1
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Newman EA, Feng X, Onland JD, Walker KR, Young S, Smith K, Townsend J, Damian D, Ernst K. Defining the roles of local precipitation and anthropogenic water sources in driving the abundance of Aedes aegypti, an emerging disease vector in urban, arid landscapes. Sci Rep 2024; 14:2058. [PMID: 38267474 PMCID: PMC10808563 DOI: 10.1038/s41598-023-50346-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Accepted: 12/19/2023] [Indexed: 01/26/2024] Open
Abstract
Understanding drivers of disease vectors' population dynamics is a pressing challenge. For short-lived organisms like mosquitoes, landscape-scale models must account for their highly local and rapid life cycles. Aedes aegypti, a vector of multiple emerging diseases, has become abundant in desert population centers where water from precipitation could be a limiting factor. To explain this apparent paradox, we examined Ae. aegypti abundances at > 660 trapping locations per year for 3 years in the urbanized Maricopa County (metropolitan Phoenix), Arizona, USA. We created daily precipitation layers from weather station data using a kriging algorithm, and connected localized daily precipitation to numbers of mosquitoes trapped at each location on subsequent days. Precipitation events occurring in either of two critical developmental periods for mosquitoes were correlated to suppressed subsequent adult female presence and abundance. LASSO models supported these analyses for female presence but not abundance. Precipitation may explain 72% of Ae. aegypti presence and 90% of abundance, with anthropogenic water sources supporting mosquitoes during long, precipitation-free periods. The method of using kriging and weather station data may be generally applicable to the study of various ecological processes and patterns, and lead to insights into microclimates associated with a variety of organisms' life cycles.
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Affiliation(s)
- Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA.
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA.
| | - Xiao Feng
- Department of Biology, University of North Carolina, Chapel Hill, NC, 27599, USA
| | | | - Kathleen R Walker
- Department of Entomology, University of Arizona, 1140 E South Campus Drive, Forbes 410, Tucson, AZ, 85721, USA
| | - Steven Young
- Maricopa County Environmental Services Vector Control Division, 3220 W Gibson Ln, Phoenix, AZ, 85009, USA
| | - Kirk Smith
- Maricopa County Environmental Services Vector Control Division, 3220 W Gibson Ln, Phoenix, AZ, 85009, USA
| | - John Townsend
- Maricopa County Environmental Services Vector Control Division, 3220 W Gibson Ln, Phoenix, AZ, 85009, USA
| | - Dan Damian
- Maricopa County Office of Enterprise Technology, 301 S 4Th Ave #200, Phoenix, AZ, 85003, USA
| | - Kacey Ernst
- Mel and Enid Zuckerman College of Public Health, University of Arizona, Tucson, AZ, 85721, USA
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2
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Peptenatu D, Andronache I, Ahammer H, Radulovic M, Costanza JK, Jelinek HF, Di Ieva A, Koyama K, Grecu A, Gruia AK, Simion AG, Nedelcu ID, Olteanu C, Drăghici CC, Marin M, Diaconu DC, Fensholt R, Newman EA. Correction to: A new fractal index to classify forest fragmentation and disorder. Landsc Ecol 2023. [DOI: 10.1007/s10980-023-01781-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2023]
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3
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Riva F, Graco-Roza C, Daskalova GN, Hudgins EJ, Lewthwaite JM, Newman EA, Ryo M, Mammola S. Toward a cohesive understanding of ecological complexity. Sci Adv 2023; 9:eabq4207. [PMID: 37343095 PMCID: PMC10284553 DOI: 10.1126/sciadv.abq4207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 05/17/2023] [Indexed: 06/23/2023]
Abstract
Ecological systems are quintessentially complex systems. Understanding and being able to predict phenomena typical of complex systems is, therefore, critical to progress in ecology and conservation amidst escalating global environmental change. However, myriad definitions of complexity and excessive reliance on conventional scientific approaches hamper conceptual advances and synthesis. Ecological complexity may be better understood by following the solid theoretical basis of complex system science (CSS). We review features of ecological systems described within CSS and conduct bibliometric and text mining analyses to characterize articles that refer to ecological complexity. Our analyses demonstrate that the study of complexity in ecology is a highly heterogeneous, global endeavor that is only weakly related to CSS. Current research trends are typically organized around basic theory, scaling, and macroecology. We leverage our review and the generalities identified in our analyses to suggest a more coherent and cohesive way forward in the study of complexity in ecology.
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Affiliation(s)
- Federico Riva
- Geomatics and Landscape Ecology Laboratory, Department of Biology, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario K1S 5B6, Canada
- Insectarium, Montreal Space for Life, 4581 Sherbrooke St E, Montreal, Quebec H1X 2B2, Canada
- Spatial Ecology Group, Department of Ecology and Evolution, Université de Lausanne, Lausanne, Switzerland
| | - Caio Graco-Roza
- Aquatic Community Ecology Group, Department of Geosciences and Geography, University of Helsinki, Gustaf Hällströmin katu 2, 00560 Helsinki, Finland
- Laboratory of Ecology and Physiology of Phytoplankton, Department of Plant Biology, State University of Rio de Janeiro, Rua São Francisco Xavier 524, PHLC, Sala 511a, 20550-900 Rio de Janeiro, Brazil
| | - Gergana N. Daskalova
- Biodiversity and Ecology Group, International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Emma J. Hudgins
- Geomatics and Landscape Ecology Laboratory, Department of Biology, Carleton University, 1125 Colonel By Dr, Ottawa, Ontario K1S 5B6, Canada
| | - Jayme M. M. Lewthwaite
- Marine and Environmental Biology, University of Southern California, 3616 Trousdale Pkwy, Los Angeles, CA 90089-0371, USA
| | - Erica A. Newman
- Department of Integrative Biology, University of Texas at Austin, Austin, TX 78712, USA
| | - Masahiro Ryo
- Leibniz Centre for Agricultural Landscape Research (ZALF), Eberswalder Str. 84, 15374 Muencheberg, Germany
- Environment and Natural Sciences, Brandenburg University of Technology Cottbus-Senftenberg, 03046 Cottbus, Germany
| | - Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History (LUOMUS), University of Helsinki, Pohjoinen Rautatiekatu 13, Helsinki 00100, Finland
- Molecular Ecology Group (MEG), Water Research Institute (IRSA), National Research Council (CNR), Corso Tonolli, 50, Pallanza 28922, Italy
- National Biodiversity Future Center, Palermo, Italy
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4
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Peptenatu D, Andronache I, Ahammer H, Radulovic M, Costanza JK, Jelinek HF, Di Ieva A, Koyama K, Grecu A, Gruia AK, Simion AG, Nedelcu ID, Olteanu C, Drăghici CC, Marin M, Diaconu DC, Fensholt R, Newman EA. A new fractal index to classify forest fragmentation and disorder. Landsc Ecol 2023; 38:1373-1393. [DOI: 10.1007/s10980-023-01640-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 03/10/2023] [Indexed: 11/14/2023]
Abstract
Abstract
Context
Forest loss and fragmentation pose extreme threats to biodiversity. Their efficient characterization from remotely sensed data therefore has strong practical implications. Data are often separately analyzed for spatial fragmentation and disorder, but no existing metric simultaneously quantifies both the shape and arrangement of fragments.
Objectives
We present a fractal fragmentation and disorder index (FFDI), which advances a previously developed fractal index by merging it with the Rényi information dimension. The FFDI is designed to work across spatial scales, and to efficiently report both the fragmentation of images and their spatial disorder.
Methods
We validate the FFDI with 12,600 synthetic hierarchically structured random map (HRM) multiscale images, as well as several other categories of fractal and non-fractal test images (4880 images). We then apply the FFDI to satellite imagery of forest cover for 10 distinct regions of the Romanian Carpathian Mountains from 2000–2021.
Results
The FFDI outperformed its two individual components (fractal fragmentation index and Rényi information dimension) in resolving spatial patterns of disorder and fragmentation when tested on HRM classes and other image types. The FFDI thus offers a clear advantage when compared to the individual use of fractal fragmentation index and the Information Dimension, and provided good classification performance in an application to real data.
Conclusions
This work improves on previous characterizations of landscape patterns. With the FFDI, scientists will be able to better monitor and understand forest fragmentation from satellite imagery. The FFDI may also find wider applicability in biology wherever image analysis is used.
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5
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Boyle BL, Maitner BS, Barbosa GGC, Sajja RK, Feng X, Merow C, Newman EA, Park DS, Roehrdanz PR, Enquist BJ. Geographic name resolution service: A tool for the standardization and indexing of world political division names, with applications to species distribution modeling. PLoS One 2022; 17:e0268162. [PMID: 36374834 PMCID: PMC9662723 DOI: 10.1371/journal.pone.0268162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 10/20/2022] [Indexed: 11/16/2022] Open
Abstract
Massive biological databases of species occurrences, or georeferenced locations where a species has been observed, are essential inputs for modeling present and future species distributions. Location accuracy is often assessed by determining whether the observation geocoordinates fall within the boundaries of the declared political divisions. This otherwise simple validation is complicated by the difficulty of matching political division names to the correct geospatial object. Spelling errors, abbreviations, alternative codes, and synonyms in multiple languages present daunting name disambiguation challenges. The inability to resolve political division names reduces usable data, and analysis of erroneous observations can lead to flawed results. Here, we present the Geographic Name Resolution Service (GNRS), an application for correcting, standardizing, and indexing world political division names. The GNRS resolves political division names against a reference database that combines names and codes from GeoNames with geospatial object identifiers from the Global Administrative Areas Database (GADM). In a trial resolution of political division names extracted from >270 million species occurrences, only 1.9%, representing just 6% of occurrences, matched exactly to GADM political divisions in their original form. The GNRS was able to resolve, completely or in part, 92% of the remaining 378,568 political division names, or 86% of the full biodiversity occurrence dataset. In assessing geocoordinate accuracy for >239 million species occurrences, resolution of political divisions by the GNRS enabled the detection of an order of magnitude more errors and an order of magnitude more error-free occurrences. By providing a novel solution to a significant data quality impediment, the GNRS liberates a tremendous amount of biodiversity data for quantitative biodiversity research. The GNRS runs as a web service and is accessible via an API, an R package, and a web-based graphical user interface. Its modular architecture is easily integrated into existing data validation workflows.
