1
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Sawmynaden K, Wong N, Davies S, Cowan R, Brown R, Tang D, Henry M, Tickle D, Matthews D, Carr M, Bakrania P, Hoi Ting H, Hall G. Co-crystallisation and humanisation of an anti-HER2 single-domain antibody as a theranostic tool. PLoS One 2023; 18:e0288259. [PMID: 37459326 PMCID: PMC10351726 DOI: 10.1371/journal.pone.0288259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 06/22/2023] [Indexed: 07/20/2023] Open
Abstract
Human epidermal growth factor receptor-2 (HER2) is a well-recognised biomarker associated with 25% of breast cancers. In most cases, early detection and/or treatment correlates with an increased chance of survival. This study, has identified and characterised a highly specific anti-HER2 single-domain antibody (sdAb), NM-02, as a potential theranostic tool. Complete structural description by X-ray crystallography has revealed a non-overlapping epitope with current anti-HER2 antibodies. To reduce the immunogenicity risk, NM-02 underwent a humanisation process and retained wild type-like binding properties. To further de-risk the progression towards chemistry, manufacturing and control (CMC) we performed full developability profiling revealing favourable thermal and physical biochemical 'drug-like' properties. Finally, the application of the lead humanised NM-02 candidate (variant K) for HER2-specific imaging purposes was demonstrated using breast cancer HER2+/BT474 xenograft mice.
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Affiliation(s)
| | | | - Sarah Davies
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - Richard Cowan
- Department of Molecular and Cell Biology, Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester, United Kingdom
| | - Richard Brown
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - David Tang
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - Maud Henry
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - David Tickle
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - David Matthews
- LifeArc, Open Innovation Campus, Stevenage, United Kingdom
| | - Mark Carr
- Department of Molecular and Cell Biology, Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester, United Kingdom
| | | | | | - Gareth Hall
- Department of Molecular and Cell Biology, Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester, United Kingdom
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2
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Huang JH, Wittekind SG, Opotowsky AR, Ward K, Lyman A, Gauthier N, Vernon M, Powell AW, White DA, Curran TJ, Orr WB, Stephens P, Robinson B, Pham TD, Mays WA, Burstein D, Carr M, Paridon S, Rhodes J, Koenig P. Pediatric Cardiology Fellowship Standards for Training in Exercise Medicine and Curriculum Outline. Pediatr Cardiol 2023; 44:540-548. [PMID: 36422652 DOI: 10.1007/s00246-022-03048-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 11/04/2022] [Indexed: 11/25/2022]
Abstract
Over the past 2 decades, fundamentals of exercise medicine, including clinical exercise testing, assessment and promotion of physical activity, exercise prescription, and supervised exercise training/rehabilitation programming have demonstrated considerable clinical value in the management of children and adolescents with congenital and acquired heart disease. Although the principles of exercise medicine have become an integral component in pediatric cardiology, there are no standardized training recommendations for exercise physiology during pediatric cardiology fellowship at this time. Thus, the Pediatric Cardiology Exercise Medicine Curriculum Committee (PCEMCC) was formed to establish core and advanced exercise physiology training recommendations for pediatric cardiology trainees. The PCEMCC includes a diverse group of pediatric cardiologists, exercise physiologists, and fellowship program directors. The expert consensus training recommendations are by no means a mandate and are summarized herein, including suggestions for achieving the minimum knowledge and training needed for general pediatric cardiology practice.
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Affiliation(s)
- J H Huang
- Department of Pediatrics, Doernbecher Children's Hospital, Oregon Health and Science University, Portland, OR, USA.
| | - S G Wittekind
- Division of Cardiology, Seattle Children's Hospital, Seattle, WA, USA
| | - A R Opotowsky
- Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.,The Heart Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA
| | - K Ward
- Northwestern University Feinberg School of Medicine, Chicago, IL, USA.,Division of Cardiology, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA
| | - A Lyman
- Department of Pediatrics, Doernbecher Children's Hospital, Oregon Health and Science University, Portland, OR, USA
| | - N Gauthier
- Department of Cardiology, Boston Children's Hospital, Boston, MA, USA
| | - M Vernon
- Division of Cardiology, Seattle Children's Hospital, Seattle, WA, USA
| | - A W Powell
- Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.,The Heart Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA
| | - D A White
- Ward Family Heart Center, Children's Mercy Hospital, Kansas City, MO, USA
| | - T J Curran
- Department of Cardiology, Boston Children's Hospital, Boston, MA, USA
| | - W B Orr
- Division of Pediatric Cardiology, Washington University School of Medicine, St. Louis, MO, USA
| | - P Stephens
- Division of Cardiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA
| | - B Robinson
- Nemours Cardiac Center, Alfred I DuPont Hospital for Children, Wilmington, DE, USA
| | - T D Pham
- Department of Cardiology, Texas Children's Hospital, Houston, TX, USA
| | - W A Mays
- The Heart Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA
| | - D Burstein
- Division of Pediatric Cardiology, University of Vermont, Burlington, VT, USA
| | - M Carr
- Northwestern University Feinberg School of Medicine, Chicago, IL, USA.,Division of Cardiology, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA
| | - S Paridon
- Division of Cardiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA
| | - J Rhodes
- Department of Cardiology, Boston Children's Hospital, Boston, MA, USA
| | - P Koenig
- Northwestern University Feinberg School of Medicine, Chicago, IL, USA.,Division of Cardiology, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA
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3
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Salton M, Carr M, Tarjan LM, Clarke J, Kirkwood R, Slip D, Harcourt R. Protected area use by two sympatric marine predators repopulating their historical range. ENDANGER SPECIES RES 2021. [DOI: 10.3354/esr01129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
As large carnivores recover from over-exploitation, managers often lack evidence-based information on species habitat requirements and the efficacy of management practices, particularly where species repopulate areas from which they have long been extirpated. We investigated the movement and habitat use by 2 semi-aquatic carnivores (Australian fur seals Arctocephalus pusillus doriferus and New Zealand fur seals A. forsteri) at the northern end of their distributions in Australia, where after a long absence both are recolonising their historic range. We also assessed male fur seal habitat use overlap with terrestrial and marine protected areas (PAs). While at the margin of the range during winter and early spring, the males remained inshore close to terrestrial sites and where interactions with humans often occur. From early spring, the males from the range margin showed uniform movement toward colonies in the core of the species’ range prior to their breeding seasons. This contrasts with males tracked from the core of the species’ range that returned periodically to colonies during the year, and highlights the importance of range-wide monitoring of a species to inform conservation planning. Habitat use by some males included over 90% of a marine PA at the margin of the species’ range. Most terrestrial haul-outs used were within terrestrial PAs, while sites not protected were on the margin of the range. Despite wide-ranging habits, their dependence on coastal sites, where human access and activities can be regulated and more readily enforced, suggests that terrestrial and marine PAs will continue to play an important role in managing the recovery of these fur seals.
