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Zhu X, Si J, He X, Jia B, Zhou D, Wang C, Qin J, Liu Z. Effects of long-term afforestation on soil water and carbon in the Alxa Plateau. Front Plant Sci 2024; 14:1273108. [PMID: 38273949 PMCID: PMC10808672 DOI: 10.3389/fpls.2023.1273108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 12/20/2023] [Indexed: 01/27/2024]
Abstract
Plantations in dry and semi-arid areas significantly affect the soil's ability to store carbon and maintain a stable water balance. It is yet unclear, though, how planted trees in these regions might impact the soil's carbon and water levels. As a forest ages, it is unknown how soil water and soil carbon interact with one another. In order to conduct this study, four Saxaul plantations in the Alxa Plateau were chosen, with the neighboring mobile sandy (MS) ground serving as a control. The ages of the plantations ranged from 5 to 46 years. The major topics of the study included the relationship between soil water and soil carbon, changes in the 0-300 cm soil layer's soil water content (SWC), soil organic carbon (SOC), and soil inorganic carbon (SIC) following afforestation. The findings demonstrated that, in comparison to MS, afforestation considerably increased SOC and SIC stocks. In comparison to MS, the SIC grew by 4.02 kg m-2, 4.12 kg m-2, 5.12 kg m-2, and 6.52 kg m-2 throughout periods of 5 years, 11 years, 22 years, and 46 years, respectively. SOC increased relative to MS by 2.55 kg m-2, 2.91 kg m-2, 3.53 kg m-2, and 4.05 kg m-2. Afforestation, however, also contributed to a considerable decline in deep SWC and an increase in the soil water deficit (SWD). In comparison to MS, the mean SWC values were lower at 5 years, 11 years, 22 years, and 46 years, respectively, by 0.48%, 1.37%, 1.56%, and 4.00%. The increase in soil carbon pool caused by sand afforestation actually came at the expense of a reduction in soil water due to a large negative association between deep SWC, SOC, and SIC. To limit SWC losses and encourage sustainable forest land development, we advocate suitable harvest management practices on forest land.
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Affiliation(s)
- Xinglin Zhu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jianhua Si
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Xiaohui He
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
- Faculty of Resources and Environment, Baotou Teachers’ College, Inner Mongolia University of Science and Technology, Baotou, China
| | - Bing Jia
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Dongmeng Zhou
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunlin Wang
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jie Qin
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Zijin Liu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
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Ndayambaza B, Si J, Deng Y, Jia B, He X, Zhou D, Wang C, Zhu X, Liu Z, Qin J, Wang B, Bai X. The Euphrates Poplar Responses to Abiotic Stress and Its Unique Traits in Dry Regions of China (Xinjiang and Inner Mongolia): What Should We Know? Genes (Basel) 2023; 14:2213. [PMID: 38137039 PMCID: PMC10743205 DOI: 10.3390/genes14122213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 11/27/2023] [Accepted: 12/13/2023] [Indexed: 12/24/2023] Open
Abstract
At the moment, drought, salinity, and low-temperature stress are ubiquitous environmental issues. In arid regions including Xinjiang and Inner Mongolia and other areas worldwide, the area of tree plantations appears to be rising, triggering tree growth. Water is a vital resource in the agricultural systems of countries impacted by aridity and salinity. Worldwide efforts to reduce quantitative yield losses on Populus euphratica by adapting tree plant production to unfavorable environmental conditions have been made in response to the responsiveness of the increasing control of water stress. Although there has been much advancement in identifying the genes that resist abiotic stresses, little is known about how plants such as P. euphratica deal with numerous abiotic stresses. P. euphratica is a varied riparian plant that can tolerate drought, salinity, low temperatures, and climate change, and has a variety of water stress adaptability abilities. To conduct this review, we gathered all available information throughout the Web of Science, the Chinese National Knowledge Infrastructure, and the National Center for Biotechnology Information on the impact of abiotic stress on the molecular mechanism and evolution of gene families at the transcription level. The data demonstrated that P. euphratica might gradually adapt its stomatal aperture, photosynthesis, antioxidant activities, xylem architecture, and hydraulic conductivity to endure extreme drought and salt stress. Our analyses will give readers an understanding of how to manage a gene family in desert trees and the influence of abiotic stresses on the productivity of tree plants. They will also give readers the knowledge necessary to improve biotechnology-based tree plant stress tolerance for sustaining yield and quality trees in China's arid regions.
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Affiliation(s)
- Boniface Ndayambaza
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianhua Si
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
| | - Yanfang Deng
- Qilian Mountain National Park Qinghai Provincial Administration, Xining 810000, China;
| | - Bing Jia
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaohui He
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
- Faculty of Resources and Environment, Baotou Teachers’ College, Inner Mongolia University of Science and Technology, Baotou 014030, China
| | - Dongmeng Zhou
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chunlin Wang
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xinglin Zhu
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zijin Liu
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jie Qin
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Boyang Wang
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xue Bai
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (B.N.); (B.J.); (X.H.); (D.Z.); (C.W.); (X.Z.); (Z.L.); (J.Q.); (B.W.); (X.B.)
- University of Chinese Academy of Sciences, Beijing 100049, China
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Wang H, Li T, Xie M, Si J, Qin J, Yang Y, Zhang L, Ding H, Chen X, He L. Association of Computed Tomography Radiomics Signature with Progression-free Survival in Neuroblastoma Patients. Clin Oncol (R Coll Radiol) 2023; 35:e639-e647. [PMID: 37349199 DOI: 10.1016/j.clon.2023.06.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 05/22/2023] [Accepted: 06/12/2023] [Indexed: 06/24/2023]
Abstract
AIMS To investigate the association of computed tomography radiomics signature with progression-free survival (PFS) in neuroblastoma patients. MATERIALS AND METHODS We retrospectively included 167 neuroblastoma patients who were divided into a training set and a test set through stratified sampling at a ratio of 7:3. Regions of interest of the primary tumours were delineated on pretreatment contrast-enhanced computed tomography images and radiomics features were extracted from them. The intraclass correlation coefficient, Pearson correlation coefficient, and least absolute shrinkage and selection operator Cox regression algorithm were applied to select radiomics features and construct the radiomics signature. The effectiveness of the signature in predicting PFS was evaluated using the concordance index (C-index) and 95% confidence interval in both the training and the test sets. The time-dependent receiver operator characteristic curve of the radiomics signature was plotted and the area under the curve (AUC) was calculated. A calibration curve was used to assess the difference between the predicted probability of the radiomics signature and the observed probability at different time points. RESULTS The radiomics signature was composed of six features, which achieved a C-index of 0.733 (95% confidence interval 0.664-0.803) in the training set and 0.734 (95% confidence interval 0.608-0.861) in the test set. In the training set, the radiomics signature yielded an AUC of 0.707, 0.737, 0.788, 0.859 and 0.829 for 1-, 2-, 3-, 4- and 5-year PFS, respectively. Similarly, the radiomics signature exhibited an AUC of 0.738, 0.807, 0.761, 0.787 and 0.818 for 1-, 2-, 3-, 4- and 5-year PFS, respectively, in the test set. The calibration curves showed no significant difference between the predicted probability of the radiomics signature and the observed probability for up to 5 years. CONCLUSIONS Computed tomography radiomics features exhibit a significant correlation with the PFS of neuroblastoma patients, particularly in terms of long-term outcomes.
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Affiliation(s)
- H Wang
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China.
| | - T Li
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - M Xie
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - J Si
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - J Qin
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - Y Yang
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - L Zhang
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - H Ding
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China
| | - X Chen
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China.
| | - L He
- Department of Radiology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Child Health and Disorders, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatrics, Yuzhong District, Chongqing, China.
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Qin J, Si J, Jia B, Zhao C, Zhou D, He X, Wang C, Zhu X. Water use strategies of Nitraria tangutorum in the lake-basin region of the Badain Jaran Desert. Front Plant Sci 2023; 14:1240656. [PMID: 37649998 PMCID: PMC10465167 DOI: 10.3389/fpls.2023.1240656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 07/24/2023] [Indexed: 09/01/2023]
Abstract
Information regarding plant water-use strategies is essential for understanding the hydrological processes and plant survival adaptation mechanisms in desert lake basin regions. To examine the water use strategies of plants in desert lake basin areas, water uptake patterns, water use efficiency, and water potential of Nitraria tangutorum were investigated at different distances from the lake duringhe growing seasons in the lake basin regions of the Badain Jaran Desert. The results indicate that N. tangutorum primarily absorbed groundwater in May (63.8%) and August (53.5%), relied on deep soil water in June (75.1%), and uniformly absorbed soil water from different layers in July. These observations could be explained by periodic fluctuations in the groundwater level and the consequent decrease in soil water availability, as well as plant root adjustments. As soil water availability decreases, N. tangutorum adapts to water variation by increasing its water use efficiency (WUE) and reducing its leaf water potential (Ψ). With intensified water stress, N. tangutorum gradually shifted from adventurous anisohydric regulation to conservative isohydric regulation. Thus, N. tangutorum responds to diverse degrees of environmental changes by altering its water-use strategy. A better understanding of the adaptive water use strategies developed by desert plants under varying water availability conditions provides insight into the diversity of species' reactions to long-term drought and quantifies the hydrological cycle of desert ecosystems against the background of worldwide climate warming.