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Affiliation(s)
- Bradley L. Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States of America
- * E-mail:
| | - Brian S. Maitner
- Eversource Energy Center and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, United States of America
| | - George G. C. Barbosa
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States of America
| | - Rohith K. Sajja
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States of America
| | - Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, United States of America
| | - Cory Merow
- Eversource Energy Center and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, United States of America
| | - Erica A. Newman
- School of Natural Resources & the Environment, University of Arizona, Tucson, AZ, United States of America
| | - Daniel S. Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, United States of America
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States of America
| | - Patrick R. Roehrdanz
- The Moore Center for Science, Conservation International, Arlington, VA, United States of America
| | - Brian J. Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, United States of America
- The Santa Fe Institute, USA, Santa Fe, NM, United States of America
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6
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Jung M, Arnell A, de Lamo X, García-Rangel S, Lewis M, Mark J, Merow C, Miles L, Ondo I, Pironon S, Ravilious C, Rivers M, Schepaschenko D, Tallowin O, van Soesbergen A, Govaerts R, Boyle BL, Enquist BJ, Feng X, Gallagher R, Maitner B, Meiri S, Mulligan M, Ofer G, Roll U, Hanson JO, Jetz W, Di Marco M, McGowan J, Rinnan DS, Sachs JD, Lesiv M, Adams VM, Andrew SC, Burger JR, Hannah L, Marquet PA, McCarthy JK, Morueta-Holme N, Newman EA, Park DS, Roehrdanz PR, Svenning JC, Violle C, Wieringa JJ, Wynne G, Fritz S, Strassburg BBN, Obersteiner M, Kapos V, Burgess N, Schmidt-Traub G, Visconti P. Areas of global importance for conserving terrestrial biodiversity, carbon and water. Nat Ecol Evol 2021; 5:1499-1509. [PMID: 34429536 DOI: 10.1038/s41559-021-01528-7] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 07/07/2021] [Indexed: 02/07/2023]
Abstract
To meet the ambitious objectives of biodiversity and climate conventions, the international community requires clarity on how these objectives can be operationalized spatially and how multiple targets can be pursued concurrently. To support goal setting and the implementation of international strategies and action plans, spatial guidance is needed to identify which land areas have the potential to generate the greatest synergies between conserving biodiversity and nature's contributions to people. Here we present results from a joint optimization that minimizes the number of threatened species, maximizes carbon retention and water quality regulation, and ranks terrestrial conservation priorities globally. We found that selecting the top-ranked 30% and 50% of terrestrial land area would conserve respectively 60.7% and 85.3% of the estimated total carbon stock and 66% and 89.8% of all clean water, in addition to meeting conservation targets for 57.9% and 79% of all species considered. Our data and prioritization further suggest that adequately conserving all species considered (vertebrates and plants) would require giving conservation attention to ~70% of the terrestrial land surface. If priority was given to biodiversity only, managing 30% of optimally located land area for conservation may be sufficient to meet conservation targets for 81.3% of the terrestrial plant and vertebrate species considered. Our results provide a global assessment of where land could be optimally managed for conservation. We discuss how such a spatial prioritization framework can support the implementation of the biodiversity and climate conventions.
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Affiliation(s)
- Martin Jung
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
| | - Andy Arnell
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Xavier de Lamo
- Food and Agriculture Organization of the United Nations (FAO), Rome, Italy
| | | | - Matthew Lewis
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Department of Zoology, University of Cambridge, Cambridge, UK
| | - Jennifer Mark
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Cory Merow
- Department of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, USA
| | - Lera Miles
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Corinna Ravilious
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Malin Rivers
- Botanic Gardens Conservation International, Richmondy, UK
| | - Dmitry Schepaschenko
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Siberian Federal University, Krasnoyarsk, Russia
| | - Oliver Tallowin
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Arnout van Soesbergen
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Bradley L Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, USA
| | - Rachael Gallagher
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Brian Maitner
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Shai Meiri
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Mark Mulligan
- Department of Geography, King's College London, London, UK
| | - Gali Ofer
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Uri Roll
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | - Jeffrey O Hanson
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Vairão, Portugal
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Moreno Di Marco
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | | | - D Scott Rinnan
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | | | - Myroslava Lesiv
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Vanessa M Adams
- School of Geography, Planning and Spatial Sciences, University of Tasmania, Hobart, Tasmania, Australia
| | - Samuel C Andrew
- CSIRO Land and Water, Canberra, Australian Capital Territory, Australia
| | - Joseph R Burger
- Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Lee Hannah
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Pablo A Marquet
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile.,Centro de Cambio Global UC, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,The Santa Fe Institute, Santa Fe, NM, USA.,Instituto de Sistemas Complejos de Valparaíso (ISCV), Valparaíso, Chile
| | | | - Naia Morueta-Holme
- Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Daniel S Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
| | - Patrick R Roehrdanz
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Jens-Christian Svenning
- Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Department of Biology, Aarhus University, Aarhus, Denmark.,Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Aarhus, Denmark
| | - Cyrille Violle
- CEFE, Univ. Montpellier, CNRS, EPHE, IRD, Univ. Paul Valéry Montpellier 3, Montpellier, France
| | | | | | - Steffen Fritz
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Bernardo B N Strassburg
- Rio Conservation and Sustainability Science Centre, Department of Geography and the Environment, Pontifical Catholic University, Rio de Janeiro, Brazil.,International Institute for Sustainability, Rio de Janeiro, Brazil.,Programa de Pós Graduacão em Ecologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.,Botanical Garden Research Institute of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Michael Obersteiner
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Environmental Change Institute, Centre for the Environment, Oxford University, Oxford, UK
| | - Valerie Kapos
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Neil Burgess
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Piero Visconti
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
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7
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Jung M, Arnell A, de Lamo X, García-Rangel S, Lewis M, Mark J, Merow C, Miles L, Ondo I, Pironon S, Ravilious C, Rivers M, Schepaschenko D, Tallowin O, van Soesbergen A, Govaerts R, Boyle BL, Enquist BJ, Feng X, Gallagher R, Maitner B, Meiri S, Mulligan M, Ofer G, Roll U, Hanson JO, Jetz W, Di Marco M, McGowan J, Rinnan DS, Sachs JD, Lesiv M, Adams VM, Andrew SC, Burger JR, Hannah L, Marquet PA, McCarthy JK, Morueta-Holme N, Newman EA, Park DS, Roehrdanz PR, Svenning JC, Violle C, Wieringa JJ, Wynne G, Fritz S, Strassburg BBN, Obersteiner M, Kapos V, Burgess N, Schmidt-Traub G, Visconti P. Author Correction: Areas of global importance for conserving terrestrial biodiversity, carbon and water. Nat Ecol Evol 2021; 5:1557. [PMID: 34556831 DOI: 10.1038/s41559-021-01569-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Martin Jung
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
| | - Andy Arnell
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Xavier de Lamo
- Food and Agriculture Organization of the United Nations (FAO), Rome, Italy
| | | | - Matthew Lewis
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Department of Zoology, University of Cambridge, Cambridge, UK
| | - Jennifer Mark
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Cory Merow
- Department of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, USA
| | - Lera Miles
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Ian Ondo
- Royal Botanic Gardens, Kew, Richmond, UK
| | | | - Corinna Ravilious
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Malin Rivers
- Botanic Gardens Conservation International, Richmondy, UK
| | - Dmitry Schepaschenko
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Siberian Federal University, Krasnoyarsk, Russia
| | - Oliver Tallowin
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Arnout van Soesbergen
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Bradley L Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, USA
| | - Rachael Gallagher
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Brian Maitner
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Shai Meiri
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Mark Mulligan
- Department of Geography, King's College London, London, UK
| | - Gali Ofer
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - Uri Roll
- Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, Israel
| | - Jeffrey O Hanson
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Vairão, Portugal
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Moreno Di Marco
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | | | - D Scott Rinnan
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.,Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | | | - Myroslava Lesiv
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Vanessa M Adams
- School of Geography, Planning and Spatial Sciences, University of Tasmania, Hobart, Tasmania, Australia
| | - Samuel C Andrew
- CSIRO Land and Water, Canberra, Australian Capital Territory, Australia
| | - Joseph R Burger
- Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Lee Hannah
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Pablo A Marquet
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile.,Centro de Cambio Global UC, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,The Santa Fe Institute, Santa Fe, NM, USA.,Instituto de Sistemas Complejos de Valparaíso (ISCV), Valparaíso, Chile
| | | | - Naia Morueta-Holme
- Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Daniel S Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
| | - Patrick R Roehrdanz
- Betty and Gordon Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Jens-Christian Svenning
- Center for Biodiversity Dynamics in a Changing World (BIOCHANGE), Department of Biology, Aarhus University, Aarhus, Denmark.,Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Aarhus, Denmark
| | - Cyrille Violle
- CEFE, Univ. Montpellier, CNRS, EPHE, IRD, Univ. Paul Valéry Montpellier 3, Montpellier, France
| | | | | | - Steffen Fritz
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria
| | - Bernardo B N Strassburg
- Rio Conservation and Sustainability Science Centre, Department of Geography and the Environment, Pontifical Catholic University, Rio de Janeiro, Brazil.,International Institute for Sustainability, Rio de Janeiro, Brazil.,Programa de Pós Graduacão em Ecologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.,Botanical Garden Research Institute of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Michael Obersteiner
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.,Environmental Change Institute, Centre for the Environment, Oxford University, Oxford, UK
| | - Valerie Kapos
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | - Neil Burgess
- UN Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK
| | | | - Piero Visconti
- Biodiversity and Natural Resources Program (BNR), International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria.
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8
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Feng X, Merow C, Liu Z, Park DS, Roehrdanz PR, Maitner B, Newman EA, Boyle BL, Lien A, Burger JR, Pires MM, Brando PM, Bush MB, McMichael CNH, Neves DM, Nikolopoulos EI, Saleska SR, Hannah L, Breshears DD, Evans TP, Soto JR, Ernst KC, Enquist BJ. How deregulation, drought and increasing fire impact Amazonian biodiversity. Nature 2021; 597:516-521. [PMID: 34471291 DOI: 10.1038/s41586-021-03876-7] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 08/04/2021] [Indexed: 02/08/2023]
Abstract
Biodiversity contributes to the ecological and climatic stability of the Amazon Basin1,2, but is increasingly threatened by deforestation and fire3,4. Here we quantify these impacts over the past two decades using remote-sensing estimates of fire and deforestation and comprehensive range estimates of 11,514 plant species and 3,079 vertebrate species in the Amazon. Deforestation has led to large amounts of habitat loss, and fires further exacerbate this already substantial impact on Amazonian biodiversity. Since 2001, 103,079-189,755 km2 of Amazon rainforest has been impacted by fires, potentially impacting the ranges of 77.3-85.2% of species that are listed as threatened in this region5. The impacts of fire on the ranges of species in Amazonia could be as high as 64%, and greater impacts are typically associated with species that have restricted ranges. We find close associations between forest policy, fire-impacted forest area and their potential impacts on biodiversity. In Brazil, forest policies that were initiated in the mid-2000s corresponded to reduced rates of burning. However, relaxed enforcement of these policies in 2019 has seemingly begun to reverse this trend: approximately 4,253-10,343 km2 of forest has been impacted by fire, leading to some of the most severe potential impacts on biodiversity since 2009. These results highlight the critical role of policy enforcement in the preservation of biodiversity in the Amazon.