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Affiliation(s)
- M Salton
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
- Australian Antarctic Division, Department of Agriculture, Water and Environment, Kingston, Tasmania 7050, Australia
| | - M Carr
- Department of Primary Industries, Jervis Bay Marine Park, New South Wales 2540, Australia
- Biodiversity Conservation Trust, Coffs Harbour, New South Wales 2450, Australia
| | - LM Tarjan
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California 95064, USA
- San Francisco Bay Bird Observatory, 524 Valley Way, Milpitas, California 95035, USA
| | - J Clarke
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
| | - R Kirkwood
- Research Department, Phillip Island Nature Parks, Cowes, Victoria 3922, Australia
- SARDI Aquatic Sciences, West Beach, South Australia 5024, Australia
| | - D Slip
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
- Taronga Conservation Society Australia, Mosman, New South Wales 2088, Australia
| | - R Harcourt
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia
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4
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Akomeah E, Morales-Marın LA, Carr M, Sadeghian A, Lindenschmidt KE. The impacts of changing climate and streamflow on nutrient speciation in a large Prairie reservoir. J Environ Manage 2021; 288:112262. [PMID: 33756384 DOI: 10.1016/j.jenvman.2021.112262] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 01/18/2021] [Accepted: 02/22/2021] [Indexed: 06/12/2023]
Abstract
Climate mediated warming water temperature, drought and extreme flooding are projected to shift the phenology of nutrients in receiving lakes and reservoirs further intensifying eutrophication and algal blooms, especially in temperate reservoirs. An emerging issue in reservoir management is the prediction of climate change impacts, a necessity for sound decision making and sustainable management. Lake Diefenbaker is a large multipurpose reservoir in the Canadian Prairies. In this study, the impact of climate change on nutrient speciation in Lake Diefenbaker is examined using loosely linked SpAtially Referenced Regression On Watershed attributes (SPARROW) and CE-QUAL-W2 models. Two climate mediated scenarios, RCP 8.5 representing the most extreme climate change, and climate induced streamflow were modelled. Nutrient levels are anticipated to double under the climate change and streamflow scenarios. Winter and spring were identified as hot moments for nitrogen pollution with a plausible saturation of nitrous oxides in the future. Of concern is a plausible recycling of nitrate through dissimilatory nitrate reduction to ammonium. Summer and fall on the other hand represent the period for phosphorus enrichment and internal loading with a probable succession of cyanobacteria in the summer.
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Affiliation(s)
- E Akomeah
- University of Saskatchewan, 11 Innovation Boulevard, Saskatoon, SK, S7N 3H5, Canada.
| | - L A Morales-Marın
- Canadian Centre for Meteorological and Environmental Prediction, Environment and Climate Change Canada, 2121 TransCanada Highway, Dorval, QC, H9P 1J3, Canada
| | - M Carr
- Minnow Environmental Inc., 2750 Faithfull Ave # 110, Saskatoon, SK, S7K 6M6, Canada
| | - A Sadeghian
- Golder Associates, 700 2 St SW #2800, Calgary, AB, T2P 2W2, Canada
| | - K E Lindenschmidt
- University of Saskatchewan, 11 Innovation Boulevard, Saskatoon, SK, S7N 3H5, Canada
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5
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Moscheni M, Carr M, Dulla S, Maviglia F, Meakins A, Nallo G, Subba F, Zanino R. Radiative heat load distribution on the EU-DEMO first wall due to mitigated disruptions. Nuclear Materials and Energy 2020. [DOI: 10.1016/j.nme.2020.100824] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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6
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Beas-Luna R, Micheli F, Woodson CB, Carr M, Malone D, Torre J, Boch C, Caselle JE, Edwards M, Freiwald J, Hamilton SL, Hernandez A, Konar B, Kroeker KJ, Lorda J, Montaño-Moctezuma G, Torres-Moye G. Geographic variation in responses of kelp forest communities of the California Current to recent climatic changes. Glob Chang Biol 2020; 26:6457-6473. [PMID: 32902090 DOI: 10.1111/gcb.15273] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 05/06/2020] [Accepted: 06/18/2020] [Indexed: 06/11/2023]
Abstract
The changing global climate is having profound effects on coastal marine ecosystems around the world. Structure, functioning, and resilience, however, can vary geographically, depending on species composition, local oceanographic forcing, and other pressures from human activities and use. Understanding ecological responses to environmental change and predicting changes in the structure and functioning of whole ecosystems require large-scale, long-term studies, yet most studies trade spatial extent for temporal duration. We address this shortfall by integrating multiple long-term kelp forest monitoring datasets to evaluate biogeographic patterns and rates of change of key functional groups (FG) along the west coast of North America. Analysis of data from 469 sites spanning Alaska, USA, to Baja California, Mexico, and 373 species (assigned to 18 FG) reveals regional variation in responses to both long-term (2006-2016) change and a recent marine heatwave (2014-2016) associated with two atmospheric and oceanographic anomalies, the "Blob" and extreme El Niño Southern Oscillation (ENSO). Canopy-forming kelps appeared most sensitive to warming throughout their range. Other FGs varied in their responses among trophic levels, ecoregions, and in their sensitivity to heatwaves. Changes in community structure were most evident within the southern and northern California ecoregions, while communities in the center of the range were more resilient. We report a poleward shift in abundance of some key FGs. These results reveal major, ongoing region-wide changes in productive coastal marine ecosystems in response to large-scale climate variability, and the potential loss of foundation species. In particular, our results suggest that coastal communities that are dependent on kelp forests will be more impacted in the southern portion of the California Current region, highlighting the urgency of implementing adaptive strategies to sustain livelihoods and ensure food security. The results also highlight the value of multiregional integration and coordination of monitoring programs for improving our understanding of marine ecosystems, with the goal of informing policy and resource management in the future.
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Affiliation(s)
| | - Fiorenza Micheli
- Hopkins Marine Station, Stanford University, Pacific Grove, CA, USA
- Stanford Center for Ocean Solutions, Stanford University, Pacific Grove, CA, USA
| | - C Brock Woodson
- College of Engineering, University of Georgia, Athens, GA, USA
| | - Mark Carr
- University of California, Santa Cruz, CA, USA
| | - Dan Malone
- University of California, Santa Cruz, CA, USA
| | - Jorge Torre
- Comunidad y Biodiversidad A.C., La Paz, Mexico
| | - Charles Boch
- Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA
- Southwest Fisheries Science Center, NOAA, San Diego, CA, USA
| | - Jennifer E Caselle
- Marine Science Institute, University of California, Santa Barbara, CA, USA
| | | | - Jan Freiwald
- University of California, Santa Cruz, CA, USA
- Reef Check California, Marina del Rey, CA, USA
| | - Scott L Hamilton
- Moss Landing Marine Laboratories, San Jose State University, Moss Landing, CA, USA
| | | | | | | | - Julio Lorda
- Universidad Autónoma de Baja California, Ensenada, Mexico
- Tijuana River National Estuarine Research Reserve, Imperial Beach, CA, USA
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7
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Lin J, Kurbedin J, Khordipour E, Haines L, Nguyen A, Grbic M, Hoffman T, Carr M, Gupta S, Likourezos A, Aghera A. 348 Emergency Physician Learning Curve on Transesophageal Echocardiography Simulator. Ann Emerg Med 2020. [DOI: 10.1016/j.annemergmed.2020.09.363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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8
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Carr M, Stocks A, Mallett R, Konkoly K, Freegard M, Hicks A, Crawford M, Pigeon W, Schredl M, Bradshaw C. 0112 Lucid Dreaming Associated with Positive Waking Mood. Sleep 2020. [DOI: 10.1093/sleep/zsaa056.110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Introduction
Lucid dreaming (being aware that one is dreaming) is typically a positive experience that may enhance positive mood even after waking. There is concern, however, that lucid dreaming may interfere with sleep quality. In the current experiment, participants practiced common lucid dream induction techniques over the course of a week, and kept a daily sleep and dream diary. The study objective was to assess relationships between dream lucidity and subjective sleep quality, dream emotional content, and subsequent waking mood.
