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Shen G, Zhao D, Zeng Y. Exploiting nonlinear dendritic adaptive computation in training deep Spiking Neural Networks. Neural Netw 2024; 170:190-201. [PMID: 37989040 DOI: 10.1016/j.neunet.2023.10.056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 08/22/2023] [Accepted: 10/31/2023] [Indexed: 11/23/2023]
Abstract
Inspired by the information transmission process in the brain, Spiking Neural Networks (SNNs) have gained considerable attention due to their event-driven nature. However, as the network structure grows complex, managing the spiking behavior within the network becomes challenging. Networks with excessively dense or sparse spikes fail to transmit sufficient information, inhibiting SNNs from exhibiting superior performance. Current SNNs linearly sum presynaptic information in postsynaptic neurons, overlooking the adaptive adjustment effect of dendrites on information processing. In this study, we introduce the Dendritic Spatial Gating Module (DSGM), which scales and translates the input, reducing the loss incurred when transforming the continuous membrane potential into discrete spikes. Simultaneously, by implementing the Dendritic Temporal Adjust Module (DTAM), dendrites assign different importance to inputs of different time steps, facilitating the establishment of the temporal dependency of spiking neurons and effectively integrating multi-step time information. The fusion of these two modules results in a more balanced spike representation within the network, significantly enhancing the neural network's performance. This approach has achieved state-of-the-art performance on static image datasets, including CIFAR10 and CIFAR100, as well as event datasets like DVS-CIFAR10, DVS-Gesture, and N-Caltech101. It also demonstrates competitive performance compared to the current state-of-the-art on the ImageNet dataset.
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Affiliation(s)
- Guobin Shen
- Brain-Inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, China; School of Future Technology, University of Chinese Academy of Sciences, Beijing, China
| | - Dongcheng Zhao
- Brain-Inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, China
| | - Yi Zeng
- Brain-Inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, China; Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences (CAS), Shanghai, China; School of Future Technology, University of Chinese Academy of Sciences, Beijing, China.
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2
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Shen G, Zhao D, Dong Y, Zeng Y. Brain-inspired neural circuit evolution for spiking neural networks. Proc Natl Acad Sci U S A 2023; 120:e2218173120. [PMID: 37729206 PMCID: PMC10523604 DOI: 10.1073/pnas.2218173120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 07/27/2023] [Indexed: 09/22/2023] Open
Abstract
In biological neural systems, different neurons are capable of self-organizing to form different neural circuits for achieving a variety of cognitive functions. However, the current design paradigm of spiking neural networks is based on structures derived from deep learning. Such structures are dominated by feedforward connections without taking into account different types of neurons, which significantly prevent spiking neural networks from realizing their potential on complex tasks. It remains an open challenge to apply the rich dynamical properties of biological neural circuits to model the structure of current spiking neural networks. This paper provides a more biologically plausible evolutionary space by combining feedforward and feedback connections with excitatory and inhibitory neurons. We exploit the local spiking behavior of neurons to adaptively evolve neural circuits such as forward excitation, forward inhibition, feedback inhibition, and lateral inhibition by the local law of spike-timing-dependent plasticity and update the synaptic weights in combination with the global error signals. By using the evolved neural circuits, we construct spiking neural networks for image classification and reinforcement learning tasks. Using the brain-inspired Neural circuit Evolution strategy (NeuEvo) with rich neural circuit types, the evolved spiking neural network greatly enhances capability on perception and reinforcement learning tasks. NeuEvo achieves state-of-the-art performance on CIFAR10, DVS-CIFAR10, DVS-Gesture, and N-Caltech101 datasets and achieves advanced performance on ImageNet. Combined with on-policy and off-policy deep reinforcement learning algorithms, it achieves comparable performance with artificial neural networks. The evolved spiking neural circuits lay the foundation for the evolution of complex networks with functions.
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Affiliation(s)
- Guobin Shen
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing100190, China
| | - Dongcheng Zhao
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing100190, China
| | - Yiting Dong
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing100190, China
| | - Yi Zeng
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing100190, China
- Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Beijing100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing100190, China
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3
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Zeng Y, Zhao D, Zhao F, Shen G, Dong Y, Lu E, Zhang Q, Sun Y, Liang Q, Zhao Y, Zhao Z, Fang H, Wang Y, Li Y, Liu X, Du C, Kong Q, Ruan Z, Bi W. BrainCog: A spiking neural network based, brain-inspired cognitive intelligence engine for brain-inspired AI and brain simulation. Patterns (N Y) 2023; 4:100789. [PMID: 37602224 PMCID: PMC10435966 DOI: 10.1016/j.patter.2023.100789] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 02/06/2023] [Accepted: 06/05/2023] [Indexed: 08/22/2023]
Abstract
Spiking neural networks (SNNs) serve as a promising computational framework for integrating insights from the brain into artificial intelligence (AI). Existing software infrastructures based on SNNs exclusively support brain simulation or brain-inspired AI, but not both simultaneously. To decode the nature of biological intelligence and create AI, we present the brain-inspired cognitive intelligence engine (BrainCog). This SNN-based platform provides essential infrastructure support for developing brain-inspired AI and brain simulation. BrainCog integrates different biological neurons, encoding strategies, learning rules, brain areas, and hardware-software co-design as essential components. Leveraging these user-friendly components, BrainCog incorporates various cognitive functions, including perception and learning, decision-making, knowledge representation and reasoning, motor control, social cognition, and brain structure and function simulations across multiple scales. BORN is an AI engine developed by BrainCog, showcasing seamless integration of BrainCog's components and cognitive functions to build advanced AI models and applications.
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Affiliation(s)
- Yi Zeng
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 101408, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Dongcheng Zhao
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Feifei Zhao
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Guobin Shen
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Yiting Dong
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Enmeng Lu
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Qian Zhang
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Yinqian Sun
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Qian Liang
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Yuxuan Zhao
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Zhuoya Zhao
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Hongjian Fang
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Yuwei Wang
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Yang Li
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Xin Liu
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Chengcheng Du
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Qingqun Kong
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Zizhe Ruan
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Weida Bi
- Brain-inspired Cognitive Intelligence Lab, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
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Xiong Y, Shen G, Shi L, Lin Y, Zhang HW, Li SL, Di Q, Chen CH, Cao JJ. [A case of intrarenal artery stenosis treated by transcathether segmental renal artery embolization]. Zhonghua Er Ke Za Zhi 2023; 61:742-744. [PMID: 37528020 DOI: 10.3760/cma.j.cn112140-20221214-01048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Affiliation(s)
- Y Xiong
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - G Shen
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - L Shi
- Department of Cardiology, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - Y Lin
- Department of Cardiology, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - H W Zhang
- Department of Cardiology, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - S L Li
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - Q Di
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - C H Chen
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - J J Cao
- Department of Intervention and Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
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Cao JJ, Di Q, Shen G, Li SL, Chen CH, Xiong Y, Jiao YH, Guo XF. [Clinical analysis of 4 acute ischemic stroke children treated with endovascular thrombectomy]. Zhonghua Er Ke Za Zhi 2023; 61:159-163. [PMID: 36720599 DOI: 10.3760/cma.j.cn112140-20220927-00844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Objective: To assess the feasibility of endovascular thrombectomy (EVT) for the treatment of acute ischemic stroke (AIS) in children. Methods: Clinical data and follow-up information of 4 AIS children who received EVT in the Department of Intervention & Hemangioma at the Children's Hospital of the Capital Institute of Pediatrics from December 2020 to June 2021 were collected retrospectively. The vascular recanalization after EVT was assessed by the modified thrombolysis in cerebral infarction (mTICI) score. Efficacy outcomes were assessed with initial and postprocedural Pediatric National Institutes of Health Stroke Scale (PedNIHSS) score, and the modified Rankin scale (mRS) score at 3 and 6 months after treatment. Safety assessments included perioperative complications and intracranial hemorrhage post-treatment. Results: A total of 5 EVT treatment were performed on 4 children with AIS, of whom 3 were male. The age of onset was 4.6, 13.8, 7.8, 8.0, 8.9 years, respectively. The time from symptom onset to initiation of EVT was 19.0, 25.0, 22.0, 4.0, 16.5 hours, respectively and all patients achieved successful recanalization of the vessel after EVT (mTICI≥2b). The PedNIHSS score was 39, 14, 25, 39, 24 before treatment and decreased to 8, 1, 12, 39, 5 at discharge. All the procedures were performed with no perioperative complications. Only 1 patient with congenital heart disease had a recurrent AIS with malignant brain oedema and brain hernia. Although the occluded vessels were successfully recanalized,the symptoms were not improved and this patient died after treatment abandonment. The other 3 patients achieved good recovery at 6 months postoperatively. The mRS score of 3 patients was 3, 1, 2 at 3 months after EVT and decreased to 2, 1, 1 at 6 months. Conclusion: EVT treatment may be feasible and safe for pediatric AIS due to large vessel occlusion even when the treatment was initiated 6 hours post stroke, but children with heart disease may have a dismal prognosis.