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Affiliation(s)
- Xiao Feng
- Department of Geography, Florida State University, Tallahassee, FL, USA.
| | - Cory Merow
- Eversource Energy Center and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Zhihua Liu
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
| | - Daniel S Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN, USA.,Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, USA
| | - Patrick R Roehrdanz
- The Moore Center for Science, Conservation International, Arlington, VA, USA
| | - Brian Maitner
- Eversource Energy Center and Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.,Arizona Institutes for Resilience, University of Arizona, Tucson, AZ, USA
| | - Brad L Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.,Hardner & Gullison Associates, Amherst, NH, USA
| | - Aaron Lien
- Arizona Institutes for Resilience, University of Arizona, Tucson, AZ, USA.,School of Natural Resources and the Environment, University of Arizona, Tucson, AZ, USA
| | - Joseph R Burger
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.,Arizona Institutes for Resilience, University of Arizona, Tucson, AZ, USA.,Department of Biology, University of Kentucky, Lexington, KY, USA
| | - Mathias M Pires
- Departamento de Biologia Animal, Universidade Estadual de Campinas, Campinas, Brazil
| | - Paulo M Brando
- Department of Earth System Science, University of California, Irvine, Irvine, CA, USA.,Woodwell Climate Research Center, Falmouth, MA, USA.,Instituto de Pesquisa Ambiental da Amazônia (IPAM), Brasilia, Brazil
| | - Mark B Bush
- Insitute for Global Ecology, Florida Institute of Technology, Melbourne, FL, USA
| | - Crystal N H McMichael
- Department of Ecosystem and Landscape Dynamics, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Danilo M Neves
- Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Brazil
| | - Efthymios I Nikolopoulos
- Department of Mechanical and Civil Engineering, Florida Institute of Technology, Melbourne, FL, USA
| | - Scott R Saleska
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Lee Hannah
- The Moore Center for Science, Conservation International, Arlington, VA, USA
| | - David D Breshears
- School of Natural Resources and the Environment, University of Arizona, Tucson, AZ, USA
| | - Tom P Evans
- School of Geography, Development and Environment, University of Arizona, Tucson, AZ, USA
| | - José R Soto
- School of Natural Resources and the Environment, University of Arizona, Tucson, AZ, USA
| | - Kacey C Ernst
- Department of Epidemiology and Biostatistics, College of Public Health, University of Arizona, Tucson, AZ, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.,The Santa Fe Institute, Santa Fe, NM, USA
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9
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Lourenço J, Newman EA, Ventura JA, Milanez CRD, Thomaz LD, Wandekoken DT, Enquist BJ. Soil‐associated drivers of plant traits and functional composition in Atlantic Forest coastal tree communities. Ecosphere 2021. [DOI: 10.1002/ecs2.3629] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- Jehová Lourenço
- Departamento de Ciências Biológicas Programa de Pós‐graduação em Biologia Vegetal Universidade Federal do Espírito Santo Vitória Espírito Santo Brasil
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona 85721 USA
- Département des Sciences Biologiques Centre d’étude de la forêt Université du Québec à Montréal 141 Avenue du Président‐Kennedy Montreal Quebec H2X 1Y4 Canada
| | - Erica A. Newman
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona 85721 USA
- Arizona Institutes for Resilience University of Arizona Tucson Arizona 85721 USA
| | - José A. Ventura
- Departamento de Ciências Biológicas Programa de Pós‐graduação em Biologia Vegetal Universidade Federal do Espírito Santo Vitória Espírito Santo Brasil
- Instituto Capixaba de Pesquisa Assistência Técnica e Extensão Rural Vitória Espírito Santo Brasil
| | - Camilla Rozindo Dias Milanez
- Departamento de Ciências Biológicas Programa de Pós‐graduação em Biologia Vegetal Universidade Federal do Espírito Santo Vitória Espírito Santo Brasil
| | - Luciana Dias Thomaz
- Departamento de Ciências Biológicas Universidade Federal do Espírito Santo Herbário VIES Vitória Espírito Santo Brasil
| | - Douglas Tinoco Wandekoken
- Departamento de Ciências Biológicas Programa de Pós‐graduação em Biologia Vegetal Universidade Federal do Espírito Santo Vitória Espírito Santo Brasil
| | - Brian J. Enquist
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona 85721 USA
- The Santa Fe Institute Santa Fe New Mexico 87501 USA
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Pires MM, O'Donnell JL, Burkle LA, Díaz‐Castelazo C, Hembry DH, Yeakel JD, Newman EA, Medeiros LP, Aguiar MAM, Guimarães PR. The indirect paths to cascading effects of extinctions in mutualistic networks. Ecology 2020; 101:e03080. [DOI: 10.1002/ecy.3080] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 04/07/2020] [Accepted: 04/14/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Mathias M. Pires
- Departamento de Biologia Animal Instituto de Biologia Universidade Estadual de Campinas Campinas 13.083-862 São Paulo Brazil
| | - James L. O'Donnell
- School of Marine and Environmental Affairs University of Washington Seattle WA 98105 Washington USA
| | - Laura A. Burkle
- Department of Ecology Montana State University Bozeman MT 59717 Montana USA
| | - Cecilia Díaz‐Castelazo
- Red de Interacciones Multitróficas Instituto de Ecología, A.C. Xalapa VER 11 351 Veracruz México
| | - David H. Hembry
- Department of Entomology Cornell University Ithaca NY 14853 New York USA
- Department of Ecology and Evolutionary Biology University of Arizona Tucson AZ 85721 Arizona USA
| | - Justin D. Yeakel
- School of Natural Sciences University of California Merced CA 95343 California USA
| | - Erica A. Newman
- Department of Ecology and Evolutionary Biology University of Arizona Tucson AZ 85721 Arizona USA
| | - Lucas P. Medeiros
- Department of Civil and Environmental Engineering MIT Cambridge MA 02142 Massachusetts USA
| | - Marcus A. M. Aguiar
- Instituto de Física “Gleb Wataghin” Universidade Estadual de Campinas Campinas 13083-859 São Paulo Brazil
| | - Paulo R. Guimarães
- Departamento de Ecologia Instituto de Biociências Universidade de São Paulo São Paulo 05508-090 Brazil
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11
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Newman EA, Wilber MQ, Kopper KE, Moritz MA, Falk DA, McKenzie D, Harte J. Disturbance macroecology: a comparative study of community structure metrics in a high‐severity disturbance regime. Ecosphere 2020. [DOI: 10.1002/ecs2.3022] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Affiliation(s)
- Erica A. Newman
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona 85721 USA
- School of Natural Resources and the Environment University of Arizona Tucson Arizona 85721 USA
| | - Mark Q. Wilber
- Ecology, Evolution, and Marine Biology University of California, Santa Barbara Santa Barbara California 93106 USA
| | - Karen E. Kopper
- North Cascades National Park 7280 Ranger Station Road Marblemount Washington 98267 USA
| | - Max A. Moritz
- Agriculture and Natural Resources Division University of California Cooperative Extension Santa Barbara California USA
- Bren School of Environmental Science and Management University of California at Santa Barbara Santa Barbara California 93106 USA
| | - Donald A. Falk
- School of Natural Resources and the Environment University of Arizona Tucson Arizona 85721 USA
| | - Don McKenzie
- School of Environmental and Forest Sciences University of Washington Anderson Hall Seattle Washington 98195 USA
| | - John Harte
- Department of Environmental Science, Policy, and Management University of California at Berkeley 130 Mulford Hall Berkeley California 94720 USA
- Energy and Resources Group University of California at Berkeley 310 Barrows Hall Berkeley California 94720 USA
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12
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Enquist BJ, Feng X, Boyle B, Maitner B, Newman EA, Jørgensen PM, Roehrdanz PR, Thiers BM, Burger JR, Corlett RT, Couvreur TLP, Dauby G, Donoghue JC, Foden W, Lovett JC, Marquet PA, Merow C, Midgley G, Morueta-Holme N, Neves DM, Oliveira-Filho AT, Kraft NJB, Park DS, Peet RK, Pillet M, Serra-Diaz JM, Sandel B, Schildhauer M, Šímová I, Violle C, Wieringa JJ, Wiser SK, Hannah L, Svenning JC, McGill BJ. The commonness of rarity: Global and future distribution of rarity across land plants. Sci Adv 2019; 5:eaaz0414. [PMID: 31807712 PMCID: PMC6881168 DOI: 10.1126/sciadv.aaz0414] [Citation(s) in RCA: 107] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 11/04/2019] [Indexed: 05/21/2023]
Abstract
A key feature of life's diversity is that some species are common but many more are rare. Nonetheless, at global scales, we do not know what fraction of biodiversity consists of rare species. Here, we present the largest compilation of global plant diversity to quantify the fraction of Earth's plant biodiversity that are rare. A large fraction, ~36.5% of Earth's ~435,000 plant species, are exceedingly rare. Sampling biases and prominent models, such as neutral theory and the k-niche model, cannot account for the observed prevalence of rarity. Our results indicate that (i) climatically more stable regions have harbored rare species and hence a large fraction of Earth's plant species via reduced extinction risk but that (ii) climate change and human land use are now disproportionately impacting rare species. Estimates of global species abundance distributions have important implications for risk assessments and conservation planning in this era of rapid global change.
