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Gopal K, Deb B, Uma N, Balan S, GayathriSivakumar, Chandra Mohan M, Rajendran P. Comparative Evaluation of Bioavailability, Efficacy and Safety of MICROCORE NESC ® with Calcium Carbonate and Calcium Citrate Malate in Osteopenic and Osteoporotic Patients: A Randomized Clinical Trial. Indian J Orthop 2024; 58:535-541. [PMID: 38694695 PMCID: PMC11058142 DOI: 10.1007/s43465-024-01117-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 01/30/2024] [Indexed: 05/04/2024]
Abstract
Introduction Osteoporosis is a skeletal disease characterized by loss of bone mass, reduced bone strength and increased bone fragility predisposing to fractures. This study was planned to evaluate the efficacy, safety and relative bioavailability of Microcore NESC® (Natural Egg Shell Calcium) in osteopenia and osteoporotic patients. Methods This was a randomized, open label, parallel group interventional clinical trial which included 60 study participants with osteopenia and osteoporosis who were randomized into three groups (20 each). Group 1-Microcore NESC®, Group 2-Shelcal and Group 3-CCM with 12 weeks treatment period. The participants were evaluated for relative oral bioavailability, bone mineral density (BMD), serum osteocalcin, change in VAS pain scale and quality of life-Questionnaires. Results There was significant improvement in the BMD T scores-post-treatment with MICROCORE NESC® and Shelcal. Higher percentage of improvement in calcium absorption as depicted by an increase in serum calcium levels (10.23%) in the MICROCORE NESC®-treated group when compared to Shelcal (7.7%) and CCM (7.2%). The relative bioavailability of MICROCORE NESC® with respect to Shelcal was 93%. Discussion MICROCORE NESC®, has shown a better oral relative bio availability of calcium (93%), better improvement of BMD T score compared to Shelcal and CCM. The general health status has improved to very good/excellent in 83% of patients in MICROCORE NESC®-treated group. Thus, MICROCORE NESC® can be considered a better and safe calcium supplement, as there are very few side effects observed without any clinically significant abnormalities in lab parameters.
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Affiliation(s)
- Krishna Gopal
- Department of Orthopaedics, Mahatma Gandhi Medical College and Research Institute, Puducherry, India
| | - Bijoy Deb
- Integrative Medicine, Medical Affairs, Ki3 Private Limited, Chennai, Tamil Nadu, India
| | - N. Uma
- Department of Pharmacology, Mahatma Gandhi Medical College and Research Institute, Puducherry, India
| | - Sakthi Balan
- Department of Pharmacology, Sri Venkateshwaraa Medical College Hospital and Research Centre, Ariyur, Puducherry, India
| | | | | | - Priya Rajendran
- Microcore Research Labs India Pvt Ltd, Erode, Tamil Nadu, India
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Rajendran P, Jayabal L, Venkatesan M, Kumar MP, Ramalingam R, Sivaraman P, Fredrick A, Shanmugam S. Assessing the utility of Truenat in extrapulmonary tuberculosis diagnosis - A NRL's experience. J Clin Tuberc Other Mycobact Dis 2024; 35:100420. [PMID: 38440213 PMCID: PMC10909875 DOI: 10.1016/j.jctube.2024.100420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2024] Open
Abstract
Background Diagnosis of extra pulmonary TB (EPTB) remains a big challenge. While data on utility of Xpert testing in EPTB diagnosis is enormous, there is limited data on Truenat MTB testing. Aim In this study we aimed to evaluate the usefulness of Truenat in EPTB diagnosis. Materials and methods The study included patients suspected and/or treated for EPTB located from Chennai district during the year 2021-2022. All processed EPTB samples were subjected to smear microscopy, culture and Truenat MTB testing. Results Of the 195 samples tested, 38 (19.4%) samples were positive for EPTB by any one of the diagnostic methods (smear, culture, microscopy). Out of these 38, 16 (42.1 %) were positive for MTB by Truenat and negative by Culture, 12 (31.5%) were positive by culture but negative by Truenat and 8 (21%) were positive by both Truenat and/or smear and culture. The sensitivity and specificity of the test was calculated with the composite reference standard (Culture (exclusion of colonies as positives), clinical conditions, and smear) and was found to be 60% and 100% respectively. Conclusion Truenat MTB test is a cost-effective rapid molecular test that can be used only for the diagnosis of presumptive EPTB and not on follow-up samples.