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Affiliation(s)
- J J Cao
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - Q Di
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - G Shen
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - S L Li
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - C H Chen
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - Y Xiong
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - Y H Jiao
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
| | - X F Guo
- Department of Intervention & Hemangioma, Children's Hospital, Capital Institute of Pediatrics, Beijing 100020, China
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Shen G, Zhao D, Zeng Y. Backpropagation with biologically plausible spatiotemporal adjustment for training deep spiking neural networks. Patterns (N Y) 2022; 3:100522. [PMID: 35755868 PMCID: PMC9214320 DOI: 10.1016/j.patter.2022.100522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 03/29/2022] [Accepted: 05/06/2022] [Indexed: 11/21/2022]
Abstract
The spiking neural network (SNN) mimics the information-processing operation in the human brain. Directly applying backpropagation to the training of the SNN still has a performance gap compared with traditional deep neural networks. To address the problem, we propose a biologically plausible spatial adjustment that rethinks the relationship between membrane potential and spikes and realizes a reasonable adjustment of gradients to different time steps. It precisely controls the backpropagation of the error along the spatial dimension. Secondly, we propose a biologically plausible temporal adjustment to make the error propagate across the spikes in the temporal dimension, which overcomes the problem of the temporal dependency within a single spike period of traditional spiking neurons. We have verified our algorithm on several datasets, and the experimental results have shown that our algorithm greatly reduces network latency and energy consumption while also improving network performance.
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Affiliation(s)
- Guobin Shen
- Research Center for Brain-Inspired Intelligence, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100190, China
| | - Dongcheng Zhao
- Research Center for Brain-Inspired Intelligence, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Yi Zeng
- Research Center for Brain-Inspired Intelligence, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
- National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
- School of Future Technology, University of Chinese Academy of Sciences, Beijing 100190, China
- School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100190, China
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Zhou JG, Yang J, Wang H, Wong AH, Tan F, Chen X, He S, Shen G, Wang YJ, Frey B, Fietkau R, Hecht M, Ma H, Gaipl U. 60P Machine learning based on blood biomarkers predicts fast progression in advanced NSCLC patients treated with immunotherapy. Ann Oncol 2022. [DOI: 10.1016/j.annonc.2022.02.069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
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8
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Zhang Z, Ren H, Shen G, Zhao W, Shang Q, Yu X, Lu Y, Yu P, Zhang Y, Tang J, Liang D, Jiang X. IGF-1R/β-catenin signaling axis is implicated in streptozotocin exacerbating bone impairment in ovariectomized rats. Climacteric 2020; 24:179-186. [PMID: 33000666 DOI: 10.1080/13697137.2020.1816956] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
OBJECTIVE The aim of this study was to investigate the role of the insulin-like growth factor-1 receptor (IGF-1R)/β-catenin signaling axis in bone impairment induced by hyperglycemia in ovariectomized rats. METHODS Rats were divided into four groups. The sham group received sham operation and a single intraperitoneal administration of vehicle. The ovariectomy (OVX) group was subjected to bilateral OVX and vehicle injection. The streptozotocin (STZ) group received sham operation and a single STZ injection to induce hyperglycemia. The OVX + STZ group received bilateral OVX and a single STZ injection. Dual-energy X-ray absorptiometry measurement, bone biomechanics test, micro-computed tomography scan, and hematoxylin-eosin staining were performed to evaluate bone alteration in this model. The expression of relevant signals including IGF-1R, glycogen synthase kinase-3β (GSK-3β), and β-catenin were examined by quantitative real-time polymerase chain reaction and western blot. RESULTS The OVX, STZ, and OVX + STZ groups induced bone loss, attenuated bone strength, and impaired microarchitecture compared with the sham group, respectively. Compared with OVX, more serious bone damage was found in the OVX + STZ group, which showed enhanced phosphorylation of IGF-1R, GSK-3β, and β-catenin. CONCLUSION OVX plus STZ induced more serious bone impairment than OVX alone, which involves the IGF-1R/β-catenin signaling axis in the pathogenesis. This may provide a potential target for treatment of postmenopausal diabetic osteoporosis.
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Affiliation(s)
- Z Zhang
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China.,Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - H Ren
- Department of Spinal Surgery, The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China
| | - G Shen
- Department of Spinal Surgery, The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China
| | - W Zhao
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China.,Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Q Shang
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China.,Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - X Yu
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China.,Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Y Lu
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - P Yu
- The First Clinical School, Guangzhou University of Chinese Medicine, Guangzhou, China.,Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Y Zhang
- School of Basic Medicine, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - J Tang
- Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - D Liang
- Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - X Jiang
- Lingnan Medical Research Center, Guangzhou University of Chinese Medicine, Guangzhou, China.,Department of Spinal Surgery, The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China
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9
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Zhao DL, Shen G. Verification of expressions of lncRNA FOXCUT in gastric adenocarcinoma patients and its effects on cell biological function based on TCGA database. Eur Rev Med Pharmacol Sci 2020; 23:6139-6147. [PMID: 31364114 DOI: 10.26355/eurrev_201907_18427] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE This study aimed to investigate expressions of lncRNA FOXCUT in gastric adenocarcinoma patients and its effects on the cell biological function. PATIENTS AND METHODS Expressions and survival of lncRNA FOXCUT in gastric adenocarcinoma patients (GA) in the Cancer Genome Atlas (TCGA) database were collected. Fifty patients with GA treated in our hospital (patient group) and another 50 contemporaneous normal people (normal group) were collected. Expressions of lncRNA FOXCUT in GES1, SNU-5, HGC-27, SGC-7901, and AGS cells were detected. Also, si-lncRNA FOXCUT and si-NC sequences were transfected to SGC-7901. Si-RNA and si-NC groups were constructed in AGS cells. QRT-PCR was used to detect expressions of lncRNA FOXCUT in samples. MTT, transwell, and flow cytometry were used to detect the proliferation, invasion, and apoptosis of transfected cells. Patients were followed up for 5 years to observe their survival. RESULTS Expressions of lncRNA FOXCUT in cancer tissues of GA patients in TCGA database were significantly increased (p<0.001). The survival rate of patients with low expressions of lncRNA FOXCUT was significantly increased (p=0.017, p=0.047). LncRNA FOXCUT is closely related to patients' tumor diameter, lymph node metastasis, TNM staging, and differentiation degree (p<0.05). LncRNA FOXCUT has high clinical value in disease diagnosis. Multivariate Cox regression analysis found that tumor diameter, lymph node metastasis, and lncRNA FOXCUT were independent prognostic factors. Compared with GES1, expressions of lncRNA FOXCUT in GA cells increased significantly (p<0.05), the proliferation and invasion ability of si-RNA group decreased significantly (p<0.05) compared with si-NC group, and the apoptosis rate of si-RNA group was significantly lower than that of si-NC group (p<0.05). CONCLUSIONS We showed that the inhibition of the expressions of lncRNA FOXCUT can reduce the proliferation and invasion of GA cells and increase apoptosis, which can be used as a potential therapeutic target for GA.
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Affiliation(s)
- D-L Zhao
- Department of Gastrointestinal Surgery, Zhuji Affiliated Hospital of Wenzhou Medical University, Shaoxing, P.R. China.
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10
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Long W, Wu J, Shen G, Zhang H, Liu H, Xu Y, Gu J, Jia L, Lin Y, Xia Q. Estrogen-related receptor participates in regulating glycolysis and influences embryonic development in silkworm Bombyx mori. Insect Mol Biol 2020; 29:160-169. [PMID: 31566836 DOI: 10.1111/imb.12619] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 08/04/2019] [Accepted: 09/03/2019] [Indexed: 06/10/2023]
Abstract
Estrogen-related receptors (ERRs) play indispensable roles in development, energy metabolism, and cancers and are metabolic switches in Drosophila. However, the mechanism underlying their metabolic role is unknown in insects. This study analysed the expression profiles of Bombyx mori ERR (BmERR), hexokinase (BmHK), pyruvate kinase (BmPK) and phosphofructokinase (BmPFK) during embryonic development. The expression of BmERR tended to be similar to that of the other genes. We observed a regulatory association between BmERR and glycolytic rate-limiting enzymes by BmERR overexpression, RNA interference (RNAi), and ERR inhibitors in B. mori embryo cells. Subsequently, ERR cis-regulation elements (ERREs) were predicted and identified in the BmPFK promoter. Transfection assays, electrophoretic mobility shift assays and chromatin immunoprecipitation showed that BmERR can bind to one of these elements to regulate the expression of BmPFK. ERREs were also predicted in the BmHK and BmPK promoters. In the eggs, the expression of glycolytic rate-limiting enzyme genes was suppressed when the expression of BmERR was interference by double-stranded BmERR, the glucose levels also was increased. Meanwhile, the development of silkworm embryos was delayed by about 1 day. These results indicate that BmERR can bind to the ERREs of glycolytic gene promoters and regulate the expression of glycolytic genes, ultimately affecting embryonic development in silkworms.