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Affiliation(s)
- Jie Qin
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jianhua Si
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Bing Jia
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunyan Zhao
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Dongmeng Zhou
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaohui He
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunlin Wang
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xinglin Zhu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
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Hao Y, Si J, Wei J, Gu X, Wang W, Zhang Y, Guan Y, Huang H, Xu C, Song Z. 221P Comparison of efficacy and safety of carboplatin combined with nab-paclitaxel or paclitaxel as first-line therapy for advanced thymic epithelial tumors. J Thorac Oncol 2023. [DOI: 10.1016/s1556-0864(23)00474-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Hao Y, Si J, Jin J, Wei J, Xiang J, Xu C, Song Z. 220P Comparison of efficacy and safety of platinum-based chemotherapy as first-line therapy between B3 thymoma and thymic carcinoma. J Thorac Oncol 2023. [DOI: 10.1016/s1556-0864(23)00473-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023]
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Zhou D, Si J, He X, Jia B, Zhao C, Wang C, Qin J, Zhu X, Liu Z. Response of soil water content temporal stability to stand age of Haloxylon ammodendron plantation in Alxa Desert, China. Front Plant Sci 2023; 14:1099217. [PMID: 36760638 PMCID: PMC9904541 DOI: 10.3389/fpls.2023.1099217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 01/10/2023] [Indexed: 06/18/2023]
Abstract
Afforestation as an effective measure for wind and sand control has achieved remarkable results in northern China, and has also greatly changed the land use and vegetation characteristics of the region. It is important to study the spatial and temporal dynamics of soil water content (SWC) in different afforestation years and its temporal stability to understand the dynamic characteristics of SWC during afforestation. In order to reveal the spatiotemporal dynamic characteristics of SWC in desert area Haloxylon ammodendron (HA)plantations, in this study, five restorative-aged HA plantations in desert areas were selected and their SWC was measured in stratified layers for the 0-400 cm soil profile; we also analyzed the spatiotemporal dynamics and temporal stability of the SWC. The results showed that the SWC of HA plantations decreased with the increase in planting age in the measurement period, and the SWC of deep layers increased by more than that of shallow layers with planting age. Spearman's rank correlation coefficients for SWC of 0-400 cm in both 5- and 11-year-old HA plantations reached above 0.8 and were highly significantly correlated; the temporal stability of SWC tends to increase as the depth of the soil layer deepens. In contrast, the temporal stability of SWC in deeper layers (200-400 cm) of 22-, 34- and 46-year-old stands showed a decreasing trend with depth. Based on the relative difference analysis, representative sampling points can be selected to monitor the regional average SWC, but for older HA plantations, the uncertainty factor of stand age should be considered in the regional moisture simulation. This study verified that it is feasible to simulate large-scale SWC in fewer observations for HA plantations younger than 11 years old, while large errors exist for older stands, especially for deeper soils. This will help soil moisture management in HA plantations in arid desert areas.
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Affiliation(s)
- Dongmeng Zhou
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jianhua Si
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Xiaohui He
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
- Faculty of Resources and Environment, Baotou Teachers’ College, Inner Mongolia University of Science and Technology, Baotou, China
| | - Bing Jia
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Chunyan Zhao
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Chunlin Wang
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jie Qin
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xinglin Zhu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Zijin Liu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
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Qin J, Si J, Jia B, Zhao C, Zhou D, He X, Wang C, Zhu X. Water use strategies of Ferula bungeana on mega-dunes in the Badain Jaran Desert. Front Plant Sci 2022; 13:957421. [PMID: 36561438 PMCID: PMC9763701 DOI: 10.3389/fpls.2022.957421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
In desert ecosystems, ephemeral plants have developed specialized water use strategies in response to long-term natural water stress. To examine the water use strategies of desert ephemeral plants under natural extreme drought conditions, we investigated the water absorption sources, water potential, hydraulic conductivity, and water use efficiency of Ferula bungeana at different elevations on the slopes of mega-dunes in the Badain Jaran Desert, Inner Mongolia, during a period of extreme drought. We found that the water utilized by F. bungeana was mostly absorbed from the 0-60 cm soil layers (80.47 ± 4.28%). With progression of the growing season, the source of water changed from the 0-30 cm soil layer to the 30-60 cm layer. The water potentials of the leaves, stems, and roots of F. bungeana were found to be characterized by clear diurnal and monthly variation, which were restricted by water availability and the hydraulic conductivity of different parts of the plant. The root hydraulic conductivity of F. bungeana was found to be considerably greater than that of the canopy, both of which showed significant diurnal and monthly variation. The water use efficiency of F. bungeana under extreme drought conditions was relatively high, particularly during the early and late stages of the growing season. Variations in water availability led to the regulation of water uptake and an adjustment of internal water conduction, which modified plant water use efficiency. These observations tend to indicate that the water use strategies of F. bungeana are mainly associated with the growth stage of plants, whereas the distribution pattern of plants on mega-dunes appeared to have comparatively little influence. Our findings on the water use of ephemeral plants highlight the adaptive mechanisms of these plants in desert habitats and provide a theoretical basis for selecting plants suitable for the restoration and reconstruction of desert ecosystems.
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Affiliation(s)
- Jie Qin
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jianhua Si
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Bing Jia
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunyan Zhao
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Dongmeng Zhou
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaohui He
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunlin Wang
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xinglin Zhu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
- University of Chinese Academy of Sciences, Beijing, China
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Zhai J, Li Z, Si J, Zhang S, Han X, Chen X. Structural and Functional Responses of the Heteromorphic Leaves of Different Tree Heights on Populus euphratica Oliv. to Different Soil Moisture Conditions. Plants 2022; 11:plants11182376. [PMID: 36145777 PMCID: PMC9505870 DOI: 10.3390/plants11182376] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 09/05/2022] [Indexed: 11/16/2022]
Abstract
Populus euphratica Oliv., a pioneer species of desert riparian forest, is characterized heterophylly. To understand the adaptation strategies of the heteromorphic leaves of P. euphratica to soil drought, we assessed the structural and functional characteristics of the heteromorphic leaves at different heights in suitable soil moisture conditions (groundwater depth 1.5 m) and drought conditions (groundwater depth 5 m), which include morphology, anatomical structure, photosynthetic capacity, water use efficiency, osmotic adjustment capacity, and endogenous hormones. These results indicate that leaf area, leaf thickness, fence tissue, palisade-to-sea ratio, main vein xylem area, vessel area, net photosynthetic rate, transpiration rate, and proline, MDA, IAA, GA3, and ZR contents showed a positive correlation with the tree height under the two soil moisture conditions, but leaf shape index, leaf water potential (LWP), and ABA content showed a decreasing trend. In addition, the main vein vascular bundle area, main vein xylem area, and contents of malondialdehyde, ABA, GA3, and IAA were significantly greater under soil drought conditions than normal soil water content. Under soil drought stress, the heteromorphic leaves of P. euphratica showed more investment in anatomical structure and greater water use efficiency, proline, and hormone contents, and synergistic changes to maintain high photosynthetic efficiency. This is an adaptation strategy to water stress caused by soil drought and tree height changes.
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Affiliation(s)
- Juntuan Zhai
- College of Life Sciences, Tarim University and Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Xinjiang Production & Construction Corps and Research Center of Populus Euphratica, Alar 843300, China
| | - Zhijun Li
- College of Life Sciences, Tarim University and Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Xinjiang Production & Construction Corps and Research Center of Populus Euphratica, Alar 843300, China
- Correspondence:
| | - Jianhua Si
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Shanhe Zhang
- College of Life Sciences, Tarim University and Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Xinjiang Production & Construction Corps and Research Center of Populus Euphratica, Alar 843300, China
| | - Xiaoli Han
- College of Life Sciences, Tarim University and Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Xinjiang Production & Construction Corps and Research Center of Populus Euphratica, Alar 843300, China
| | - Xiangxiang Chen
- College of Life Sciences, Tarim University and Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Xinjiang Production & Construction Corps and Research Center of Populus Euphratica, Alar 843300, China
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Guo X, Feng Q, Yin Z, Si J, Xi H, Zhao Y. Critical role of groundwater discharge in sustaining streamflow in a glaciated alpine watershed, northeastern Tibetan Plateau. Sci Total Environ 2022; 822:153578. [PMID: 35104510 DOI: 10.1016/j.scitotenv.2022.153578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 01/24/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
As the hydrologic buffering capacity of glaciers diminishes on climate warming, groundwater stored in the glaciated alpine watersheds becomes an important source of streamflow, quantifying the groundwater contribution to this streamflow is significant for better predictions of the impact of rapidly disappearing glaciers on regional water resources. However, the role of groundwater in sustaining streams remains unclear. Here, we selected the upper Shule River Basin (USRB) on the northeast Tibetan Plateau (NETP) as a case to address this knowledge gap through a comprehensive study of geochemistry and stable isotopes data, the application of an end member mixing model and the baseflow hydrograph separation program (HYSEP). Our results indicate that even though the potential sources of streamflow exhibited distinct monthly differences during December 2012-December 2013, the groundwater was the dominant contributor to streamflow generation in the USRB. The groundwater contributed 45% to 100% of the monthly mean streamflow, and the annual mean value of 70%. By contrast, the glacier-snow meltwater and precipitation only contributed 12% and 18% of the annual discharge. The volume contributed by groundwater was calculated as 9.93 × 108 m3, approximately six times higher than the input of the glacier-snow meltwater (i.e., 1.63 × 108 m3). From 1954 to 2018, the volume of the groundwater discharge to the streamflow in the USRB continuously increased from 4.83 × 108 m3/a (65% of total streamflow) in the 1950s to 10.34 × 108 m3/a (71% of total streamflow) in the 2010s, an increase of 2.14 times. The retreating glacier, as well as increasing precipitation and temperature, were determined to be the main reasons for the increase in groundwater discharge to the streamflow. Our findings suggest that groundwater contribution is more important than was previously thought in the glaciated alpine watersheds on the NETP.
