1
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Pironon S, Ondo I, Diazgranados M, Allkin R, Baquero AC, Cámara-Leret R, Canteiro C, Dennehy-Carr Z, Govaerts R, Hargreaves S, Hudson AJ, Lemmens R, Milliken W, Nesbitt M, Patmore K, Schmelzer G, Turner RM, van Andel TR, Ulian T, Antonelli A, Willis KJ. The global distribution of plants used by humans. Science 2024; 383:293-297. [PMID: 38236975 DOI: 10.1126/science.adg8028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Accepted: 12/18/2023] [Indexed: 01/23/2024]
Abstract
Plants sustain human life. Understanding geographic patterns of the diversity of species used by people is thus essential for the sustainable management of plant resources. Here, we investigate the global distribution of 35,687 utilized plant species spanning 10 use categories (e.g., food, medicine, material). Our findings indicate general concordance between utilized and total plant diversity, supporting the potential for simultaneously conserving species diversity and its contributions to people. Although Indigenous lands across Mesoamerica, the Horn of Africa, and Southern Asia harbor a disproportionate diversity of utilized plants, the incidence of protected areas is negatively correlated with utilized species richness. Finding mechanisms to preserve areas containing concentrations of utilized plants and traditional knowledge must become a priority for the implementation of the Kunming-Montreal Global Biodiversity Framework.
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Affiliation(s)
- S Pironon
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - I Ondo
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - M Diazgranados
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- International Plant Science Center, New York Botanical Garden, New York, NY, USA
| | - R Allkin
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - A C Baquero
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - R Cámara-Leret
- Department of Systematic and Evolutionary Botany, University of Zurich, Switzerland
| | - C Canteiro
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - Z Dennehy-Carr
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Herbarium, School of Biological Sciences, University of Reading, Whiteknights, UK
| | - R Govaerts
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - S Hargreaves
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - A J Hudson
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
- Botanic Gardens Conservation International, Richmond, UK
| | - R Lemmens
- Wageningen University and Research, Wageningen, Netherlands
| | - W Milliken
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
| | - M Nesbitt
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Department of Geography, Royal Holloway, University of London, Egham, UK
- Institute of Archaeology, University College London, London, UK
| | - K Patmore
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - G Schmelzer
- Wageningen University and Research, Wageningen, Netherlands
| | - R M Turner
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - T R van Andel
- Wageningen University and Research, Wageningen, Netherlands
- Naturalis Biodiversity Center, Leiden, Netherlands
| | - T Ulian
- Royal Botanic Gardens, Kew, Wakehurst, Ardingly, UK
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - A Antonelli
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Oxford, Oxford, UK
| | - K J Willis
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
- Department of Biology, University of Oxford, Oxford, UK
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2
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Brown MJM, Walker BE, Black N, Govaerts RHA, Ondo I, Turner R, Nic Lughadha E. rWCVP: a companion R package for the World Checklist of Vascular Plants. New Phytol 2023; 240:1355-1365. [PMID: 37289204 DOI: 10.1111/nph.18919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 01/06/2023] [Indexed: 06/09/2023]
Abstract
The World Checklist of Vascular Plants (WCVP) is an extremely valuable resource that is being used to address many fundamental and applied questions in plant science, conservation, ecology and evolution. However, databases of this size require data manipulation skills that pose a barrier to many potential users. Here, we present rWCVP, an open-source R package that aims to facilitate the use of the WCVP by providing clear, intuitive functions to execute many common tasks. These functions include taxonomic name reconciliation, geospatial integration, mapping and generation of multiple different summaries of the WCVP in both data and report format. We have included extensive documentation and tutorials, providing step-by-step guides that are accessible even to users with minimal programming experience. rWCVP is available on cran and GitHub.