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Affiliation(s)
- W Long
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - J Wu
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - G Shen
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
| | - H Zhang
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - H Liu
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - Y Xu
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - J Gu
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - L Jia
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
| | - Y Lin
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
| | - Q Xia
- Biological Science Research Center Southwest University, Chongqing, China
- Chongqing Key Laboratory of Sericulture Science, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
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11
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Shen G, Huang JY, Huang YQ, Feng YQ. The Relationship between Telomere Length and Cancer Mortality: Data from the 1999-2002 National Healthy and Nutrition Examination Survey (NHANES). J Nutr Health Aging 2020; 24:9-15. [PMID: 31886802 DOI: 10.1007/s12603-019-1265-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
OBJECTIVES The association between telomeres length (TL) and cancer mortality is uncertain. We tested the hypotheses that long TL are associated with reduced cancer mortality. DESIGN Prospective cohort study. SETTING the National Health and Nutrition Survey (NHANES, 1999-2002). PARTICIPANTS The analytic sample included adults (n = 7183) who had TL measurements. MEASUREMENTS DNA was obtained via blood samples. Telomere length was assessed using the quantitative polymerase chain reaction method. RESULTS During follow-up (0.08-12.7 person-years, median = 9.5 years), we observed 195 participants had cancer as causes of death. TL was negatively corelated with age, body mass index (BMI), systolic blood pressure (SBP), C-reactive protein (CRP), race, diabetes, hypertension, cardiovascular diseases (CVD) and cancer mortality, conversely, positively corelated with alcohol use, but not related to diastolic blood pressure (DBP) and smoking. Kaplan-Meier analysis revealed that TL was significantly associated with cancer mortality (log-rank, P <0.001). CONCLUSIONS Our study expands upon previous evidence of a relationship between TL and cancer mortality. TL may be a useful tool for evaluating risk of cancer mortality in American adults.
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Affiliation(s)
- G Shen
- YingQing Feng, Department of Cardiology, Guangdong Cardiovascular Institute, Hypertension Research Laboratory, Guangdong Provincial People's Hospital, Guangdong Provincial Key Laboratory of Coronary Heart Disease Prevention, Guangdong Academy of Medical Sciences, School of Medicine, South China University of Technology, 510080 Guangzhou, China,
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12
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Si J, Li H, Lu C, Shen G. Identification and investigation on the foxc1-regulated mrnas and mirnas in osteogenic differentiation of mouse preosteoblastic cells. Int J Oral Maxillofac Surg 2019. [DOI: 10.1016/j.ijom.2019.03.842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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13
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Si J, Shen H, Shi J, Shen G. Will inferior alveolar nerve injury during bilateral sagittal split ramus osteotomy impair the bone healing of human mandible? Int J Oral Maxillofac Surg 2019. [DOI: 10.1016/j.ijom.2019.03.210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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14
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Zhao C, Miao J, Shen G, Li J, Shi M, Zhang N, Hu G, Chen X, Hu X, Wu S, Chen J, Shao X, Wang L, Han F, Mai H, Chua MLK, Xie C. Anti-epidermal growth factor receptor (EGFR) monoclonal antibody combined with cisplatin and 5-fluorouracil in patients with metastatic nasopharyngeal carcinoma after radical radiotherapy: a multicentre, open-label, phase II clinical trial. Ann Oncol 2019; 30:637-643. [PMID: 30689735 DOI: 10.1093/annonc/mdz020] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND We conducted a single-arm phase II trial to evaluate the efficacy and adverse effects (AEs) of an anti-epidermal growth factor receptor monoclonal antibody, nimotuzumab, combined with cisplatin and 5-fluorouracil (PF) as first-line treatment in recurrent metastatic nasopharyngeal carcinoma after radical radiotherapy. METHODS Patients who met the eligibility criteria were recruited from ten institutions (ClinicalTrials.gov; NCT01616849). A Simon optimal two-stage design was used to calculate the sample size. All patients received weekly nimotuzumab (200 mg) added to cisplatin (100 mg/m2 D1) and 5-fluorouracil (4 g/m2 continuous infusion D1-4) every 3-weekly for a maximum of six cycles. Primary end point was objective response rate (ORR). Secondary end points included disease control rate (DCR), progression-free survival (PFS), overall survival (OS) and AEs. RESULTS A total of 35 patients were enrolled (13 in stage 1 and 22 in stage 2). Overall ORR and DCR were 71.4% (25/35) and 85.7% (30/35), respectively. Median PFS and OS were 7.0 (95% CI 5.8-8.2) months and 16.3 (95% CI 11.4-21.3) months, respectively. Unplanned exploratory analyses suggest that patients who received ≥2400 mg nimotuzumab and ≥4 cycles of PF had superior ORR, PFS and OS than those who did not (88.9% versus 12.5%, P < 0.001; 7.4 versus 2.7 months, P = 0.081; 17.0 versus 8.0 months, P = 0.202). Favourable subgroups included patients with lung metastasis [HROS 0.324 (95% CI 0.146-0.717), P = 0.008] and disease-free interval of >12 months [HROS 0.307 (95% CI 0.131-0.724), P = 0.004], but no difference was observed for metastatic burden. The only major grade 3/4 AE was leukopenia (62.9%). CONCLUSION Combination nimotuzumab-PF chemotherapy demonstrates potential efficacy, and is well tolerated as first-line chemotherapy regimen in recurrent metastatic nasopharyngeal carcinoma.
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Affiliation(s)
- C Zhao
- Department of Radiation and Medical Oncology, Hubei Key Laboratory of Tumor Biological Behaviors, Hubei Cancer Clinical Study Centre, Zhongnan Hospital of Wuhan University, Wuhan; Department of Nasopharyngeal Carcinoma, Sun Yat-sen University Cancer Centre, State Key Laboratory of Oncology in South China, Collaborative Innovation centre of Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangzhou
| | - J Miao
- Department of Nasopharyngeal Carcinoma, Sun Yat-sen University Cancer Centre, State Key Laboratory of Oncology in South China, Collaborative Innovation centre of Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangzhou
| | - G Shen
- Department of Radiotherapy, Cancer Center of Guangzhou Medical University, Guangzhou; Department of Radiation Oncology, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou
| | - J Li
- Department of Radiation Oncology, Jiangxi Province Tumour Hospital, Nanchang
| | - M Shi
- Department of Radiation Oncology, Xijing Hospital, Fourth Military Medical University, Xi'an
| | - N Zhang
- Department of Radiation Oncology, The First People's Hospital of Foshan, Foshan
| | - G Hu
- Department of Oncology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan
| | - X Chen
- Department of Radiation Oncology, Zhejiang Cancer Hospital, Hangzhou
| | - X Hu
- Department of Radiation Oncology, The First People's Hospital of Foshan, Foshan
| | - S Wu
- Department of Radiation Oncology, Hangzhou Cancer Hospital, Hangzhou
| | - J Chen
- Departments of Radiation Oncology, People's Hospital of Guangxi Zhuang Autonomous Region, Nanning
| | - X Shao
- Department of Radiotherapy, Cancer Center of Guangzhou Medical University, Guangzhou
| | - L Wang
- Department of Nasopharyngeal Carcinoma, Sun Yat-sen University Cancer Centre, State Key Laboratory of Oncology in South China, Collaborative Innovation centre of Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangzhou
| | - F Han
- Department of Radiation Oncology, Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center of Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangzhou
| | - H Mai
- Department of Nasopharyngeal Carcinoma, Sun Yat-sen University Cancer Centre, State Key Laboratory of Oncology in South China, Collaborative Innovation centre of Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangzhou
| | - M L K Chua
- Division of Radiation Oncology, Division of Medical Sciences, National Cancer Centre Singapore; Oncology Academic Programme, Duke-NUS Medical School, Singapore.
| | - C Xie
- Department of Radiation and Medical Oncology, Hubei Key Laboratory of Tumor Biological Behaviors, Hubei Cancer Clinical Study Centre, Zhongnan Hospital of Wuhan University, Wuhan.