Methods
There were 32 participants aged 19–33 in this open label, single arm study (mean=22.63±3.48; 6 males, 24 females). All participants completed a sleep and dream diary for 7 days that included scaled items (1–7 scale) concerning subjective sleep quality, negative and positive emotional intensity of a dream (if recalled). Participants also completed a 19-item lucidity questionnaire, and the Positive and Negative Affect Schedule. Average scores for the week were computed for all measures and Pearson’s correlations conducted between lucidity and all other measures. Participants with no dream recall (n=5) were excluded. Within-subjects analyses were undertaken by selecting each participant’s highest and lowest lucidity night (n=22; 5 participants with only minimum lucidity excluded).
Results
Positive correlations were found between lucidity and dream positive emotion (r=.490, n=27, p=.009) and positive waking mood (r=.638, n=27, p<.001); there were no other significant correlations (all p>.1). Higher lucidity was associated with more positive dream content (t(21)= -3.214, p=.004) and positive waking mood (t(25)=-4.568, p<.001); no other significant differences were observed.
Conclusion
These data indicate that lucidity is associated with positive dreams and waking mood, with no detriment to self-reported sleep quality. The findings provide preliminary support of lucid dreaming as an intervention to improve wellbeing and mood in the short term.
Support
N/A
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Affiliation(s)
- M Carr
- University of Rochester, Rochester, NY
| | - A Stocks
- Swansea University, Swansea, UNITED KINGDOM
| | - R Mallett
- University of Texas at Austin, Austin, TX
| | - K Konkoly
- Northwestern University, Evanston, IL
| | - M Freegard
- Swansea University, Swansea, UNITED KINGDOM
| | - A Hicks
- Swansea University, Swansea, UNITED KINGDOM
| | - M Crawford
- Swansea University, Swansea, UNITED KINGDOM
| | - W Pigeon
- University of Rochester, Rochester, NY
| | - M Schredl
- Central Institute of Mental Health, Mannehim, GERMANY
| | - C Bradshaw
- Swansea University, Swansea, UNITED KINGDOM
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9
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Abstract
Abstract
Introduction
THC (the main psychoactive component of cannabis) has been shown to suppress REM sleep and decrease sleep latency, although this is not consistently replicated. Increased dream vividness is reported to occur in abstinent cannabis users, although dream quality in active users is unstudied. The current study aimed to assess the effects of cannabis use compared to non-use on objective sleep measures, dream reports, and self-reported anxiety, memory, and sleep quality. To collect objective sleep data we piloted the use of a portable PSG headband that allows EEG and EOG recording at home.
Methods
12 regular cannabis users (> 3 days per week) & 9 non-users (aged 19 - 27; 43% female) participated; participants used no other drugs or alcohol on study nights. The most common form of cannabis use was smoking in joints with tobacco (range = 1 - 15 per day). Participants wore the PSG headband (the Hypnodyne ZMax) over 2 nights at home (2nd night used for analysis), and were instructed to awaken 4 times across the night to fill out brief dream reports. Objective sleep measures included TST, Sleep latency, REM latency, and REM percent. Self-report measures included the Pittsburgh Sleep Quality Index, Everyday Memory Questionnaire, and State-Trait Anxiety Index. Dream measures included recall frequency, word length, and three attributes rated on a 1–7 Likert scale - sensory vividness, emotional intensity, and bizarreness.
Results
There were no group differences on self-report measures. Cannabis users showed longer REM latency (t=2.23, p=.04) and lower REM% (U=22, p=.02); there were no other objective group differences. Cannabis users reported higher bizarreness in their dreams (t=2.07, p=.05); there were no other dream differences.
Conclusion
The study presents a novel approach to assess sleep at home and cannabis use. Significant differences emerged between users and non-users on REM latency, REM%, and dream bizarreness.
Support
N/A
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Affiliation(s)
- M Carr
- University of Rochester, Rochester, NY
| | - R Borcsok
- Swansea University, Swansea, UNITED KINGDOM
| | - M Taylor
- Swansea University, Swansea, UNITED KINGDOM
| | - S Segust
- Swansea University, Swansea, UNITED KINGDOM
| | - W Pigeon
- University of Rochester, Rochester, NY
| | - C Bradshaw
- Swansea University, Swansea, UNITED KINGDOM
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10
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Crawford M, Salanitro M, Vallières A, Carr M, Rees H, Norris E, Bradshaw C, Blagrove M. Both good and poor sleepers overestimate wakefulness after waking from a nap: impact of sleep inertia. Sleep Med 2019. [DOI: 10.1016/j.sleep.2019.11.224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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11
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Crozier LG, McClure MM, Beechie T, Bograd SJ, Boughton DA, Carr M, Cooney TD, Dunham JB, Greene CM, Haltuch MA, Hazen EL, Holzer DM, Huff DD, Johnson RC, Jordan CE, Kaplan IC, Lindley ST, Mantua NJ, Moyle PB, Myers JM, Nelson MW, Spence BC, Weitkamp LA, Williams TH, Willis-Norton E. Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem. PLoS One 2019; 14:e0217711. [PMID: 31339895 PMCID: PMC6655584 DOI: 10.1371/journal.pone.0217711] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Accepted: 05/16/2019] [Indexed: 12/25/2022] Open
Abstract
Major ecological realignments are already occurring in response to climate change. To be successful, conservation strategies now need to account for geographical patterns in traits sensitive to climate change, as well as climate threats to species-level diversity. As part of an effort to provide such information, we conducted a climate vulnerability assessment that included all anadromous Pacific salmon and steelhead (Oncorhynchus spp.) population units listed under the U.S. Endangered Species Act. Using an expert-based scoring system, we ranked 20 attributes for the 28 listed units and 5 additional units. Attributes captured biological sensitivity, or the strength of linkages between each listing unit and the present climate; climate exposure, or the magnitude of projected change in local environmental conditions; and adaptive capacity, or the ability to modify phenotypes to cope with new climatic conditions. Each listing unit was then assigned one of four vulnerability categories. Units ranked most vulnerable overall were Chinook (O. tshawytscha) in the California Central Valley, coho (O. kisutch) in California and southern Oregon, sockeye (O. nerka) in the Snake River Basin, and spring-run Chinook in the interior Columbia and Willamette River Basins. We identified units with similar vulnerability profiles using a hierarchical cluster analysis. Life history characteristics, especially freshwater and estuary residence times, interplayed with gradations in exposure from south to north and from coastal to interior regions to generate landscape-level patterns within each species. Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification, but other aspects of exposure peaked in particular regions. Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids.