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Affiliation(s)
- Brian J. Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
- Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM 87501, USA
| | - Xiao Feng
- Institute of the Environment, University of Arizona, Tucson, AZ 85721, USA
| | - Brad Boyle
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - Brian Maitner
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - Erica A. Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
- Institute of the Environment, University of Arizona, Tucson, AZ 85721, USA
| | | | - Patrick R. Roehrdanz
- Betty and Gordon Moore Center for Science, Conservation International, 2011 Crystal Dr., Arlington, VA 22202, USA
| | - Barbara M. Thiers
- New York Botanical Garden, 2900 Southern Blvd., Bronx, NY 10348, USA
| | - Joseph R. Burger
- Institute of the Environment, University of Arizona, Tucson, AZ 85721, USA
| | - Richard T. Corlett
- Centre for Integrative Conservation, Xishuangbanna Tropical Botanical Garden and Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Menglun, Yunnan, China
| | | | - Gilles Dauby
- AMAP, IRD, CIRAD, CNRS, INRA, Université Montpellier, Montpellier, France
| | | | - Wendy Foden
- Cape Research Centre, South African National Parks, Tokai, 7947 Cape Town, South Africa
| | - Jon C. Lovett
- School of Geography, University of Leeds, Leeds, UK
- Royal Botanic Gardens, Kew, Richmond, Surrey, UK
| | - Pablo A. Marquet
- Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM 87501, USA
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, CP 8331150 Santiago, Chile
- Instituto de Ecología y Biodiversidad (IEB), Laboratorio Internacional de Cambio Global and Centro de Cambio Global UC, Chile
| | - Cory Merow
- Department of Ecology and Evolutionary Biology, University of Connecticut, CT 06269, USA
| | - Guy Midgley
- Department of Botany and Zoology, Stellenbosch University, Stellenbosch, South Africa
| | - Naia Morueta-Holme
- Center for Macroecology, Evolution and University of Copenhagen, Universitetsparken 15, Building 3, DK-2100 Copenhagen Ø, Denmark
| | - Danilo M. Neves
- Department of Botany, Federal University of Minas Gerais, Belo Horizonte 31270-901, Minas Gerais, Brazil
| | - Ary T. Oliveira-Filho
- Department of Botany, Federal University of Minas Gerais, Belo Horizonte 31270-901, Minas Gerais, Brazil
| | - Nathan J. B. Kraft
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Daniel S. Park
- Department of Organismic and Evolutionary Biology, Harvard University, MA 02138, USA
| | - Robert K. Peet
- Department of Biology, University of North Carolina, NC 27599, USA
| | - Michiel Pillet
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | | | - Brody Sandel
- Department of Biology, Santa Clara University, Santa Clara, CA 95053, USA
| | - Mark Schildhauer
- National Center for Ecological Analysis and Synthesis, Santa Barbara, CA 93101, USA
| | - Irena Šímová
- Centre for Theoretical Study, Charles University, Prague 1, Czech Republic
- Department of Ecology, Faculty of Sciences, Charles University, Czech Republic
| | - Cyrille Violle
- Université Montpellier, CNRS, EPHE, IRD, Université Paul Valéry Montpellier 3, Montpellier, France
| | - Jan J. Wieringa
- Naturalis Biodiversity Center, Darwinweg 2, Leiden, Netherlands
| | | | - Lee Hannah
- Betty and Gordon Moore Center for Science, Conservation International, 2011 Crystal Dr., Arlington, VA 22202, USA
| | - Jens-Christian Svenning
- Center for Biodiversity Dynamics in a Changing World (BIOCHANGE) and Section for Ecoinformatics and Biodiversity, Department of Bioscience, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
| | - Brian J. McGill
- School of Biology and Ecology and Senator George J. Mitchell Center of Sustainability Solutions, University of Maine, Orono, ME 04469, USA
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de Aguiar MAM, Newman EA, Pires MM, Yeakel JD, Boettiger C, Burkle LA, Gravel D, Guimarães PR, O'Donnell JL, Poisot T, Fortin MJ, Hembry DH. Revealing biases in the sampling of ecological interaction networks. PeerJ 2019; 7:e7566. [PMID: 31534845 PMCID: PMC6727833 DOI: 10.7717/peerj.7566] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 07/29/2019] [Indexed: 11/20/2022] Open
Abstract
The structure of ecological interactions is commonly understood through analyses of interaction networks. However, these analyses may be sensitive to sampling biases with respect to both the interactors (the nodes of the network) and interactions (the links between nodes), because the detectability of species and their interactions is highly heterogeneous. These ecological and statistical issues directly affect ecologists’ abilities to accurately construct ecological networks. However, statistical biases introduced by sampling are difficult to quantify in the absence of full knowledge of the underlying ecological network’s structure. To explore properties of large-scale ecological networks, we developed the software EcoNetGen, which constructs and samples networks with predetermined topologies. These networks may represent a wide variety of communities that vary in size and types of ecological interactions. We sampled these networks with different mathematical sampling designs that correspond to methods used in field observations. The observed networks generated by each sampling process were then analyzed with respect to the number of components, size of components and other network metrics. We show that the sampling effort needed to estimate underlying network properties depends strongly both on the sampling design and on the underlying network topology. In particular, networks with random or scale-free modules require more complete sampling to reveal their structure, compared to networks whose modules are nested or bipartite. Overall, modules with nested structure were the easiest to detect, regardless of the sampling design used. Sampling a network starting with any species that had a high degree (e.g., abundant generalist species) was consistently found to be the most accurate strategy to estimate network structure. Because high-degree species tend to be generalists, abundant in natural communities relative to specialists, and connected to each other, sampling by degree may therefore be common but unintentional in empirical sampling of networks. Conversely, sampling according to module (representing different interaction types or taxa) results in a rather complete view of certain modules, but fails to provide a complete picture of the underlying network. To reduce biases introduced by sampling methods, we recommend that these findings be incorporated into field design considerations for projects aiming to characterize large species interaction networks.
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Affiliation(s)
- Marcus A M de Aguiar
- Instituto de Física "Gleb Wataghin", Universidade Estadual de Campinas, Campinas, São Paulo, Brazil
| | - Erica A Newman
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
| | - Mathias M Pires
- Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil
| | - Justin D Yeakel
- School of Natural Sciences, University of California, Merced, CA, USA.,Santa Fe Institute, Santa Fe, NM, USA
| | - Carl Boettiger
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, CA, USA
| | - Laura A Burkle
- Department of Ecology, Montana State University, Bozeman, MT, USA
| | - Dominique Gravel
- Département de Biologie, Université de Sherbrooke, Sherbrooke, QC, Canada
| | - Paulo R Guimarães
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
| | - James L O'Donnell
- School of Marine and Environmental Affairs, University of Washington, Seattle, WA, USA
| | - Timothée Poisot
- Département de Sciences Biologiques, Université de Montréal, Montréal, QC, Canada.,Québec Centre for Biodiversity Sciences, Montréal, QC, Canada
| | - Marie-Josée Fortin
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada
| | - David H Hembry
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.,Department of Entomology, Cornell University, Ithaca, NY, USA
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14
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Bertram J, Newman EA, Dewar RC. Comparison of two maximum entropy models highlights the metabolic structure of metacommunities as a key determinant of local community assembly. Ecol Modell 2019. [DOI: 10.1016/j.ecolmodel.2019.108720] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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15
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16
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17
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Delmas E, Besson M, Brice MH, Burkle LA, Dalla Riva GV, Fortin MJ, Gravel D, Guimarães PR, Hembry DH, Newman EA, Olesen JM, Pires MM, Yeakel JD, Poisot T. Analysing ecological networks of species interactions. Biol Rev Camb Philos Soc 2019; 94:16-36. [PMID: 29923657 DOI: 10.1111/brv.12433] [Citation(s) in RCA: 180] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Revised: 05/08/2018] [Accepted: 05/14/2018] [Indexed: 01/24/2023]
Abstract
Network approaches to ecological questions have been increasingly used, particularly in recent decades. The abstraction of ecological systems - such as communities - through networks of interactions between their components indeed provides a way to summarize this information with single objects. The methodological framework derived from graph theory also provides numerous approaches and measures to analyze these objects and can offer new perspectives on established ecological theories as well as tools to address new challenges. However, prior to using these methods to test ecological hypotheses, it is necessary that we understand, adapt, and use them in ways that both allow us to deliver their full potential and account for their limitations. Here, we attempt to increase the accessibility of network approaches by providing a review of the tools that have been developed so far, with - what we believe to be - their appropriate uses and potential limitations. This is not an exhaustive review of all methods and metrics, but rather, an overview of tools that are robust, informative, and ecologically sound. After providing a brief presentation of species interaction networks and how to build them in order to summarize ecological information of different types, we then classify methods and metrics by the types of ecological questions that they can be used to answer from global to local scales, including methods for hypothesis testing and future perspectives. Specifically, we show how the organization of species interactions in a community yields different network structures (e.g., more or less dense, modular or nested), how different measures can be used to describe and quantify these emerging structures, and how to compare communities based on these differences in structures. Within networks, we illustrate metrics that can be used to describe and compare the functional and dynamic roles of species based on their position in the network and the organization of their interactions as well as associated new methods to test the significance of these results. Lastly, we describe potential fruitful avenues for new methodological developments to address novel ecological questions.
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Affiliation(s)
- Eva Delmas
- Département de Sciences Biologiques, Université de Montréal, Montréal, H2V 2J7, Canada.,Québec Centre for Biodiversity Sciences, McGill University, Montréal, H3A 1B1, Canada
| | - Mathilde Besson
- Département de Sciences Biologiques, Université de Montréal, Montréal, H2V 2J7, Canada.,Québec Centre for Biodiversity Sciences, McGill University, Montréal, H3A 1B1, Canada
| | - Marie-Hélène Brice
- Département de Sciences Biologiques, Université de Montréal, Montréal, H2V 2J7, Canada.,Québec Centre for Biodiversity Sciences, McGill University, Montréal, H3A 1B1, Canada
| | - Laura A Burkle
- Department of Ecology, Montana State University, Bozeman, MT 59715, U.S.A
| | - Giulio V Dalla Riva
- Beaty Biodiversity Research Centre, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Marie-Josée Fortin
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, M5S 3B2, Canada
| | - Dominique Gravel
- Québec Centre for Biodiversity Sciences, McGill University, Montréal, H3A 1B1, Canada.,Département de Biologie, Université de Sherbrooke, Sherbrooke, J1K 2R1, Canada
| | - Paulo R Guimarães
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-090, Brazil
| | - David H Hembry
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, U.S.A
| | - Erica A Newman
- School of Natural Resources and Environment, University of Arizona, Tucson, AZ 85721, U.S.A.,Pacific Wildland Fire Sciences Laboratory, USDA Forest Service, Seattle, WA 98103, U.S.A
| | - Jens M Olesen
- Department of Bioscience, Aarhus University, Aarhus, 8000, Denmark
| | - Mathias M Pires
- Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, 13083-862, Brazil
| | - Justin D Yeakel
- Life & Environmental Sciences, University of California Merced, Merced, CA 95343, U.S.A.,Santa Fe Institute, Santa Fe, NM 87501, U.S.A
| | - Timothée Poisot
- Département de Sciences Biologiques, Université de Montréal, Montréal, H2V 2J7, Canada.,Québec Centre for Biodiversity Sciences, McGill University, Montréal, H3A 1B1, Canada
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Newman EA, Winkler CA, Hembry DH. Effects of anthropogenic wildfire in low-elevation Pacific island vegetation communities in French Polynesia. PeerJ 2018; 6:e5114. [PMID: 29942716 PMCID: PMC6015486 DOI: 10.7717/peerj.5114] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2017] [Accepted: 06/07/2018] [Indexed: 11/20/2022] Open
Abstract
Anthropogenic (or human-caused) wildfire is an increasingly important driver of ecological change on Pacific islands including southeastern Polynesia, but fire ecology studies are almost completely absent for this region. Where observations do exist, they mostly represent descriptions of fire effects on plant communities before the introduction of invasive species in the modern era. Understanding the effects of wildfire in southeastern Polynesian island vegetation communities can elucidate which species may become problematic invasives with continued wildfire activity. We investigate the effects of wildfire on vegetation in three low-elevation sites (45-379 m) on the island of Mo'orea in the Society Islands, French Polynesia, which are already heavily impacted by past human land use and invasive exotic plants, but retain some native flora. In six study areas (three burned and three unburned comparisons), we placed 30 transects across sites and collected species and abundance information at 390 points. We analyzed each local community of plants in three categories: natives, those introduced by Polynesians before European contact (1767 C.E.), and those introduced since European contact. Burned areas had the same or lower mean species richness than paired comparison sites. Although wildfire did not affect the proportions of native and introduced species, it may increase the abundance of introduced species on some sites. Non-metric multidimensional scaling indicates that (not recently modified) comparison plant communities are more distinct from one another than are those on burned sites. We discuss conservation concerns for particular native plants absent from burned sites, as well as invasive species (including Lantana camara and Paraserianthes falcataria) that may be promoted by fire in the Pacific.