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Abstract
AIMS The underlying mechanisms of vitamin D receptor (VDR) and osteoprotegerin (OPG) genetic variation associated with bone mineral density and osteoporosis remain uncertain. This study aimed to investigate the association of VDR and OPG gene polymorphism as well as gene-gene interaction and their haplotype combination with the risk of osteoporosis. METHODS Polymerase chain reaction restriction fragment length polymorphism was carried out for single nucleotide polymorphism (SNP) detection. Generalized multifactor dimension reduction (GMDR) is used to identify the interaction. SHEsis software evaluated the haplotype and logistic regression was performed to assess the association between the SNPs within the VDR and OPG genes and osteoporosis. RESULTS The risk of osteoporosis in the VDR-rs2228570 polymorphism T-allele carriers was significantly higher than that in CC (CT/TT versus CC) individuals (adjusted odds ratio [OR] [95% confidence interval (CI)] = 1.76 [1.33-2.22]). The risk of osteoporosis was also higher in the G-allele carrier of the OPG-rs3102735 polymorphism than in individuals with the AA genotype (AG/GG vs. AA) (adjusted OR [95% CI] = 1.65 [1.27-2.14]). However, after adjusting for sex, age, and waist circumference covariates, no significant association of VDR-rs17879735 and OPG-rs2073618 with the osteoporosis risk was revealed. The GMDR method identified that gene-gene interactions were significant, but not for gene/AO interaction. Haplotypes were analyzed with SHEsis software. We did not detect a high-risk haplotype combination associated with osteoporosis. CONCLUSIONS Both VDR-rs2228570-T and OPG-rs3102735-G and their interactions are related to the increased risk of osteoporosis.
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Affiliation(s)
- F Wu
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
| | - D Zhou
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
| | - G Shen
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
| | - Y Cui
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
| | - Q Lv
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
| | - F Wei
- a Department of Gynecology and Obstetrics , Beijing Hospital, National Center of Gerontology , Beijing , China
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16
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He Y, Li J, Mao W, Zhang D, Liu M, Shan X, Zhang B, Zhu C, Shen J, Deng Z, Wang Z, Yu W, Chen Q, Guo W, Su P, Lv R, Li G, Li G, Pei B, Jiao L, Shen G, Liu Y, Feng Z, Su Y, Xie Y, Di W, Liu X, Yang X, Wang J, Qi J, Liu Q, Han Y, He J, Cai J, Zhang Z, Zhu F, Du D. HLA common and well-documented alleles in China. HLA 2018; 92:199-205. [DOI: 10.1111/tan.13358] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 06/22/2018] [Accepted: 07/29/2018] [Indexed: 11/29/2022]
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17
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Abstract
Hemifacial microsomia (HFM) is a common congenital malformation of the craniofacial region. There are 3 possible pathogenic models of HFM—vascular abnormality and hemorrhage in the craniofacial region, damage to Meckel’s cartilage, and the abnormal development of cranial neural crest cells—and the most plausible hypothesis is the vascular abnormality and hemorrhage model. These 3 models are interrelated, and none of them is completely concordant with all the variable manifestations of HFM. External environmental factors (e.g., thalidomide, triazene, retinoic acid, and vasoactive medications), maternal intrinsic factors (e.g., maternal diabetes), and genetic factors (e.g., the recently reported mutations in OTX2, PLCD3, and MYT1) may lead to HFM through ≥1 of these pathogenic processes. Whole genome sequencing to identify additional pathogenic variants, biological functional studies to understand the exact molecular mechanisms, and additional animal model and clinical studies with large stratified samples to elucidate the pathogenesis of HFM will be necessary. Small-molecule drugs, as well as CRISPR/CAS9-based genetic interventions, for the prevention and treatment of HFM may also be a future research hotspot.
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Affiliation(s)
- Q. Chen
- Department of Oral and Craniomaxillofacial Surgery, Shanghai Ninth People’s Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China
| | - Y. Zhao
- Department of Oral and Craniomaxillofacial Surgery, Shanghai Ninth People’s Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China
| | - G. Shen
- Department of Oral and Craniomaxillofacial Surgery, Shanghai Ninth People’s Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China
| | - J. Dai
- Department of Oral and Craniomaxillofacial Surgery, Shanghai Ninth People’s Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China
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18
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Shen G, Wu J, Han C, Liu H, Xu Y, Zhang H, Lin Y, Xia Q. Oestrogen-related receptor reduces vitellogenin expression by crosstalk with the ecdysone receptor pathway in female silkworm, Bombyx mori. Insect Mol Biol 2018; 27:454-463. [PMID: 29603466 DOI: 10.1111/imb.12385] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Oestrogen-related receptor (ERR) is involved in oestrogen receptor (ER) signalling pathways owing to its similarity to ER in terms of domain structure and co-activator and response elements. Although insects lack ER, they harbour an ERR gene that is thought to modulate metabolism and energy conversion via an unknown mechanism. The present study investigated the function of ERR in insects using female silkworm (Bombyx mori, Bm). We found that the expression of B. mori vitellogenin (BmVg) and B. mori ERR (BmERR) in the fat bodies of female silkworms at different stages of development exhibited alternating patterns, and RNA interference of BmERR in females induced BmVg transcription, resulting in an increase in egg weight relative to the control. Furthermore, BmERR was found to be involved in regulating the transcription of BmVg through an oestrogen-related receptor response element (ERRE) in the promoter of the BmVg gene, as demonstrated by electrophoretic mobility shift assay, cell transfection assay and chromatin immunoprecipitation. In summary, our results indicate that BmERR bound to the ERRE motif in the BmVg promoter reducing the expression of BmVg in the fat body of the female silkworm. To our surprise, the ERRE also showed the ability to bind the ecdysone receptor (BmEcR) and ultraspiracle complex. Thus, we surmise that ERR participates in steroid hormone signalling by engaging in crosstalk with the ER pathway in vertebrates and with the EcR pathway in insects.
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Affiliation(s)
- G Shen
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
| | - J Wu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - C Han
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - H Liu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Y Xu
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - H Zhang
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
| | - Y Lin
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
| | - Q Xia
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Chongqing, China
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Ni J, El-Ansary D, Heiberg J, Shen G, You Q, Gao Y, Liu K, Ke H, Royse CF. Validation of a revised Mandarin Chinese language version of the Postoperative Quality of Recovery Scale. Anaesth Intensive Care 2018; 46:278-289. [PMID: 29716486 DOI: 10.1177/0310057x1804600305] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The aim of the study was to validate a revised Mandarin version of the Postoperative Quality of Recovery Scale (PostopQRS) and to apply the revised version in a Chinese population. In a prospective design, bilingual volunteers completed the scale at baseline, day one, day seven, and day 14 in both languages, with the order of language and parallel forms randomised. In addition, lung cancer patients undergoing open or video-assisted thoracoscopic surgery (VATS) completed the Mandarin version prior to surgery, day one, day three, day seven, day 14, one month, and three months postoperatively. Sixty-eight volunteers participated in the validation part of the study and in the clinical application, 93 lung cancer patients were included. The scores in the Mandarin version were equal to the English version in all domains at all timepoints including the word generation task, when the Mandarin morpheme was included in any part of the Mandarin word. However, Mandarin scores were lower in the word generation task if the morpheme was only included in the first part of the word. In addition, the Mandarin version was able to identify lower rates of overall recovery (<i>P</i> <0.01), nociceptive (<i>P</i> <0.01), emotive (<i>P</i> <0.01), and activities of daily living recovery (<i>P</i>=0.02) after open surgery compared to after VATS. The revised Mandarin version is equivalent to the English version for the cognitive domain, if morpheme substitution for the word generation task is allowed as any part of the word, and it is able to discriminate quality of recovery in Chinese patients.