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Affiliation(s)
- Lisa G. Crozier
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
- * E-mail:
| | - Michelle M. McClure
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Tim Beechie
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Steven J. Bograd
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Monterey, California, United States of America
| | - David A. Boughton
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Mark Carr
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, United States of America
| | - Thomas D. Cooney
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Jason B. Dunham
- Forest & Rangeland Ecosystem Science Center, U.S. Geological Survey, Corvallis, Oregon, United States of America
| | - Correigh M. Greene
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Melissa A. Haltuch
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Elliott L. Hazen
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Monterey, California, United States of America
| | - Damon M. Holzer
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - David D. Huff
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Rachel C. Johnson
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
- Center for Watershed Sciences, University of California, Davis, California, United States of America
| | - Chris E. Jordan
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Isaac C. Kaplan
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Steven T. Lindley
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Nathan J. Mantua
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Peter B. Moyle
- Department of Wildlife, Fish and Conservation Biology, University of California, Davis, California, United States of America
| | - James M. Myers
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Mark W. Nelson
- ECS Federal, Inc. Under Contract to Office of Sustainable Fisheries, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Silver Spring, Maryland, United States of America
| | - Brian C. Spence
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Laurie A. Weitkamp
- Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, United States of America
| | - Thomas H. Williams
- Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Santa Cruz, California, United States of America
| | - Ellen Willis-Norton
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, California, United States of America
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12
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Carr M, Meakins A, Silburn SA, Karhunen J, Bernert M, Bowman C, Callarelli A, Carvalho P, Giroud C, Harrison JR, Henderson SS, Huber A, Lipschultz B, Lunt T, Moulton D, Reimold F. Physically principled reflection models applied to filtered camera imaging inversions in metal walled fusion machines. Rev Sci Instrum 2019; 90:043504. [PMID: 31043003 DOI: 10.1063/1.5092781] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 03/29/2019] [Indexed: 06/09/2023]
Abstract
Ray-tracing techniques are applied to filtered divertor imaging, a diagnostic that has long suffered from artifacts due to the polluting effect of reflected light in metal walled fusion machines. Physically realistic surface reflections were modeled using a Cook-Torrance micro-facet bi-directional reflection distribution function applied to a high resolution mesh of the vessel geometry. In the absence of gonioreflectometer measurements, a technique was developed to fit the free parameters of the Cook-Torrance model against images of the JET in-vessel light sources. By coupling this model with high fidelity plasma fluid simulations, photo-realistic renderings of a number of tokamak plasma emission scenarios were generated. Finally, a sensitivity matrix describing the optical coupling of a JET divertor camera and the emission profile of the plasma was obtained, including full reflection effects. These matrices are used to perform inversions on measured data and shown to reduce the level of artifacts in inverted emission profiles.
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Affiliation(s)
- M Carr
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - A Meakins
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - S A Silburn
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - J Karhunen
- Department of Applied Physics, Aalto University School of Science, P.O. Box 11100, FI-00076 Aalto, Finland
| | - M Bernert
- Max-Planck-Institut für Plasmaphysik, 85748 Garching, Germany
| | - C Bowman
- Department of Physics, York Plasma Institute, University of York, Heslington, York, United Kingdom
| | - A Callarelli
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - P Carvalho
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - C Giroud
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - J R Harrison
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - S S Henderson
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - A Huber
- Forschungszentrum Jülich GmbH, Institut für Energie-und Klimaforschung - Plasmaphysik, 52425 Jülich, Germany
| | - B Lipschultz
- Department of Physics, York Plasma Institute, University of York, Heslington, York, United Kingdom
| | - T Lunt
- Max-Planck-Institut für Plasmaphysik, 85748 Garching, Germany
| | - D Moulton
- UKAEA/CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - F Reimold
- Max-Planck-Institut für Plasmaphysik, Greifswald, Germany
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13
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Henderson S, Bernert M, Brezinsek S, Carr M, Cavedon M, Dux R, Gahle D, Harrison J, Kallenbach A, Lipschultz B, Lomanowski B, Meigs A, O’Mullane M, Reimold F, Reinke M, Wiesen S. An assessment of nitrogen concentrations from spectroscopic measurements in the JET and ASDEX upgrade divertor. Nuclear Materials and Energy 2019. [DOI: 10.1016/j.nme.2018.12.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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14
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Carr M, Meakins A, Bernert M, David P, Giroud C, Harrison J, Henderson S, Lipschultz B, Reimold F. Description of complex viewing geometries of fusion tomography diagnostics by ray-tracing. Rev Sci Instrum 2018; 89:083506. [PMID: 30184695 DOI: 10.1063/1.5031087] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Accepted: 07/24/2018] [Indexed: 06/08/2023]
Abstract
Ray-tracing techniques are applied to bolometry, a diagnostic where the finite collection volume is particularly sensitive to the machine and detector configuration. A technique is presented that can handle arbitrarily complex aperture and collimator geometries, neglecting reflection effects. Sight lines from the ASDEX Upgrade bolometer foils were ray-traced with a path tracing algorithm, where the optical path is represented by a statistical bundle of ray paths connecting the foil surface with the slit geometry. By using the full 3D machine model for the detector box and first wall, effects such as occlusion and vignetting were included in the calculation of the bolometer's étendue. Inversion matrices calculated with the ray-tracing technique were compared with the more conventional single-ray approach and shown to be naturally more constrained, requiring less regularisation. The two models were tested on a sample radiation scenario, and the common single-ray approximation is shown to be insufficient. These results are particularly relevant for the divertor where strong emission gradients may be present. The technique developed generalises well to arbitrarily complex viewing geometries and collimators, opening up a new design space for bolometer configurations that might not normally have been considered.
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Affiliation(s)
- M Carr
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - A Meakins
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - M Bernert
- Max-Planck-Institut für Plasmaphysik, 85748 Garching, Germany
| | - P David
- Max-Planck-Institut für Plasmaphysik, 85748 Garching, Germany
| | - C Giroud
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - J Harrison
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - S Henderson
- CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB, United Kingdom
| | - B Lipschultz
- Department of Physics, York Plasma Institute, University of York, Heslington, York, United Kingdom
| | - F Reimold
- Max-Planck-Institut für Plasmaphysik, Greifswald, Germany
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15
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Abstract
There is a pressing clinical need to develop accurate, efficient non-contrast magnetic resonance angiography (NC-MRA) techniques. Our efforts in the field have focused on a novel non-subtractive technique called quiescent-interval slice-selective (QISS) MRA. Compared with other NC-MRA techniques, QISS has the advantage of being more accurate while enabling a simpler and more efficient workflow. The original implementation, which uses electrocardiogram (ECG) gating and a Cartesian k-space trajectory, is a reliable technique for the evaluation of peripheral arterial disease (PAD). Recent advances in QISS technology include the use of a radial k-space trajectory, which facilitates rapid imaging of the coronary, renal, and pulmonary arteries as well as other vascular beds, and ungated ("UnQISS") acquisitions for PAD.
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Affiliation(s)
- R R Edelman
- Department of Radiology, Northwestern Memorial Hospital, Chicago, IL, USA; Department of Radiology, Northshore University Health System, Evanston, IL, USA.
| | - M Carr
- Department of Radiology, Northshore University Health System, Evanston, IL, USA
| | - I Koktzoglou
- Department of Radiology, Northshore University Health System, Evanston, IL, USA; Department of Radiology, University of Chicago Pritzker School of Medicine, Chicago, IL, USA
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16
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Steeg S, Emsley R, Carr M, Cooper J, Kapur N. Routine hospital management of self-harm and risk of further self-harm: propensity score analysis using record-based cohort data. Psychol Med 2018; 48:315-326. [PMID: 28637535 DOI: 10.1017/s0033291717001702] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
BACKGROUND The care received by people presenting to hospital following self-harm varies and it is unclear how different types of treatment affect risk of further self-harm. METHOD Observational cohort data from the Manchester Self-Harm Project, UK, included 16 456 individuals presenting to an Emergency Department with self-harm between 2003 and 2011. Individuals were followed up for 12 months. We also used data from a smaller cohort of individuals presenting to 31 hospitals in England during a 3-month period in 2010/2011, followed up for 6 months. Propensity score (PS) methods were used to address observed confounding. Missing data were imputed using multiple imputation. RESULTS Following PS stratification, those who received a psychosocial assessment had a lower risk of repeat hospital attendance for self-harm than those who were not assessed [RR 0.87, 95% confidence interval (CI) 0.80-0.95]. The risk was reduced most among people less likely to be assessed. Following PS matching, we found no associations between risks of repeat self-harm and admission to a medical bed, referral to outpatient psychiatry or admission to a psychiatric bed. We did not find a relationship between psychosocial assessment and repeat self-harm in the 31 centre cohort. CONCLUSIONS This study shows the potential value of using novel statistical techniques in large mental health datasets to estimate treatment effects. We found that specialist psychosocial assessment may reduce the risk of repeat self-harm. This type of routine care should be provided for all individuals who present to hospital after self-harm, regardless of perceived risk.