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Affiliation(s)
- Xiaoyan Guo
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China; Alax Desert Eco-hydrology Experimental Research Station, Lanzhou, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, China.
| | - Qi Feng
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China; Alax Desert Eco-hydrology Experimental Research Station, Lanzhou, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, China
| | - Zhenliang Yin
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China; Alax Desert Eco-hydrology Experimental Research Station, Lanzhou, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, China
| | - Jianhua Si
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China; Alax Desert Eco-hydrology Experimental Research Station, Lanzhou, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, China
| | - Haiyang Xi
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China; Alax Desert Eco-hydrology Experimental Research Station, Lanzhou, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, China
| | - Yan Zhao
- Yellow River Engineering Consulting Co., Ltd., Zhengzhou, China
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Wang D, Abula B, Jizuo A, Si J, Zhong K, Zhou Y. Agricultural Openness and the Risk of COVID-19 Incidence: Evidence from China. Int J Environ Res Public Health 2022; 19:ijerph19063517. [PMID: 35329202 PMCID: PMC8954341 DOI: 10.3390/ijerph19063517] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 03/11/2022] [Accepted: 03/15/2022] [Indexed: 12/04/2022]
Abstract
At present, there are large number of articles on the impact of COVID-19, but there are only a few articles on the impact of COVID-19 and international agriculture. Agriculture product is different from other industrial products. If domestic food cannot be self-sufficient, it must be resolved through imports. This will inevitably face the dilemma between the opening up agriculture and the risk of importing COVID-19. This paper pioneered the use of entropy method, TOPSIS method and grey correlation analysis to predict the correlation between agricultural opening to the outside world and the input and spread of COVID-19. We use the correlation matrix quantifying the number of confirmed COVID-19 cases and agricultural openness to deduce that there is a significant positive correlation between the flow of agricultural products caused by China’s agricultural opening-up and the spread of COVID-19, and use the proposed matrix to predict the spread risk of COVID-19 in China. The results of the empirical analysis can provide strong evidence for decision-makers to balance the risk of COVID-19 transmission with the opening of agricultural markets, and they can take this evidence into full consideration to formulate reasonable policies. This has great implications both for preventing the spread of COVID-19 and for agricultural opening-up.
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Affiliation(s)
- Dezhen Wang
- College of Economics and Management, Xinjiang Agricultural University, Urumqi 830052, China;
- Business School, Yulin Normal University, Yulin 537000, China
| | - Buwajian Abula
- College of Economics and Management, Xinjiang Agricultural University, Urumqi 830052, China;
- Correspondence: (B.A.); (Y.Z.)
| | - Aniu Jizuo
- School of Public Policy & Management, Tsinghua University, Beijing 100084, China;
| | - Jianhua Si
- School of International Studies, Renmin University, Beijing 100872, China;
| | - Kaiyang Zhong
- School of Economic Information Engineering, Southwestern University of Finance and Economics, Chengdu 611130, China;
| | - Yujiao Zhou
- School of Economics, Southwestern University of Finance and Economics, Chengdu 611130, China
- Correspondence: (B.A.); (Y.Z.)
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Zhou D, Si J, He X, Jia B, Zhao C, Wang C, Qin J, Zhu X. The Process of Soil Desiccation under Haloxylon ammodendron Plantations: A Case Study of the Alxa Legue Desert, China. Plants (Basel) 2022; 11:235. [PMID: 35161216 PMCID: PMC8840604 DOI: 10.3390/plants11030235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 01/11/2022] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Haloxylon ammodendron is a desert shrub widely used as a windbreak and for sand fixation, and it has achieved remarkable results in China. However, in desert areas, large-scale afforestation increases soil water consumption and forms a dried soil layer (DSL), the development of which seriously threatens the sustainable development of the ecosystem. In this study, soil moisture in the 0-400 cm soil profile was measured in selected 5-, 11-, 22-, 34-, and 46-year-old plantations of Haloxylon ammodendron plantations in Alxa Legue, China, and three soil desiccation evaluation indices were calculated-the soil desiccation index (SDI), DSL thickness (DSLT), and DSL soil water content (DSL-SWC)-to analyze the change pattern of the soil water content for different stand ages. The results showed that the shallow water layer (0-200 cm) was depleted sharply in the first five years of Haloxylon ammodendron plantation growth, but no DSL developed; the inflection point of soil water content change appeared after 10 years of growth, after which the shallow soil water was depleted and the drying process of the deep soil water content was significantly faster than that in the early growth period. The deep soil layer (200-400 cm) was depleted seriously after 22 years of afforestation, the soil drying phenomenon was obvious, and the DSL developed from the 172 cm soil layer. After 46 years of afforestation, the DSL was fully developed and the DSL-SWC was only 0.034 cm3 cm-3. Priority should thus be given to the use of less water-consuming shrub species; alternatively, after 5 years of growth of Haloxylon ammodendron plantations, certain water control measures should be taken to maintain the soil water balance.
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Affiliation(s)
- Dongmeng Zhou
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
- Northwest Institute of Eco-Environment and Resources, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianhua Si
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
| | - Xiaohui He
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
- Northwest Institute of Eco-Environment and Resources, University of Chinese Academy of Sciences, Beijing 100049, China
- Faculty of Resources and Environment, Baotou Teachers’ College, Inner Mongolia University of Science and Technology, Baotou 014030, China
| | - Bing Jia
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
| | - Chunyan Zhao
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
| | - Chunlin Wang
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
- Northwest Institute of Eco-Environment and Resources, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jie Qin
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
- Northwest Institute of Eco-Environment and Resources, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xinglin Zhu
- Key Laboratory of Eco-Hydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; (D.Z.); (X.H.); (B.J.); (C.Z.); (C.W.); (J.Q.); (X.Z.)
- Northwest Institute of Eco-Environment and Resources, University of Chinese Academy of Sciences, Beijing 100049, China
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Yang Y, Si J, Lv X, Dai D, Liu L, Tang S, Wang Y, Zhang S, Xiao W, Zhang Y. Integrated analysis of whole genome and transcriptome sequencing reveals a frameshift mutation associated with recessive embryonic lethality in Holstein cattle. Anim Genet 2021; 53:137-141. [PMID: 34873723 DOI: 10.1111/age.13160] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 11/20/2021] [Accepted: 11/25/2021] [Indexed: 12/14/2022]
Abstract
Embryo loss is an important factor affecting fertility in dairy production. HH2 was identified as a haplotype on chromosome 1 associated with embryonic lethality in Holstein cattle. In the current study, both short- and long-read WGS was performed on four carriers and four non-carriers of HH2 to screen for variants in concordance with HH2 haplotype status. Sequence variation analysis revealed five putative functional variants of protein-coding genes, including a frameshift mutation (g.107172616delT) in intraflagellar transport protein 80 (IFT80) gene. Transcriptome analysis of whole blood indicated that no gene exhibited significantly differential expression or allele-specific expression between carriers and non-carriers in the candidate region. This evidence points to g.107172616delT as the highest priority causative mutation for HH2. Protein prediction reveals that the frameshift mutation results in a premature stop codon to reduce the peptide chain from 760 to 383 amino acids and greatly alters the structure and function of IFT80 protein. Our results demonstrate that the use of a combination of multiple high-throughput sequencing technologies is an efficient strategy to screen for the candidate causative mutations responsible for Mendelian traits, including genetic disorders.
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Affiliation(s)
- Y Yang
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
| | - J Si
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
| | - X Lv
- Beijing Dairy Cattle Center, Beijing, 100192, China
| | - D Dai
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
| | - L Liu
- Beijing Dairy Cattle Center, Beijing, 100192, China
| | - S Tang
- Beijing Animal Husbandry Station, Beijing, 100107, China
| | - Y Wang
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
| | - S Zhang
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
| | - W Xiao
- Beijing Animal Husbandry Station, Beijing, 100107, China
| | - Y Zhang
- National Engineering Laboratory for Animal Breeding, Key Laboratory of Animal Genetics, Breeding and Reproduction of Ministry of Agriculture and Rural Affairs, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China
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Yu T, Feng Q, Si J, Xi H, Su Y, Mitchell PJ, Pinkard EA. Flooding constrains tree water use of a riparian forest in the lower Heihe River Basin, Northwest China. Sci Total Environ 2021; 760:144069. [PMID: 33348155 DOI: 10.1016/j.scitotenv.2020.144069] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 11/21/2020] [Accepted: 11/22/2020] [Indexed: 06/12/2023]
Abstract
Riparian forests in floodplains are occasionally or regularly submerged by flooding. However, controversy exists regarding the effects of flooding on water use in riparian forests, and this controversy severely restricts our ability to better utilize limited water resources to restore damaged riparian forests in arid regions.The evapotranspiration (Et) and transpiration (T) of riparian P. euphratica forests in the arid regions of northwestern China were determined using eddy covariance and sap flow technology across a 3-year period. Fortunately, the flooding introduced by ecological water diversion was occurred in 2014 and 2016 but not in 2015. Our results showed that the magnitude and seasonal pattern of Et across 3 years was comparable (approximately 900 mm), but the T was higher in 2015 (431 mm) than in the other two years (288 mm in 2014 and 290 mm in 2016). The interannual patterns in the transpiration were consistent with the net ecosystem productivity at the site. Given the similar meteorological conditions (e.g. net radiation, temperature, relative humidity, and vapor pressure deficit) among the 3 years, two aspects may contributed to the suppressed tree water use and productivity under flooding: 1) the increased soil salinity reduce the roots water uptake from soil by increasing root water potential via osmotic adjustment; and 2) the depressed tree growth (e.g. the leaf area) via suspended water upward transport along soil-plant-atmosphere continuum. Although flooding is widely known beneficial for the regeneration, we suggest that it is not appropriate for the rejuvenation of phreatophyte (e.g., Populus spp.) in arid regions. Our results were drawn from only three years of measurement and therefore longer time series are needed to confirm or refine those conclusions.