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Affiliation(s)
- J Ni
- Associate Professor of Rehabilitation, Department of Rehabilitation Medicine, The Affiliated Hospital of Nantong University; Nantong University; Nantong, China
| | - D El-Ansary
- Associate Professor and Director of Physiotherapy, Faculty of Health Sciences, Swinburne University; Honorary Senior Research Fellow, Department of Surgery, School of Medicine, The University of Melbourne; Melbourne, Victoria
| | - J Heiberg
- Research Fellow, Department of Anaesthesia and Pain Management, Royal Melbourne Hospital; Department of Surgery, University of Melbourne; Melbourne, Victoria
| | - G Shen
- Professor, Department of Rehabilitation Medicine, The Affiliated Hospital of Nantong University; Department of Rehabilitation Medicine, Nantong University; Nantong, China
| | | | | | | | | | - C F Royse
- Consultant Anaesthetist, Department of Anaesthesia and Pain Management, Royal Melbourne Hospital; Professor, Department of Surgery, University of Melbourne; Melbourne, Victoria
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Ni J, Mei C, Yu S, Shen G, Lu X, Li J. Effects of physiological ischemic training on post-stroke neuroprotection and angiogenesis in adult rats. Ann Phys Rehabil Med 2018. [DOI: 10.1016/j.rehab.2018.05.424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Su L, Shen G, Sun L. Role of CXCL1 and CCL2 in patients with severe traumatic brain injury. Ann Phys Rehabil Med 2018. [DOI: 10.1016/j.rehab.2018.05.534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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22
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Shen G, Tan S, Yang Q, Sun XY, Sun XW, Wang X. The prevalence of species-habitat association is not adequate for justifying the niche differentiation hypothesis. COMMUNITY ECOL 2018. [DOI: 10.1556/168.2018.19.1.5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- G. Shen
- Tiantong National Station for Forest Ecosystem Research, Zhejiang, Ningbo, 315114, China
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
- Shanghai Institute of Pollution Control and Ecological Security, 1515 North Zhongshan Rd. (No.2), Shanghai 200092, China
| | - S. Tan
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - Q. Yang
- Tiantong National Station for Forest Ecosystem Research, Zhejiang, Ningbo, 315114, China
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - X. Y. Sun
- Tiantong National Station for Forest Ecosystem Research, Zhejiang, Ningbo, 315114, China
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - X. W. Sun
- Tiantong National Station for Forest Ecosystem Research, Zhejiang, Ningbo, 315114, China
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
| | - X. Wang
- Tiantong National Station for Forest Ecosystem Research, Zhejiang, Ningbo, 315114, China
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China
- Shanghai Institute of Pollution Control and Ecological Security, 1515 North Zhongshan Rd. (No.2), Shanghai 200092, China
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Shen G, Li S, Cui W, Liu S, Liu Q, Yang Y, Gross M, Li W. Stabilization of warfarin-binding pocket of VKORC1 and VKORL1 by a peripheral region determines their different sensitivity to warfarin inhibition. J Thromb Haemost 2018; 16:1164-1175. [PMID: 29665197 PMCID: PMC6231229 DOI: 10.1111/jth.14127] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Indexed: 11/30/2022]
Abstract
Essentials VKORL1 and VKORC1 have a similar overall structure and warfarin-binding pocket. A peripheral region stabilizing this pocket controls warfarin sensitivity of the VKOR paralogs. A human single nucleotide polymorphism in this region renders VKORL1 sensitive to warfarin. A group of warfarin-resistant mutations in VKORC1 acts by disrupting peripheral interactions. SUMMARY Background The human genome encodes two paralogs of vitamin-K-epoxide reductase, VKORC1 and VKORL1, that support blood coagulation and other vitamin-K-dependent processes. Warfarin inhibits both enzymes, but VKORL1 is relatively resistant to warfarin. Objectives To understand the difference between VKORL1 and VKORC1, and the cause of warfarin-resistant (WR) mutations in VKORC1. Methods We performed systematic mutagenesis and analyzed warfarin responses with a cell-based activity assay. Mass spectrometry analyses were used to detect cellular redox state. Results VKORC1 and VKORL1 adopt a similar intracellular redox state with four-transmembrane-helix topology. Most WR mutations identified in VKORC1 also confer resistance in VKORL1, indicating that warfarin inhibits these paralogs at a common binding site. A group of WR mutations, distant from the warfarin-binding site, show significantly less resistance in VKORL1 than in VKORC1, implying that their different warfarin responses are determined by peripheral interactions. Remarkably, we identify a critical peripheral region in which single mutations, Glu37Lys or His46Tyr, drastically increase the warfarin sensitivity of VKORL1. In the background of these warfarin-sensitive VKORL1 mutants, WR mutations showing relative less resistance in wild-type VKORL1 become much more resistant, suggesting a structural conversion to resemble VKORC1. At this peripheral region, we also identified a human single nucleotide polymorphism that confers warfarin sensitivity of VKORL1. Conclusions Peripheral regions of VKORC1 and VKORL1 primarily maintain the stability of their common warfarin-binding pocket, and differences of such interactions determine their relative sensitivity to warfarin inhibition. This new model also explains most WR mutations located at the peripheral regions of VKORC1.
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Affiliation(s)
- G Shen
- Institute of Hemostasis and Thrombosis, College of Medicine, Henan University of Science and Technology, Luoyang, Henan, China
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
| | - S Li
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
| | - W Cui
- Department of Chemistry, Washington University in St. Louis, St. Louis, MO, USA
| | - S Liu
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
| | - Q Liu
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
- Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Y Yang
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
| | - M Gross
- Department of Chemistry, Washington University in St. Louis, St. Louis, MO, USA
| | - W Li
- Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA
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Zhang Y, Feng K, Hu J, Shi L, Wei P, Xu Z, Shen G, Li M, Xu Q, He L. A microRNA-1 gene, tci-miR-1-3p, is involved in cyflumetofen resistance by targeting a glutathione S-transferase gene, TCGSTM4, in Tetranychus cinnabarinus. Insect Mol Biol 2018; 27:352-364. [PMID: 29424082 DOI: 10.1111/imb.12375] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
microRNA-1 (miR-1) is a well-studied conservative microRNA (miRNA) involved in immune responses in mammals and insects. However, little is known about its role in pesticide resistance in arthropods. In this study, we found that a microRNA belong to miR-1 family (tci-miR-1-3p) was significantly down-regulated in a cyflumetofen-resistant strain (CYR) of Tetranychus cinnabarinus compared with its homologous susceptible strain (SS), indicating an involvement of miR-1 in cyflumetofen resistance in mites. One glutathione S-transferase (GST) gene (TCGSTM4, a mu class GST gene), a candidate target gene of tci-miR-1-3p, was found to be significantly down-regulated when tci-miR-1-3p was over-expressed. The specific interaction between tci-miR-1-3p and the target sequence in the 3' untranslated region of TCGSTM4 was confirmed. A decrease or increase in tci-miR-1-3p abundance through feeding miRNA inhibitors or mimics significantly increased or decreased TCGSTM4 expressions at the mRNA and protein levels, respectively. In addition, an over-expression of tci-miR-1-3p resulted in a decrease in the tolerance of T. cinnabarinus to cyflumetofen in both SS and CYR strains, and vice versa. After decreasing TCGSTM4 transcription via RNA interference, T. cinnabarinus became more sensitive to cyflumetofen in both resistant and susceptible mites, and the change in mortality was greater in CYR than that in SS. Moreover, the recombinant TCGSTM4 could significantly decompose cyflumetofen, indicating that TCGSTM4 is a functional gene responsible for cyflumetofen resistance in mites.
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Affiliation(s)
- Y Zhang
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - K Feng
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - J Hu
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - L Shi
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - P Wei
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - Z Xu
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - G Shen
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
| | - M Li
- Department of Entomology, University of California, Riverside, CA, USA
| | - Q Xu
- Department of Biology, Abilene Christian University, Abilene, TX, USA
| | - L He
- Academy of Agricultural Sciences, College of Plant Protection, Southwest University, Chongqing, China
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Chu F, Feng Q, Hu Z, Shen G. Appropriate cyclic tensile strain promotes biological changes of cranial base synchondrosis chondrocytes. Orthod Craniofac Res 2018; 20:177-182. [PMID: 28727318 DOI: 10.1111/ocr.12194] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/30/2017] [Indexed: 01/14/2023]
Abstract
OBJECTIVES This study was designed to clarify biological changes of cranial base synchondrosis chondrocytes (CBSCs) upon cyclic tensile strain (CTS) loading which simulated orthopaedic mechanical protraction on cranial base synchondroses (CBS). MATERIAL AND METHODS A two-step digestion method was used to isolate CBSCs obtained from 1-week-old Sprague Dawley rats. Immunohistochemical staining of type II collagen and Sox9 was conducted to identify chondrocytes. A CTS of 1 Hz and 10% elongation was applied to the second passage of CBSCs by FX-5000™ Tension System for 24 hours. The control group kept static at the same time. The expression levels of extracellular matrix (Acan, Col1a1, Col2a1 and Col10a1) and key regulatory factors (Sox9, Ihh and PTHrP) were detected by quantitative real-time RT-PCR. RESULTS Positive staining of type II collagen and Sox9 was detected in the isolated CBSCs. The relative expression level of Acan, Col2a1, Col10a1, Sox9 and Ihh in the CTS-loading group was 1.85-fold, 2.19-fold, 1.53-fold, 6.62-fold, and 1.39-fold, respectively, as much as that in the control group, which had statistical significance (P<.05). There was no statistical difference (P>.05) in the expression of Col1a1 and PTHrP. CONCLUSIONS A CTS of 1 Hz and 10% elongation for 24 hours had positive effects on chondrocyte proliferation, phenotype maintenance and cartilage matrix synthesis.
