surface mediated immunity in non-adapted hosts and contribute to non-host resistance.
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Affiliation(s)
- Bayantes Dagvadorj
- Middle East Technical University, Biotechnology Program, Department of Chemistry, Dumlupinar Blvd., Cankaya, Ankara, TR-06800, Turkey
| | - Ahmet Caglar Ozketen
- Middle East Technical University, Biotechnology Program, Department of Chemistry, Dumlupinar Blvd., Cankaya, Ankara, TR-06800, Turkey
| | - Ayse Andac
- Middle East Technical University, Biotechnology Program, Department of Chemistry, Dumlupinar Blvd., Cankaya, Ankara, TR-06800, Turkey
| | - Cian Duggan
- Imperial College London, Department of Life Sciences, London, SW7 2AZ, UK
| | | | - Mahinur S Akkaya
- Middle East Technical University, Biotechnology Program, Department of Chemistry, Dumlupinar Blvd., Cankaya, Ankara, TR-06800, Turkey.
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23
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Finkelstein JL, Kurpad AV, Thomas T, Srinivasan K, Duggan C. Vitamin B 12 status in pregnant women and their infants in South India. Eur J Clin Nutr 2017; 71:1046-1053. [PMID: 28402324 DOI: 10.1038/ejcn.2017.29] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Revised: 11/19/2016] [Accepted: 02/14/2017] [Indexed: 12/29/2022]
Abstract
BACKGROUND/OBJECTIVES Vitamin B12 deficiency during pregnancy has been associated with increased risk of adverse perinatal outcomes. However, few studies have investigated the burden and determinants of vitamin B12 status in young infants. This study was conducted to determine the associations between maternal and infant vitamin B12 status. SUBJECTS/METHODS Pregnant women participating in a vitamin B12 supplementation trial in Bangalore, India, were randomized to receive vitamin B12 (50 μg) or placebo supplementation daily during pregnancy through 6 weeks postpartum. All women received 60 mg of iron and 500 μg of folic acid daily during pregnancy, as per standard of care. This prospective analysis was conducted to determine the associations between maternal vitamin B12 biomarkers (that is, plasma vitamin B12, methylmalonic acid (MMA) and tHcy) during each trimester with infant vitamin B12 status (n=77) at 6 weeks of age. RESULTS At baseline (⩽14 weeks of gestation), 51% of mothers were vitamin B12 deficient (vitamin B12<150 pmol/l) and 43% had impaired vitamin B12 status (vitamin B12<150 pmol/l and MMA>0.26 μmol/l); 44% of infants were vitamin B12 deficient at 6 weeks of age. After adjusting for vitamin B12 supplementation, higher vitamin B12 concentrations in each trimester were associated with increased infant vitamin B12 concentrations and lower risk of vitamin B12 deficiency in infants (P<0.05). After adjusting for vitamin B12 supplementation, infants born to women with vitamin B12 deficiency had a twofold greater risk of vitamin B12 deficiency (P<0.01). Higher maternal folate concentrations also predicted lower risk of vitamin B12 deficiency in infants (P<0.05). Impaired maternal vitamin B12 status, which combined both circulating and functional biomarkers, was the single best predictor of infant vitamin B12 status. CONCLUSIONS Impaired maternal vitamin B12 status throughout pregnancy predicted higher risk of vitamin B12 deficiency in infants, after adjusting for vitamin B12 supplementation. Future interventions are needed to improve vitamin B12 status periconceptionally, and to ensure optimal vitamin B12 status and health outcomes in pregnant women and their children.
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Affiliation(s)
- J L Finkelstein
- Division of Nutritional Sciences, Cornell University, Ithaca, NY, USA.,Division of Nutrition, St. John's Research Institute, Bangalore, India
| | - A V Kurpad
- Division of Nutrition, St. John's Research Institute, Bangalore, India.,Department of Physiology, St. John's Medical College, Bangalore, India
| | - T Thomas
- Division of Epidemiology, Biostatistics and Population Health, St. John's Research Institute, Bangalore, India
| | - K Srinivasan
- Division of Mental Health and Neurosciences, St. John's Research Institute, Bangalore, India.,Department of Psychiatry, St. John's Medical College, Bangalore, India
| | - C Duggan
- Division of Nutrition, St. John's Research Institute, Bangalore, India.,Department of Nutrition, Harvard T.H. Chan School of Public Health and Center for Nutrition, Boston Children's Hospital, Boston, MA, USA
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Khan MI, O'Leary C, O'Brien A, Lester L, Silvari V, Duggan C, O'Shea S. Hospital Acquired Thrombosis (HAT) Prevention in an Acute Hospital; A Single Centre Cross-Sectional Study. Ir Med J 2017; 110:547. [PMID: 28665086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Evidence based guidelines are effective in reducing incidence of venous thromboembolism (VTE) which is associated with morbidly, mortality and economic burden. This study aimed to identify the proportion of inpatients who had a VTE risk assessment (RA) performed and who received thromboprophylaxis (TP), in Cork University Hospital. There was no structured RA tool at the time; information was obtained from medical and drug charts to ascertain if a RA was performed. Patients were then RA by researchers and stratified as per NICE guidelines and the proportion who received TP was calculated. One thousand and nineteen inpatients were screened. Risk was documented in 24% of cases. TP was prescribed in 43.2% of inpatients. Following application of a RA tool >80% were at high risk of VTE with low risk of bleeding with TP prescription in 46.3% of inpatients. A national collaborative effort should be encouraged to develop a standardized approach for safe RA of inpatients and prescription of TP for prevention of HAT.