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Affiliation(s)
| | | | | | | | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, TW9 3AB, UK
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3
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Richard-Bollans A, Aitken C, Antonelli A, Bitencourt C, Goyder D, Lucas E, Ondo I, Pérez-Escobar OA, Pironon S, Richardson JE, Russell D, Silvestro D, Wright CW, Howes MJR. Machine learning enhances prediction of plants as potential sources of antimalarials. Front Plant Sci 2023; 14:1173328. [PMID: 37304721 PMCID: PMC10248027 DOI: 10.3389/fpls.2023.1173328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 04/20/2023] [Indexed: 06/13/2023]
Abstract
Plants are a rich source of bioactive compounds and a number of plant-derived antiplasmodial compounds have been developed into pharmaceutical drugs for the prevention and treatment of malaria, a major public health challenge. However, identifying plants with antiplasmodial potential can be time-consuming and costly. One approach for selecting plants to investigate is based on ethnobotanical knowledge which, though having provided some major successes, is restricted to a relatively small group of plant species. Machine learning, incorporating ethnobotanical and plant trait data, provides a promising approach to improve the identification of antiplasmodial plants and accelerate the search for new plant-derived antiplasmodial compounds. In this paper we present a novel dataset on antiplasmodial activity for three flowering plant families - Apocynaceae, Loganiaceae and Rubiaceae (together comprising c. 21,100 species) - and demonstrate the ability of machine learning algorithms to predict the antiplasmodial potential of plant species. We evaluate the predictive capability of a variety of algorithms - Support Vector Machines, Logistic Regression, Gradient Boosted Trees and Bayesian Neural Networks - and compare these to two ethnobotanical selection approaches - based on usage as an antimalarial and general usage as a medicine. We evaluate the approaches using the given data and when the given samples are reweighted to correct for sampling biases. In both evaluation settings each of the machine learning models have a higher precision than the ethnobotanical approaches. In the bias-corrected scenario, the Support Vector classifier performs best - attaining a mean precision of 0.67 compared to the best performing ethnobotanical approach with a mean precision of 0.46. We also use the bias correction method and the Support Vector classifier to estimate the potential of plants to provide novel antiplasmodial compounds. We estimate that 7677 species in Apocynaceae, Loganiaceae and Rubiaceae warrant further investigation and that at least 1300 active antiplasmodial species are highly unlikely to be investigated by conventional approaches. While traditional and Indigenous knowledge remains vital to our understanding of people-plant relationships and an invaluable source of information, these results indicate a vast and relatively untapped source in the search for new plant-derived antiplasmodial compounds.
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Affiliation(s)
| | - Conal Aitken
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
- EaStCHEM, School of Chemistry, University of St Andrews, St Andrews, United Kingdom
| | - Alexandre Antonelli
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Oxford, Oxford, United Kingdom
| | | | - David Goyder
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
| | - Eve Lucas
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
| | | | - Samuel Pironon
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, United Kingdom
| | - James E. Richardson
- School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland
- Tropical Diversity Section, Royal Botanic Garden, Edinburgh, United Kingdom
- Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia
- Environmental Research Institute, University College Cork, Cork, Ireland
| | - David Russell
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
| | - Daniele Silvestro
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Department of Biology, University of Fribourg, Fribourg, Switzerland
- Swiss Institute of Bioinformatics, Fribourg, Switzerland
| | - Colin W. Wright
- School of Pharmacy and Medical Sciences, University of Bradford, Bradford, United Kingdom
| | - Melanie-Jayne R. Howes
- Royal Botanic Gardens, Kew, Richmond, United Kingdom
- Institute of Pharmaceutical Science, King’s College London, Franklin-Wilkins Building, London, United Kingdom
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4
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Peterson AT, Aiello-Lammens M, Amatulli G, Anderson R, Cobos M, Diniz-Filho JA, Escobar L, Feng X, Franklin J, Gadelha L, Georges D, Guéguen M, Gueta T, Ingenloff K, Jarvie S, Jiménez L, Karger D, Kass J, Kearney M, Loyola R, Machado-Stredel F, Martínez-Meyer E, Merow C, Mondelli ML, Mortara S, Muscarella R, Myers C, Naimi B, Noesgaard D, Ondo I, Osorio-Olvera L, Owens H, Pearson R, Pinilla-Buitrago G, Sánchez-Tapia A, Saupe E, Thuiller W, Varela S, Warren D, Wieczorek J, Yates K, Zhu G, Zuquim G, Zurell D. ENM2020: A Free Online Course and Set of Resources on Modeling Species' Niches and Distributions. Biodiv Inf 2022. [DOI: 10.17161/bi.v17i.15016] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The field of distributional ecology has seen considerable recent attention, particularly surrounding the theory, protocols, and tools for Ecological Niche Modeling (ENM) or Species Distribution Modeling (SDM). Such analyses have grown steadily over the past two decades—including a maturation of relevant theory and key concepts—but methodological consensus has yet to be reached. In response, and following an online course taught in Spanish in 2018, we designed a comprehensive English-language course covering much of the underlying theory and methods currently applied in this broad field. Here, we summarize that course, ENM2020, and provide links by which resources produced for it can be accessed into the future. ENM2020 lasted 43 weeks, with presentations from 52 instructors, who engaged with >2500 participants globally through >14,000 hours of viewing and >90,000 views of instructional video and question-and-answer sessions. Each major topic was introduced by an “Overview” talk, followed by more detailed lectures on subtopics. The hierarchical and modular format of the course permits updates, corrections, or alternative viewpoints, and generally facilitates revision and reuse, including the use of only the Overview lectures for introductory courses. All course materials are free and openly accessible (CC-BY license) to ensure these resources remain available to all interested in distributional ecology.