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Affiliation(s)
- Erica A Newman
- School of Natural Resources and the Environment, University of Arizona, Tucson, AZ, USA.,Pacific Wildland Fire Sciences Laboratory, USDA Forest Service, Seattle, WA, USA
| | - Carlea A Winkler
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, Berkeley, CA, USA
| | - David H Hembry
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA
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Hembry DH, Raimundo RLG, Newman EA, Atkinson L, Guo C, Guimarães PR, Gillespie RG. Does biological intimacy shape ecological network structure? A test using a brood pollination mutualism on continental and oceanic islands. J Anim Ecol 2018; 87:1160-1171. [DOI: 10.1111/1365-2656.12841] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Accepted: 03/14/2018] [Indexed: 12/29/2022]
Affiliation(s)
- David H. Hembry
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Rafael L. G. Raimundo
- Departamento de Ecologia Instituto de Biociências Universidade de São Paulo São Paulo SP Brazil
| | - Erica A. Newman
- School of Natural Resources and the Environment University of Arizona Tucson Arizona
| | - Lesje Atkinson
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| | - Chang Guo
- Department of Integrative Biology University of California Berkeley California
| | - Paulo R. Guimarães
- Departamento de Ecologia Instituto de Biociências Universidade de São Paulo São Paulo SP Brazil
| | - Rosemary G. Gillespie
- Department of Environmental Science, Policy, and Management University of California Berkeley California
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Newman EA, Potts JB, Tingley MW, Vaughn C, Stephens SL. Chaparral bird community responses to prescribed fire and shrub removal in three management seasons. J Appl Ecol 2018. [DOI: 10.1111/1365-2664.13099] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Erica A. Newman
- Department of Environmental Science, Policy, and Management; University of California at Berkeley; Berkeley CA USA
- School of Natural Resources and the Environment; University of Arizona; Tucson AZ USA
- Pacific Wildland Fire Sciences Lab; US Forest Service; Seattle WA USA
| | - Jennifer B. Potts
- Department of Environmental Science, Policy, and Management; University of California at Berkeley; Berkeley CA USA
- Bouverie Preserve, Audubon Canyon Ranch; Glen Ellen CA USA
| | - Morgan W. Tingley
- Department of Ecology and Evolutionary Biology; University of Connecticut; Storrs CT USA
| | - Charles Vaughn
- University of California Hopland Research & Extension Center; Hopland CA USA
| | - Scott L. Stephens
- Department of Environmental Science, Policy, and Management; University of California at Berkeley; Berkeley CA USA
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Kitzes J, Berlow E, Conlisk E, Erb K, Iha K, Martinez N, Newman EA, Plutzar C, Smith AB, Harte J. Consumption-Based Conservation Targeting: Linking Biodiversity Loss to Upstream Demand through a Global Wildlife Footprint. Conserv Lett 2017; 10:531-538. [PMID: 29104616 PMCID: PMC5655738 DOI: 10.1111/con4.12321] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 10/06/2016] [Indexed: 12/01/2022] Open
Abstract
Although most conservation efforts address the direct, local causes of biodiversity loss, effective long-term conservation will require complementary efforts to reduce the upstream economic pressures, such as demands for food and forest products, which ultimately drive these downstream losses. Here, we present a wildlife footprint analysis that links global losses of wild birds to consumer purchases across 57 economic sectors in 129 regions. The United States, India, China, and Brazil have the largest regional wildlife footprints, while per-person footprints are highest in Mongolia, Australia, Botswana, and the United Arab Emirates. A US$100 purchase of bovine meat or rice products occupies approximately 0.1 km2 of wild bird ranges, displacing 1-2 individual birds, for 1 year. Globally significant importer regions, including Japan, the United Kingdom, Germany, Italy, and France, have large footprints that drive wildlife losses elsewhere in the world and represent important targets for consumption-focused conservation attention.
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Affiliation(s)
- Justin Kitzes
- Energy and Resources GroupUniversity of CaliforniaBerkeleyCA94720USA
| | | | - Erin Conlisk
- Lawrence Berkeley National LabBerkeleyCA94720USA
| | - Karlheinz Erb
- Institute of Social Ecology Vienna (SEC)Alpen‐Adria Universitaet Klagenfurt ‐ Wien ‐ GrazViennaAustria
| | | | - Neo Martinez
- Pacfic Ecoinformatics and Computational Ecology LabBerkeleyCA94703USA
| | - Erica A. Newman
- Energy and Resources Group and Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCA94720USA
| | - Christoph Plutzar
- Institute of Social Ecology Vienna (SEC)Alpen‐Adria Universitaet Klagenfurt ‐ Wien ‐ GrazViennaAustria
| | | | - John Harte
- Energy and Resources Group and Department of Environmental Science, Policy, and ManagementUniversity of CaliforniaBerkeleyCA94720USA
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Newman EA, Eisen L, Eisen RJ, Fedorova N, Hasty JM, Vaughn C, Lane RS. Borrelia burgdorferi sensu lato spirochetes in wild birds in northwestern California: associations with ecological factors, bird behavior and tick infestation. PLoS One 2015; 10:e0118146. [PMID: 25714376 PMCID: PMC4340631 DOI: 10.1371/journal.pone.0118146] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2014] [Accepted: 01/05/2015] [Indexed: 11/26/2022] Open
Abstract
Although Borrelia burgdorferi sensu lato (s.l.) are found in a great diversity of vertebrates, most studies in North America have focused on the role of mammals as spirochete reservoir hosts. We investigated the roles of birds as hosts for subadult Ixodes pacificus ticks and potential reservoirs of the Lyme disease spirochete B. burgdorferi sensu stricto (s.s.) in northwestern California. Overall, 623 birds representing 53 species yielded 284 I. pacificus larvae and nymphs. We used generalized linear models and zero-inflated negative binomial models to determine associations of bird behaviors, taxonomic relationships and infestation by I. pacificus with borrelial infection in the birds. Infection status in birds was best explained by taxonomic order, number of infesting nymphs, sampling year, and log-transformed average body weight. Presence and counts of larvae and nymphs could be predicted by ground- or bark-foraging behavior and contact with dense oak woodland. Molecular analysis yielded the first reported detection of Borrelia bissettii in birds. Moreover, our data suggest that the Golden-crowned Sparrow (Zonotrichia atricapilla), a non-resident species, could be an important reservoir for B. burgdorferi s.s. Of 12 individual birds (9 species) that carried B. burgdorferi s.l.-infected larvae, no birds carried the same genospecies of B. burgdorferi s.l. in their blood as were present in the infected larvae removed from them. Possible reasons for this discrepancy are discussed. Our study is the first to explicitly incorporate both taxonomic relationships and behaviors as predictor variables to identify putative avian reservoirs of B. burgdorferi s.l. Our findings underscore the importance of bird behavior to explain local tick infestation and Borrelia infection in these animals, and suggest the potential for bird-mediated geographic spread of vector ticks and spirochetes in the far-western United States.
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Affiliation(s)
- Erica A. Newman
- Energy and Resources Group, University of California, 310 Barrows Hall, Berkeley, CA 94720, United States of America
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, Berkeley, CA 94720, United States of America
| | - Lars Eisen
- Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, Colorado 80523, United States of America
- Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado 80522, United States of America
| | - Rebecca J. Eisen
- Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado 80522, United States of America
| | - Natalia Fedorova
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, Berkeley, CA 94720, United States of America
| | - Jeomhee M. Hasty
- Hawaii Department of Health, Sanitation Branch, Vector Control, Honolulu, Hawaii 96813, United States of America
| | - Charles Vaughn
- University of California Hopland Research & Extension Center, Hopland, CA 95449, United States of America
| | - Robert S. Lane
- Department of Environmental Science, Policy, and Management, University of California, 130 Mulford Hall, Berkeley, CA 94720, United States of America
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Harte J, Newman EA. Maximum information entropy: a foundation for ecological theory. Trends Ecol Evol 2014; 29:384-9. [PMID: 24863182 DOI: 10.1016/j.tree.2014.04.009] [Citation(s) in RCA: 93] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2013] [Revised: 04/20/2014] [Accepted: 04/24/2014] [Indexed: 10/25/2022]
Abstract
The maximum information entropy (MaxEnt) principle is a successful method of statistical inference that has recently been applied to ecology. Here, we show how MaxEnt can accurately predict patterns such as species-area relationships (SARs) and abundance distributions in macroecology and be a foundation for ecological theory. We discuss the conceptual foundation of the principle, why it often produces accurate predictions of probability distributions in science despite not incorporating explicit mechanisms, and how mismatches between predictions and data can shed light on driving mechanisms in ecology. We also review possible future extensions of the maximum entropy theory of ecology (METE), a potentially important foundation for future developments in ecological theory.
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Affiliation(s)
- John Harte
- Energy and Resources Group, University of California at Berkeley, 310 Barrows Hall, Berkeley, CA 94720, USA; Department of Environmental Science, Policy, and Management, University of California at Berkeley, 130 Mulford Hall, Berkeley, CA 94720, USA.
| | - Erica A Newman
- Energy and Resources Group, University of California at Berkeley, 310 Barrows Hall, Berkeley, CA 94720, USA; Department of Environmental Science, Policy, and Management, University of California at Berkeley, 130 Mulford Hall, Berkeley, CA 94720, USA
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Harte J, Kitzes J, Newman EA, Rominger AJ. Taxon categories and the universal species-area relationship (a comment on Šizling et al., “between geometry and biology:the problem of universality of the species-area relationship”). Am Nat 2013; 181:282-7; discussion 288-90. [PMID: 23348782 DOI: 10.1086/668821] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
A theory of macroecology based on the maximum information entropy (MaxEnt) inference procedure predicts that the log-log slope of the species-area relationship (SAR) at any spatial scale is a specified function of the ratio of abundance, N(A), to species richness, S(A), at that scale. The theory thus predicts, in generally good agreement with observation, that all SARs collapse onto a specified universal curve when local slope, z(A), is plotted against N(A)/S(A). A recent publication, however, argues that if it is assumed that patterns in macroecology are independent of the taxonomic choices that define assemblages of species, then this principle of "taxon invariance" precludes the MaxEnt-predicted universality of the SAR. By distinguishing two dimensions of the notion of taxon invariance, we show that while the MaxEnt-based theory predicts universality regardless of the taxonomic choices that define an assemblage of species, the biological characteristics of assemblages should under MaxEnt, and do in reality, influence the realism of the predictions.