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Affiliation(s)
- Priya Rajendran
- ICMR -National Institute for Research in Tuberculosis, Chennai, India
| | - Lavanya Jayabal
- District Tuberculosis Office, National Tuberculosis Elimination Programme, Chennai, India
| | | | - Michel Prem Kumar
- ICMR -National Institute for Research in Tuberculosis, Chennai, India
| | | | - P Sivaraman
- ICMR -National Institute for Research in Tuberculosis, Chennai, India
| | - Asha Fredrick
- State Tuberculosis Office, National Tuberculosis Elimination Programme, Chennai, India
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Rajendran P, Thomas SV, Balaji S, Selladurai E, Jayachandran G, Malayappan A, Bhaskar A, Palanisamy S, Ramamoorthy T, Hasini S, Hissar S. Paediatric pulmonary disease-are we diagnosing it right? Front Pediatr 2024; 12:1370687. [PMID: 38659699 PMCID: PMC11039875 DOI: 10.3389/fped.2024.1370687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 03/11/2024] [Indexed: 04/26/2024] Open
Abstract
Background It has been reported that differential diagnosis of bacterial or viral pneumonia and tuberculosis (TB) in infants and young children is complex. This could be due to the difficulty in microbiological confirmation in this age group. In this study, we aimed to assess the utility of a real-time multiplex PCR for diagnosis of respiratory pathogens in children with pulmonary TB. Methods A total of 185 respiratory samples [bronchoalveolar lavage (15), gastric aspirates (98), induced sputum (21), and sputum (51)] from children aged 3-12 years, attending tertiary care hospitals, Chennai, India, were included in the study. The samples were processed by N acetyl L cysteine (NALC) NAOH treatment and subjected to microbiological investigations for Mycobacterium tuberculosis (MTB) diagnosis that involved smear microscopy, Xpert® MTB/RIF testing, and liquid culture. In addition, DNA extraction from the processed sputum was carried out and was subjected to a multiplex real-time PCR comprising a panel of bacterial and fungal pathogens. Results Out of the 185 samples tested, a total of 20 samples were positive for MTB by either one or more identification methods (smear, culture, and GeneXpert). Out of these 20 MTB-positive samples, 15 were positive for one or more bacterial or fungal pathogens, with different cycle threshold values. Among patients with negative MTB test results (n = 165), 145 (87%) tested positive for one or more than one bacterial or fungal pathogens. Conclusion The results suggest that tuberculosis could coexist with other respiratory pathogens causing pneumonia. However, a large-scale prospective study from different geographical settings that uses such simultaneous detection methods for diagnosis of childhood tuberculosis and pneumonia will help in assessing the utility of these tests in rapid diagnosis of respiratory infections.
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Affiliation(s)
| | | | | | | | | | | | - Adhin Bhaskar
- ICMR—National Institute for Research in TB, Chennai, India
| | | | | | - Sindhu Hasini
- ICMR—National Institute for Research in TB, Chennai, India
| | - Syed Hissar
- ICMR—National Institute for Research in TB, Chennai, India
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Giridharan P, Murugesan H, Selvaraju S, Frederick A, Selvavinayagam TS, Nagarajan K, Thiruvengadam K, Krishnan R, Rajendran P, Kumaran P, Kumar M, Chandrasekeran P. Operational Challenges in Conducting a Subnational TB Prevalence Survey in India: Lessons Learned for Resource-Limited, High-Burden Settings. Glob Health Sci Pract 2024; 12:e2300284. [PMID: 38272679 PMCID: PMC10906557 DOI: 10.9745/ghsp-d-23-00284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 12/19/2023] [Indexed: 01/27/2024]
Abstract
Estimating the burden of TB at the subnational level is critical to planning and prioritizing resources for TB control activities according to the local epidemiological situation. We report the experiences and operational challenges of implementing a TB prevalence survey at the subnational level in India. Information was collected from research reports that gathered data from periodic meetings, informal discussions with study teams, letters of communication, and various site visit reports. During the implementation of the survey, several challenges were encountered, including frequent turnover in human resources, lack of survey participation and community engagement, breakdown of X-ray machines, laboratory issues that delayed sputum sample testing, delays in X-ray reading, and network and Internet connectivity issues that impeded data management. To help ensure the survey was implemented in a timely manner, we developed several solutions, including planning ahead to anticipate challenges, ensuring timely communication, having a high commitment from all stakeholders, having strong team motivation, providing repetitive hands-on training, and involving local leaders to increase community engagement. This experience may help future states and countries that plan to conduct TB prevalence surveys to address these anticipated challenges and develop alternative strategies well in advance.