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Affiliation(s)
- M I Khan
- Haematology Department, Cork University Hospital
- Clinical Research Facility, University College Cork
| | - C O'Leary
- Haematology Department, Cork University Hospital
| | - A O'Brien
- Haematology Department, Cork University Hospital
| | - L Lester
- Haematology Department, Cork University Hospital
| | - V Silvari
- Haematology Department, Cork University Hospital
| | - C Duggan
- Haematology Department, Cork University Hospital
| | - S O'Shea
- Haematology Department, Cork University Hospital
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Khan MI, O'Leary C, O'Brien A, Silvari V, Duggan C, O'Shea S. Incidence of Hospital Acquired Thrombosis (HAT) in a Tertiary Care Hospital. Ir Med J 2017; 110:542. [PMID: 28665081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Venous thromboembolism (VTE) is a major cause of preventable morbidity and mortality in hospitalized patients. In spite of guidelines, VTE prophylaxis continues to be underutilised, and hospital acquired thrombosis (HAT) continues to be a problem. This study was conducted to estimate the incidence of HAT in a tertiary referral centre and to examine whether VTE risk assessment and thromboprophylaxis (TP) were implemented. Patients 18 years and above, with a radiologically-confirmed acute VTE during the study period of 15 weeks were included. Acute VTE was diagnosed in 100 patients and HAT was diagnosed in 48. There were 12,024 admissions over the study period, therefore the incidence of HAT was 0.4%. TP was prescribed in only 35% of patients, and 65% did not receive any or appropriate TP. Hospitals without active implementation of a formal risk assessment tool and TP policy are likely to continue to have increased incidence of HAT.
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Affiliation(s)
- M I Khan
- Haematology Department, Cork University Hospital
| | - C O'Leary
- Haematology Department, Cork University Hospital
| | - A O'Brien
- Clinical Research Facility, University College Cork
| | - V Silvari
- Haematology Department, Cork University Hospital
| | - C Duggan
- Haematology Department, Cork University Hospital
| | - S O'Shea
- Haematology Department, Cork University Hospital
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26
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McTiernan A, Duggan C, Tapsoba J, Mason C, Wang CY. Abstract P4-13-02: Long-term effects of weight loss on breast cancer biomarkers in postmenopausal women. Cancer Res 2017. [DOI: 10.1158/1538-7445.sabcs16-p4-13-02] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background: Obesity increases risk for postmenopausal breast cancer, and is associated with elevated blood levels of inflammation-related marker C-reactive protein (CRP), insulin, glucose, and the angiogenesis-related biomarker vascular endothelial growth factor (VEGF). The long-term effect of weight loss on these breast cancer risk biomarkers is unknown. This study aim was to test the 30-month effect of weight loss on breast cancer biomarkers in postmenopausal overweight/obese women, who had completed a randomized control trial test of behavioral weight loss and/or exercise compared to control.
Methods: From 1/2005-7/2008, women (N=438) were randomized to 1 of 4 arms: reduced calorie weight loss diet (D; N=118); moderate intensity aerobic exercise (E; 225 minutes/week) (N=117); both interventions (D+E; N=116); or control (C, no intervention; N=87). The D intervention goals were: 1200-2000 calories/day, dietary fat < 30% of calories, and > 10% loss of initial weight. The E goal was > 45 minutes of moderate-intensity exercise 5 days/week. The D+E interventions were identical to those for D and E. A total of 157 women returned for a 30-month blood draw (18 months after end-of-study).
Analysis: We compared the average changes in outcomes from baseline to 30 months in weight loss (combining D and D+E groups) vs. no weight loss (combining C and E groups), according to the intention-to-treat principle, using generalized estimating equations (GEE). As a secondary, pre-planned analysis, we combined data for all women regardless of randomization group, and divided them into four categories based on change from baseline to 30 months: 1) gained weight or remained weight stable; 2) lost < 5% of baseline weight; 3) lost 5% - <10% of baseline weight; and 4) lost > 10% of baseline weight. We then compared 30-month analyte changes by these 30-month weight loss groups, with category 1 as referent.
Results: Mean 30-month weight changes from baseline were: D+E, - 7.7%; D, - 6.3%; E, -1.9%; and C, -3%. CRP was 22.5% lower than baseline for women randomized to a diet group, compared with a 4% reduction from baseline in women in a non-diet group (p=0.07). Insulin was 33% lower in women randomized to diet, while it was 20% lower in women not randomized to a diet group (p=0.10). Women who lost 5% - <10% of baseline weight at 30-months experienced an 18% (p<0.001) decrease in CRP compared to baseline, while those who lost > 10% had a 56% lower CRP level (p<0.001). VEGF decreased to a similar amount (14% -15%) in women who lost <10% of baseline weight; and decreased by 26% in those whose 30-month weight decreased by > 10% (p<0.002). Compared with baseline levels, insulin decreased by 16% in those who lost < 5% of baseline weight. In contrast, insulin levels decreased by 31% and 44% (each p=0.004), in those whose 30-month weight loss was 5% - <10% lower than baseline and > 10% lower than baseline, respectively. Glucose levels increased in women whose weight loss was < 5%, but remained stable in those whose 30-month weight was > 5% lower than baseline (each p=0.04).
Conclusions: Long-term weight loss of at least 5% may have biological effects relevant to breast cancer prevention in overweight or obese postmenopausal women.
Citation Format: McTiernan A, Duggan C, Tapsoba JdD, Mason C, Wang C-Y. Long-term effects of weight loss on breast cancer biomarkers in postmenopausal women [abstract]. In: Proceedings of the 2016 San Antonio Breast Cancer Symposium; 2016 Dec 6-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2017;77(4 Suppl):Abstract nr P4-13-02.