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Affiliation(s)
- John Harte
- Energy and Resources Group, University of California, Berkeley, California 94720, USA.
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Abstract
Rapid changes in extracellular K+ concentration ([K+](o)) in the mammalian CNS are counteracted by simple passive diffusion as well as by cellular mechanisms of K+ clearance. Buffering of [K+](o) can occur via glial or neuronal uptake of K+ ions through transporters or K+-selective channels. The best studied mechanism for [K+](o) buffering in the brain is called K+ spatial buffering, wherein the glial syncytium disperses local extracellular K+ increases by transferring K+ ions from sites of elevated [K+](o) to those with lower [K+](o). In recent years, K+ spatial buffering has been implicated or directly demonstrated by a variety of experimental approaches including electrophysiological and optical methods. A specialized form of spatial buffering named K+ siphoning takes place in the vertebrate retina, where glial Muller cells express inwardly rectifying K+ channels (Kir channels) positioned in the membrane domains near to the vitreous humor and blood vessels. This highly compartmentalized distribution of Kir channels in retinal glia directs K+ ions from the synaptic layers to the vitreous humor and blood vessels. Here, we review the principal mechanisms of [K+](o) buffering in the CNS and recent molecular studies on the structure and functions of glial Kir channels. We also discuss intriguing new data that suggest a close physical and functional relationship between Kir and water channels in glial cells.
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Affiliation(s)
- P Kofuji
- Department of Neuroscience, University of Minnesota, 6-145 Jackson Hall, 321 Church Street SE, Minneapolis, MN 55455, USA.
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Affiliation(s)
- E A Newman
- Department of Neuroscience, University of Minnesota, 6-145 Jackson Hall, 321 Church Street SE, Minneapolis, MN 55455, USA.
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Newman EA. Propagation of intercellular calcium waves in retinal astrocytes and Müller cells. J Neurosci 2001; 21:2215-23. [PMID: 11264297 PMCID: PMC2409971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023] Open
Abstract
Intercellular Ca(2+) waves are believed to propagate through networks of glial cells in culture in one of two ways: by diffusion of IP(3) between cells through gap junctions or by release of ATP, which functions as an extracellular messenger. Experiments were conducted to determine the mechanism of Ca(2+) wave propagation between glial cells in an intact CNS tissue. Calcium waves were imaged in the acutely isolated rat retina with the Ca(2+) indicator dye fluo-4. Mechanical stimulation of astrocyte somata evoked Ca(2+) waves that propagated through both astrocytes and Müller cells. Octanol (0.5 mm), which blocks coupling between astrocytes and Müller cells, did not reduce propagation into Müller cells. Purinergic receptor antagonists suramin (100 microm), PPADS (20-50 microm), and apyrase (80 U/ml), in contrast, substantially reduced wave propagation into Müller cells (wave radii reduced to 16-61% of control). Suramin also reduced wave propagation from Müller cell to Müller cell (51% of control). Purinergic antagonists reduced wave propagation through astrocytes to a lesser extent (64-81% of control). Mechanical stimulation evoked the release of ATP, imaged with the luciferin-luciferase bioluminescence assay. Peak ATP concentration at the surface of the retina averaged 78 microm at the stimulation site and 6.8 microm at a distance of 100 microm. ATP release propagated outward from the stimulation site with a velocity of 41 microm/sec, somewhat faster than the 28 microm/sec velocity of Ca(2+) waves. Ejection of 3 microm ATP onto the retinal surface evoked propagated glial Ca(2+) waves. Together, these results indicate that Ca(2+) waves are propagated through retinal glial cells by two mechanisms. Waves are propagated through astrocytes principally by diffusion of an internal messenger, whereas waves are propagated from astrocytes to Müller cells and from Müller cells to other Müller cells primarily by the release of ATP.
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Affiliation(s)
- E A Newman
- Department of Neuroscience, University of Minnesota, Minneapolis, Minnesota 55455, USA.
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Kofuji P, Ceelen P, Zahs KR, Surbeck LW, Lester HA, Newman EA. Genetic inactivation of an inwardly rectifying potassium channel (Kir4.1 subunit) in mice: phenotypic impact in retina. J Neurosci 2000; 20:5733-40. [PMID: 10908613 PMCID: PMC2410027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023] Open
Abstract
The inwardly rectifying potassium channel Kir4.1 has been suggested to underlie the principal K(+) conductance of mammalian Müller cells and to participate in the generation of field potentials and regulation of extracellular K(+) in the retina. To further assess the role of Kir4.1 in the retina, we generated a mouse line with targeted disruption of the Kir4.1 gene (Kir4.1 -/-). Müller cells from Kir4.1 -/- mice were not labeled with an anti-Kir4.1 antibody, although they appeared morphologically normal when stained with an anti-glutamine synthetase antibody. In contrast, in Müller cells from wild-type littermate (Kir4.1 +/+) mice, Kir4.1 was present and localized to the proximal endfeet and perivascular processes. In situ whole-cell patch-clamp recordings showed a 10-fold increase in the input resistance and a large depolarization of Kir4.1 -/- Müller cells compared with Kir4.1 +/+ cells. The slow PIII response of the light-evoked electroretinogram (ERG), which is generated by K(+) fluxes through Müller cells, was totally absent in retinas from Kir4.1 -/- mice. The b-wave of the ERG, in contrast, was spared in the null mice. Overall, these results indicate that Kir4.1 is the principal K(+) channel subunit expressed in mouse Müller glial cells. The highly regulated localization and the functional properties of Kir4.1 in Müller cells suggest the involvement of this channel in the regulation of extracellular K(+) in the mouse retina.
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Affiliation(s)
- P Kofuji
- Departments of Neuroscience and Physiology, University of Minnesota, Minneapolis 55455, USA.
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Abstract
The eyecup preparation has traditionally been used to study retinal physiology in lower vertebrates and in some mammals. The procedures for preparing eyecups of the rat and mouse have not been described, however. We now describe methods for preparing and maintaining viable eyecups for these two species. Eyecups were everted over a plastic dome and held in place between the two halves of a superfusion chamber. Fluid exchange in the chamber was rapid, with near total exchange occurring in 9 s. Eyecup viability was tested by monitoring light-evoked retinal responses as the preparation aged. In both rat and mouse, the amplitude of the electroretinogram (ERG) b-wave decreased slowly, declining to 1/2 maximal amplitude in approximately 70 min. Light-evoked spike activity of neurons in the ganglion cell layer remained stable for approximately 3 h and attenuated responses were recorded for an additional 1-2 h. Eyecups were able to dark adapt. Retinal sensitivity, tested by monitoring b-wave amplitude, recovered following exposure to an adapting light.
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Affiliation(s)
- E A Newman
- Department of Neuroscience, University of Minnesota, Minneapolis 55455, USA.
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Abstract
OBJECTIVE To determine the occurrence of tail docking and beliefs about the practice in the Victorian dairy industry. DESIGN Survey responses were analysed using chi-square tests and by correlation and regression analyses to determine associations between husbandry practices and beliefs and to identify possible predictive variables in relation to docking. PROCEDURE A survey of the occurrence of docking and beliefs about the practice was conducted in 1997 using face-to-face interviews of 313 respondents at 234 Victorian dairy farms. RESULTS On average, 35% of dairy farms routinely docked cattle. The practice varied from 11 to 63% in different regions and 12% of stud farms docked their cows. Rubber rings were used on 75% of farms and the average age of the cow at docking was 18 months. Twenty-two percent of cows were docked at a level above the top of the udder and 54% were docked level with the top of the udder. Respondents that docked believed that milking was finished quicker, the risks of leptospirosis for the operator and mastitis for the cow were reduced, the cows were easier to handle, fly numbers were reduced and milk quality was improved. There was a general belief that intact tails could cause significant discomfort to the operator and that docking resulted in acute but not chronic pain. CONCLUSIONS Docking is an entrenched practice in the Victorian dairy industry. Those farmers who docked generally believed that it was a highly desirable farming practice with particular benefits for the operator.
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Affiliation(s)
- J L Barnett
- Animal Welfare Centre, Victorian Institute of Animal Science, Werribee
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Abstract
Sodium-bicarbonate cotransport in retinal glial cells was studied in the everted eyecup preparation of the rat. Intracellular pH was monitored with the indicator dye BCPCF and fluorescence confocal microscopy. Raising the K+ concentration from 3 to 12 mM in HCO3- -buffered perfusate evoked an intracellular alkalinization in both astrocytes and Müller cells. The alkalinization developed more rapidly and was larger in astrocytes. The K+ -induced alkalinization was HCO3- -dependent; it was reduced by 33% in astrocytes and 71% in Müller cells when HCO3- was removed from the perfusate. The alkalinization was effectively blocked by addition of 0.5 mM 4,4"-diisothiocyanato-stilbene-2,2'-disulfonic acid (DIDS). Removal of Na+ from the perfusate evoked a rapid acidification in both types of glial cells. The results indicate that astrocytes and Müller cells in situ in the rat retina possess an electrogenic Na+/HCO3- cotransporter.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis 55455, USA.
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Newman EA, Zahs KR. Modulation of neuronal activity by glial cells in the retina. J Neurosci 1998; 18:4022-8. [PMID: 9592083 PMCID: PMC2904245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Glial-neuronal communication was studied by monitoring the effect of intercellular glial Ca2+ waves on the electrical activity of neighboring neurons in the eyecup preparation of the rat. Calcium waves in astrocytes and Müller cells were initiated with a mechanical stimulus applied to the retinal surface. Changes in the light-evoked spike activity of neurons within the ganglion cell layer occurred when, and only when, these Ca2+ waves reached the neurons. Inhibition of activity was observed in 25 of 53 neurons (mean decrease in spike frequency, 28 +/- 2%). Excitation occurred in another five neurons (mean increase, 27 +/- 5%). Larger amplitude Ca2+ waves were associated with greater modulation of neuronal activity. Thapsigargin, which reduced the amplitude of the glial Ca2+ increases, also reduced the magnitude of neuronal modulation. Bicuculline and strychnine, inhibitory neurotransmitter antagonists, as well as 6-Nitro-7-sulphamoylbenzo[f]quinoxaline-2,3-dione (NBQX) and D(-)-2-amino-7-phosphonoheptanoic acid (D-AP7), glutamate antagonists, reduced the inhibition of neuronal activity associated with glial Ca2+ waves, suggesting that inhibition is mediated by inhibitory interneurons stimulated by glutamate release from glial cells. The results suggest that glial cells are capable of modulating the electrical activity of neurons within the retina and thus, may directly participate in information processing in the CNS.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis, Minnesota 55455, USA
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Zahs KR, Newman EA. Asymmetric gap junctional coupling between glial cells in the rat retina. Glia 1997; 20:10-22. [PMID: 9145301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Gap junctional communication between glial cells is thought to play a role in K+ spatial buffering, in the propagation of inter-astrocytic Ca2+ waves, and in glial-neuronal signaling. In the present study, we characterize dye coupling between astrocytes, and between astrocytes and Müller cells, in the isolated rat retina. Whole-cell patch recordings were obtained from retinal astrocytes and Müller cells and the cells filled with Lucifer Yellow and neurobiotin. Spread of Lucifer Yellow to two to ten neighboring astrocytes occurred in 90% of the astrocyte recordings. After fixation and incubation of the retina with fluorescent conjugated streptavidin, neurobiotin was seen to label clusters of 13-88 astrocytes, as well as > 100 Müller cells. In contrast, when Müller cells were filled with Lucifer Yellow and neurobiotin, both tracers were confined solely to the recorded Müller cell. The uncoupling agents octanol, halothane, and doxyl-stearic acid were tested for their ability to uncouple retinal glia in situ. All three agents eliminated the visible spread of Lucifer Yellow from the injected astrocyte and the spread of neurobiotin into Müller cells. However, only doxyl-stearic acid combined with octanol eliminated the spread of neurobiotin between astrocytes. These results demonstrate that astrocytes in the rat retina are coupled to each other and to Müller cells. The astrocyte-to-Müller cell coupling is asymmetric, allowing transfer of the tracer in the forward direction only. In addition, astrocyte-to-Müller cell coupling is more sensitive to the uncoupling agents tested than is astrocyte-to-astrocyte coupling.