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Affiliation(s)
| | | | - Sriram Selvaraju
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
| | - Asha Frederick
- Directorate of Medical and Rural Health Services, Tamil Nadu, India
| | | | | | | | | | - Priya Rajendran
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
| | - Paul Kumaran
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
| | - Makesh Kumar
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
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Al-Ramadan SY, Moqbel MS, Akhodair KM, Rajendran P, Salem KTAM, Alshubaith IH, Alluwaimi AM. Innate and adaptive immune responses in the intestine of camel (Camelus dromedarius) naturally infected with Mycobacterium avium subspecies paratuberculosis. Trop Anim Health Prod 2024; 56:87. [PMID: 38393533 DOI: 10.1007/s11250-024-03924-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 02/06/2024] [Indexed: 02/25/2024]
Abstract
The spread of John's disease in camel herds (Camelus dromedarius) has been worldwide reported. Despite extensive studies on Mycobacterium avium subspecies paratuberculosis (MAP) infection in camels, the complete pathogenesis and epidemiology of this infection have not been fully exploited. The objective of the study is focusing on the nature of the immune responses, and the types of the recruited cells were studied in the intestine of naturally infected camels employing immunohistochemistry to analyze the expression of CD335, CD103, CD11b, and CD38 markers. Marked expression of some or all of the markers was observed in the ileum, mesenteric, and supramammary lymph nodes of the old infected camels. The expression of CD335, a well-known natural killer (NK) cell marker, was detected in the mesenteric lymph node, while the dendritic cell (DCs) marker, CD103, was markedly expressed in the villi and propria submucosa (PS) of the ileum in old infected camels. CD103 + and CD11b + DCs were detected in the mesenteric lymph nodes of young infected camels. The expression of CD38, a crucial proinflammatory marker, was more noticeable in the peripheral region of the mesenteric lymph node. The expression of these markers in the infected camel intestine was peculiar and is reported for the first time. In summary, the unique expression patterns of CD335, CD103, CD11b, and CD38 markers in naturally infected camel intestines revealed through immunohistochemistry new insights into the immune responses associated with MAP infection. These first-time observations suggest potential roles of innate and adaptive immunity, highlighting specific aspects of MAP immunopathology. Further studies with targeted tools are crucial for a precise understanding of these markers' roles in the infected intestines.
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Affiliation(s)
- Saeed Y Al-Ramadan
- Department of Anatomy, College of Veterinary Medicine, King Faisal University, 31982, Al-Ahsa, Saudi Arabia.