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Affiliation(s)
- S Steeg
- Division of Psychology and Mental Health,Centre for Suicide Prevention, University of Manchester, Manchester Academic Health Science Centre,Manchester,UK
| | - R Emsley
- Centre for Biostatistics, School of Health Sciences, University of Manchester, Manchester Academic Health Science Centre,Manchester,UK
| | - M Carr
- Division of Psychology and Mental Health,Centre for Suicide Prevention, University of Manchester, Manchester Academic Health Science Centre,Manchester,UK
| | - J Cooper
- Division of Psychology and Mental Health,Centre for Suicide Prevention, University of Manchester, Manchester Academic Health Science Centre,Manchester,UK
| | - N Kapur
- Division of Psychology and Mental Health,Centre for Suicide Prevention, University of Manchester, Manchester Academic Health Science Centre,Manchester,UK
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Marquis L, Julien S, Blanchette-Carrière C, Baril A, Desjardins M, Carr M, Paquette T, Soucy J, Montplaisir J, Nielsen T. 0732 NIGHTMARE DISTRESS IS NEGATIVELY CORRELATED WITH REGIONAL CEREBRAL BLOOD FLOW IN FRONTAL AREAS DURING AN IAPS PICTURE-VIEWING TASK. Sleep 2017. [DOI: 10.1093/sleepj/zsx050.731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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18
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Carr M, Shaw C, Nam K, Stanczak M, Lyshchik A, Forsberg F, Liu J, Lallas C, Trabulsi E, Eisenbrey J. Monitoring postablation renal cellular carcinoma using 3D contrast enhanced ultrasound and time intensity curve analysis: preliminary results. J Vasc Interv Radiol 2017. [DOI: 10.1016/j.jvir.2016.12.617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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19
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Bonello B, Carr M, Iriart X, Derrick G, Christov G, Kostolny M, Marek J. Long-term functional and myocardial assessment in patients with critical aortic valve stenosis. Archives of Cardiovascular Diseases Supplements 2017. [DOI: 10.1016/s1878-6480(17)30331-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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20
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Mas-Stachurska A, Slieker MG, Rosner A, Bonello B, Cieplucha A, Almeida Morais L, Morillas Climent H, Nogueira MA, Guasch E, Sitges M, Batlle M, Meirelles T, Castillo N, Rudenick P, Bijnens B, Egea G, Meza JM, Mccrindle BW, Karamlou T, Tchervenkov CI, Jacobs ML, Decampli WM, Burch PT, Mertens L, Khalapyan T, Dalen H, Mc Elhinney D, Chen S, Haeffele C, Fernandes S, Bijnens B, Friedberg M, Lui GK, Carr M, Iriart X, Ciliberti P, Christov G, Sullivan I, Derrick G, Kostolny M, Tsang V, Bull C, Giardini A, Marek J, Trojnarska O, Pyda M, Kociemba A, Lanocha M, Barczynski M, Kramer L, Grajek S, Abreu A, Agapito A, De Sousa L, Oliveira JA, Viveiros Monteiro A, Modas Daniel P, Antonio M, Jalles Tavares N, Cruz-Ferreira R, Osa Saez A, Cano Perez O, Domingo Valero D, Igual Munoz B, Martinez-Dolz L, Serrano Martinez F, Montero Argudo A, Plaza Lopez D, Rueda Soriano J, Branco LM, Timoteo AT, Oliveira M, Agapito A, Portugal G, Sousa L, Oliveira JA, Cruz Ferreira R. Rapid Fire Abstract: Congenital heart disease470Impact of training on aortic and cardiac remodelling in a murine model of Marfan syndrome: an echocardiographic study471Pre-intervention morphologic and functional echocardiographic characteristics of 651 neonates with critical left ventricular outflow tract obstruction472Ventricular geometry and function in adult patients with Fontan surgery473Long term functional and myocardial assessment of patients with critical aortic valve stenosis474Late gadolinium enhancement and exercise capacity in adults with Ebstein's anomaly475Exercise echocardiography value in the evaluation of operated aortic coarctation patients476Functional evolution of the right ventricle after pulmonary valve replacement due to significant regurgitation. Implications in the surgical moment decision477Independent predictors of arrhythmias in adult patients with surgically corrected tetralogy of fallot: role of two-dimensional and speckle-tracking echocardiography. Eur Heart J Cardiovasc Imaging 2016. [DOI: 10.1093/ehjci/jew245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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21
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Carr M. Experiences of improving musculoskeletal (MSK) clinical standards: improved patient outcomes and high staff engagement. Physiotherapy 2016. [DOI: 10.1016/j.physio.2016.10.155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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22
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Strom T, Carr M, Zager J, Smith F, Cruse C, Messina J, Padhya T, Rao N, Sondak V, Harrison L, Trotti A, Caudell J. Radiation Therapy Influences Outcomes in Merkel Cell Carcinoma. Int J Radiat Oncol Biol Phys 2015. [DOI: 10.1016/j.ijrobp.2015.07.2158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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23
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Young M, Carr M. Assessment of habitat representation across a network of marine protected areas with implications for the spatial design of monitoring. PLoS One 2015; 10:e0116200. [PMID: 25760858 PMCID: PMC4356544 DOI: 10.1371/journal.pone.0116200] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Accepted: 12/07/2014] [Indexed: 11/19/2022] Open
Abstract
Networks of marine protected areas (MPAs) are being adopted globally to protect ecosystems and supplement fisheries management. The state of California recently implemented a coast-wide network of MPAs, a statewide seafloor mapping program, and ecological characterizations of species and ecosystems targeted for protection by the network. The main goals of this study were to use these data to evaluate how well seafloor features, as proxies for habitats, are represented and replicated across an MPA network and how well ecological surveys representatively sampled fish habitats inside MPAs and adjacent reference sites. Seafloor data were classified into broad substrate categories (rock and sediment) and finer scale geomorphic classifications standard to marine classification schemes using surface analyses (slope, ruggedness, etc.) done on the digital elevation model derived from multibeam bathymetry data. These classifications were then used to evaluate the representation and replication of seafloor structure within the MPAs and across the ecological surveys. Both the broad substrate categories and the finer scale geomorphic features were proportionately represented for many of the classes with deviations of 1-6% and 0-7%, respectively. Within MPAs, however, representation of seafloor features differed markedly from original estimates, with differences ranging up to 28%. Seafloor structure in the biological monitoring design had mismatches between sampling in the MPAs and their corresponding reference sites and some seafloor structure classes were missed entirely. The geomorphic variables derived from multibeam bathymetry data for these analyses are known determinants of the distribution and abundance of marine species and for coastal marine biodiversity. Thus, analyses like those performed in this study can be a valuable initial method of evaluating and predicting the conservation value of MPAs across a regional network.