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5
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Cartereau M, Leriche A, Baumel A, Ondo I, Chatelain C, Aronson J, Médail F. Global bioregionalization of warm drylands based on tree assemblages mined from occurrence big data. Frontiers of Biogeography 2022. [DOI: 10.21425/f5fbg56435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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6
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Jung M, Arnell A, de Lamo X, García-Rangel S, Lewis M, Mark J, Merow C, Miles L, Ondo I, Pironon S, Ravilious C, Rivers M, Schepaschenko D, Tallowin O, van Soesbergen A, Govaerts R, Boyle BL, Enquist BJ, Feng X, Gallagher R, Maitner B, Meiri S, Mulligan M, Ofer G, Roll U, Hanson JO, Jetz W, Di Marco M, McGowan J, Rinnan DS, Sachs JD, Lesiv M, Adams VM, Andrew SC, Burger JR, Hannah L, Marquet PA, McCarthy JK, Morueta-Holme N, Newman EA, Park DS, Roehrdanz PR, Svenning JC, Violle C, Wieringa JJ, Wynne G, Fritz S, Strassburg BBN, Obersteiner M, Kapos V, Burgess N, Schmidt-Traub G, Visconti P. Areas of global importance for conserving terrestrial biodiversity, carbon and water. Nat Ecol Evol 2021; 5:1499-1509. [PMID: 34429536 DOI: 10.1038/s41559-021-01528-7] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 07/07/2021] [Indexed: 02/07/2023]
Abstract
To meet the ambitious objectives of biodiversity and climate conventions, the international community requires clarity on how these objectives can be operationalized spatially and how multiple targets can be pursued concurrently. To support goal setting and the implementation of international strategies and action plans, spatial guidance is needed to identify which land areas have the potential to generate the greatest synergies between conserving biodiversity and nature's contributions to people. Here we present results from a joint optimization that minimizes the number of threatened species, maximizes carbon retention and water quality regulation, and ranks terrestrial conservation priorities globally. We found that selecting the top-ranked 30% and 50% of terrestrial land area would conserve respectively 60.7% and 85.3% of the estimated total carbon stock and 66% and 89.8% of all clean water, in addition to meeting conservation targets for 57.9% and 79% of all species considered. Our data and prioritization further suggest that adequately conserving all species considered (vertebrates and plants) would require giving conservation attention to ~70% of the terrestrial land surface. If priority was given to biodiversity only, managing 30% of optimally located land area for conservation may be sufficient to meet conservation targets for 81.3% of the terrestrial plant and vertebrate species considered. Our results provide a global assessment of where land could be optimally managed for conservation. We discuss how such a spatial prioritization framework can support the implementation of the biodiversity and climate conventions.