| | - M S Moqbel
- Department of Anatomy, College of Veterinary Medicine, King Faisal University, 31982, Al-Ahsa, Saudi Arabia
| | - K M Akhodair
- Department of Anatomy, College of Veterinary Medicine, King Faisal University, 31982, Al-Ahsa, Saudi Arabia
| | - P Rajendran
- Department of Biological Sciences, College of Science, King Faisal University, Al-Ahsa, Saudi Arabia
- COMManD, Department of Biochemistry, Saveetha Dental College & Hospitals, Saveetha Institute of Medical and Technical Sciences, Velappanchavadi, Chennai, 600 077, Tamil Nadu, India
| | - K T Al-Mohammed Salem
- Animal Resources Management, Ministry of Environment, Water and Agriculture, Al-Ahsa, Saudi Arabia
| | - I H Alshubaith
- International Organizations and Healthy Cities Department, Al-Ahsa Municipality, Al-Ahsa, Saudi Arabia
| | - A M Alluwaimi
- Formerly Department of Microbiology and Parasitology, College of Veterinary Medicine, King Faisal University, Al-Ahsa, Saudi Arabia
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Rajendran P, Padmapriyadarsini C, Nagarajan N, Samyuktha R, Govindaraju V, Golla R, Ashokkumar S, Shanmugam S. Molecular Characterisation of M. kansasii Isolates by Whole-Genome Sequencing. Pathogens 2023; 12:1249. [PMID: 37887765 PMCID: PMC10610326 DOI: 10.3390/pathogens12101249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/07/2023] [Accepted: 09/14/2023] [Indexed: 10/28/2023] Open
Abstract
M. kansasii is the most common non-tuberculous mycobacteria, known to be causing pulmonary and extrapulmonary diseases in humans. Based on molecular methods, M. kansasii has been previously classified into seven different subtypes. Now, based on whole-genome sequence analysis, a new species designation was proposed, in which M. kansasii species was designated subtype 1 and is of pathogenic significance in both immunocompetent and immunocompromised patients. The aim of the study is to examine the distribution of subtypes, based on whole-genome sequence analysis, and identify the genetic determinants of drug resistance for the isolates. Whole-genome sequencing was performed using 12 isolates for which phenotypic DST results were available. A phylogenetic tree was constructed by alignment of each of the 12 isolates and the additional strains, as well as the M. kansasii reference strain, using the MAFFT algorithm. Based on this analysis, all 12 isolates were classified as subtype I. Drug-resistant mutations were identified by analysing the isolates with known drug-resistant loci of MTB and NTM. Although we had mutations in the drug-resistant genes, the significance of those mutations could not be explored due to the minimal availability of data available to compare. Further large-scale studies targeting the phenotypic and genotypic drug-resistance pattern, along with whole-genome analysis, will facilitate a better understanding of the resistance mechanisms involved in M. kansasii.
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Affiliation(s)
| | | | | | | | | | | | | | - Sivakumar Shanmugam
- ICMR—National Institute for Research in Tuberculosis, Chennai 600031, India; (P.R.); (C.P.); (N.N.); (R.S.); (V.G.); (S.A.)
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Gopalaswamy R, Kumar N, Vashistha H, Rajendran P, Kayesth J, Peravali CJ, Kashyap S, Ghosh S, Yumo H, Moore M, Anand S, Ramachandran R, Alavadi U, Saini S, Shanmugam S. Comprehensive assessment of invalid and indeterminate results in Truenat MTB-RIF testing across sites under the national TB elimination program of India. Front Public Health 2023; 11:1255756. [PMID: 37886056 PMCID: PMC10598606 DOI: 10.3389/fpubh.2023.1255756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Accepted: 09/11/2023] [Indexed: 10/28/2023] Open
Abstract
Introduction Truenat MTB-RIF assay (Truenat), a nucleic acid amplification test (NAAT), is a real-time polymerase chain reaction (RT-PCR) chip-based assay that can detect Mycobacterium tuberculosis (Mtb) and rifampicin (RIF) drug resistance using portable, battery-operated devices. The National TB Elimination Program (NTEP) in India introduced this novel tool at the district and subdistrict level in 2020. This study aimed to assess the level and causes of inconclusive results (invalid results, errors, and indeterminate results) in MTB and RIF testing at NTEP sites and the root causes of these in the programmatic setting. Methods Truenat testing data from 1,690 functional Truenat sites under the NTEP from April to June 2021 were analyzed to assess the rates of errors, invalid MTB results, and indeterminate RIF results. Following this analysis, 12 Truenat sites were selected based on site performance in Truenat testing, diversity of climatic conditions, and geographical terrain. These sites were visited