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Affiliation(s)
- A McTiernan
- Fred Hutchinson Cancer Research Center, Seattle, WA
| | - C Duggan
- Fred Hutchinson Cancer Research Center, Seattle, WA
| | - JdD Tapsoba
- Fred Hutchinson Cancer Research Center, Seattle, WA
| | - C Mason
- Fred Hutchinson Cancer Research Center, Seattle, WA
| | - C-Y Wang
- Fred Hutchinson Cancer Research Center, Seattle, WA
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27
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Khan MI, O'Leary C, Silvari V, O'Brien A, O'Connor M, Duggan C, O'Shea S. Venous Thromboembolism - Risk Assessment Tool and Thromboprophylaxis Policy: A National Survey. Ir Med J 2017; 110:499. [PMID: 28657276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Venous Thromboembolic (VTE) events in hospitalised patients are associated with significant mortality and morbidity and a major economic burden on the health service. It is well established in the literature that active implementation of a mandatory risk assessment tool and thromboprophylaxis policy reduces the incidence of hospital associated thrombosis (HAT). This study examines the utilization of a VTE risk assessment tool and thromboprophylaxis (TP) policy in Irish hospitals that manage acute admissions. A national survey was distributed to forty acute hospitals throughout Ireland. The response rate was 78% (31/40). The results showed that only 26% (n=8/31) of acute hospitals in Ireland have a local implemented TP policy. Six (75%) of these eight had a risk assessment tool in conjunction with the TP policy. All respondents who did not report to have a TP policy and risk assessment tool agreed that they should implement VTE prevention policy at their hospital. Based on the data from this survey and evidence from the effectiveness of the VTE prevention programme introduced in the United Kingdom, there is a need for a national risk assessment and thromboprophylaxis policy in Ireland. This change in practice would have the potential to prevent or reduce the morbidity and mortality associated with hospital acquired thrombosis.
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28
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Mishra PE, Shastri L, Thomas T, Duggan C, Bosch R, McDonald CM, Kurpad AV, Kuriyan R. Waist-to-Height Ratio as an Indicator of High Blood Pressure in Urban Indian School Children. Indian Pediatr 2016; 52:773-8. [PMID: 26519712 DOI: 10.1007/s13312-015-0715-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
OBJECTIVE To examine the utility of waist-to-height ratio to identify risk of high blood pressure when compared to body mass index and waist circumference in South Indian urban school children. DESIGN Secondary data analysis from a cross-sectional study. SETTING Urban schools around Bangalore, India. PARTICIPANTS 1913 children (58.1% males) aged 6-16 years with no prior history of chronic illness (PEACH study). METHODS Height, weight, waist circumference and of blood pressure were measured. Children with blood pressure ?90th percentile of age-, sex-, and height-adjusted standards were labelled as having high blood pressure. RESULTS 13.9% had a high waist-to-height ratio, 15.1% were overweight /obese and 21.7% had high waist circumference. High obesity indicators were associated with an increased risk of high blood pressure. The adjusted risk ratios (95% CI) of high systolic blood pressure with waist-to-height ratio, body mass index and waist circumference were 2.48 (1.76, 3.47), 2.59 (1.66, 4.04) and 2.38 (1.74, 3.26), respectively. Similar results were seen with high diastolic blood pressure. CONCLUSION Obesity indicators, especially waist-to-height ratio due to its ease of measurement, can be useful initial screening tools for risk of high blood pressure in urban Indian school children.
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Affiliation(s)
- P E Mishra
- St. Johns Medical College, and; Divisions of #Epidemiology and Biostatistics, and Nutrition, St. Johns Research Institute; Bangalore, India; Division of Gastroenterology, Hepatology and Nutrition, and Boston Childrens Hospital, Boston, MA, USA; Department of Biostatistics, Harvard School of Public Health; Boston, MA, USA. Correspondence to: Dr Rebecca Kuriyan, Division of Nutrition, St. Johns Research Institute, Bangalore 560 034, India.
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29
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Shastri L, Mishra PE, Dwarkanath P, Thomas T, Duggan C, Bosch R, McDonald CM, Thomas A, Kurpad AV. Association of oral iron supplementation with birth outcomes in non-anaemic South Indian pregnant women. Eur J Clin Nutr 2014; 69:609-13. [DOI: 10.1038/ejcn.2014.248] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Revised: 09/12/2014] [Accepted: 10/01/2014] [Indexed: 11/09/2022]
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30
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Ezeamama AE, Duggan C, Manji KP, Spiegelman D, Hertzmark E, Bosch RJ, Kupka R, Okuma JO, Kisenge R, Aboud S, Fawzi WW. Clinical malaria diagnosis in pregnancy in relation to early perinatal mother-to-child transmission of HIV: a prospective cohort study. HIV Med 2013; 15:276-85. [PMID: 24215465 DOI: 10.1111/hiv.12111] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/01/2013] [Indexed: 11/28/2022]
Abstract
OBJECTIVES We prospectively investigated fever symptoms and maternal diagnosis of malaria in pregnancy (MIP) in relation to child HIV infection among 2368 pregnant HIV-positive women and their infants, followed up from pregnancy until 6 weeks post-delivery in Tanzania. METHODS Doctors clinically diagnosed and treated MIP and fever symptoms during prenatal health care. Child HIV status was determined via DNA polymerase chain reaction (PCR). Multivariable logistic regression models were used to estimate relative risks (RRs) and 95% confidence intervals (CIs) for HIV mother-to-child transmission (MTCT) by the 6th week of life. RESULTS Mean gestational age at enrolment was 22.2 weeks. During follow-up, 16.6% of mothers had at least one MIP diagnosis, 15.9% reported fever symptoms and 8.7% had both fever and MIP diagnosis. Eleven per cent of HIV-exposed infants were HIV-positive by 6 weeks. The RR of HIV MTCT was statistically similar for infants whose mothers were ever vs. never clinically diagnosed with MIP (RR 1.24; 95% CI 0.94-1.64), were diagnosed with one vs. no clinical MIP episodes (RR 1.07; 95% CI 0.77-1.48) and had ever vs. never reported fever symptoms (RR 1.04; 95% CI 0.78-1.38) in pregnancy. However, the HIV MTCT risk increased by 29% (95% CI 4-58%) per MIP episode. Infants of women with at least two vs. no MIP diagnoses were 2.1 times more likely to be HIV infected by 6 weeks old (95% CI 1.31-3.45). CONCLUSIONS Clinical MIP diagnosis, but not fevers, in HIV-positive pregnant women was associated with an elevated risk of early HIV MTCT, suggesting that malaria prevention and treatment in pregnant HIV-positive women may enhance the effectiveness of HIV prevention in MTCT programmes in this setting. Future studies using a laboratory-confirmed diagnosis of malaria are needed to confirm this association.