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Affiliation(s)
- Tengfei Yu
- Alax Desert Eco-hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China.
| | - Qi Feng
- Alax Desert Eco-hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Jianhua Si
- Alax Desert Eco-hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Haiyang Xi
- Alax Desert Eco-hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Yonghong Su
- Alax Desert Eco-hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China
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Tian Q, Si J, Jiang F, Xu R, Wei B, Huang B, Li Q, Jiang Z, Zhao T. Caspofungin combined with TMP/SMZ as a first-line therapy for moderate-to-severe PCP in patients with human immunodeficiency virus infection. HIV Med 2020; 22:307-313. [PMID: 33277811 PMCID: PMC7984216 DOI: 10.1111/hiv.13013] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2020] [Indexed: 01/05/2023]
Abstract
OBJECTIVES The effectiveness of trimethoprim/sulfamethoxazole (TMP/SMZ) for pneumocystis pneumonia (PCP) is limited with adverse events. Caspofungin, by inhibiting the cyst form of Pneumocystis jirovecii, may be an alternative therapy for PCP. However, the availability of clinical data about caspofungin combined with TMP/SMZ in the treatment of PCP in HIV-infected patients is limited. Thus, we aimed to examine the clinical effectiveness and safety of caspofungin combined with TMP/SMZ as a first-line therapy for moderate-to-severe PCP in HIV-infected patients. METHODS From January 2017 to December 2019, data of HIV-infected patients with moderate-to-severe PCP who received either TMP/SMZ alone or caspofungin combined with TMP/SMZ as first-line therapy were retrospectively reviewed to assess the effectiveness and safety of each regimen. The Kaplan-Meier curve and log-rank test were used for survival analysis. RESULTS A total of 278 patients met the criteria. The overall positive response rate of PCP treatment was 48.92%, and the overall all-cause in-hospital mortality rate was 33.09%. Patients who received combination therapy consisting of caspofungin and TMP/SMZ had a better positive response rate (59.44% vs. 37.78%, P < 0.001) and lower all-cause in-hospital mortality rate (24.48% vs. 42.22%, P = 0.003). Also, patients who received combination therapy had higher survival rate during a hospital stay (75.52% vs. 57.78%, P = 0.004), and those who received longer combination therapy were more likely to have higher survival rate (P = 0.042). We found that age (P = 0.019), CD4 cell count (P = 0.001) and therapeutic regimen (P = 0.002) were significant risk factors for all-cause in-hospital mortality rate in univariate analysis. In multivariate analysis, only CD4 cell count and therapeutic regimen were statistically significant factors associated with all-cause in-hospital mortality rate. Patients with a CD4 count of > 30 cells/µL and patients who received combination therapy consisting of caspofungin and TMP/SMZ were more likely to survive from PCP (P = 0.011 and P = 0.002, respectively). There were no additional severe adverse events caused by adding caspofungin. CONCLUSIONS For HIV-infected patients with moderate-to-severe PCP, combination therapy with caspofungin and TMP/SMZ is an effective and promising first-line therapy with no greater number of adverse events compared with TMP/SMZ monotherapy. Patients who received caspofungin had better positive response rates and lower all-cause in-hospital mortality rates. Also, we recommend early initiation of caspofungin.
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Affiliation(s)
- Q Tian
- The Third People's Hospital of Guilin, Guangxi, China
| | - J Si
- The First Hospital of Jiaxing, Zhejiang, China
| | - F Jiang
- The Third People's Hospital of Guilin, Guangxi, China
| | - R Xu
- The Third People's Hospital of Guilin, Guangxi, China
| | - B Wei
- The Third People's Hospital of Guilin, Guangxi, China
| | - B Huang
- The Third People's Hospital of Guilin, Guangxi, China
| | - Q Li
- The Third People's Hospital of Guilin, Guangxi, China
| | - Z Jiang
- People's Hospital of Liuzhou, Guangxi, China
| | - T Zhao
- The Third People's Hospital of Guilin, Guangxi, China
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Si J. 211P Is axillary lymph node dissection necessary in breast cancer patients with mastectomy and false-negative frozen section in sentinel lymph node biopsy? Ann Oncol 2020. [DOI: 10.1016/j.annonc.2020.08.333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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Si J, Quan CL, Mo M, Guo R, Su YH, Yang BL, Chen JJ, Shao ZM, Wu J. [A single-center retrospective study on axillary evaluation in 1 557 breast ductal carcinoma in situ patients between 2006 and 2016]. Zhonghua Wai Ke Za Zhi 2019; 57:681-685. [PMID: 31474060 DOI: 10.3760/cma.j.issn.0529-5915.2019.09.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objectives: To examine the influence factors on axillary evaluation in ductal carcinoma in situ (DCIS) patients, and the prognosis of different choices of axillary evaluation in a single-center retrospective study. Methods: Totally 1 557 DCIS patients admitted in Department of Breast Surgery, Fudan University Shanghai Cancer Center from January 2006 to November 2016 were retrospectively enrolled. All patients were female. The median age was 49 years (range: 21 to 85 years). Surgical methods included modified radical mastectomy, simple mastectomy (with or without axillary evaluation) and breast conservation surgery (with or without axillary evaluation). Axillary evaluation included axillary lymph node dissection (ALND) and sentinel lymph node biopsy (SLNB). T tests, χ(2) test and Logistic regression analysis was used to analyze influence factors on axillary evaluation, respectively. Kaplan-Meier curve and Log-rank analysis were used to evaluate recurrence-free survival (RFS) and loco-regional recurrence-free survival (LRRFS) in patients with different surgical methods. Results: Among the 1 557 DCIS patients, there were 1 226 cases received axillary evaluation, while 331 cases not received axillary evaluation. Patients were separated into 3 groups by different axillary evaluation choices: SLNB group (957 cases, 61.46%), ALND group (197 cases, 12.65%) and no evaluation group (403 cases, 25.88%). The patients in SLNB group increased significantly (P=0.000), from 3.85% (60/1 557) in 2006 to 75.19% (1 170/1 557) in 2016. The independent influence factors of receiving axillary evaluation were high nuclear grade (OR=3.191, 95%CI: 1.722 to 5.912, P=0.001) and tumor size>15 mm (OR=1.698, 95%CI: 1.120 to 2.573, P=0.012). Also, patients received breast conservation surgery were more likely to refuse axillary evaluation (OR=0.155, 95%CI: 0.103 to 0.233, P=0.000). There were no significant differences in RFS and LRRFS in patients with different axillary evaluation choices. Conclusions: The investigation in trends and influence factors of different axillary evaluation choices provided basis on surgical precision medicine in DCIS patients. Patients received SLNB increased significantly. The independent influence factors of axillary evaluation were nuclear grade, tumor size and surgical methods. There was no significant differences in prognosis among the groups receiving different axillary evaluations.
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Affiliation(s)
- J Si
- Department of Breast Surgery, Fudan University Shanghai Cancer Center, Shanghai 200032, China
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Si J, Li H, Lu C, Shen G. Identification and investigation on the foxc1-regulated mrnas and mirnas in osteogenic differentiation of mouse preosteoblastic cells. Int J Oral Maxillofac Surg 2019. [DOI: 10.1016/j.ijom.2019.03.842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Si J, Shen H, Shi J, Shen G. Will inferior alveolar nerve injury during bilateral sagittal split ramus osteotomy impair the bone healing of human mandible? Int J Oral Maxillofac Surg 2019. [DOI: 10.1016/j.ijom.2019.03.210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Guo R, Su YH, Xue JY, Si J, Chi YY, Wu J. Abstract P6-05-01: A novel cleaved cytoplasmic lncRNA LacRNA interacts with PHB2 and suppresses breast cancer metastasis via repressing MYC targets. Cancer Res 2019. [DOI: 10.1158/1538-7445.sabcs18-p6-05-01] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Long noncoding RNAs (lncRNAs) have been implicated in breast cancer metastases through largely unknown mechanisms. In this study, we used microarray analysis to compare lncRNAs expression levels between matched pairs of breast lymph node metastatic tissues and primary tumors. We discovered that lncRNA LINC00478 was substantially downregulated in the metastatic tumor samples. Interestingly, we found that LINC00478 could be cleaved by RNase to simultaneously generates the mature 5' ends of cytoplasmic RNA and 3' ends of nuclear RNA by polyadenylation. We named 5' ends 791-nt RNA as LacRNA (LINC00478-assciated cytoplasmic RNA). Over expression of full-length LINC00478 and LacRNA, but not LINC00478 3' RNA, significantly inhibited breast cancer proliferation, invasion and metastasis in vitro and in vivo.We used CRISPR-dCas9 complex to mediate efficient transcriptional activation of LacRNA at endogenous genomic loci followed by RNA-seq analyses. Gene set enrichment analysis (GSEA) showed that the MYC pathway/targets were prominent gene sets negatively enriched in LacRNA-activated cells. Further study revealed that LacRNA exerted its tumor suppressive activity by directly binding with prohibitin2(PHB2) to enhance its protein stability, which promoted PHB2 competing with MYC for transcriptionally suppressing the MYC target genes (e.g., CDC20, CDC45, CCNA2 and MAD2L1). Mechanistically, LacRNA inhibits breast cancer invasion and metastasis by interacting with PHB2 through LacRNA's 1-300nt region. In addition, taking advantage of CRISPR system to knock-out and activate the expression of LacRNA, as well as rescue experiment, we uncovered the positive correlation between LacRNA and PHB2 and their role in suppressing MYC target genes and cancer metastasis. At the same time, LacRNA can attenuated the MYC induced activation of MYC targets through binding with PHB2, indicating that LacRNA plays a central role in the suppression of MYC target genes. We further explored the role of LacRNA in inhibiting lung metastasis by implanting LacRNA-activated LM2 cells into the mammary fat pads of NOD-SCID mice. Luciferase imaging and histological analysis were used to detect lung metastasis and found that LacRNA significantly suppressed lung metastasis. Immunohistochemistry were used to detect the expression of PHB2 and MYC targets in both orthotopic tumors and lung metastasis and verified their correlation in vivo. Extensive analyses of clinical data indicated that LacRNA level was substantially downregulated in metastases tumors accompanied by enrichment of MYC targets. The robustness value of LacRNA expression was further verified in two independent patient cohorts, including 530 invasive breast cancer tumors in Fudan University Shanghai Cancer Center (FUSCC) and 819 breast patients' data from TCGA. High LacRNA expression level had a significantly better clinical outcome in both cohorts and represented an independent prognostic predictor for DFS (HR=0.48, P=0.006, multivariate analysis) and OS (HR=0.32, P=0.009, multivariate analysis) in FUSCC cohort. Collectively, LacRNA functions as a tumor suppressor lncRNA that inhibits breast cancer invasion-metastasis cascade.
Citation Format: Guo R, Su Y-H, Xue J-y, Si J, Chi Y-y, Wu J. A novel cleaved cytoplasmic lncRNA LacRNA interacts with PHB2 and suppresses breast cancer metastasis via repressing MYC targets [abstract]. In: Proceedings of the 2018 San Antonio Breast Cancer Symposium; 2018 Dec 4-8; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2019;79(4 Suppl):Abstract nr P6-05-01.