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Affiliation(s)
- K R Zahs
- Department of Physiology, University of Minnesota, School of Medicine, Minneapolis 55455, USA
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Abstract
Calcium signals were recorded from glial cells in acutely isolated rat retina to determine whether Ca2+ waves occur in glial cells of intact central nervous system tissue. Chemical (adenosine triphosphate), electrical, and mechanical stimulation of astrocytes initiated increases in the intracellular concentration of Ca2+ that propagated at approximately 23 micrometers per second through astrocytes and Müller cells as intercellular waves. The Ca2+ waves persisted in the absence of extracellular Ca2+ but were largely abolished by thapsigargin and intracellular heparin, indicating that Ca2+ was released from intracellular stores. The waves did not evoke changes in cell membrane potential but traveled synchronously in astrocytes and Müller cells, suggesting a functional linkage between these two types of glial cells. Such glial Ca2+ waves may constitute an extraneuronal signaling pathway in the central nervous system.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, 435 Delaware Street, SE, Minneapolis, MN 55455, USA
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Newman EA. Acid efflux from retinal glial cells generated by sodium bicarbonate cotransport. J Neurosci 1996; 16:159-68. [PMID: 8613782 PMCID: PMC6578728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Sodium bicarbonate cotransport was studied in freshly dissociated Müller cells of the salamander retina. Variations in intracellular and extracellular pH evoked extracellular potassium concentration ([K+]o were recorded. Intracellular pH was measured by standard ratio imaging of the pH-sensitive dye BCECF, whereas extracellular pH was monitored by imaging BCECF fixed to coverslips under dissociated cells. Increasing [K+]o from 2.5 to 50 mM resulted in an intracellular alkalinization. The rate of alkalinization, 0.047 pH units/min, was reduced to 42% of control when HEPES was substituted for HCO3- and was reduced to 36% of control by the addition of 0.5 mM DIDS, a Na+/HCO3- cotransport blocker. The K(+)-evoked alkalinization was Cl(-)-independent and was not substantially reduced by amiloride or bumetanide. Increasing [K+]o to 50 mM also produced a rapid extracellular acidification, 0.01 to 0.05 pH units in amplitude. HEPES substitution and addition of 0.5 mM DIDS reduced the acidification to 7-8% of control, respectively. These results confirm the presence of a Na+/HCO3- cotransport system in salamander Müller cells and provide definitive evidence that glial cells can generate an extracellular acidification when [K+]o is increased. The K(+)-evoked extracellular acidification measured beneath cell endfeet was 304% of the amplitude of the acidification beneath cell somata, confirming that cotransporter sites are preferentially localized to the endfoot. The carbonic anhydrase inhibitor benzolamide (2 x 10(-5) M), which is poorly membrane permeant, increased the K(+)-evoked extracellular acidification to 269% of control, demonstrating that salamander Müller cells possess extracellular carbonic anhydrase.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis 55455, USA
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Abstract
Carbonic anhydrase activity was characterized in freshly dissociated Müller cells of the salamander retina. Intracellular pH was monitored using ratio imaging of the indicator dye BCECF as extracellular PCO2 was varied. The extracellular solution was switched rapidly (141 ms rise time) from a HEPES buffered to a CO2-HCO3- buffered solution (both pH 7.4). Introduction of CO2-HCO3- produced a rapid cell acidification. Cell pH dropped from a steady-state pH of 7.02 in HEPES solution to pH 6.81 in CO2-HCO3-. Methazolamide, a carbonic anhydrase inhibitor, dramatically reduced the initial rate of acidification, demonstrating that the acidification was produced by the carbonic anhydrase-catalyzed hydration of CO2. The initial rate of acidification, 52.6 pH units per min (0.88 pH units per s), was reduced approximately 150-fold to 0.36 pH units per min by 10(-3) M methazolamide. Half-maximal inhibition occurred at a methazolamide concentration of 5.6.10(-7) M. The carbonic anhydrase inhibitor acetazolamide (10(-3) M) also greatly reduced the rate of cell acidification. The latency to the onset of carbonic anhydrase inhibition was 660 ms for methazolamide and 7.5 s for acetazolamide. The carbonic anhydrase inhibitor benzolamide (10(-4) M, 4 min exposure), which is poorly membrane permeant, had little effect on the rate of cell acidification, indicating that the site of carbonic anhydrase action was intracellular. The activity of Müller cell carbonic anhydrase may help to buffer extracellular CO2 variations in the retina.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis 55455
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38
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Newman EA. Inward-rectifying potassium channels in retinal glial (Müller) cells. J Neurosci 1993; 13:3333-45. [PMID: 8340811 PMCID: PMC6576530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
The voltage- and K(+)-dependent properties of Müller cell currents and channels were characterized in freshly dissociated salamander Müller cells. In whole-cell voltage-clamp experiments, cells with endfeet intact and cells missing endfeet both displayed strong inward rectification. The rectification was similar in shape in both groups of cells but currents were 9.2 times larger in cells with endfeet. Ba2+ at 100 microM reduced the inward current to 6.8% of control amplitude. Decreasing external K+ concentration shifted the cell current-voltage (I-V) relation in a hyperpolarizing direction and reduced current magnitude. In multichannel, cell-attached patch-clamp experiments, patches from both endfoot and soma membrane displayed strong inward rectification. Currents were 38 times larger in endfoot patches. In single-channel, cell-attached patch-clamp experiments, inward-rectifying K+ channels were, in almost all cases, the only channels present in patches of endfoot, proximal process, and soma membrane. Channel conductance was 27.8 pS in 98 mM external K+. Reducing external K+ shifted the channel reversal potential in a hyperpolarizing direction and reduced channel conductance. Channel open probability varied as a function of voltage, being reduced at more negative potentials. Together, these observations demonstrate that the principal ion channel in all Müller cell regions is an inward-rectifying K+ channel. Channel density is far higher on the cell endfoot than in other cell regions. Whole-cell I-V plots of cells bathed in 12, 7, 4, and 2.5 mM K+ were fit by an equation including Boltzmann relation terms representing channel rectification and channel open probability. This equation was incorporated into a model of K+ dynamics in the retina to evaluate the significance of inward-rectifying channels to the spatial buffering/K+ siphoning mechanism of K+ regulation. Compared with ohmic channels, inward-rectifying channels increased the rate of K+ clearance from the retina by 23% for a 1 mM K+ increase and by 137% for a 9.5 mM K+ increase, demonstrating that Müller cell inward-rectifying channels enhance K+ regulation in the retina.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis 55455
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39
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Abstract
1. The relationship between the behavioural responses of laying hens to humans and productivity was determined at 16 commercial sheds from 14 farms. 2. A number of behaviour variables were moderately to highly correlated with production variables; for example, the proportion of birds that moved away from an approaching experimenter in an unfamiliar environment ('shute test') was negatively correlated with peak hen day production, (PKHDP). 3. Behavioural responses to humans accounted for between 23 and 63% of the variation in a number of production variables, including PKHDP and the duration of a high level of production. 4. Inclusion of farm factor variables increased the amount of variation accounted for by the behaviour variables. For example, adding the variable 'time/day spent in the shed by stockpeople' to the behaviour variables 'the proportion of birds that moved away from an approaching human' in the shute test and 'the number of times birds in cages adopted an erect posture' in response to an approaching human increased the variation accounted for in PKHDP from 53 to 61%. 5. The results suggest that fear of humans may be a factor that limits the productivity of commercial laying hens.
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Affiliation(s)
- J L Barnett
- Victorian Institute of Animal Science, Department of Food and Agriculture, Werribee, Australia
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40
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Newman EA. Sodium-bicarbonate cotransport in retinal Müller (glial) cells of the salamander. J Neurosci 1991; 11:3972-83. [PMID: 1744699 PMCID: PMC6575291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
An electrogenic Na+/HCO3- cotransport system was studied in freshly dissociated Müller cells of the salamander retina. Cotransporter currents were recorded from isolated cells using the whole-cell, voltage-clamp technique following the block of K+ conductance with external Ba2+ and internal Cs+. At constant pHo, an outward current was evoked when extracellular HCO3- concentration was raised by pressure ejecting a HCO3(-)-buffered solution onto the surface of cells bathed in nominally HCO3(-)-free solution. The HCO3(-)-evoked outward current was reduced to 4.4% of control by 0.5 mM DIDS (4,4'-diisothiocyanatostilbene-2,2'-disulfonate), to 28.8% of control by 2 mM DNDS (4,4'-dinitrostilbene-2,2'-disulfonate), and to 28.4% of control by 2 mM harmaline. Substitution of choline for Na+ in bath and ejection solutions reduced the response to 1.3% of control. Bicarbonate-evoked currents of normal magnitude were recorded when methane sulfonate was substituted for Cl- in bath, ejection, and intracellular solutions. Similarly, an outward current was evoked when extracellular Na+ concentration was raised in the presence of HCO3-. The Na(+)-evoked response was reduced to 16.2% of control by 2 mM DNDS and was abolished by removal of HCO3- from bath and ejection solutions. Taken together, these results (block by stilbenes and harmaline, HCO3- and Na+ dependence, Cl- independence) indicate that salamander Müller cells possess an electrogenic Na+/HCO3- cotransport system. Na+/HCO3- cotransporter sites were localized primarily at the endfoot region of Müller cells. Ejection of HCO3- onto the endfoot evoked outward currents 10 times larger than currents evoked by ejections onto the opposite (distal) end of the cell. The reversal potential of the cotransporter was determined by DNDS block of cotransport current. In the absence of a transmembrane HCO3- gradient, the reversal potential varied systematically as a function of the transmembrane Na+ gradient. The reversal potential was -0.1 mV for a [Na+]o:[Na+]i ratio of 1:1 and -25.2 mV for a Na+ gradient ratio of 7.4:1. Based on these values, the estimated stoichiometry of the cotransporter was 2.80 +/- 0.13:1 (HCO3-:Na+). Possible functions of the glial cell Na+/HCO3- cotransporter, including the regulation of CO2 in the retina and the regulation of cerebral blood flow, are discussed.