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Affiliation(s)
- F Chu
- Department of Orthodontics, College of Stomatology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - Q Feng
- Department of Orthodontics, College of Stomatology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - Z Hu
- Department of Orthodontics, College of Stomatology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, China
| | - G Shen
- Department of Orthodontics, College of Stomatology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, China
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26
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Tian Y, Guo XS, Nan J, Wang XL, Shen G. [Effect of treatment of infant parotid hemangioma with no response to oral propranolol]. Zhonghua Kou Qiang Yi Xue Za Zhi 2018; 53:49-51. [PMID: 29972964 DOI: 10.3760/cma.j.issn.1002-0098.2018.01.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Hemangioma is the most common vascular tumor in infantile period, and propranolol is the first choice, but there are still a few patients with poor curative effect. Seven cases of infant parotid hemangioma with no response to oral propranolol were treated with transcatheter arterial sclerosing embolization combined with cortisol and satisfactory results achievod. The treatment and efficacy are disccused in this paper.
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Affiliation(s)
- Y Tian
- Department of Burn & Plastic Surgery, Shanxi Children's Hospital, Taiyuan 030001, China
| | - X S Guo
- Department of Burn & Plastic Surgery, Shanxi Children's Hospital, Taiyuan 030001, China
| | - J Nan
- Department of Burn & Plastic Surgery, Shanxi Children's Hospital, Taiyuan 030001, China
| | - X L Wang
- Department of Burn & Plastic Surgery, Shanxi Children's Hospital, Taiyuan 030001, China
| | - G Shen
- Department of Intervention and Hemangioma, Guangzhou Women and Children Medical Center, Guangzhou 510623, China
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Affiliation(s)
- C Wan
- School of Professional Education and Executive Development, The Hong Kong Polytechnic University, Hung Hom, Hong Kong.
| | - G Shen
- Department of Building and Real Estate, The Hong Kong Polytechnic University, Hung Hom, Hong Kong.
| | - S Choi
- School of Professional Education and Executive Development, The Hong Kong Polytechnic University, Hung Hom, Hong Kong.
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28
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Huang Z, Sun B, Wu S, Meng X, Cong Y, Shen G, Song S. A Nomogram for Predicting Survival in Patients With Breast Cancer Brain Metastasis. Int J Radiat Oncol Biol Phys 2017. [DOI: 10.1016/j.ijrobp.2017.06.634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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29
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Pan T, Shen G. LET THE SUNSET GLOW: PRACTICING QUASI-VOLUNTEERISM IN SHANGHAI’S AGING COMMUNITIES (1998–2016). Innov Aging 2017. [DOI: 10.1093/geroni/igx004.806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. Pan
- The Institute of Anthropological and Ethnological Studies, Fudan University, Shanghai, Shanghai, China
| | - G. Shen
- The Institute of Anthropological and Ethnological Studies, Fudan University, Shanghai, Shanghai, China
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30
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Shen G. BUILDING AN AGING IN PLACE COMMUNITY IN URBAN SHANGHAI: AN ETHNOGRAPHIC ASSESMENT OF CCHC MODEL. Innov Aging 2017. [DOI: 10.1093/geroni/igx004.1626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- G. Shen
- The Institute of Anthropological and Ethnological Studies, Fudan University, Shanghai, China
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31
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Li WX, Li G, Yao L, Shen G, Yang R, Qiu FW, Ma Y. Identification of a novel HLA-A allele, HLA-A*02:505, by sequence-based typing in a patient with tuberculosis. HLA 2017; 90:106-107. [PMID: 28378528 DOI: 10.1111/tan.13040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Revised: 03/17/2017] [Accepted: 03/17/2017] [Indexed: 11/29/2022]
Abstract
The novel allele HLA-A*02:505 was identified in a tuberculosis patient by human leukocyte antigen sequence-based typing.
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Affiliation(s)
- W-X Li
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - G Li
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - L Yao
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - G Shen
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - R Yang
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - F-W Qiu
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - Y Ma
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
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32
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Li WX, Chen L, Yang Y, Ma Y, Shen G. Description of the novel HLA-A allele, HLA-A*11:229, identified by sequence-based typing in a Chinese individual. HLA 2017; 90:111-112. [PMID: 28345815 DOI: 10.1111/tan.13026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Revised: 03/08/2017] [Accepted: 03/08/2017] [Indexed: 11/30/2022]
Abstract
HLA-A*11:229 differs from HLA-A*11:01:01:01 by 1 nucleotide exchange at position 556 (G > A) with an amino exchange.
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Affiliation(s)
- W-X Li
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, China
| | - L Chen
- Wuhan Institute of Dermatology and Venereology, Wuhan, China
| | - Y Yang
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, China
| | - Y Ma
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Blood Center of Wuhan, Wuhan, China
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33
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Zhang W, Aljekhedab F, Wang X, Fang Q, Shen G. Micromorphology study of bovine bone after ultrafast laser ablation. Int J Oral Maxillofac Surg 2017. [DOI: 10.1016/j.ijom.2017.02.751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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34
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Chen Y, Du W, Shen G, Zhuo S, Zhu X, Shen H, Huang Y, Su S, Lin N, Pei L, Zheng X, Wu J, Duan Y, Wang X, Liu W, Wong M, Tao S. Household air pollution and personal exposure to nitrated and oxygenated polycyclic aromatics (PAHs) in rural households: Influence of household cooking energies. Indoor Air 2017; 27:169-178. [PMID: 27008622 DOI: 10.1111/ina.12300] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 03/15/2016] [Indexed: 05/22/2023]
Abstract
Residential solid fuels are widely consumed in rural China, contributing to severe household air pollution for many products of incomplete combustion, such as polycyclic aromatic hydrocarbons (PAHs) and their polar derivatives. In this study, concentrations of nitrated and oxygenated PAH derivatives (nPAHs and oPAHs) for household and personal air were measured and analyzed for influencing factors like smoking and cooking energy type. Concentrations of nPAHs and oPAHs in kitchens were higher than those in living rooms and in outdoor air. Exposure levels measured by personal samplers were lower than levels in indoor air, but higher than outdoor air levels. With increasing molecular weight, individual compounds tended to be more commonly partitioned to particulate matter (PM); moreover, higher molecular weight nPAHs and oPAHs were preferentially found in finer particles, suggesting a potential for increased health risks. Smoking behavior raised the concentrations of nPAHs and oPAHs in personal air significantly. People who cooked food also had higher personal exposures. Cooking and smoking have a significant interaction effect on personal exposure. Concentrations in kitchens and personal exposure to nPAHs and oPAHs for households using wood and peat were significantly higher than for those using electricity and liquid petroleum gas (LPG).
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Affiliation(s)
- Y Chen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - W Du
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - G Shen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - S Zhuo
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - X Zhu
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - H Shen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - Y Huang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - S Su
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - N Lin
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - L Pei
- Institute of Population Research, Peking University, Beijing, China
| | - X Zheng
- Institute of Population Research, Peking University, Beijing, China
| | - J Wu
- Institute of Population Research, Peking University, Beijing, China
| | - Y Duan
- College of Resources and Environment, Shanxi Agricultural University, Shanxi, China
| | - X Wang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - W Liu
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - M Wong
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, Hong Kong Institute of Education, Hong Kong, China
| | - S Tao
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
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Abstract
Mandibular condylar cartilage is categorized as articular cartilage but markedly distinguishes itself in many biological aspects, such as its embryonic origin, ontogenetic development, post-natal growth mode, and histological structures. The most marked uniqueness of condylar cartilage lies in its capability of adaptive remodeling in response to external stimuli during or after natural growth. The adaptation of condylar cartilage to mandibular forward positioning constitutes the fundamental rationale for orthodontic functional therapy, which partially contributes to the correction of jaw discrepancies by achieving mandibular growth modification. The adaptive remodeling of condylar cartilage proceeds with the biomolecular pathway initiating from chondrogenesis and finalizing with osteogenesis. During condylar adaptation, chondrogenesis is activated when the external stimuli, e.g., condylar repositioning, generate the differentiation of mesenchymal cells in the articular layer of cartilage into chondrocytes, which proliferate and then progressively mature into hypertrophic cells. The expression of regulatory growth factors, which govern and control phenotypic conversions of chondrocytes during chondrogenesis, increases during adaptive remodeling to enhance the transition from chondrogenesis into osteogenesis, a process in which hypertrophic chondrocytes and matrices degrade and are replaced by bone. The transition is also sustained by increased neovascularization, which brings in osteoblasts that finally result in new bone formation beneath the degraded cartilage.
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Affiliation(s)
- G Shen
- Discipline of Orthodontics, Faculty of Dentistry, Sydney Dental Hospital, The University of Sydney, 2 Chalmers Street, Surry Hills, NSW 2010, Australia.