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Affiliation(s)
- Martin Jung
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
| | - Andy Arnell
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Xavier de Lamo
- Food and Agriculture Organization of the United Nations (FAO), Rome, Italy
| | | | - Matthew Lewis
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Department of Zoology, University of Cambridge, Cambridge, UK
| | - Jennifer Mark
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Cory Merow
- Department of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, USA
| | - Lera Miles
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Corinna Ravilious
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Malin Rivers
- Botanic Gardens Conservation International, Richmondy, UK
| | - Dmitry Schepaschenko
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Siberian Federal University, Krasnoyarsk, Russia
| | - Oliver Tallowin
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Arnout van Soesbergen
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Bradley L Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, USA
| | - Rachael Gallagher
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Brian Maitner
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Shai Meiri
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Mark Mulligan
- Department of Geography, King's College London, London, UK
| | - Gali Ofer
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Uri Roll
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | - Jeffrey O Hanson
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Vairão, Portugal
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Moreno Di Marco
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | | | - D Scott Rinnan
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | | | - Myroslava Lesiv
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Vanessa M Adams
- School of Geography, Planning and Spatial Sciences, University of Tasmania, Hobart, Tasmania, Australia
| | - Samuel C Andrew
- CSIRO Land and Water, Canberra, Australian Capital Territory, Australia
| | - Joseph R Burger
- Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Lee Hannah
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Pablo A Marquet
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile.,Centro de Cambio Global UC, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,The Santa Fe Institute, Santa Fe, NM, USA.,Instituto de Sistemas Complejos de Valparaíso (ISCV), Valparaíso, Chile
| | | | - Naia Morueta-Holme
- Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Daniel S Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
| | - Patrick R Roehrdanz
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Jens-Christian Svenning
- Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Department of Biology, Aarhus University, Aarhus, Denmark.,Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Aarhus, Denmark
| | - Cyrille Violle
- CEFE, Univ. Montpellier, CNRS, EPHE, IRD, Univ. Paul Valéry Montpellier 3, Montpellier, France
| | | | | | - Steffen Fritz
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Bernardo B N Strassburg
- Rio Conservation and Sustainability Science Centre, Department of Geography and the Environment, Pontifical Catholic University, Rio de Janeiro, Brazil.,International Institute for Sustainability, Rio de Janeiro, Brazil.,Programa de Pós Graduacão em Ecologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.,Botanical Garden Research Institute of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Michael Obersteiner
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Environmental Change Institute, Centre for the Environment, Oxford University, Oxford, UK
| | - Valerie Kapos
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Neil Burgess
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Piero Visconti
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
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7
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Jung M, Arnell A, de Lamo X, García-Rangel S, Lewis M, Mark J, Merow C, Miles L, Ondo I, Pironon S, Ravilious C, Rivers M, Schepaschenko D, Tallowin O, van Soesbergen A, Govaerts R, Boyle BL, Enquist BJ, Feng X, Gallagher R, Maitner B, Meiri S, Mulligan M, Ofer G, Roll U, Hanson JO, Jetz W, Di Marco M, McGowan J, Rinnan DS, Sachs JD, Lesiv M, Adams VM, Andrew SC, Burger JR, Hannah L, Marquet PA, McCarthy JK, Morueta-Holme N, Newman EA, Park DS, Roehrdanz PR, Svenning JC, Violle C, Wieringa JJ, Wynne G, Fritz S, Strassburg BBN, Obersteiner M, Kapos V, Burgess N, Schmidt-Traub G, Visconti P. Author Correction: Areas of global importance for conserving terrestrial biodiversity, carbon and water. Nat Ecol Evol 2021; 5:1557. [PMID: 34556831 DOI: 10.1038/s41559-021-01569-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Martin Jung
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
| | - Andy Arnell
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Xavier de Lamo
- Food and Agriculture Organization of the United Nations (FAO), Rome, Italy
| | | | - Matthew Lewis
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Department of Zoology, University of Cambridge, Cambridge, UK
| | - Jennifer Mark
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Cory Merow