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Affiliation(s)
- R Guo
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
| | - Y-H Su
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
| | - J-y Xue
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
| | - J Si
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
| | - Y-y Chi
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
| | - J Wu
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College, Shanghai, China
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Yu T, Feng Q, Si J, Xi H, O'Grady AP, Pinkard EA. Responses of riparian forests to flood irrigation in the hyper-arid zone of NW China. Sci Total Environ 2019; 648:1421-1430. [PMID: 30340287 DOI: 10.1016/j.scitotenv.2018.08.287] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 08/21/2018] [Accepted: 08/21/2018] [Indexed: 06/08/2023]
Abstract
Knowledge of forest water use is crucial to water resources managers, especially in arid environments. Flood irrigation has sometimes been used to ameliorate forest decline, however, there has only been limited research on vegetation responses to these interventions. We undertook a study to quantify evapotranspiration (ET) and its components, transpiration (T) and evaporation (E), of two Populus euphratica Oliv. stands (MA: middle-aged and OA: old-aged) with and without flood irrigation in the lower Heihe River Basin of NW China. ET and T were measured using eddy covariance and sap flow methods, respectively. Understory E was estimated by difference. Annual ET was 766.4 mm in the MA stand and 532.5 mm in the OA stand with an average of 4.2 and 2.9 mm d-1 during the growing season, respectively. ET of the MA stand was 44% higher than that of the OA stand, with contributions of 28% and 16% from E and T. Despite stand density, leaf area index and canopy cover being higher in the MA than OA stand sapwood area within the two stands was similar (MA 6.04 m2 ha-1 and OA 6.02 m2 ha-1). We hypothesised lower understory E and a lower E to ET ratio in the MA stand than OA stand. However, E was approximately 63% of ET in both stands. Therefore, we conclude that differences in ET, T and E were mainly associated with the flood irrigation. This was further supported by the comparable ET between the OA stand and the other studies in arid regions of Central Asia. In conclusion, flood irrigation has a less significant effect on canopy water use (T) than understory E suggesting alternatives to flood irrigation might be more appropriate in this water-limited ecosystem.
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Affiliation(s)
- Tengfei Yu
- Alax Desert Eco-Hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-Hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Hydrology and Water Resources Engineering Research Center, Lanzhou 730000, China.
| | - Qi Feng
- Alax Desert Eco-Hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-Hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Hydrology and Water Resources Engineering Research Center, Lanzhou 730000, China
| | - Jianhua Si
- Alax Desert Eco-Hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-Hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Hydrology and Water Resources Engineering Research Center, Lanzhou 730000, China
| | - Haiyang Xi
- Alax Desert Eco-Hydrology Experimental Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Eco-Hydrology of Inland River Basin, Chinese Academy of Sciences, Lanzhou 730000, China; Gansu Hydrology and Water Resources Engineering Research Center, Lanzhou 730000, China
| | - Anthony P O'Grady
- CSIRO Land and Water, 15 College Rd, Sandy Bay, Hobart 7005, Australia
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Si J, Aihong M, Hong Z. PO-128 MicroRNA-449A enhances the radiosensitivity of prostate cancer cells. ESMO Open 2018. [DOI: 10.1136/esmoopen-2018-eacr25.652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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Yu T, Feng Q, Si J, Mitchell PJ, Forster MA, Zhang X, Zhao C. Depressed hydraulic redistribution of roots more by stem refilling than by nocturnal transpiration for Populus euphratica Oliv. in situ measurement. Ecol Evol 2018; 8:2607-2616. [PMID: 29531680 PMCID: PMC5838069 DOI: 10.1002/ece3.3875] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 12/20/2017] [Accepted: 01/02/2018] [Indexed: 11/15/2022] Open
Abstract
During the night, plant water loss can occur either through the roots, as hydraulic redistribution (HR), or through the leaves via the stoma, as nocturnal transpiration (En), which was methodologically difficult to separate from stem refilling (Re). While HR and En have been reported across a range of species, ecosystem, and climate zone, there is little understanding on the interactions between En and/or Re and HR. As water movement at night occurs via gradients of water potential, it is expected that during periods of high atmospheric vapor pressure deficit (VPD), water loss via En will override water loss via HR. To test this hypothesis, sap flow in stems and roots of Populus euphratica Oliv. trees, growing in a riparian zone in a hyperarid climate, was measured once in a year. Nocturnal stem sap flow was separated into En and Re using the "forecasted refilling" method. Substantial nocturnal sap flow (38% of 24-hr flux on average) was observed and positively correlated with VPD; however, the strength of the correlation was lower (R2 = .55) than diurnal sap flow (Ed) (R2 = .72), suggesting that nocturnal stem sap flow was attributed to both water loss through the canopy and replenishment of water in stem tissues. Partitioning of nocturnal sap flow shows that Re constituted approximately 80%, and En ~20%, of nocturnal sap flow. The amount of root sap flow attributed to redistribution was negatively related to Ed (R2 = .69) and the amount of acropetally sap flow in stems, Re (R2 = .41) and En (R2 = .14). It was suggested that the magnitude of HR is more strongly depressed by Re that was recharge to the water loss via Ed than by En. It was consistent with whole-tree water balance theory, that the nighttime upward sap flow to xylem, stem refilling and transpiration, may depress hydraulic redistribution of roots.
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Affiliation(s)
- Tengfei Yu
- Alxa Desert Ecohydrology Experimental Research StationNorthwest Institute of Eco‐Environment and ResourcesChinese Academy of SciencesLanzhouChina
- Key Laboratory of Ecohydrology of Inland River BasinChinese Academy of SciencesLanzhouChina
| | - Qi Feng
- Alxa Desert Ecohydrology Experimental Research StationNorthwest Institute of Eco‐Environment and ResourcesChinese Academy of SciencesLanzhouChina
- Key Laboratory of Ecohydrology of Inland River BasinChinese Academy of SciencesLanzhouChina
| | - Jianhua Si
- Alxa Desert Ecohydrology Experimental Research StationNorthwest Institute of Eco‐Environment and ResourcesChinese Academy of SciencesLanzhouChina
- Key Laboratory of Ecohydrology of Inland River BasinChinese Academy of SciencesLanzhouChina
| | | | - Michael A. Forster
- Edaphic Scientific Pty LtdPort MacquarieNSWAustralia
- School of Agriculture and Food ScienceThe University of QueenslandBrisbaneAustralia
| | - Xiaoyou Zhang
- Alxa Desert Ecohydrology Experimental Research StationNorthwest Institute of Eco‐Environment and ResourcesChinese Academy of SciencesLanzhouChina
- Key Laboratory of Ecohydrology of Inland River BasinChinese Academy of SciencesLanzhouChina
| | - Chunyan Zhao
- Alxa Desert Ecohydrology Experimental Research StationNorthwest Institute of Eco‐Environment and ResourcesChinese Academy of SciencesLanzhouChina
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Si J, Yang B, Guo R, Huang N, Quan C, Chen J, Wu J. Abstract P3-01-06: Can axillary evaluation be omitted in patients preoperatively diagnosed with ductal carcinoma in situ by core needle biopsy? Cancer Res 2018. [DOI: 10.1158/1538-7445.sabcs17-p3-01-06] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Background
Patients diagnosed with ductal carcinoma in situ (DCIS) by core needle biopsy (CNB) have a great chance of upgrading invasive cancer on the final pathology. Positive axillary lymph nodes can be found in these patients. The present study sought to identify clinicopathological factors associated with upgrading and axillary lymph nodes metastasis in patients preoperatively diagnosed with DCIS by CNB.
Materials and Methods
This study identified 604 patients (cT1-3N0M0) with preoperative diagnosis of pure DCIS by CNB who had undergone axillary evaluation from August 2006 to December 2015 at Fudan University Shanghai Cancer Center (FUSCC). Predictors of upgrading and axillary lymph nodes metastasis were analyzed, respectively.
Results
Of all 604 patients, 513 (84.93%) and 91 (15.07%) patients had undergone sentinel lymph nodes biopsy (SLNB) and axillary lymph nodes dissection (ALND), respectively. Overall, 121 (20.03%) and 193 (31.95%) patients were upgraded to DCIS with microinvasion (DCISM) and IDC on final pathology, respectively. Positive axillary lymph nodes were identified in 41 (6.79%) patients, of which 35 (5.80%) patients had 1-2 positive axillary lymph nodes, 6 (0.99%) patients had 3 or more positive axillary lymph nodes. Among patients with axillary lymph nodes metastasis, 4 (9.76%), 4 (9.76%) and 33 (80.48%) patients were in DCIS, DCISM and IDC group, respectively. Predictors of upgrading included tumor size on ultrasonography (P=0.001), Ki-67 (P=0.046) and molecular subtype (P=0.007) in univariate analysis. In multivariate analysis, patients with larger tumor size on ultrasonography (>2cm) (OR 1.767, P=0.001) were more likely to be upgraded on final pathology. Also, ER+ HER2+ patients were more likely to be upgraded than ER+ HER2- patients (OR 1.659, P=0.047). Factors associated with axillary lymph nodes metastasis included nipple discharge (P<0.001), tumor size on pathology (P=0.037), number of lesions (P=0.039), axillary evaluation methods (P=0.029) and molecular subtype (P=0.049) in univariate analysis. Whereas, only nipple discharge and larger tumor size on pathology (>2cm) reached statistical significance in multivariate analysis (OR 5.959, P<0.001; OR 2.361, P=0.042). In addition, further analysis showed upgrading on final pathology had a significant influence on axillary lymph nodes status (P<0.001). However, this correlation was not shown between patients with DCIS and DCISM in pairwise comparison.
Conclusion
The data of upgrading and axillary lymph nodes metastasis in patients with an initial diagnosis of DCIS by CNB was comparable in this cohort with published data. Despite of a 51.98% upgrading rate, the rate of axillary lymph nodes metastasis in these patients is low, which supports the omission of axillary evaluation in selected patients.
Citation Format: Si J, Yang B, Guo R, Huang N, Quan C, Chen J, Wu J. Can axillary evaluation be omitted in patients preoperatively diagnosed with ductal carcinoma in situ by core needle biopsy? [abstract]. In: Proceedings of the 2017 San Antonio Breast Cancer Symposium; 2017 Dec 5-9; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2018;78(4 Suppl):Abstract nr P3-01-06.