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36
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Shen G, Chen F, Lu Y, Zhang F, Yang B. An integrated device of electrodialytic membrane suppressor and charge detector for ion chromatography. Anal Chim Acta 2016; 943:131-135. [DOI: 10.1016/j.aca.2016.09.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Revised: 09/10/2016] [Accepted: 09/17/2016] [Indexed: 10/21/2022]
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37
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Shen G, Lu Y, Chen F, Zhang F, Yang B. Fabrication and evaluation of an electrodialytic carbonate eluent generator for ion chromatography. Talanta 2016; 159:143-147. [DOI: 10.1016/j.talanta.2016.06.015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Revised: 06/02/2016] [Accepted: 06/05/2016] [Indexed: 11/29/2022]
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38
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Shi L, Zhang J, Shen G, Xu Z, Xu Q, He L. Collaborative contribution of six cytochrome P450 monooxygenase genes to fenpropathrin resistance in Tetranychus cinnabarinus (Boisduval). Insect Mol Biol 2016; 25:653-665. [PMID: 27351452 DOI: 10.1111/imb.12251] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Cytochrome P450 monooxygenases (P450s), as an important family of detoxification enzymes, participate in the metabolism of agrochemicals in almost all agricultural pests and play important roles in the development of insecticide resistance. Two P450 genes (CYP389B1 and CYP392A26) were identified and their expression patterns were investigated in our previous study. In this study, four more P450 gene sequences (CYP391A1, CYP384A1, CYP392D11 and CYP392A28) from the Clan 2, Clan 3 and Clan 4 families were identified and characterized. Quantitative PCR analysis showed that these four P450 genes were highly expressed in a fenpropathrin-resistant (FeR) strain of Tetranychus cinnabarinus. In addition, their expressions were much more sensitive to fenpropathrin induction in the FeR strain than the susceptible strain. Gene-silencing experiments via double-stranded RNA feeding were carried out. The results showed that mRNA levels of these six P450 genes were reduced in the FeR strain and the activities of P450s were decreased. Consequently mite susceptibilities to fenpropathrin were increased. Interestingly, silencing all six P450 genes simultaneously had an even greater effect on resistance than silencing them individually. This study increases our understanding of the molecular mechanisms of insecticide detoxification, suggesting that the overexpression of these six P450 genes might play important roles in fenpropathrin resistance in T. cinnabarinus collaboratively.
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Affiliation(s)
- L Shi
- Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China
| | - J Zhang
- Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China
| | - G Shen
- Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China
| | - Z Xu
- Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China
| | - Q Xu
- Department of Biology, Abilene Christian University, Abilene, TX, USA
| | - L He
- Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing, China
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39
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Qiang W, Zhu YY, Shen G, Zou J. Identification of a novel HLA-B*44 allele, HLA-B*44:237N, in a Chinese individual. HLA 2016; 88:126-7. [PMID: 27522952 DOI: 10.1111/tan.12862] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Revised: 07/23/2016] [Accepted: 07/26/2016] [Indexed: 11/30/2022]
Abstract
B*44:237N differs from B*44:03:01 by nucleotides deletion at nucleotide 286 and 287 in exon 2.
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Affiliation(s)
- W Qiang
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - Y-Y Zhu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - J Zou
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
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40
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Hsiao J, Yuan TY, Tsai MS, Lu CY, Lin YC, Lee ML, Lin SW, Chang FC, Liu Pimentel H, Olive C, Coito C, Shen G, Young M, Thorne T, Lawrence M, Magistri M, Faghihi MA, Khorkova O, Wahlestedt C. Upregulation of Haploinsufficient Gene Expression in the Brain by Targeting a Long Non-coding RNA Improves Seizure Phenotype in a Model of Dravet Syndrome. EBioMedicine 2016; 9:257-277. [PMID: 27333023 PMCID: PMC4972487 DOI: 10.1016/j.ebiom.2016.05.011] [Citation(s) in RCA: 98] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2016] [Revised: 05/02/2016] [Accepted: 05/09/2016] [Indexed: 02/07/2023] Open
Abstract
Dravet syndrome is a devastating genetic brain disorder caused by heterozygous loss-of-function mutation in the voltage-gated sodium channel gene SCN1A. There are currently no treatments, but the upregulation of SCN1A healthy allele represents an appealing therapeutic strategy. In this study we identified a novel, evolutionary conserved mechanism controlling the expression of SCN1A that is mediated by an antisense non-coding RNA (SCN1ANAT). Using oligonucleotide-based compounds (AntagoNATs) targeting SCN1ANAT we were able to induce specific upregulation of SCN1A both in vitro and in vivo, in the brain of Dravet knock-in mouse model and a non-human primate. AntagoNAT-mediated upregulation of Scn1a in postnatal Dravet mice led to significant improvements in seizure phenotype and excitability of hippocampal interneurons. These results further elucidate the pathophysiology of Dravet syndrome and outline a possible new approach for the treatment of this and other genetic disorders with similar etiology.
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Affiliation(s)
- J Hsiao
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - T Y Yuan
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - M S Tsai
- Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University Hospital, College of Medicine, National Taiwan University, No. 1, Sec. 1, Jen-Ai Rd., Taipei 100, Taiwan
| | - C Y Lu
- Department of Veterinary Medicine, School of Veterinary Medicine, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 106, Taiwan
| | - Y C Lin
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - M L Lee
- Dep. Clinical Laboratory Science and Medical Biotechnology, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan
| | - S W Lin
- Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University Hospital, College of Medicine, National Taiwan University, No. 1, Sec. 1, Jen-Ai Rd., Taipei 100, Taiwan; Department of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan University, No. 7, Chung-Shan S. Rd., Taipei 100, Taiwan; Center for Genomic Medicine, National Taiwan University, No. 7, Chung-Shan S. Rd., Taipei 100, Taiwan
| | - F C Chang
- Department of Veterinary Medicine, School of Veterinary Medicine, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei 106, Taiwan; Graduate Institute of Brain and Mind Sciences, College of Medicine, National Taiwan University, No. 1, Sec. 1, Jen-Ai Rd., Taipei 100, Taiwan; Graduate Institute of Acupuncture Science, College of Chinese Medicine, China Medical University, Taichung, Taiwan
| | - H Liu Pimentel
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - C Olive
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - C Coito
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - G Shen
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - M Young
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - T Thorne
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - M Lawrence
- RxGen, 100 Deepwood Drive, Hamden, CT 06517, USA
| | - M Magistri
- Center for Therapeutic Innovation and the Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, 1501 NW 10th Avenue, Miami 33136, FL, USA
| | - M A Faghihi
- Center for Therapeutic Innovation and the Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, 1501 NW 10th Avenue, Miami 33136, FL, USA
| | - O Khorkova
- OPKO Health Inc., 10320 USA Today Way, Miramar, FL 33025, USA
| | - C Wahlestedt
- Center for Therapeutic Innovation and the Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, 1501 NW 10th Avenue, Miami 33136, FL, USA.
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41
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Zhu YY, Qiang W, Shen G, Zou J, Jiang YZ. A novel HLA-B allele, HLA-B*40:01:47. HLA 2016; 87:461-2. [PMID: 27140171 DOI: 10.1111/tan.12806] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2016] [Revised: 03/31/2016] [Accepted: 04/01/2016] [Indexed: 11/27/2022]
Abstract
HLA-B*40:01:47 differs from HLA-B*40:01:01 by one nucleotide exchange at position 420 in exon 3.
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Affiliation(s)
- Y-Y Zhu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - W Qiang
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - J Zou
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - Y-Z Jiang
- Microbiology Laboratory, Hubei Provincial Center for Disease Control and Prevention, Wuhan, China
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42
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Chen Y, Shen G, Huang Y, Zhang Y, Han Y, Wang R, Shen H, Su S, Lin N, Zhu D, Pei L, Zheng X, Wu J, Wang X, Liu W, Wong M, Tao S. Household air pollution and personal exposure risk of polycyclic aromatic hydrocarbons among rural residents in Shanxi, China. Indoor Air 2016; 26:246-258. [PMID: 25808453 DOI: 10.1111/ina.12204] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2015] [Accepted: 03/16/2015] [Indexed: 06/04/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are a group of pollutants of widespread concerns. Gaseous and size-segregated particulate-phase PAHs were collected in indoor and outdoor air in rural households. Personal exposure was measured and compared to the ingestion exposure. The average concentrations of 28 parent PAHs and benzo(a)pyrene (BaP) were 9000 ± 8390 and 131 ± 236 ng/m(3) for kitchen, 2590 ± 2270 and 43 ± 95 ng/m(3) for living room, and 2800 ± 3890 and 1.6 ± 0.7 ng/m(3) for outdoor air, respectively. The mass percent of high molecular weight (HMW) compounds with 5-6 rings contributed 1.3% to total 28 parent PAHs. Relatively higher fractions of HMW PAHs were found in indoor air compared to outdoor air. Majorities of particle-bound PAHs were found in the finest PM0.25 , and the highest levels of fine PM0.25 -bound PAHs were in the kitchen using peat and wood as energy sources. The 24-h personal PAH exposure concentration was 2100 ± 1300 ng/m(3) . Considering energies, exposures to those using wood were the highest. The PAH inhalation exposure comprised up to about 30% in total PAH exposure through food ingestion and inhalation, and the population attributable fraction (PAF) for lung cancer in the region was 0.85%. The risks for inhaled and ingested intakes of PAHs were 1.0 × 10(-5) and 1.1 × 10(-5) , respectively.