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Affiliation(s)
- Mary Young
- Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
- Centre for Integrative Ecology, Deakin University, Warrnambool, Victoria, Australia
| | - Mark Carr
- Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
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24
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Badrick EL, Sperrin M, Carr M, Buchan IE, Renehan AG. Bias in the estimation of adult body mass index from general practice records. Eur J Public Health 2014. [DOI: 10.1093/eurpub/cku163.080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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25
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Hassan J, Carr M, Connell J, De Gascun C. Letter to the Editor: Smoking and older age associated with mumps in an outbreak in a group of highly-vaccinated individuals attending a youth club party, the Netherlands, 2012. Euro Surveill 2014; 19. [DOI: 10.2807/1560-7917.es2014.19.20.20807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Affiliation(s)
- J Hassan
- National Virus Reference Laboratory, University College Dublin, Ireland
| | - M Carr
- National Virus Reference Laboratory, University College Dublin, Ireland
| | - J Connell
- National Virus Reference Laboratory, University College Dublin, Ireland
| | - C De Gascun
- National Virus Reference Laboratory, University College Dublin, Ireland
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26
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Stankovic Z, Semaan E, Markl M, Carr M, Wasielewski M, Lewandowski R, Salem R, Carr J, Collins J. Initiale Ergebnisse einer quantitative Beurteilung der Leberhaemodynamik mittels k-t GRAPPA beschleunigten 4D flow MRT bei Leberzirrhosepatienten. ROFO-FORTSCHR RONTG 2014. [DOI: 10.1055/s-0034-1372838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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27
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Topaz O, Morris C, Minisi A, Mohanty P, Carr M. Enhancement of t-PA Induced Fibrinolysis with Laser Energy: In-Vitro Observations. Lasers Med Sci 2014; 14:123-8. [DOI: 10.1007/s101030050033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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28
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Shafer F, Smith L, Vendetti N, Rendo P, Carr M. Lack of seasonal variation in bleeding and patient-assessed pain patterns in patients with haemophilia B receiving on-demand therapy. Haemophilia 2013; 20:349-53. [PMID: 24286226 PMCID: PMC4216408 DOI: 10.1111/hae.12305] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/07/2013] [Indexed: 11/28/2022]
Abstract
Spontaneous haemorrhage in patients with haemophilia is generally considered to occur randomly and without a predictable temporal or seasonal pattern; however, there is a lack of evidence in the literature on the effects of weather, temperature and atmosphere on bleeding episodes. This post hoc analysis of a multicentre, open-label crossover study examined the influence of seasonality on bleeding frequency and patient-assessed pain in patients with moderately severe and severe (FIX C ≤ 2%) haemophilia B. Fifty patients were enrolled and treated on-demand for 16 weeks; 47 were subsequently randomized to one of two prophylactic regimens (nonacog alfa 100 IU kg−1 once weekly or 50 IU kg−1 twice weekly) for 16 weeks. Patients then underwent an 8-week washout period of on-demand therapy before being crossed over to the other prophylactic regimen for 16 weeks. Bleeding episodes during the on-demand treatment periods were analysed. To assess for temporal trends, data were graphed as scatter plots. The primary end point was the annualized bleeding rate (ABR). Additional measures included raw and median pain scores during every joint bleeding event (spontaneous or traumatic), with pain scored using the Brief Pain Inventory (0 = ‘no pain’ to 10 = ‘pain as bad as you can imagine’). The observed ABRs during the on-demand periods showed no distinguishable trend over time. Analysis of pain associated with joint bleeding episodes also did not demonstrate any discernible temporal trend. No apparent seasonal variation in bleeding pattern or patient-reported pain was observed in this analysis of patients with haemophilia B.
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Affiliation(s)
- F Shafer
- Pfizer Inc, Collegeville, PA, USA
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29
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Semaan E, Spottiswoode B, Freed B, Carr M, Wasielewski M, Fortney-Campione K, Shah S, Carr J, Markl M, Collins J. 1057High-resolution faster modified look-locker inversion
recovery (fast-MOLLI) for RV extracellular volume fraction at 3T: A feasibility
study. Eur Heart J Cardiovasc Imaging 2013. [DOI: 10.1093/ehjci/jet070k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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30
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Tyler A, DeVier M, Carpenter C, Carr M, Trabue C. Successful treatment of pulmonary blastomycosis in a pregnant woman using itraconazole. Ann Pharmacother 2013; 47:425-6. [PMID: 23482735 DOI: 10.1345/aph.1r679] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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31
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Carr M, Ravi V, Reddy GS, Veranna D. Machine Learning Techniques Applied to Profile Mobile Banking Users in India. International Journal of Information Systems in the Service Sector 2013. [DOI: 10.4018/jisss.2013010105] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This paper profiles mobile banking users using machine learning techniques viz. Decision Tree, Logistic Regression, Multilayer Perceptron, and SVM to test a research model with fourteen independent variables and a dependent variable (adoption). A survey was conducted and the results were analysed using these techniques. Using Decision Trees the profile of the mobile banking adopter’s profile was identified. Comparing different machine learning techniques it was found that Decision Trees outperformed the Logistic Regression and Multilayer Perceptron and SVM. Out of all the techniques, Decision Tree is recommended for profiling studies because apart from obtaining high accurate results, it also yields ‘if–then’ classification rules. The classification rules provided here can be used to target potential customers to adopt mobile banking by offering them appropriate incentives.
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Affiliation(s)
- M. Carr
- Institute for Development and Research in Banking Technology (IDRBT), Hyderabad, India
| | - V. Ravi
- Institute for Development and Research in Banking Technology (IDRBT), Hyderabad, India
| | - G. Sridharan Reddy
- Institute for Development and Research in Banking Technology (IDRBT), Hyderabad, India
| | - D. Veranna
- Institute for Development and Research in Banking Technology (IDRBT), Hyderabad, India
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32
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Roche SE, Wicks R, Garner MG, East IJ, Paskin R, Moloney BJ, Carr M, Kirkland P. Descriptive overview of the 2011 epidemic of arboviral disease in horses in Australia. Aust Vet J 2012; 91:5-13. [DOI: 10.1111/avj.12018] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/18/2012] [Indexed: 11/28/2022]
Affiliation(s)
- SE Roche
- Animal Health Policy Branch; Department of Agriculture; Fisheries and Forestry; Canberra; Australian Capital Territory; Australia
| | - R Wicks
- Animal Health Policy Branch; Department of Agriculture; Fisheries and Forestry; Canberra; Australian Capital Territory; Australia
| | - MG Garner
- Animal Health Policy Branch; Department of Agriculture; Fisheries and Forestry; Canberra; Australian Capital Territory; Australia
| | - IJ East
- Animal Health Policy Branch; Department of Agriculture; Fisheries and Forestry; Canberra; Australian Capital Territory; Australia
| | - R Paskin
- Chief Veterinary Officer's Unit; Department of Primary Industries; Attwood; Victoria; Australia
| | - BJ Moloney
- Animal Biosecurity; NSW Department of Primary Industries; Orange; New South Wales; Australia
| | - M Carr
- Biosecurity SA; Department of Primary Industries and Regions; Glenside; South Australia; Australia
| | - P Kirkland
- Elizabeth Macarthur Agricultural Institute; NSW Department of Primary Industries; Menangle; New South Wales; Australia
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33
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Abstract
Lemierre's syndrome is usually reported in the young and in fit individuals. We report a case of an 81-year-old woman who presented with thrombophlebitis of the internal jugular vein with a pulmonary embolism.