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Affiliation(s)
- E A Newman
- Department of Physiology, University of Minnesota, Minneapolis 55455
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Abstract
An electrogenic Na+/HCO3- cotransport system was identified and characterized in freshly dissociated salamander Müller (glial) cells. Under voltage-clamp, these cells generated an outward current when external HCO3- concentration [( HCO3-]o) was raised. This current was Na(+)-dependent, Cl(-)-independent, and was blocked by the stilbenes 4,4'-diisothiocyanato-stilbene-2,2'-disulfonate (DIDS) and 4,4'-dinitrostilbene-2,2'-disulfonate (DNDS), and by harmaline, demonstrating that the current was generated by a Na+/HCO3- cotransport system. Substantially larger currents were evoked when [HCO3-]o was raised at the Müller cell endfoot as compared to other cell regions, indicating that cotransporter sites are localized preferentially to the endfoot. The reversal potential of the current, which varied as a function of HCO3- and Na+ transmembrane gradients, indicated that the cotransporter has a HCO3-:Na+ stoichiometry of 3:1.
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Affiliation(s)
- E A Newman
- Eye Research Institute, Boston, Massachusetts 02114
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42
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Abstract
The effect of barium on Müller cell K+ conductance was evaluated in the tiger salamander using enzymatically dissociated cells and cells in situ (retinal slice and isolated retina). Barium effects were similar in both cases. In dissociated cells, 50 microM Ba2+ depolarized cells 14.7 mV and raised cell input resistance from a control value of 16.0 to 133 M omega. For cells in situ, 50 microM Ba2+ depolarized cells 6.9 mV and raised cell resistance from 12.5 to 50.4 M omega. At corresponding Ba2+ concentrations, the resistance of cells in situ was somewhat lower than was the resistance of dissociated cells, a phenomenon that may be due to the small degree of electrical coupling present between Müller cells in situ. There was a similar positive correlation between the magnitude of Ba2+-induced depolarization and input resistance in both dissociated cells and in situ cells. The magnitude of depolarizations generated by localized K+ ejections onto Müller cells was reduced substantially by Ba2+. These observations indicate that Ba2+ is an effective K+ channel blocker in Müller cells in situ as well as in enzymatically dissociated cells.
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Affiliation(s)
- E A Newman
- Eye Research Institute, Boston, MA 02114
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43
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Abstract
Activity-dependent variations in extracellular potassium concentration in the central nervous system may be regulated, in part, by potassium spatial buffering currents in glial cells. The role of spatial buffering in the retina was assessed by measuring light-evoked potassium changes in amphibian eyecups. The amplitude of potassium increases in the vitreous humor was reduced to approximately 10 percent by 50 micromolar barium, while potassium increases in the inner plexiform layer were largely unchanged. The decrease in the vitreal potassium response was accurately simulated with a numerical model of potassium current flow through Müller cells, the principal glial cells of the retina. Barium also substantially increased the input resistance of Müller cells and blocked the Müller cell-generated M-wave, indicating that barium blocks the potassium channels of Müller cells. Thus, after a light-evoked potassium increase within the retina, there is a substantial transfer of potassium from the retina to the vitreous humor by potassium current flow through Müller cells.
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Affiliation(s)
- C J Karwoski
- Department of Psychology, University of Georgia, Athens 30602
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44
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Abstract
The distribution of potassium conductance across the surface of retinal glial (Müller) cells was determined in three species of fishes: two teleosts, the goldfish (Carassius auratus) and the alewife (Alosa pseudoharengus), and an elasmobranch, the spiny dogfish (Squalus acanthias). Potassium conductance was measured by monitoring cell depolarizations evoked by focal ejections of a 15 mEq/L K+ solution onto the surface of freshly dissociated cells. The K+ conductance distributions observed in these three species resembled those found previously in other animals with avascular retinas. In both alewife and dogfish, K+ conductance was highest in the endfoot; K+ conductance in the distal half of these cells ranged from 7.0 to 22.9% of the endfoot conductance. In goldfish, in contrast, K+ conductance was highest in the proximal region of the proximal process (114% of the endfoot conductance). As in the two other species, however, K+ conductance in goldfish was low in the distal half of the cell (7.6 to 40.1% of endfoot conductance). Mean input resistance values of isolated cells were as follows: goldfish, 12.5 M omega; alewife, 26.4 M omega; dogfish, 38.0 M omega. The high resistance of dogfish Müller cells lacking their endfeet (749 M omega) indicates that 95% of the cell membrane conductance is located in or near the endfoot in this species.
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Affiliation(s)
- E A Newman
- Mount Desert Island Biological Laboratory, Salsbury Cove, Maine 04672
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45
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Abstract
The e-wave and a delayed-OFF increase in extracellular K+ concentration are both maximum in the distal half of the inner plexiform layer. These responses also have similar latency, time-course, intensity-dependence, surround properties, and sensitivity to tetrodotoxin. Current source-density analysis of the e-wave reveals a current sink through the proximal retina, a source at the retinal surface, and, in some cases, a weaker source in the mid-retina. These results suggest a model for e-wave generation: delayed-OFF activity in proximal neurons releases K+, which enters Muller cells in the inner plexiform layer; a current exists Muller cells primarily via their endfeet, and the return flow through extracellular space produces the e-wave.
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Affiliation(s)
- C J Karwoski
- Department of Psychology, University of Georgia, Athens 30602
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46
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Abstract
A one-dimensional numerical model of potassium dynamics in the central nervous system is developed. The model incorporates the following physiological processes in computing spatial and temporal changes in extracellular K+ concentration, [K+]o: 1) the release of K+ from K+ sources into extracellular space, 2) diffusion of K+ through extracellular space, 3) active uptake of K+ into cells and blood vessels, 4) passive uptake of K+ into a cellular distribution space, and 5) the transfer of K+ by K+ spatial buffer current flow in glial cells. The following tissue parameters can be specified along the single spatial dimension of the model: 1) the volume fraction and tortuosity of extracellular and glial cell spaces, 2) the volume fraction of the cellular distribution space, 3) rate constants of active uptake and passive uptake processes, and 4) glial cell membrane conductance. The model computes variations in [K+]o and current flow through glial cells for three tissue geometries: 1) planar geometry (the retina and the surface of the brain), 2) cylindrical geometry (tissue surrounding a blood vessel), and 3) spherical geometry (tissue surrounding a point source of K+). For simple sources of K+, the performance of the model matches that predicted from analytical equations. Simulations of previous ion dynamics experiments indicate that the model can accurately predict ion diffusion and K+ current flow in the brain. Simulations of electroretinogram generation and K+ siphoning onto blood vessels suggest that unanticipated K+ dynamics mechanisms may be operating in the central nervous system.
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Affiliation(s)
- L L Odette
- Applied Expert Systems, Inc., Cambridge, Massachusetts 02142
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47
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Abstract
Local increases in neuronal activity within the brain lead to dilation of blood vessels and to increased regional cerebral blood flow. Increases in extracellular potassium concentration are known to dilate cerebral arterioles. Recent studies have suggested that the potassium released by active neurons is transported through astrocytic glial cells and released from their endfeet onto blood vessels. The results of computer simulations of potassium dynamics in the brain indicate that the release of potassium from astrocyte endfeet raises perivascular potassium concentration much more rapidly and to higher levels than does diffusion of potassium through extracellular space, particularly when the site of a potassium increase is some distance from the vessel wall. On the basis of this finding, it is proposed that the release of potassium from astrocyte endfeet plays an important role in regulating regional cerebral blood flow in response to changes in neuronal activity.
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48
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Newman EA. Distribution of potassium conductance in mammalian Müller (glial) cells: a comparative study. J Neurosci 1987; 7:2423-32. [PMID: 2441009 PMCID: PMC6568979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
The distribution of K+ conductance across the surface of retinal Müller cells was determined in 5 mammalian species--rabbit, guinea pig, mouse, owl monkey, and cat--and in tiger salamander. Potassium conductance was measured by monitoring cell depolarizations evoked by focal ejections of a high-K+ solution onto the surface of freshly dissociated cells. This technique measured the total K+ conductance of a given cell region (regional conductance), i.e., the specific K+ conductance times the total surface area in that region. In mammalian species with avascular retinas (rabbit, guinea pig), the regional K+ conductance within the middle portion of the cell was only a fraction (10.6-28.9%) of the endfoot conductance, while the conductance of the distal (photo-receptor) end of the cell was approximately half (41.2-49.8%) the endfoot conductance. In 2 species with vascularized retinas (mouse and owl monkey), by contrast, the regional K+ conductance within the middle portion of the cell was as large as 125.5-129.8% of the endfoot conductance. In these cells the K+ conductance of the distal end was 68.3-82.9% of the endfoot value. In cat, a third vascularized species, the K+ conductance was highest (187.1% of the endfoot value) at the distal end of the cell. In tiger salamander, which has an avascular retina, the regional K+ conductance of all regions distal to the endfoot was only 2.4-15.7% of the endfoot value. Differences in the distributions of regional K+ conductance observed in the 6 species raise the possibility that in vascularized mammalian retinas, the high-K+ conductance of the middle portion of Müller cells is associated with retinal blood vessels. The results are consistent with the hypothesis that, in avascular species, Müller cells aid in regulating extracellular K+ levels by transferring (siphoning) excess K+ principally into the vitreous humor, while in at least some vascularized species (mouse, monkey), excess K+ is transferred by Müller cells into retinal capillaries, as well as into the vitreous.
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Newman EA. The risk of contracting malaria. S Afr Med J 1987; 72:157. [PMID: 3616797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
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50
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Abstract
The membrane properties of Müller cells, the principal glial cells of the vertebrate retina, have been characterized in a series of physiological experiments on freshly dissociated cells. In species lacking a retinal circulation (tiger salamander, rabbit, guinea pig), the end-foot of the Müller cell has a much higher K+ conductance than do other cell regions. In species with retinal circulation (mouse, cat, owl monkey) the K+ conductance of the end-foot is greater than the conductance of the proximal process of the cell. In these species, however, the K+ conductance of the soma and distal process is equal to, or greater than, the end-foot conductance. Müller cells also possess four voltage-dependent ion channels, including an inward rectifying K+ channel. These membrane specializations may aid in the regulation of extracellular K+ levels by Müller cells in the retina. High end-foot conductance shunts excess K+ out through the end-foot, where it diffuses into the vitreous humor. In vascularized retinae, excess K+ may also be transferred to the ablumenal wall of capillaries, where it could be transported into the blood.
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