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Affiliation(s)
- J Si
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - B Yang
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - R Guo
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - N Huang
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - C Quan
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - J Chen
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
| | - J Wu
- Fudan University Shanghai Cancer Center, Shanghai, China; Fudan University, Shanghai Medical College; Collaborative Innovation Center for Cancer Medicine
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Wang L, Lin Z, Chen S, Li J, Chen C, Huang Z, Ye B, Ding J, Li W, Wu L, Jiang Y, Meng L, Du Q, Si J. Ten-day bismuth-containing quadruple therapy is effective as first-line therapy for Helicobacter pylori –related chronic gastritis: a prospective randomized study in China. Clin Microbiol Infect 2017; 23:391-395. [DOI: 10.1016/j.cmi.2016.12.032] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Revised: 12/25/2016] [Accepted: 12/28/2016] [Indexed: 12/14/2022]
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Liu W, Wang J, Wang L, Qian C, Qian Y, Xuan H, Zhuo W, Li X, Yu J, Si J. Ras-association domain family 10 acts as a novel tumor suppressor through modulating MMP2 in hepatocarcinoma. Oncogenesis 2016; 5:e237. [PMID: 27348267 PMCID: PMC4945738 DOI: 10.1038/oncsis.2016.24] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2015] [Revised: 01/21/2016] [Accepted: 01/28/2016] [Indexed: 12/21/2022] Open
Abstract
Ras-Association Domain Family 10 (RASSF10) is the last identified member of the RASSF family. The functional characteristics of this new gene in human cancers remain largely unclear. Here, we examined RASSF10 for the biological functions and related molecular mechanisms in hepatocellular carcinoma (HCC). We found that RASSF10 is expressed in normal human liver tissue, but is silenced or down-regulated in 62.5% (5/8) of HCC cell lines. The mean expression level of RASSF10 was significantly lower in primary HCCs compared with their adjacent normal tissues (P<0.005, n=52). The promoter methylation contributes to the inactivation of RASSF10 as demonstrated by bisulfite genomic sequencing and demethylation treatment analyses. Transgenic expression of RASSF10 in silenced HCC cell lines suppressed cell viability, colony formation and inhibited tumor growth in nude mice (QGY7703, P<0.01; HepG2, P<0.05). Furthermore, RASSF10 was shown to induce the cell accumulation in G1 phase with the increase of p27, as well as the decrease of cyclinD1 and CDK2/CDK4. Over-expression of RASSF10 also inhibited HCC cells migration (P<0.01) or invasion (P<0.05). Adhesion genes array revealed that Matrix Metalloproteinase 2 (MMP2) was a downstream effector of RASSF10. RASSF10 acting as a tumor suppressor to inhibit HCC invasion partially mediated by Focal Adhesion Kinase or p38 MAPK to decrease the accumulation of MMP2. Our study suggests that RASSF10 acts as a tumor suppressor for HCC.
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Affiliation(s)
- W Liu
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - J Wang
- Postgraduate at Institute of Gastroenterology, Zhejiang University; The First People's Hospital of Xiaoshan, Hangzhou, China
| | - L Wang
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - C Qian
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - Y Qian
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - H Xuan
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - W Zhuo
- Institute of Gastroenterology, Zhejiang University, Hangzhou, China
| | - X Li
- Institute of Digestive Disease and Department of Medicine and Therapeutics, State Key Laboratory of Digestive Disease, Li Ka Shing Institute of Health Sciences, Chinese University of Hong Kong, Hong Kong, China
| | - J Yu
- Institute of Digestive Disease and Department of Medicine and Therapeutics, State Key Laboratory of Digestive Disease, Li Ka Shing Institute of Health Sciences, Chinese University of Hong Kong, Hong Kong, China
| | - J Si
- Department of Gastroenterology, Sir Run Run Shaw Hospital, Zhejiang University, Hangzhou, China.,Institute of Gastroenterology, Zhejiang University, Hangzhou, China
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Si J, Feng Q, Yu T, Zhao C, Li W. Variation in Populus euphratica foliar carbon isotope composition and osmotic solute for different groundwater depths in an arid region of China. Environ Monit Assess 2015; 187:705. [PMID: 26502726 DOI: 10.1007/s10661-015-4890-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Accepted: 09/22/2015] [Indexed: 06/05/2023]
Abstract
Water use efficiency (WUE) is an important trait associated with plant acclimation caused by water deficits, and δ13C is a good surrogate of WUE under conditions of water deficits. Water deficiency also enhances the accumulation of compatible solutes in the leaves. In this study, variations in foliar δ(13)C values and main osmotic solutes were investigated. Those included total soluble sugar (TSS), sucrose, free proline, glycine betaine (GB), and inorganic ionic (K+, Ca2+, and Cl-) content of Populus euphratica for different groundwater depths in a Ejina desert riparian forest, China. Results indicated that foliar δ13C values in the P. euphratica for different groundwater depths ranged from -29.14±0.06 to -25.84±0.04 ‰. Foliar δ13C signatures became richer as groundwater levels declined. TSS, sucrose, free proline, GB, and K+ were accumulated in P. euphratica foliage with developing plant growth and increasing groundwater depth. Ca2+ and Cl- content increased under stronger P. euphratica transpiration rates for shallower groundwater depths (1-2.5 m) and decreased for deeper groundwater depths (greater than 3.0 m). Moreover, correlations between δ13C, osmotic solutes, and groundwater depths showed that the primary osmotic solutes were TSS, sucrose, proline, GB, and K+. Correlations also showed that δ13C was not only a useful measure for P. euphratica-integrated WUE but also could be used as an indicator reflecting some physiological osmotic indexes.
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Affiliation(s)
- Jianhua Si
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzou, 730000, China.
| | - Qi Feng
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzou, 730000, China
| | - Tengfei Yu
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzou, 730000, China
| | - Chunyan Zhao
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzou, 730000, China
| | - Wei Li
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzou, 730000, China
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Feng Q, Miao Z, Li Z, Li J, Si J, S Y, Chang Z. Public perception of an ecological rehabilitation project in inland river basins in northern China: Success or failure. Environ Res 2015; 139:20-30. [PMID: 25686489 DOI: 10.1016/j.envres.2014.12.030] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Revised: 11/13/2014] [Accepted: 12/13/2014] [Indexed: 06/04/2023]
Abstract
The need for environmental protection challenges societies to deal with difficult problems because strategies designed by scientists to protect the environment often create negative effects on impoverished local residents. We investigated the effects of China's national and regional policies related to environmental protection and rehabilitation projects in inland river basins, by studying the effect of projects in the Heihe and Shiyang river basins, in northwest China. Interviews and surveys were conducted at 30 sites in the lower reaches of these two arid basins, an area that has experienced severe ecological degradation. The survey results show the ecological rehabilitation projects adversely affected the livelihoods of 70.35% of foresters, 64.89% of farmers and 62.24% of herders in the Minqing region in the lower Shiyang River Basin; also, the projects negatively affected 51.9% of residents in the Ejin Qi in the lower Heihe River Basin. This caused 16.33% of foresters, 39.90% of farmers and 45.32% of herders in the Minqing region to not support the project and 37.5% of residents in the Ejin Qi region said they will deforest and graze again after the project ends. The negative impacts of the policies connected to the projects cause these attitudes. The projects prohibit felling and grazing and require residents to give up groundwater mining; this results in a great amount of uncompensated economic loss to them. Extensive survey data document the concerns of local residents, concerns that are supported by the calculation of actual incomes. In addition, the surveys results show poorer interviewees believe the projects greatly affected their livelihoods. While citizens in this region support environment protection work, the poor require considerable assistance if one expects them to support this type of work. Governmental assistance can greatly improve their living conditions, and hence encourage them to participate in and support the implementation of the projects within and outside the districts where they live.
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Affiliation(s)
- Qi Feng
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China; The College of Tourism and Environment, Shaanxi Normal University, Xi'an 710062, Shaan Xi Province, China.
| | - Zheng Miao
- Organization Department of Gansu provincial party committee, Communist Party of China, China.
| | - Zongxing Li
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China.
| | - Jianguo Li
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China.
| | - Jianhua Si
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China.
| | - Yonghong S
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China.
| | - Zongqiang Chang
- Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou 730000, Gansu Province, China.
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Abstract
RNA transcripts, which do not encode proteins, have received considerable attention in recent years. These non-coding RNAs are classified into two groups: small non-coding RNAs and long non-coding RNAs (lncRNAs). Increasing evidence suggests that lncRNAs are emerging as key regulators in many biological processes. However, knowledge of the underlying mechanisms whereby they act is still limited. Here, we try to elucidate the way that lncRNAs function in the context of DNA, RNA and protein interaction networks. It is noteworthy that lncRNA and another type of non-coding RNA microRNA (miRNA) may 'talk' to each other more frequently than ever expected. Additionally, lncRNAs display aberrant expression profiles in different kinds of cancers, with their potential roles in carcinogenesis and cancer metastasis. We summarize the effect of some cancer related lncRNAs upon tumor biological events, including cell proliferation, apoptosis, invasion and metastasis. Finally, we focus on the clinical value of lncRNAs, considering their potential application in cancer diagnosis, prognosis and therapeutic intervention.
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Si J, Feng Q, Cao S, Yu T, Zhao C. Water use sources of desert riparian Populus euphratica forests. Environ Monit Assess 2014; 186:5469-5477. [PMID: 24816539 DOI: 10.1007/s10661-014-3796-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2013] [Accepted: 04/30/2014] [Indexed: 06/03/2023]
Abstract
Desert riparian forests are the main body of natural oases in the lower reaches of inland rivers; its growth and distribution are closely related to water use sources. However, how does the desert riparian forest obtains a stable water source and which water sources it uses to effectively avoid or overcome water stress to survive? This paper describes an analysis of the water sources, using the stable oxygen isotope technique and the linear mixed model of the isotopic values and of desert riparian Populus euphratica forests growing at sites with different groundwater depths and conditions. The results showed that the main water source of Populus euphratica changes from water in a single soil layer or groundwater to deep subsoil water and groundwater as the depth of groundwater increases. This appears to be an adaptive selection to arid and water-deficient conditions and is a primary reason for the long-term survival of P. euphratica in the desert riparian forest of an extremely arid region. Water contributions from the various soil layers and from groundwater differed and the desert riparian P. euphratica forests in different habitats had dissimilar water use strategies.