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Affiliation(s)
- A E Ezeamama
- Department of Epidemiology & Biostatistics, University of Georgia, Athens, GA, USA
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31
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Abbenhardt C, McTiernan A, Alfano CM, Wener MH, Campbell KL, Duggan C, Foster-Schubert KE, Kong A, Toriola AT, Potter JD, Mason C, Xiao L, Blackburn GL, Bain C, Ulrich CM. Effects of individual and combined dietary weight loss and exercise interventions in postmenopausal women on adiponectin and leptin levels. J Intern Med 2013; 274:163-75. [PMID: 23432360 PMCID: PMC3738194 DOI: 10.1111/joim.12062] [Citation(s) in RCA: 92] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
BACKGROUND Excess body weight and a sedentary lifestyle are associated with the development of several diseases, including cardiovascular disease, diabetes and cancer in women. One proposed mechanism linking obesity to chronic diseases is an alteration in adipose-derived adiponectin and leptin levels. We investigated the effects of 12-month reduced calorie, weight loss and exercise interventions on adiponectin and leptin concentrations. METHODS Overweight/obese postmenopausal women (n = 439) were randomized as follows: (i) a reduced calorie, weight-loss diet (diet; N = 118), (ii) moderate-to-vigorous intensity aerobic exercise (exercise; N = 117), (iii) a combination of a reduced calorie, weight-loss diet and moderate-to-vigorous intensity aerobic exercise (diet + exercise; N = 117), and (iv) control (N = 87). The reduced calorie diet had a 10% weight-loss goal. The exercise intervention consisted of 45 min of moderate-to-vigorous aerobic activity 5 days per week. Adiponectin and leptin levels were measured at baseline and after 12 months of intervention using a radioimmunoassay. RESULTS Adiponectin increased by 9.5% in the diet group and 6.6% in the diet + exercise group (both P ≤ 0.0001 vs. control). Compared with controls, leptin decreased with all interventions (diet + exercise, -40.1%, P < 0.0001; diet, -27.1%, P < 0.0001; exercise, -12.7%, P = 0.005). The results were not influenced by the baseline body mass index (BMI). The degree of weight loss was inversely associated with concentrations of adiponectin (diet, P-trend = 0.0002; diet + exercise, P-trend = 0.0005) and directly associated with leptin (diet, P-trend < 0.0001; diet + exercise, P-trend < 0.0001). CONCLUSION Weight loss through diet or diet + exercise increased adiponectin concentrations. Leptin concentrations decreased in all of the intervention groups, but the greatest reduction occurred with diet + exercise. Weight loss and exercise exerted some beneficial effects on chronic diseases via effects on adiponectin and leptin.
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Affiliation(s)
- C Abbenhardt
- Division of Preventive Oncology, National Center for Tumor Diseases and German Cancer Research Center, Heidelberg, Germany
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Petraro P, Duggan C, Urassa W, Msamanga G, Makubi A, Spiegelman D, Fawzi WW. Determinants of anemia in postpartum HIV-negative women in Dar es Salaam, Tanzania. Eur J Clin Nutr 2013; 67:708-17. [PMID: 23612515 DOI: 10.1038/ejcn.2013.71] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2012] [Revised: 02/11/2013] [Accepted: 02/13/2013] [Indexed: 02/04/2023]
Abstract
OBJECTIVE The determinants of anemia during both pregnancy and postpartum recovery remain incompletely understood in sub-Saharan African women. SUBJECTS/METHODS In a prospective cohort study among pregnant women, we assessed dietary, biochemical, anthropometric, infectious and sociodemographic factors at baseline. In multivariate Cox proportional hazards models, we examined predictors of incident anemia (hemoglobin <11 g/dl) and iron deficiency anemia (anemia plus mean corpuscular volume <80fL), and recovery from anemia and iron deficiency anemia through 18 months postpartum at antenatal clinics in Dar es Salaam, Tanzania between 2001 and 2005. A total of 2364 non-anemic pregnant women and 4884 anemic women were enrolled between 12 and 27 weeks of gestation. RESULTS In total, 292 women developed anemia during the postpartum period and 165 developed iron deficiency anemia, whereas 2982 recovered from baseline anemia and 2044 from iron deficiency anemia. Risk factors for postpartum anemia were delivery complications (RR 1.6, 95% confidence interval (CI) 1.13, 2.22) and low postpartum CD4 cell count (RR 1.73, 95% CI 0.96, 3.17). Iron/folate supplementation during pregnancy had a protective relationship with the incidence of iron deficiency anemia. Absence of delivery complications, education status and iron/folate supplementation were positively associated with time to recovery from iron deficiency. CONCLUSION Maternal nutritional status during pregnancy, prenatal iron/folate supplementation, perinatal care, and prevention and management of infections, such as malaria, are modifiable risk factors for the occurrence of, and recovery from, anemia.