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34
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Kinsella K, Kelly SB, DeGascun CF, Carr M, Duggan M, Hutchinson M, Tubridy N, McGuigan C. 0854 The sensitivity of JC virus DNA detection vs JC virus antibody testing in a natalizumab-treated group of relapsing MS patients. J Neurol Neurosurg Psychiatry 2012. [DOI: 10.1136/jnnp-2011-301993.35] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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35
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Fernandes AR, Tlustos C, Rose M, Smith F, Carr M, Panton S. Polychlorinated naphthalenes (PCNs) in Irish foods: Occurrence and human dietary exposure. Chemosphere 2011; 85:322-328. [PMID: 21783225 DOI: 10.1016/j.chemosphere.2011.06.093] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2010] [Revised: 05/11/2011] [Accepted: 06/23/2011] [Indexed: 05/31/2023]
Abstract
The concentrations of selected polychlorinated naphthalene (PCN) congeners (PCNs 52, 53, 66/67, 68, 69, 71/72, 73, 74 and 75) were determined in 100 commonly consumed foods, in the first study on occurrence of these contaminants in the Republic of Ireland. Congener selection was based on current knowledge on PCN occurrence and toxicology, and the availability of reliable reference standards. The determinations were carried out using validated analytical methodology based on 13C10 labelled internal standardisation and measurement by HRGC-HRMS. The results showed PCN occurrence in the majority of studied foods--milk, fish, dairy and meat products, eggs, animal fat, shellfish, offal, vegetables, cereal products, etc. ranging from 0.09 ng kg(-1) whole weight for milk to 59.3 ng kg(-1) whole weight for fish, for the sum of the measured PCNs. The most frequently detected congeners were PCNs 66/67, PCN 52, and PCN 73. The highest concentrations were observed in fish, which generally showed congener profiles that reflect some commercial mixtures. The data compares well with other recently reported data for Western Europe. The dioxin-like toxicity (PCN TEQ) associated with these concentrations is lower than that reported for chlorinated dioxins or PCBs in food from Ireland. The dietary exposure of the Irish adult population to PCNs was calculated following a probabilistic approach, using the full dataset of occurrence and current consumption data. The estimates of dietary intakes at approximately 0.14 pg TEQ kg bw(-1) month(-1) for adults on an average diet, reflects the relatively lower occurrence levels.
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Affiliation(s)
- A R Fernandes
- Food and Environment Research Agency, Sand Hutton, York YO41 1LZ, UK.
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Fontaine E, McShane J, Carr M, Shackcloth M, Mediratta N, Page R, Poullis M. Should we operate on microscopic N2 non-small cell lung cancer? Interact Cardiovasc Thorac Surg 2011; 12:956-61; discussion 961. [DOI: 10.1510/icvts.2010.255323] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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Carney K, Light D, Carr M. A study of male breast cancer in a district general hospital. Eur J Surg Oncol 2011. [DOI: 10.1016/j.ejso.2011.03.108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Flood C, Ufnar J, Wang S, Johnson J, Carr M, Ellender R. Lack of correlation between enterococcal counts and the presence of human specific fecal markers in Mississippi creek and coastal waters. Water Res 2011; 45:872-878. [PMID: 20950837 DOI: 10.1016/j.watres.2010.09.026] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2010] [Revised: 09/13/2010] [Accepted: 09/17/2010] [Indexed: 05/30/2023]
Abstract
The objective of this study was to determine whether statistically valid correlations could be shown between enterococcal counts of samples from creek and coastal sites and the presence of two molecular, library-independent markers that specify human and/or sewage pollution. Four hundred ninety samples were collected between August 2007 and April 2009 to determine enterococcal counts and the presence of genetic markers for the sewage indicator organisms Methanobrevibacter smithii and Bacteroidales. The presence of human/sewage markers and enterococcal counts were higher in creek samples than coastal samples, but the higher creek levels did not statistically correlate with the either enterococcal count or the presence of the markers present in coastal samples. Furthermore, there was no correlation between enterococcal counts in coastal samples and either marker at any of the beach sites tested. The results of this investigation in Mississippi coastal waters suggest that human/sewage markers are unlikely to correlate with enterococci counts in the nearshore environment and that enterococcal counts may be indicative of other animal or environmental sources. Additionally, a study comparing conventional gel electrophoresis with capillary electrophoresis did not convincingly establish that one method was better than the other in regard to the results obtained. The capillary method does allow reproducibility of results and the ability to analyze multiple samples in a short period of time; however, the operational expenditures exceed the cost of traditional gel electrophoresis.
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Affiliation(s)
- C Flood
- Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406-001, USA
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White V, Carney K, Hollingsworth A, Tenna AS, McClean N, Carr M, Youssef M. Breast reconstruction for breast cancer patients. An audit of services in a non-screening district general hospital. Int J Surg 2011. [DOI: 10.1016/j.ijsu.2011.07.207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Raghavendra GKG, Sreenivasa RH, Ashok K, Chitsabesan P, McLean NR, Youssef M, Piper M, Carr M. Surgically placed wound catheters (SPWC) and local anaesthetic infusion in breast surgery: efficacy and safety analysis. Breast Dis 2011; 33:1-8. [PMID: 21965305 DOI: 10.3233/bd-2010-0316] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
BACKGROUND The effectiveness of surgically placed wound catheters (SPWC) and local anaesthetic infusion in the management of post-operative pain following breast surgery is controversial. This meta-analysis was performed to assess efficacy SPWC compared to other techniques of pain management. MATERIAL AND METHODS The meta-analysis included randomised control trials that compared SPWC with other forms of pain control. Post-operative opioid requirements and pain measured in visual analogue scale (VAS) were analysed using Comprehensive Meta-analysis Software version 2. Literature was reviewed for the safety of the SPWC and local anaesthetic infusion. RESULTS Four randomised controlled trials evaluating 147 women were included in the final analysis. The overall standard difference in means was 0.094 and 0.033 for post-operative opioid requirement and pain respectively favouring the SPWC and local anaesthetic infusion group. It is a safe technique with no major adverse events as a result. CONCLUSION Surgically placed wound catheters and local anaesthetic infusion is clinically safe in a wide range of surgical procedures on the breast and there appears to be a trend towards improved post operative pain relief. The studies analyzed in this review have several important drawbacks such as inadequate power to detect significant differences (none of them included more than 50 patients). A well designed RCT of patients undergoing breast surgery with an adequate number is of patients required to emphatically demonstrate if the operative site infusion with local anaesthetic solution postoperatively is safe and efficacious compared to opioid based regimens alone for post operative pain relief.
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White V, Harvey JR, Griffith CDM, Youssef M, Carr M. Sentinel lymph node biopsy in early breast cancer surgery--working with the risks of vital blue dye to reap the benefits. Eur J Surg Oncol 2010; 37:101-8. [PMID: 21195576 DOI: 10.1016/j.ejso.2010.12.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2010] [Revised: 11/21/2010] [Accepted: 12/06/2010] [Indexed: 11/24/2022] Open
Abstract
AIMS Sentinel lymph node biopsy (SLNB) is an important method of staging early breast cancer because of the inherent benefits it confers on patients in terms of arm function and quality of life. Its success depends on a high level of accuracy in detecting the sentinel node. This is achieved by a dual mapping technique that employs a radio-labelled nanocolloid and a vital blue dye. The vital dyes however carry the risk of anaphylaxis, and as more surgeons employ SLNB in their daily practice, a proportionate rise in the number of anaphylactic reactions can be expected. A comprehensive review of risks and benefits associated with using vital blues dyes has not been published and therefore a retrospective review was undertaken of the different levels of anaphylaxis associated with vital dyes as well as their benefits in SLNB. METHODS An OVID MEDLINE search was performed of the English published literature using appropriate search terms to find published trial data and case series that focused on adverse reactions to vital blue dyes. RESULTS The risk of severe anaphylaxis (grade 3) can be as low as 0.06%, and up to 0.4% for patients undergoing SLNB when data is analysed from large trials. Furthermore, adverse reactions associated with blue dyes are reversible with appropriate management. CONCLUSIONS Surgeons should continue to use vital dyes to ensure that SLNB remains a highly sensitive procedure.
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Affiliation(s)
- V White
- Department of Breast Surgery, Wansbeck General Hospital, Woodhorn Lane, Ashington NE63 9JJ, United Kingdom.