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Affiliation(s)
- Jianhua Si
- Alashan Desert Ecohydrology Experimental Research Station, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, 730000, China,
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Abstract
The toxic effects of x-ray radiation on eye development was measured using zebrafish as a model organism. Zebrafish embryos at 8 h post-fertilization (hpf) were irradiated using X-rays at doses of 1, 2, 4, and 8 Gy. At 24 and 48 hpf, x-ray radiation induced a significant increase in reactive oxygen species (ROS) content and cell apoptotic signals. Both of these increases were dose dependent and there were significant positive relationships between them at 24 hpf. At 48 and 72 hpf, the increase of ROS concentration can be eliminated by increasing activities of superoxide dismutase and catalase. Although the ROS generated by x-ray radiation caused a significant increase in cell apoptosis at 24 and 48 hpf, the cellular layers of the retina and lens formation in the irradiated groups were not significantly disrupted at 144 hpf compared with the control group, with the exception of a heterogeneous distribution of the cells in inner nuclear cell layer and a significant decrease in the diameters of whole eyes after 8 Gy irradiation. X-Ray radiation at later stages of gastrulation may not cause distinct optic complications; however, there is still a risk of microophthalmia at high doses of irradiation.
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Affiliation(s)
- R Zhou
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
| | - J Si
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
| | - H Zhang
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
| | - Z Wang
- School/Hospital of Stomatology, Lanzhou University, Lanzhou, China
| | - J Li
- College of Life Sciences, Northwest Normal University, Lanzhou, China
| | - X Zhou
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
| | - L Gan
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
| | - Y Liu
- Department of Medical Physics, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Biology and Medicine, Chinese Academy of Sciences, Lanzhou, China
- Key Laboratory of Heavy Ion Radiation Medicine of Gansu Province, Lanzhou, China
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Si J, Huang S, Shi H, Liu Z, Hu Q, Wang G, Shen G, Zhang D. Usefulness of 3T diffusion-weighted MRI for discrimination of reactive and metastatic cervical lymph nodes in patients with oral squamous cell carcinoma: a pilot study. Dentomaxillofac Radiol 2014; 43:20130202. [PMID: 24408820 DOI: 10.1259/dmfr.20130202] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
OBJECTIVES To study the diagnostic accuracy of 3T diffusion-weighted MRI (DW-MRI) for the discrimination of reactive and metastatic cervical lymph nodes in patients with oral squamous cell carcinoma. METHODS DW T1 and T2 weighted MRI was performed in 25 patients with biopsy-proved primary oral squamous cell carcinoma. The mean apparent diffusion coefficient (ADC) values of 30 histopathologically proved reactive lymph nodes and 21 histopathologically proved metastatic lymph nodes were compared using an unpaired t-test. A cut-off ADC value with optimal diagnostic sensitivity, specificity and area under the curve in discrimination of the two groups was determined using a receiver operating characteristic curve analysis. RESULTS The mean ADC values of reactive lymph node and metastatic lymph node groups were (1.037 ± 0.149) × 10(-3) and (0.702 ± 0.197) × 10(-3) mm(2) s(-1), respectively. A statistically significant difference in ADC values of the two groups was certified (p < 0.0001). An optimal ADC threshold value of 0.887 × 10(-3) mm(2) s(-1) was suggested as the cut-off point, which resulted in 93.33% sensitivity, 80.95% specificity, 88.20% accuracy and area under curve of 0.887. CONCLUSIONS Our preliminary study indicates that the addition of 3T DW-MRI may be useful for discriminating between reactive lymph nodes and metastatic lymph nodes in patients with oral squamous cell carcinoma. However, larger studies are still required to validate our results and to standardize this imaging technique for daily clinical practice.
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Affiliation(s)
- J Si
- Department of Oral and Maxillofacial Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China
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Abstract
This paper focuses on a systematic treatment for developing a generic online learning control system based on the fundamental principle of reinforcement learning or more specifically neural dynamic programming. This online learning system improves its performance over time in two aspects: 1) it learns from its own mistakes through the reinforcement signal from the external environment and tries to reinforce its action to improve future performance; and 2) system states associated with the positive reinforcement is memorized through a network learning process where in the future, similar states will be more positively associated with a control action leading to a positive reinforcement. A successful candidate of online learning control design is introduced. Real-time learning algorithms is derived for individual components in the learning system. Some analytical insight is provided to give guidelines on the learning process took place in each module of the online learning control system.
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Affiliation(s)
- J Si
- Department of Electrical Engineering, Arizona State University, Tempe, AZ 85287-7606, USA.
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Lei Yang, Si J, Tsakalis K, Rodriguez A. Direct Heuristic Dynamic Programming for Nonlinear Tracking Control With Filtered Tracking Error. ACTA ACUST UNITED AC 2009; 39:1617-22. [DOI: 10.1109/tsmcb.2009.2021950] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Si J, Zhu G. [Application of expressed sequence tag (EST) in parasite genome research]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi 2009; 17:311-4. [PMID: 12563868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
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Gu B, Si J, Liu F, Xu Y, Andersson K. POS-01.121: Improving voiding efficiency in the diabetic rat by a 5-HT1A serotonin receptor agonist. Urology 2007. [DOI: 10.1016/j.urology.2007.06.823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Abstract
Principle component analysis (PCA) was performed on recorded neuronal action potentials from neural ensembles in rat's motor cortex when the rat was involved in a closed-loop real-time brain machine interface (BCI). The implanted rat was placed in a conditioning chamber, but freely moving, to decide which one of the two paddles should be activated to shift the light to the center. It is found that the principle component feature vectors revealed the importance of individual neurons and their temporal dynamics in relation to the intention of activating either left or right paddle. In addition, the first principle component feature has much higher discriminative capability than others although it represents only a few percentage of the total variance. Using the first principle component with the Bayes classifier achieved 90% classification accuracy, which is comparable with the accuracy obtained by a more sophisticated high performance support vector classifiers.
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Affiliation(s)
- J Hu
- Department of Electrical Engineering, Arizona State University, Tempe, AZ, USA
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Zhu Y, Si J, Harn DA, Xu M, Ren J, Yu C, Liang Y, Yin X, He W, Cao G. Schistosoma japonicum triose-phosphate isomerase plasmid DNA vaccine protects pigs against challenge infection. Parasitology 2006; 132:67-71. [PMID: 16393355 DOI: 10.1017/s0031182005008644] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2005] [Revised: 06/22/2005] [Accepted: 06/22/2005] [Indexed: 11/06/2022]
Abstract
The protective efficacy of a Schistosoma japonicum, Chinese strain, triose-phosphate isomerase (TPI) plasmid DNA vaccine was examined in naïve pigs. Pigs were vaccinated with the TPI DNA-plasmid alone, or in conjunction with IL-12 as pcDNA3.1-P35, pcDNA3.1-P40 plasmids via intramuscular injection. Control pigs were immunized with equivalent amounts of pcDNA3.1. Pigs were immunized 3 times at 21-day intervals and challenged 30 days after the final boost. Forty-five days post-challenge, pigs were sacrificed and perfused to compare adult worm burdens, female worm burdens, liver egg burdens and granuloma size. We found that pigs vaccinated with SjCTPI DNA alone had adult worm burdens reduced by 48.3% and that a further decrease in adult worm burdens was not seen in the group vaccinated with SjCTPI DNA in conjunction with IL-12 (46.2% reduction). The SjCTPI DNA vaccines had a more pronounced effect on reducing female worm burdens i.e. 53.6% SjCTPI alone and 59.6% for SjCTPI+IL-12. Vaccination with SjCTPI-DNA reduced liver eggs by 49.4% and this response was significantly enhanced by the addition of IL-12 (65.8% reduction in liver eggs). In addition to the dramatic protective effects seen in vaccinated pigs, we also noted that granuloma size was reduced by 42% in both groups. Thus, vaccination of pigs and other large animals in China with SjCTPI DNA vaccine will likely reduce transmission by reducing adult worm burdens and worm egg output and simultaneously reduce hepatic egg-associated pathology.
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Affiliation(s)
- Y Zhu
- Jiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu 214064, PR China.
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Si J. Society briefs - Welcome to the CIS multimedia tutorials center! IEEE COMPUT INTELL M 2006. [DOI: 10.1109/mci.2006.1626498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Si J, Fritts C, Waldroup P, Burnham D. Effects of Tryptophan to Large Neutral Amino Acid Ratios and Overall Amino Acid Levels on Utilization of Diets Low in Crude Protein by Broilers. J APPL POULTRY RES 2004. [DOI: 10.1093/japr/13.4.570] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Si J, Fritts C, Waldroup P, Burnham D. Effects of Excess Methionine from Meeting Needs for Total Sulfur Amino Acids on Utilization of Diets Low in Crude Protein by Broiler Chicks. J APPL POULTRY RES 2004. [DOI: 10.1093/japr/13.4.579] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Schroder L, Basta NT, Casteel SW, Evans TJ, Payton ME, Si J. Validation of the in vitro gastrointestinal (IVG) method to estimate relative bioavailable lead in contaminated soils. J Environ Qual 2004; 33:513-521. [PMID: 15074802 DOI: 10.2134/jeq2004.5130] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The effect of the dosing vehicle (e.g., dough) on the ability of an in vitro gastrointestinal (IVG) method to predict relative bioavailable Pb associated with soil ingestion was evaluated. Bioaccessible Pb determined by the IVG method was compared with relative bioavailable Pb measured from dosing trials using juvenile swine for 18 contaminated soils ranging from 1270 to 14200 mg Pb kg(-1). Bioaccessible Pb was measured in the IVG gastric extraction (GE) and intestinal extraction (IE) solutions. Mean bioaccessible Pb values were 32.2% for GE without dough, 23.0% for GE with dough, 1.06% for IE without dough, and 0.56% for IE with dough. It is possible that phytic acid associated with the dough addition decreased bioaccessible Pb. In vivo relative bioavailable Pb ranges for different swine tissues were 1 to 87% for blood, 0 to 110% for liver, 1 to 124% for kidney, and 0.04 to 94% for bone. Strong linear relationships between IVG GE Pb with dough (r > 0.76, P < 0.0002), IVG IE Pb with dough (r > 0.56, P < 0.015), and IVG GE Pb without dough (r > 0.81, P < 0.0001) and in vivo bioavailable Pb as estimated with blood, kidney, liver, and bone were found. Inexpensive in vitro methods may be useful in providing an estimate of the variability in relative bioavailable Pb at a single study site. The IVG method can be used to estimate relative bioavailable Pb, As, and Cd in contaminated soil.