- Department of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, USA
| | - Lera Miles
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Corinna Ravilious
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Malin Rivers
- Botanic Gardens Conservation International, Richmondy, UK
| | - Dmitry Schepaschenko
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Siberian Federal University, Krasnoyarsk, Russia
| | - Oliver Tallowin
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Arnout van Soesbergen
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Bradley L Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, USA
| | - Rachael Gallagher
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Brian Maitner
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Shai Meiri
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Mark Mulligan
- Department of Geography, King's College London, London, UK
| | - Gali Ofer
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Uri Roll
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | - Jeffrey O Hanson
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Vairão, Portugal
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Moreno Di Marco
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | | | - D Scott Rinnan
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | | | - Myroslava Lesiv
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Vanessa M Adams
- School of Geography, Planning and Spatial Sciences, University of Tasmania, Hobart, Tasmania, Australia
| | - Samuel C Andrew
- CSIRO Land and Water, Canberra, Australian Capital Territory, Australia
| | - Joseph R Burger
- Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Lee Hannah
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Pablo A Marquet
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile.,Centro de Cambio Global UC, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,The Santa Fe Institute, Santa Fe, NM, USA.,Instituto de Sistemas Complejos de Valparaíso (ISCV), Valparaíso, Chile
| | | | - Naia Morueta-Holme
- Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Daniel S Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
| | - Patrick R Roehrdanz
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Jens-Christian Svenning
- Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Department of Biology, Aarhus University, Aarhus, Denmark.,Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Aarhus, Denmark
| | - Cyrille Violle
- CEFE, Univ. Montpellier, CNRS, EPHE, IRD, Univ. Paul Valéry Montpellier 3, Montpellier, France
| | | | | | - Steffen Fritz
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Bernardo B N Strassburg
- Rio Conservation and Sustainability Science Centre, Department of Geography and the Environment, Pontifical Catholic University, Rio de Janeiro, Brazil.,International Institute for Sustainability, Rio de Janeiro, Brazil.,Programa de Pós Graduacão em Ecologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.,Botanical Garden Research Institute of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Michael Obersteiner
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Environmental Change Institute, Centre for the Environment, Oxford University, Oxford, UK
| | - Valerie Kapos
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Neil Burgess
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Piero Visconti
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
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8
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Zu P, Koch H, Schwery O, Pironon S, Phillips C, Ondo I, Farrell IW, Nes WD, Moore E, Wright GA, Farman DI, Stevenson PC. Pollen sterols are associated with phylogeny and environment but not with pollinator guilds. New Phytol 2021; 230:1169-1184. [PMID: 33484583 PMCID: PMC8653887 DOI: 10.1111/nph.17227] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 01/14/2021] [Indexed: 06/01/2023]
Abstract
Phytosterols are primary plant metabolites that have fundamental structural and regulatory functions. They are also essential nutrients for phytophagous insects, including pollinators, that cannot synthesize sterols. Despite the well-described composition and diversity in vegetative plant tissues, few studies have examined phytosterol diversity in pollen. We quantified 25 pollen phytosterols in 122 plant species (105 genera, 51 families) to determine their composition and diversity across plant taxa. We searched literature and databases for plant phylogeny, environmental conditions, and pollinator guilds of the species to examine the relationships with pollen sterols. 24-methylenecholesterol, sitosterol and isofucosterol were the most common and abundant pollen sterols. We found phylogenetic clustering of twelve individual sterols, total sterol content and sterol diversity, and of sterol groupings that reflect their underlying biosynthesis pathway (C-24 alkylation, ring B desaturation). Plants originating in tropical-like climates (higher mean annual temperature, lower temperature seasonality, higher precipitation in wettest quarter) were more likely to record higher pollen sterol content. However, pollen sterol composition and content showed no clear relationship with pollinator guilds. Our study is the first to show that pollen sterol diversity is phylogenetically clustered and that pollen sterol content may adapt to environmental conditions.