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Affiliation(s)
- P Petraro
- Department of Nutrition, Harvard School of Public Health, Boston, MA, USA.
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Varlamov A, Duggan C, Strelets V, Kravchenko A, Howard R, Liddle P. Searching for electrophysiological endophenotypes of antisocial personality disorder: ERP and ERBP traits in visual Go/No Go and auditory oddball tasks. Int J Psychophysiol 2012. [DOI: 10.1016/j.ijpsycho.2012.06.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Finkelstein JL, Manji KP, Duggan C, Hertzmark E, Mehta S, Msamanga GI, Spiegelman D, Fawzi WW. PREDICTORS OF INCIDENT TUBERCULOSIS IN HIV-EXPOSED CHILDREN IN TANZANIA. East Afr Med J 2012; 89:183-92. [PMID: 26856040 PMCID: PMC10864092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
OBJECTIVE To examine the predictors of tuberculosis infection in HIV-exposed children. DESIGN A longitudinal cohort study nested within a randomised controlled trial. SETTING Antenatal clinics in Dar-es-Salaam, Tanzania. SUBJECTS Children born to 875 HIV-infected women in Tanzania. RESULTS A total of 82 children developed tuberculosis during the follow-up period. In multivariate analyses, HIV infection was associated with a six-fold increase in risk of tuberculosis. Breastfeeding duration, child mid-upper arm circumference, and maternal CD4 T-cell counts were inversely related to risk of tuberculosis. In HIV-infected children, greater number of people eating at the same household meal and child CD8 T-cell counts were associated with increased risk of tuberculosis; higher maternal lymphocyte counts, increased duration of breastfeeding, and lower vitamin E levels were associated with reduced risk of tuberculosis. In HIV-uninfected children, breastfeeding duration and increased child mid-upper arm circumference were associated with reduced risk of tuberculosis. CONCLUSION Breastfeeding duration, HIV status, maternal and child nutritional and immunological status were important predictors of child tuberculosis. Appropriate infant feeding and nutritional interventions could represent important adjuncts to prevent tuberculosis in children born to HIV-infected women in sub-Saharan Africa.
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Affiliation(s)
- J L Finkelstein
- Division of Nutritional Sciences, Cornell University, Ithaca, New York, USA
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Baliousis M, Huband N, Duggan C, McCarthy L, Völlm B. P-683 - Development and validation of a scale to evaluate treatment progress in secure mental health settings. Eur Psychiatry 2012. [DOI: 10.1016/s0924-9338(12)74850-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
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McCarron SL, Haslam K, Kelly J, Duggan C, Langabeer SE. A novel, variant BCR-ABL1 transcript not detected by standard real-time quantitative PCR in a patient with chronic myeloid leukaemia. Int J Lab Hematol 2011; 34:e1-2. [PMID: 21692997 DOI: 10.1111/j.1751-553x.2011.01346.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Kupka R, Manji KP, Wroe E, Aboud S, Bosch RJ, Fawzi WW, Kurpad AV, Duggan C. Comparison of isotope dilution with bioelectrical impedance analysis among HIV-infected and HIV-uninfected pregnant women in Tanzania. Int J Body Compos Res 2011; 9:1-10. [PMID: 24244104 PMCID: PMC3826565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
BACKGROUND Bioelectrical impedance analysis (BIA) is a simple tool to assess total body water (TBW), from which body composition can be estimated using statistical equations. However, standard BIA equations have not been sufficiently validated during pregnancy, in HIV infection, or in sub-Saharan Africa. We therefore compared TBW estimates from multifrequency BIA with those from the reference method deuterium isotope dilution (Deut) in a cohort of 30 HIV-uninfected and 30 HIV-infected pregnant women from Tanzania. METHODS We enrolled pregnant women presenting for routine antenatal care and collected data on pregnancy outcomes. At each trimester of gestation and once at 10-wk post-partum, we measured maternal anthropometry, TBWBIA, and TBWDeut. RESULTS TBWBIA was highly correlated at each time point with TBWDeut among HIV-infected (all P ≤0.001) and HIV-uninfected women (all P <0.0001). During pregnancy, mean TBWBIA progressively underestimated TBWDeut in the overall cohort; trimester-specific differences (mean ±SD) were -1.02 ±2.36 kg, -1.47 ±2.43 kg, and -2.42 ±2.63 kg, respectively. The difference at 10-wk postpartum was small (-0.24 ±2.07 kg). In Bland-Altman and regression models, TBWBIA was subject to a systematic predictive bias at each antenatal and postnatal time point (all P ≤0.038). Among HIV-positive women, TBWDeut measured during the first (P =0.02) and second trimester (P =0.03) was positively related to birthweight. CONCLUSIONS The validity of current BIA equations to assess TBW during pregnancy and in the postpartum period among women from sub-Saharan Africa remains uncertain. Deuterium dilution may assess aspects of maternal body composition relevant for pregnancy outcomes among HIV-infected women.
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Affiliation(s)
- R Kupka
- Department of Nutrition, Harvard School of Public Health, Boston, MA, USA ; UNICEF Regional Office for West and Central Africa
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Abstract
Abstract
Aims
To explore and evaluate the implementation of shared care in the UK, to identify failings and to make recommendations for successful implementation of shared care in the future.