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Affiliation(s)
- L Schroder
- Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK 74078, USA
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Schroder JL, Basta NT, Casteel SW, Evans TJ, Payton ME, Si J. Validation of the In Vitro Gastrointestinal (IVG) Method to Estimate Relative Bioavailable Lead in Contaminated Soils. ACTA ACUST UNITED AC 2004. [DOI: 10.2134/jeq2004.0513] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ren JG, Zhu YC, Harn DA, Yu CX, Yin XR, Si J, He W, Xu M, Hua WQ, Xu YL. [Protective immunity induced by 23 kDa membrane protein DNA vaccine of Schistosoma japonicum Chinese strain in mice]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi 2003; 19:336-9. [PMID: 12572063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
Abstract
OBJECTIVE To develop 23 kDa membrane protein DNA vaccine of Schistosoma japonicum Chinese strain and test its protective efficacy in infected C57BL/6 mice. METHODS The full length cDNA encoding SjC23 amplified from pUC19-SjC23 subcloned into pcDNA3.1. 48 female mice were divided into three groups: A, B and C. Group A (control group) was each immunized i.m. with 100 micrograms of pcDNA3.1; group B (SjC23 group) was each immunized i.m. with 100 micrograms of pcDNA3.1-SjC23; group C (SjC23 + IL-12) was each immunized i.m. with a mixture of 100 micrograms of pcDNA3.1-SjC23, 100 micrograms of pcDNA3.1-p35 and 100 micrograms of pcDNA-p40, followed by two boosts of the same DNA once every two weeks. All the mice were challenged with 45 cercariae at week 8, killed and perfused for worms at week 14. The expression of SjC23 and p35, p40 in muscle tissue was determined by immuno-histochemical method. By the culture of spleen cells, the production of IL-2, IL-4, IL-10 and IFN-gamma after the stimulation of rSjC23-HD was determined two weeks before and after challenge. Anti-SjC23 antibodies were tested by Western blotting. RESULTS SjC23 and p35, p40 were all expressed on the membrane and in the plasma of muscle cells of the infected mice. Significant increase of IL-2 and IFN-gamma in SjC23 and SjC23 + IL-12 groups was observed before and after challenge. Western blotting showed that after the third immunization (before challenge) 8 out of 10 sera from SjC23 group and 9 out of 10 sera from SjC23 + IL-12 group were positive. The worm reduction rate in SjC23 group and SjC23 + IL-12 group was 26.9% and 35.4%, respectively; the number of eggs in liver tissue was reduced by 22.2% and 28.4%, respectively. CONCLUSION pcDNA3.1-SjC23 DNA vaccine could induce partial protection against Schistosoma japonicum in C57BL/6 mice.
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Affiliation(s)
- J G Ren
- Jiangsu Institute of Parasitic Diseases, Wuxi 214064
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Si J, Zhou W, Wu J, Cao Q, Xiang Z, Jiang L, Lü W, Huang H. Establishment of an animal model of chronic atrophic gastritis and a study on the factors inducing atrophy. Chin Med J (Engl) 2001; 114:1323-5. [PMID: 11793864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023] Open
Abstract
OBJECTIVE To establish a rat model of chronic atrophic gastritis and explore the factors inducing atrophy. METHODS In accordance with repeated orthogonal design of L8(2(7)), 60% alcohol and 20 mmol/L sodium deoxycholate (served as factor A), 0.05%-0.1% ammonia water (factor B), 0.05% indomethacin (factor C) were given, alone or in combination, to rats in three experiments for 3 months, 6 months or 9 months respectively. Then the rats were dissected, and their pathologic changes of the gastric mucosa were assessed. RESULTS Typical signs of chronic atrophic gastritis (CAG) were found in all rats which were treated with factor A, B, C alone or in combination for 6 or 9 months. No significant difference of pathologic changes of gastric mucosa was found between the rats treated for 6 months and those for 9 months. No obvious CAG signs were found in the rats treated with factor A, B, C for 3 months. CONCLUSION Sixty percent of alcohol, 20 mmol/L sodium deoxycholate, 0.05%-0.1% ammonia water and 0.05% indomethacin given to Sprague-Dawley rats for 6 months can successfully establish the animal model of CAG. Prolongation of the model-establishment time is not able to further facilitate the atrophy of gastric mucosa.
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Affiliation(s)
- J Si
- Department of Gastroenterology, Sir Run Run Shaw Affiliated Hospital of Zhejiang University, Hangzhou 310016, China
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Si J, Fritts CA, Burnham DJ, Waldroup PW. Relationship of dietary lysine level to the concentration of all essential amino acids in broiler diets. Poult Sci 2001; 80:1472-9. [PMID: 11599707 DOI: 10.1093/ps/80.10.1472] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
A study was conducted to evaluate the relationship of dietary Lys and other essential amino acids (EAA) in diets for broilers. Diets were formulated based upon NRC (1994) recommendations. Within each age period, diets contained NRC recommended levels of Lys with other EAA at 100, 110, 120, or 130% of NRC. The diets were then supplemented with 0.1, 0.2, or 0.3% additional Lys, resulting in a 4 x 4 factorial arrangement with four levels of Lys (NRC, + 0.1%, + 0.2%, and + 0.3% Lys) and four levels of other EAA (100, 110, 120, and 130% of NRC). Each of the 16 treatments was fed to six replicate pens of 25 male broilers of a commercial strain. At 56 d, five birds per pen were processed to determine dressing percentage and carcass yield. There were no significant interactions between level of Lys and levels of other EAA for live performance or carcass characteristics. The BW was significantly increased at 21 and 42 d by addition of + 0.1% Lys above NRC but not at 56 d. There was no significant effect of other EAA on BW at any age. The effects of Lys on feed conversion were varied. At 21 and 42 d, addition of 0.1% Lys to diets containing the NRC Lys level significantly improved feed conversion; response to 0.2 or 0.3% Lys were varied. No significant effects of Lys on feed conversion were observed at 56 d. Increasing the level of EAA resulted in significant improvements in feed conversion at 21, 42, and 56 d, generally following a linear trend. Dietary Lys levels had no significant effects on dressing percentage, breast meat yield, or abdominal fat content. The level of other EAA significantly influenced dressed yield but had no significant influence on carcass yield. These results indicate that NRC (1994) levels of Lys and other EAA are adequate for optimum performance of male broilers processed at 56 d but may be less than adequate at younger ages.
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Affiliation(s)
- J Si
- Poultry Science Department, University of Arkansas, Fayetteville 72701, USA
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Si J. [The compliance of patients to medical prescriptions]. Zhonghua Nei Ke Za Zhi 2001; 40:507-8. [PMID: 11718046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
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Abstract
We report on photoinduced second-harmonic generation (SHG) in chalcogenide glasses. Fundamental and second-harmonic waves from a nanosecond pulsed Nd:YAG laser were used to induce second-order nonlinearity in chalcogenide glasses. The magnitude of SHG in 20G?20A?60S glass was 10(4) larger than that of tellurite glass with a composition of 15Nb(2)O (5) 85TeO(2) (mol.%). Moreover, no apparent decay of photoinduced SHG in 20G?20A?60S glass was observed after optical poling at room temperature. We suggest that the large and stable value of chi((2)) is due to the induced defect structures and large chi((3)) of the chalcogenide glasses.
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Xue-Bin Liang, Si J. Global exponential stability of neural networks with globally Lipschitz continuous activations and its application to linear variational inequality problem. ACTA ACUST UNITED AC 2001; 12:349-59. [DOI: 10.1109/72.914529] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Wu J, Si J, Cao Q, Lü W, Weng J, Lü B, Dai N. [The effect of epidermal growth factor on the pathologic changes of gastric mucosa in SD rats with chronic atrophic gastritis]. Zhonghua Nei Ke Za Zhi 2001; 40:169-72. [PMID: 11798573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
OBJECTIVE To study the effect of epidermal growth factor (EGF) on the pathologic changes of gastric mucosa in rats with chronic atrophic gastritis(CAG). METHODS The established rat models of CAG were divided into therapy group and control group. The rats in the therapy group received EGF 10 microg/kg subcutaneously (SC), whereas these in the control group the same volume of normal saline SC. 12 weeks later, all rats were killed by cervical dislocation and their gastric mucosa were examined with microscope. RESULTS The grade of inflammatory cell infiltration in the therapy group was lower than that in the control group (P < 0.01). The thickness of gastric mucosal gland layer was (215.0 +/- 20.7) microm in the therapy group and (139.2 +/- 13.8) microm in the control group (P < 0.01). The ratio of the thickness of gastric mucosal glands and muscularis mucosa(L(1)/L(2)) was 2.70 +/- 0.34 in the therapy group and 1.27 +/- 0.27 in the control group (P < 0.01). The number of gastric glands in 1 mm length of mucosal layer was 26.20 +/- 1.27 in the therapy group and 19.90 +/- 1.78 in the control group (P < 0.01). In the therapy group, the gastric glands were rearranged in order, without signs of malignant proliferation. The width of the expression of proliferating cell nuclear antigen (PCNA ) of gastric mucosa was higher in the therapy group than in the control group [(77.70 +/- 4.16) microm vs (54.40 +/- 4.54) microm, P < 0.01]. CONCLUSIONS EGF played a therapeutic role in reversing the gastric mucosal atrophy of the rats with CAG. It promoted the expression of PCNA, which induced a protective proliferation of the gastric mucosal lesions in the rats with CAG.
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Affiliation(s)
- J Wu
- Department of Gastroenterology of Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hongzhou 310016, China
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