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Affiliation(s)
- Pengjuan Zu
- Royal Botanic GardensKew, Natural Capital and Plant Health DepartmentRichmondSurreyTW9 3ABUK
- Department Fish Ecology and EvolutionSwiss Federal Institute of Aquatic Science and TechnologySeestrasse 79KastanienbaumCH‐6047Switzerland
| | - Hauke Koch
- Royal Botanic GardensKew, Natural Capital and Plant Health DepartmentRichmondSurreyTW9 3ABUK
| | - Orlando Schwery
- New Mexico Consortium4200 W. Jemez Rd, Suite 301Los AlamosNM87544USA
| | - Samuel Pironon
- Royal Botanic GardensKew, Biodiversity Informatics and Spatial Analysis DepartmentRichmondSurreyTW9 3ABUK
| | - Charlotte Phillips
- Royal Botanic GardensKew, Biodiversity Informatics and Spatial Analysis DepartmentRichmondSurreyTW9 3ABUK
- Royal Botanic GardensKew, Conservation Science DepartmentWakehurst PlaceArdinglyWest SussexRH17 6TNUK
| | - Ian Ondo
- Royal Botanic GardensKew, Biodiversity Informatics and Spatial Analysis DepartmentRichmondSurreyTW9 3ABUK
| | - Iain W. Farrell
- Royal Botanic GardensKew, Natural Capital and Plant Health DepartmentRichmondSurreyTW9 3ABUK
| | - W. David Nes
- Department of Chemistry & BiochemistryTexas Tech UniversityLubbockTX79424USA
| | - Elynor Moore
- Department of ZoologyUniversity of Oxford11a Mansfield RoadOxfordOX1 3SZUK
| | | | - Dudley I. Farman
- Natural Resources InstituteUniversity of GreenwichChatham, KentME4 4TBUK
| | - Philip C. Stevenson
- Royal Botanic GardensKew, Natural Capital and Plant Health DepartmentRichmondSurreyTW9 3ABUK
- Natural Resources InstituteUniversity of GreenwichChatham, KentME4 4TBUK
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9
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Pironon S, Borrell JS, Ondo I, Douglas R, Phillips C, Khoury CK, Kantar MB, Fumia N, Soto Gomez M, Viruel J, Govaerts R, Forest F, Antonelli A. Toward Unifying Global Hotspots of Wild and Domesticated Biodiversity. Plants (Basel) 2020; 9:E1128. [PMID: 32878166 PMCID: PMC7569820 DOI: 10.3390/plants9091128] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 08/26/2020] [Accepted: 08/27/2020] [Indexed: 11/25/2022]
Abstract
Global biodiversity hotspots are areas containing high levels of species richness, endemism and threat. Similarly, regions of agriculturally relevant diversity have been identified where many domesticated plants and animals originated, and co-occurred with their wild ancestors and relatives. The agro-biodiversity in these regions has, likewise, often been considered threatened. Biodiversity and agro-biodiversity hotspots partly overlap, but their geographic intricacies have rarely been investigated together. Here we review the history of these two concepts and explore their geographic relationship by analysing global distribution and human use data for all plants, and for major crops and associated wild relatives. We highlight a geographic continuum between agro-biodiversity hotspots that contain high richness in species that are intensively used and well known by humanity (i.e., major crops and most viewed species on Wikipedia) and biodiversity hotspots encompassing species that are less heavily used and documented (i.e., crop wild relatives and species lacking information on Wikipedia). Our contribution highlights the key considerations needed for further developing a unifying concept of agro-biodiversity hotspots that encompasses multiple facets of diversity (including genetic and phylogenetic) and the linkage with overall biodiversity. This integration will ultimately enhance our understanding of the geography of human-plant interactions and help guide the preservation of nature and its contributions to people.
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Affiliation(s)
- Samuel Pironon
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - James S. Borrell
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - Ruben Douglas
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | | | - Colin K. Khoury
- International Center for Tropical Agriculture (CIAT), Cali 6713, Colombia;
- Department of Biology, Saint Louis University, St. Louis, MO 63103, USA
| | - Michael B. Kantar
- Department of Tropical Plant and Soil Science, University of Hawaii at Manoa, Honolulu, HI 96822, USA; (M.B.K.); (N.F.)
| | - Nathan Fumia
- Department of Tropical Plant and Soil Science, University of Hawaii at Manoa, Honolulu, HI 96822, USA; (M.B.K.); (N.F.)
| | - Marybel Soto Gomez
- Department of Botany, University of British Columbia, Vancouver, BC V6T1Z4, Canada;
- UBC Botanical Garden and Centre for Plant Research, University of British Columbia, Vancouver, BC V6T1Z4, Canada
| | - Juan Viruel
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - Rafael Govaerts
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - Félix Forest
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
| | - Alexandre Antonelli
- Royal Botanic Gardens, Kew, Richmond TW93AQ, UK; (J.S.B.); (I.O.); (R.D.); (J.V.); (R.G.); (F.F.); (A.A.)
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Göteborg, Sweden
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