Methods
The study utilised a triangulation approach, employing three different methods to explore the production and format of shared care protocols (SCPs) and the perceived use and future trends of shared care. A postal survey of hospital pharmacists and pharmaceutical and medical advisers in health authorities and interviews with health care professionals provided insight into perceptions of shared care and recommendations for the future. A content analysis of a sample of SCPs in current use assessed the utility of SCPs in practice.
Results
A total of 321 SCPs were identified that described 99 different drugs and treatments. The protocols varied considerably with no apparent standard either within or between regions, but there was a correlation between the patient-related information available, information across the health care interface (r=0.355, P=0.05) and pharmaceutical information (r=0.401, P=0.05). There were expressions of uncertainty about the benefit of such protocols to patients. Health authority staff in particular expressed predominantly negative attitudes in the questionnaire whereas the pharmacists were more positive. The transfer of prescribing and associated costs from hospital to community (described as “cost shifting”) was repeatedly identified as a barrier, together with competing professional interests and reluctance to change with the times. General practitioners (GPs) were most commonly excluded from the production of SCPs, which may enforce negative feelings around implementation of SCPs across the health care interface. Improved information technology and better use of evidence-based guidelines and protocols were seen as ways forward in developing shared care.
Conclusions
Since 1991, a large number of SCPs have been produced in the UK but the benefits to patients are not clear. There is a general perception of cynicism about their use; “cost-shifting” is perceived as their main purpose. There appears to have been no formal evaluation of their use or mechanisms for their implementation, and distribution has been erratic. This study highlights that, with greater involvement of health care professionals, better communication systems and the removal of identified barriers, shared care is a concept essential in the evolving NHS.
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Affiliation(s)
- C Duggan
- Academic Department of Pharmacy, Barts & the London NHS Trust, West Smithfield, London, England EC1A 7BE
| | - N Beavon
- Kingston and Richmond Health Authority
| | - I Bates
- School of Pharmacy, University of London
| | - S Patel
- School of Pharmacy, University of London
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Douglas E, Chapman S, Hudson S, Paterson K, Duggan C. Patients' perspectives on medicines and pharmacy: views of patients with Type 2 diabetes. International Journal of Pharmacy Practice 2011. [DOI: 10.1111/j.2042-7174.2001.tb01136.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Abstract
Focal points
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Affiliation(s)
- E Douglas
- Pharmaceutical Care Health Service Unit, Department of Pharmaceutical Sciences, University of Strathclyde
| | - S Chapman
- Pharmaceutical Care Health Service Unit, Department of Pharmaceutical Sciences, University of Strathclyde
| | - S Hudson
- Pharmaceutical Care Health Service Unit, Department of Pharmaceutical Sciences, University of Strathclyde
| | | | - C Duggan
- Academic Department of Pharmacy, St Bartholomews Hospital, London
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Bateson C, Duggan C, Bates I. Pharmaceutical care across the health care interface: an evidence-based approach to developing and evaluating documentation in practice. International Journal of Pharmacy Practice 2011. [DOI: 10.1111/j.2042-7174.2002.tb00616.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Abstract
Focal points
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Affiliation(s)
- C Bateson
- Academic Department of Pharmacy, Barts and The London NHS Trust
| | - C Duggan
- Academic Department of Pharmacy, Barts and The London NHS Trust
| | - I Bates
- Centre for Practice and Policy, School of Pharmacy, University of London
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Abstract
Abstract
Focal points
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Affiliation(s)
- K Åström
- Academic Department of Pharmacy, Barts and The London NHS Trust, London
| | - C Duggan
- Academic Department of Pharmacy, Barts and The London NHS Trust, London
| | - I Bates
- Centre for Practice and Policy, School of Pharmacy, University of London
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Reed N, Taha T, Keightley M, Duggan C, McAuliffe J, Cubos J, Baker J, Faught B, McPherson M, Montelpare W. Measurement of Head Impacts in Youth Ice Hockey Players. Int J Sports Med 2010; 31:826-33. [DOI: 10.1055/s-0030-1263103] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Aström K, Duggan C, Bates I. Posters: Research in Progress. International Journal of Pharmacy Practice 2010. [DOI: 10.1211/096176703777341291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
- K Aström
- Academic Department of Pharmacy, Barts and the London NHS Trust
| | - C Duggan
- Academic Department of Pharmacy, Barts and the London NHS Trust
| | - I Bates
- Department of Practice and Policy, School of Pharmacy, University of London
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Vollm B, Gibbon S, Khalifa N, Duggan C, Stoffers J, Huband N, Ferriter M, Lieb K. S08-01 - Cochrane reviews of pharmacological and psychological interventions for antisocial personality disorder (ASPD). Eur Psychiatry 2010. [DOI: 10.1016/s0924-9338(10)70090-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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Moss RL, Kalish LA, Duggan C, Johnston P, Brandt ML, Dunn JCY, Ehrenkranz RA, Jaksic T, Nobuhara K, Simpson BJ, McCarthy MC, Sylvester KG. Clinical parameters do not adequately predict outcome in necrotizing enterocolitis: a multi-institutional study. J Perinatol 2008; 28:665-74. [PMID: 18784730 DOI: 10.1038/jp.2008.119] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
OBJECTIVE Necrotizing enterocolitis (NEC) remains a major cause of neonatal morbidity and mortality. Some infants recover uneventfully with medical therapy whereas others develop severe disease (that is, NEC requiring surgery or resulting in death). Repeated attempts to identify clinical parameters that would reliably identify infants with NEC most likely to progress to severe disease have been unsuccessful. We hypothesized that comprehensive prospective data collection at multiple centers would allow us to develop a model which would identify those babies at risk for progressive NEC. STUDY DESIGN This prospective, observational study was conducted at six university children's hospitals. Study subjects were neonates with suspected or confirmed NEC. Comprehensive maternal and newborn histories were collected at the time of enrollment, and newborn clinical data were collected prospectively, thereafter. Multivariate logistic regression analysis was used to develop a predictive model of risk factors for progression. RESULT Of 455 neonates analyzed, 192 (42%) progressed to severe disease, and 263 (58%) advanced to full feedings without operation. The vast majority of the variables studied proved not to be associated with progression to severe disease. A total of 12 independent predictors for progression were identified, including only 3 not previously described: having a teenaged mother (odds ratio, OR, 3.14; 95% confidence interval, CI, 1.45 to 6.96), receiving cardiac compressions and/or resuscitative drugs at birth (OR, 2.51; 95% CI, 1.17 to 5.48), and having never received enteral feeding before diagnosis (OR, 2.41; 95% CI, 1.08 to 5.52). CONCLUSION Our hypothesis proved false. Rigorous prospective data collection of a sufficient number of patients did not allow us to create a model sufficiently predictive of progressive NEC to be clinically useful. It appears increasingly likely that further analysis of clinical parameters alone will not lead to a significant improvement in our understanding of NEC. We believe that future studies must focus on advanced biologic parameters in conjunction with clinical findings.