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Guru Raghavendra GK, White V, Harvey J, Youssef M, Wotherspoon W, Carr M. Efficacy of intra-operative wire localisation of breast lesions using ultrasound. Eur J Surg Oncol 2010. [DOI: 10.1016/j.ejso.2010.08.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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Abstract
The phage typing patterns of 194 typable strains of Staphylococcus aureus isolated in the years 1927 through 1947 and preserved as stock cultures revealed that 43 strains were of phage type 80/81. The occurrence of other typable strains in the broad phage groups I, II, and III corresponded closely to the frequency distribution of staphylococci reported in 1945 by Wilson and Atkinson.
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Carr M. The Small- and Medium-sized Enterprises Office (SME Office) at the European Medicines Agency. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz 2009; 53:20-3. [DOI: 10.1007/s00103-009-0989-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Raghavendra GKG, White V, Harvey JR, Youssef M, Wotherspoon W, Carr M. Efficacy of intra-operative wire localisation of breast lesions using ultrasound. Breast Cancer Res 2009. [PMCID: PMC4284862 DOI: 10.1186/bcr2401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
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Fernandes A, Tlustos C, Smith F, Carr M, Petch R, Rose M. Polybrominated diphenylethers (PBDEs) and brominated dioxins (PBDD/Fs) in Irish food of animal origin. Food Additives and Contaminants: Part B 2009; 2:86-94. [DOI: 10.1080/02652030903042525] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Thompson JG, Vanderwerf S, Seningen J, Carr M, Kloss J, Apple FS. Free Oxycodone Concentrations in 67 Postmortem Cases from the Hennepin County Medical Examiner's Office. J Anal Toxicol 2008; 32:673-9. [DOI: 10.1093/jat/32.8.673] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Radford S, Carr M, Hehir M, Davis B, Robertson L, Cockshott Z, Tipler S, Hewlett S. 'It's quite hard to grasp the enormity of it': perceived needs of people upon diagnosis of rheumatoid arthritis. Musculoskeletal Care 2008; 6:155-167. [PMID: 18649347 DOI: 10.1002/msc.132] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
OBJECTIVES The diagnosis of rheumatoid arthritis (RA) brings rapid pharmacological and multidisciplinary team interventions to address inflammatory processes and symptom management. However, people may also need support on the journey to self-management. The aim of this study was to explore what professional support patients feel they receive upon diagnosis, and what support they feel would be most helpful. METHODS Two focus groups comprised patients with at least five years'; disease duration (n = 7), and patients more recently diagnosed (5-18 months, n = 5). The latter had attended at least two appointments in a rheumatology nurse specialist clinic during the previous year, aimed at providing support upon diagnosis. Transcripts were subjected to thematic analysis to identify common issues regarding support needs, which were then grouped into themes. Interviewing and analysis was performed by researchers not involved in clinical care. RESULTS Four overarching themes emerged. 'Information' was needed about the symptoms of RA, its management and personal outcome, while 'Support' related to emotional needs ('It's quite hard to grasp the enormity of it'). Information and Support overlapped, in that patients wanted someone to talk to, and to be listened to. These two themes were underpinned by issues of service delivery: 'Choice' (patient or professional to talk to, groups, one-to-one) and 'Involvement' (holistic care, partnership), which overlapped in terms of the opportunity to decide when and which interventions to access. CONCLUSIONS People with RA report not only informational, but also emotional support needs at diagnosis. The potential for delivering emotional support to patients around the time of diagnosis warrants further exploration.
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Affiliation(s)
- S Radford
- Clinical Psychology Department, University of Plymouth, UK
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Hehir M, Carr M, Davis B, Radford S, Robertson L, Tipler S, Hewlett S. Nursing support at the onset of rheumatoid arthritis: Time and space for emotions, practicalities and self-management. Musculoskeletal Care 2008; 6:124-134. [PMID: 17922490 DOI: 10.1002/msc.115] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
BACKGROUND Following a diagnosis of rheumatoid arthritis (RA), patients have to adapt to lifelong, unpredictable but repeated episodes of pain and disability, potentially leading to permanent loss of function and its consequences on their lives. We established nurse clinics with the aim of supporting newly diagnosed RA patients in adapting to and managing their long-term condition. The aim of this study was to explore the content of clinic discussions in this new clinical service, in order to ascertain patients' needs upon diagnosis. METHODS All clinic letters from the nurse to the family doctor were analysed. Every topic mentioned was systematically coded independently by a researcher and a patient research partner, who compared and agreed codes. Codes were organized into categories, and, finally, into overarching themes. RESULTS Twenty-four patients had 74 appointment letters. A total of 79 codes were identified, from which ten categories emerged, and, finally, three overarching themes. The first theme related to 'Emotional support', which underpinned the other two themes and was discussed in almost all appointments. Issues included discussions about the emotional consequences of RA, needing time to adjust, frustration and fears for the future. The second theme 'Practicalities of the treatment of RA', included subordinate themes relating to the nature of RA, such as identity, cause, timeline, consequences and treatment. Medication issues were discussed and referrals to the multidisciplinary team were made. The final theme related to the 'Self-management of RA', and included discussions on physical symptoms and their management. CONCLUSIONS The offer to attend a nurse clinic soon after diagnosis allowed RA patients to discuss a wide range of practical and self-management issues. However, most patients also took the opportunity and time to discuss emotional reactions and adaptations to diagnosis. The data suggest an unmet need for emotional support that a nurse clinic might be able to provide.
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Affiliation(s)
- M Hehir
- University of the West of England, Bristol, UK.
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Irwin D, Helm K, Campbell N, Imamura M, Fagan K, Harral J, Carr M, Young KA, Klemm D, Gebb S, Dempsey EC, West J, Majka S. Neonatal lung side population cells demonstrate endothelial potential and are altered in response to hyperoxia-induced lung simplification. Am J Physiol Lung Cell Mol Physiol 2007; 293:L941-51. [PMID: 17693487 DOI: 10.1152/ajplung.00054.2007] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Lung side population (SP) cells are resident lung precursor cells with both epithelial and mesenchymal potential that are believed to play a role in normal lung development and repair. Neonatal hyperoxic exposure impairs lung development leading to a long-term decrease in gas exchange surfaces. The hypothesis that lung SP cells are altered during impaired lung development has not been studied. To address this issue, we characterized the endothelial potential of neonatal lung SP and subsets of lung SP from neonatal mice following hyperoxic exposure during room air recovery. Lung SP cells were isolated and sorted on the basis of their capacity to efflux Hoechst 33342. The lung SP was further sorted based on expression of Flk-1 and CD45. In vitro, both CD45pos/Flk-1pos and CD45neg/Flk-1pos bind isolectin B4 and incorporate LDL and form networks in matrigel, indicating that these populations have endothelial cell characteristics. Hyperoxic exposure of neonatal mice resulted in subtle changes in vascular and alveolar density on P13, which persisted with room air recovery to P41. During room air recovery, a decrease in lung SP cells was detected in the hyperoxic-exposed group on postnatal day 13 followed by an increase on day 41. Within this group, the lung SP subpopulation of cells expressing CD45 increased on day 21, 41, and 55. Here, we show that lung SP cells demonstrate endothelial potential and that the population distribution changes in number as well as composition following hyperoxic exposure. The hyperoxia-induced changes in lung SP cells may limit their ability to effectively contribute to tissue morphogenesis during room air recovery.
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Affiliation(s)
- D Irwin
- Department of Medicine, Cardiovascular Pulmonary Research Section, University of Colorado Health Sciences Center, Denver, USA
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