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Affiliation(s)
- Y Chen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - G Shen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
- Jiangsu Provincial Laboratory of Environmental Engineering, Jiangsu Academy of Environmental Sciences, Nanjing, China
| | - Y Huang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - Y Zhang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - Y Han
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - R Wang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - H Shen
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - S Su
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - N Lin
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - D Zhu
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - L Pei
- Institute of Population Research, Peking University, Beijing, China
| | - X Zheng
- Institute of Population Research, Peking University, Beijing, China
| | - J Wu
- Institute of Population Research, Peking University, Beijing, China
| | - X Wang
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - W Liu
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
| | - M Wong
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, Hong Kong Institute of Education, Hong Kong, China
| | - S Tao
- Laboratory of Earth Surface Processes, College of Urban and Environmental Science, Peking University, Beijing, China
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43
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Zhu YY, Qiang W, Shen G, Zou J, Liu GJ. HLA-A*24:02:96, a novel variant of HLA-A*24:02:01:01, identified in a Chinese individual by sequence-based typing. HLA 2016; 87:171-2. [PMID: 26918921 DOI: 10.1111/tan.12758] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 01/26/2016] [Accepted: 01/31/2016] [Indexed: 11/30/2022]
Abstract
HLA-A*24:02:96 shows one nucleotide difference from HLA-A*24:02:01:01 at position 318 in exon 2 from C to T.
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Affiliation(s)
- Y-Y Zhu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - W Qiang
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - J Zou
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G-J Liu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
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44
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Qiang W, Shen G, Zhu YY, Zou J. A novel allele, HLA-B*55:77, identified by sequence-based typing in a Chinese individual. HLA 2016; 87:185-6. [PMID: 26916975 DOI: 10.1111/tan.12748] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Revised: 01/13/2016] [Accepted: 01/20/2016] [Indexed: 11/27/2022]
Abstract
HLA-B*55:77 differs from B*55:02:01:01 by a single nucleotide at position 164 in exon 2.
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Affiliation(s)
- W Qiang
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - Y-Y Zhu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - J Zou
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
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45
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Zou J, Qiang W, Shen G, Zhu YY, Li WX, Liu GJ. Identification of a novel HLA-B*40 allele, HLA-B*40:324, by sequence-based typing, in a Chinese individual. HLA 2016; 87:110-1. [PMID: 26889906 DOI: 10.1111/tan.12746] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Revised: 01/13/2016] [Accepted: 01/20/2016] [Indexed: 11/29/2022]
Abstract
The new allele, HLA-B*40:324 differs from B*40:63 by two nucleotide changes in exon 3.
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Affiliation(s)
- J Zou
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - W Qiang
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G Shen
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - Y Y Zhu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - W X Li
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
| | - G J Liu
- HLA Typing Laboratory, Wuhan Blood Center, Wuhan, China
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46
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Li WX, Xia JA, Mao Y, Li G, Shen G. Identification of a new HLA-B allele, HLA-B*15:300, in a Chinese individual. HLA 2016; 87:175-6. [PMID: 26864906 DOI: 10.1111/tan.12747] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Revised: 01/12/2016] [Accepted: 01/20/2016] [Indexed: 11/28/2022]
Abstract
HLA-B*15:300 differs from B*15:01:01:01 by one nucleotide exchange at position 540(G > C) with an amino exchange.
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Affiliation(s)
- W-X Li
- HLA typing laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - J-A Xia
- Department of Neurology, Medical Treatment Center of Wuhan, Wuhan, Hubei, China
| | - Y Mao
- HLA typing laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - G Li
- HLA typing laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
| | - G Shen
- HLA typing laboratory, Blood Center of Wuhan, Wuhan, Hubei, China
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47
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Shen G, Qiang W, Zhu YY, Zou J, Liu GJ, Yao L, Yin JP. A novel alleleHLA-A*11:152was identified by sequence-based typing in a Chinese individual. HLA 2015; 87:41-2. [DOI: 10.1111/tan.12707] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2015] [Revised: 10/12/2015] [Accepted: 10/25/2015] [Indexed: 11/30/2022]
Affiliation(s)
- G. Shen
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - W. Qiang
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - Y.-Y. Zhu
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - J. Zou
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - G.-J. Liu
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - L. Yao
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
| | - J.-P. Yin
- HLA Typing Laboratory; Wuhan Blood Center; Wuhan China
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48
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Yu D, Nie P, Xing G, Shen G. Multi-dimension aesthetic evaluation of the patients with CLP wearing DDRD: a 5-year retrospective study. Int J Oral Maxillofac Surg 2015. [DOI: 10.1016/j.ijom.2015.08.399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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49
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Popov D, Park C, Kenney-Benson C, Shen G. High pressure Laue diffraction and its application to study microstructural changes during the α → β phase transition in Si. Rev Sci Instrum 2015; 86:072204. [PMID: 26233344 DOI: 10.1063/1.4926894] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Accepted: 05/10/2015] [Indexed: 06/04/2023]
Abstract
An approach using polychromatic x-ray Laue diffraction is described for studying pressure induced microstructural changes of materials under pressure. The advantages of this approach with respect to application of monochromatic x-ray diffraction and other techniques are discussed. Experiments to demonstrate the applications of the method have been performed on the α → β phase transition in Si at high pressures using a diamond anvil cell. We present the characterization of microstructures across the α-β phase transition, such as morphology of both the parent and product phases, relative orientation of single-crystals, and deviatoric strains. Subtle inhomogeneous strain of the single-crystal sample caused by lattice rotations becomes detectable with the approach.
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Affiliation(s)
- D Popov
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - C Park
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - C Kenney-Benson
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
| | - G Shen
- High Pressure Collaborative Access Team, Geophysical Laboratory, Carnegie Institution of Washington, Argonne, Illinois 60439, USA
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50
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Shen G, Zhou H, Jia Z, Deng H. Diagnostic performance of diffusion-weighted MRI for detection of pelvic metastatic lymph nodes in patients with cervical cancer: a systematic review and meta-analysis. Br J Radiol 2015; 88:20150063. [PMID: 26111112 DOI: 10.1259/bjr.20150063] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
In recent years, diffusion-weighted (DW) MRI has emerged as a new technique for detecting the pelvic lymph metastases in patients with cervical cancer. The aim of this meta-analysis was to assess the diagnostic value of DW imaging (DWI) for benign/malignant discrimination of pelvic lymph nodes (LNs). Studies about DWI for the detection of metastatic LNs were searched in the PubMed, EMBASE, Web of Science, EBSCO, the Cochrane Library and three Chinese databases. Based on the extracted data, we determined pooled sensitivities, specificities and diagnostic odds ratios (DORs) across studies, calculated positive and negative likelihood ratios (LRs) and constructed summary receiver operating characteristic curves with area under the curve (AUC) and Q* obtained. We also analysed the heterogeneity between studies based on subgroup analysis, threshold effect and publication bias. In total, 15 studies involving 1021 patients met the inclusion criteria. The pooled sensitivity, specificity and DOR of DWI were 0.86 [95% confidence interval (CI), 0.84-0.89], 0.84 (95% CI, 0.83-0.86) and 47.21 (95% CI, 25.67-86.81), respectively. LR syntheses yielded overall positive LR of 6.55 (95% CI, 4.77-9.01) and negative LR of 0.17 (95% CI, 0.12-0.23). The AUC and Q* index were 0.9384 and 0.8754, respectively. The heterogeneity was relatively high between studies; however, there was no evidence for threshold effect and publication bias. DWI is beneficial in the pelvic nodal assessment in patients with cervical cancer. Large-scale, high-quality trials with standard protocols are required to evaluate its clinical value for discrimination of metastatic from non-metastatic pelvic LNs in patients with cervical cancer. Advances in knowledge include providing evidence to assess the role of DWI in nodal staging of cervical cancer.
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Affiliation(s)
- G Shen
- Department of Nuclear Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan, China
| | - H Zhou
- Department of Nuclear Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan, China
| | - Z Jia
- Department of Nuclear Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan, China
| | - H Deng
- Department of Nuclear Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan, China
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