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Affiliation(s)
- R L Moss
- Department of Surgery, Yale University School of Medicine, New Haven, CT 06520, USA.
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Grimes T, Delaney T, Duggan C, Kelly JG, Graham IM. Survey of medication documentation at hospital discharge: implications for patient safety and continuity of care. Ir J Med Sci 2008; 177:93-7. [PMID: 18414970 DOI: 10.1007/s11845-008-0142-2] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2007] [Accepted: 02/15/2008] [Indexed: 11/30/2022]
Abstract
BACKGROUND Medication discrepancies at the time of hospital discharge are common and can result in error, patient/carer inconvenience or patient harm. Providing accurate medication information to the next care provider is necessary to prevent adverse events. AIMS To investigate the quality and consistency of medication details generated for such transfer from an Irish teaching hospital. METHODS This was an observational study of 139 cardiology patients admitted over a 3 month period during which a pharmacist prospectively recorded details of medication inconsistencies. RESULTS A discrepancy in medication documentation at discharge occurred in 10.8% of medication orders, affecting 65.5% of patients. While patient harm was assessed, it was only felt necessary to contact three (2%) patients. The most common inconsistency was drug omission (20.9%). CONCLUSIONS Inaccuracy of medication information at hospital discharge is common and compromises quality of care.
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Affiliation(s)
- T Grimes
- School of Pharmacy, Royal College of Surgeons in Ireland (RCSI), Dublin, Ireland.
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Duggan C, Bates I. Medicine information needs of patients: the relationships between information needs, diagnosis and disease. Qual Saf Health Care 2008; 17:85-9. [DOI: 10.1136/qshc.2005.017590] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Smith D, Ziebert F, Humphrey D, Duggan C, Steinbeck M, Zimmermann W, Käs J. Molecular motor-induced instabilities and cross linkers determine biopolymer organization. Biophys J 2007; 93:4445-52. [PMID: 17604319 PMCID: PMC2098725 DOI: 10.1529/biophysj.106.095919] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
All eukaryotic cells rely on the active self-organization of protein filaments to form a responsive intracellular cytoskeleton. The necessity of motility and reaction to stimuli additionally requires pathways that quickly and reversibly change cytoskeletal organization. While thermally driven order-disorder transitions are, from the viewpoint of physics, the most obvious method for controlling states of organization, the timescales necessary for effective cellular dynamics would require temperatures exceeding the physiologically viable temperature range. We report a mechanism whereby the molecular motor myosin II can cause near-instantaneous order-disorder transitions in reconstituted cytoskeletal actin solutions. When motor-induced filament sliding diminishes, the actin network structure rapidly and reversibly self-organizes into various assemblies. Addition of stable cross linkers was found to alter the architectures of ordered assemblies. These isothermal transitions between dynamic disorder and self-assembled ordered states illustrate that the interplay between passive crosslinking and molecular motor activity plays a substantial role in dynamic cellular organization.
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Affiliation(s)
- D Smith
- Institute for Soft Matter Physics, University of Leipzig, Germany
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Abstract
Immunohistochemical staining for FHIT and PCNA proteins was carried out in 451 breast lesions showing nonproliferative benign breast disease (BBD) (n=263), proliferative BBD without atypia (n=128), proliferative BBD with atypia (n=11), carcinoma in situ (n=15) or invasive carcinoma (n=34) and for EGFR protein in a subset of 71 of these cases. FHIT underexpression was not detected in nonproliferative lesions, but occurred in 2% of proliferative BBD without atypia, 10% proliferative BBD with atypia, 27% of carcinoma in situ and 41% of invasive carcinoma, which suggests that it could be useful in assessing those carcinoma in situ lesions (ductal, DCIS and lobular, LCIS) that are more likely to progress to malignancy. Preliminary microarray comparisons on DCIS and invasive carcinoma samples dissected from formalin-fixed paraffin sections showed a consistent downregulation of two previously identified FHIT-related genes, caspase 1 and BRCA1 in lesions underexpressing FHIT.
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Affiliation(s)
- G Terry
- Department of Epidemiology, Mathematics and Statistics, Cancer Research UK, Queen Mary University of London, Wolfson Institute, Charterhouse Square, London ECIM 6BQ, UK
| | - L Ho
- Department of Epidemiology, Mathematics and Statistics, Cancer Research UK, Queen Mary University of London, Wolfson Institute, Charterhouse Square, London ECIM 6BQ, UK
- E-mail:
| | - P Londesborough
- Department of Epidemiology, Mathematics and Statistics, Cancer Research UK, Queen Mary University of London, Wolfson Institute, Charterhouse Square, London ECIM 6BQ, UK
| | - C Duggan
- Department of Epidemiology, Mathematics and Statistics, Cancer Research UK, Queen Mary University of London, Wolfson Institute, Charterhouse Square, London ECIM 6BQ, UK
| | - A Hanby
- St. James's University Hospital, Beckett Street, Leeds LS9 7TF, UK
| | - J Cuzick
- Department of Epidemiology, Mathematics and Statistics, Cancer Research UK, Queen Mary University of London, Wolfson Institute, Charterhouse Square, London ECIM 6BQ, UK
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Abstract
BACKGROUND Borderline personality disorder (BPD) is a relatively common personality disorder with a major impact on health services as those affected often present in crisis, often self-harming. OBJECTIVES To evaluate the effects of psychological interventions for people with borderline personality disorder. SEARCH STRATEGY We conducted a systematic search of 26 specialist and general bibliographic databases (December 2002) and searched relevant reference lists for further trials. SELECTION CRITERIA All relevant clinical randomised controlled trials involving psychological treatments for people with BPD. The definition of psychological treatments included behavioural, cognitive-behavioural, psychodynamic and psychoanalytic. DATA COLLECTION AND ANALYSIS We independently selected, quality assessed and data extracted studies. For binary outcomes we calculated a standard estimation of the risk ratio (RR), its 95% confidence interval (CI), and where possible the number need to help/harm (NNT/H). For continuous outcomes, endpoint data were preferred to change data. Non-skewed data from valid scales were summated using a weighted mean difference (WMD). MAIN RESULTS We identified seven studies involving 262 people, and five separate comparisons. Comparing dialectical behaviour therapy (DBT) with treatment as usual studies found no difference for the outcome of still meeting SCID-II criteria for the diagnosis of BPD by six months (n=28, 1 RCT, RR 0.69 CI 0.35 to 1.38) or admission to hospital in previous three months (n=28, 1 RCT, RR 0.77 CI 0.28 to 2.14). Self harm or parasuicide may decrease at 6 to 12 months (n=63, 1 RCT, RR 0.81 CI 0.66 to 0.98, NNT 12 CI 7 to 108). One study detected statistical difference in favour of people receiving DBT compared with those allocated to treatment as usual for average scores of suicidal ideation at 6 months (n=20, MD -15.30 CI -25.46 to -5.14). There was no difference for the outcome of leaving the study early (n=155, 3 RCTs, RR 0.74 CI 0.52 to 1.04). For the outcome of interviewer-assessed alcohol free days, skewed data are reported and tend to favour DBT. When a substance abuse focused DBT was compared with comprehensive validation therapy plus 12-step substance misuse programme no clear differences were found for service outcomes (n=23, 1 RCT, RR imprisoned 1.09 CI 0.64 to 1.87) or leaving the study early (n=23, 1 RCT, RR 7.58 CI 0.44 to 132.08). When dialectical behaviour therapy-oriented treatment is compared with client centred therapy no differences were found for service outcomes (n=24, 1 RCT, RR admitted 0.33 CI 0.08 to 1.33). However, fewer people in the DBT group displayed indicators of parasuicidal behaviour (n=24, RR 0.13 CI 0.02 to 0.85, NNT 2 CI 2 to 11). There were no differences for outcomes of anxiety and depression (n=24, 1 RCT, RR anxiety BAI >/=10 0.60 CI 0.32 to 1.12; RR depression HDRS >/=10 0.43 CI 0.14 to 1.28) but people who received DBT had less general psychiatric severity than those in the control (MD BPRS at 6 months -7.41 CI -13.72 to -1.10). Finally this one relevant study reports skewed data for suicidal ideation with considerably lower scores for people allocated to DBT. When psychoanalytically oriented partial hospitalization was compared with general psychiatric care the former tended to come off best. People who received treatment in a psychoanalytic orientated day hospital were less likely to be admitted into inpatient care when measured at different time points (e.g. n=44, RR admitted to inpatient 24 hour care >18 to 24 months 0.05 CI 0.00 to 0.77, NNT 3 CI 3 to 10) Fewer people in psychoanalytically oriented partial hospitalization needed day hospital intervention in the 18 months after discharge (n=44, 1 RCT, RR 0.04 CI 0.00 to 0.59, NNT 2 CI 2 to 8). More people in the control group took psychotropic medication by the 30 to 36 month follow-up, than those receiving psychoanalytic treatment (n=44, 1 RCT, RR 0.44 CI 0.25 to 0.80, NNT 3 CI 2 to 7). Anxiety and depression scores were generally lower in the psychoanalytically oriented partial hospitalization group (n=44, 1 RCT, RR >/=14 on BDI 0.52 CI 0.34 to 0.80, NNT 3 CI 3 to 6), as are global severity scores. People receiving psychoanalytic care in a day hospital had better social improvement in social adjustment using the SAS-SR at 6 to 12 months compared with people in general psychiatric care (MD -0.70 CI -1.08 to -0.32). Rates of attrition were the same (n=44, 1 RCT, RR leaving the study early 1.00 CI 0.23 to 4.42). AUTHORS' CONCLUSIONS This review suggests that some of the problems frequently encountered by people with borderline personality disorder may be amenable to talking/behavioural treatments but all therapies remain experimental and the studies are too few and small to inspire full confidence in their results. These findings require replication in larger 'real-world' studies.
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Affiliation(s)
- C A Binks
- University of Bristol, 8 Priory, Bristol, UK, BS8 1TZ.
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