to assess the root causes of their high and low rates of inconclusive results using a structured checklist. Results A total of 327,649 Truenat tests performed for MTB and RIF testing were analyzed. The rate of invalid MTB results was 5.2% [95% confidence interval (CI): 5.11-5.26; n = 16,998] and the rate of errors was 2.5% (95% CI: 2.46-2.57; n = 8,240) in Truenat MTB chip testing. For Mtb-positive samples tested using the Truenat RIF chip for detection of RIF resistance (n = 40,926), the rate of indeterminate results was 15.3% (95% CI: 14.97-15.67; n = 6,267) and the rate of errors was 1.6% (95% CI: 1.53-1.78; n = 675). There was a 40.1% retesting gap for Mtb testing and a 78.2% gap for inconclusive RR results. Among the inconclusive results retested, 27.9% (95% CI: 27.23-28.66; n = 4,222) were Mtb-positive, and 9.2% (95% CI: 7.84-10.76; n = 139) were detected as RR. Conclusion The main causes affecting Truenat testing performance include suboptimal adherence to standard operating procedures (SOPs), inadequate training, improper storage of testing kits, inadequate sputum quality, lack of quality control, and delays in the rectification of machine issues. Root cause analysis identified that strengthening of training, external quality control, and supervision could improve the rate of inconclusive results. Ensuring hands-on training of technicians for Truenat testing and retesting of samples with inconclusive results are major recommendations while planning for Truenat scale-up. The recommendations from the study were consolidated into technical guidance documents and videos and disseminated to laboratory staff working at the tiered network of TB laboratories under the NTEP in order to improve Truenat MTB-RIF testing performance.
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Affiliation(s)
- Radha Gopalaswamy
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
| | - Nishant Kumar
- Central Tuberculosis Division, Ministry of Health and Family Welfare, New Delhi, India
| | - Himanshu Vashistha
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Priya Rajendran
- ICMR-National Institute for Research in Tuberculosis, Chennai, India
| | - Jyoti Kayesth
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Carel Joseph Peravali
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Satabdi Kashyap
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Shreeparna Ghosh
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Habakkuk Yumo
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | - Moe Moore
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
| | | | | | - Umesh Alavadi
- United States Agency for International Development, New Delhi, India
| | - Sanjeev Saini
- USAID’s Infectious Diseases Detection and Surveillance (IDDS) Project Awarded to Inner City Fund (ICF), Virginia, VA, United States
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Rajendran P, Saini S, Kumar N, Vashistha H, Thiruvengadam K, Ramamoorthy T, Gopalaswamy R, Kayesth J, Alavadi U, Moore M, Joshi RP, Ramachandran R, Anand S, Shanmugam S, Padmapriyadarsini C. Establishing proof of concept for utility of Trueprep ®-extracted DNA in line-probe assay testing. Int J Tuberc Lung Dis 2023; 27:742-747. [PMID: 37749831 PMCID: PMC10519390 DOI: 10.5588/ijtld.23.0003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Accepted: 04/01/2023] [Indexed: 09/27/2023] Open
Abstract
BACKGROUND AND OBJECTIVES: With an increased demand for rapid, diagnostic tools for TB and drug resistance detection, Truenat® MTB-RIF assay has proven to be a rapid point of care molecular test. The present study aimed to establish a proof of concept of using Trueprep-extracted DNA for line-probe assay (LPA) testing.METHODS: A total of 150 sputum samples (MTB-positive at Truenat sites) were divided into two aliquots. One aliquot was used for DNA extraction using the Trueprep device and MTB testing. The second aliquot of the sample was subjected to GenoLyse® DNA extraction. DNA from both the Trueprep and GenoLyse methods was subjected to first-line (FL) and second-line (SL) LPA testing.RESULTS: Of 139 Trueprep-extracted DNA, respectively 135 (97%) and 105 (75%) had interpretable results by FL and SL-LPA testing. Of 128 GenoLyse-extracted DNA, all 128 (100%) had interpretable FL-LPA results and 114 (89%) had interpretable SL-LPA results.CONCLUSION: The results obtained in this study indicate that Trueprep-extracted DNA can be used in obtaining valid LPA results. However, the study needs to be conducted on a larger sample size before our recommendations can be used for policy-making decisions.
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Affiliation(s)
- P Rajendran
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
| | - S Saini
- Infectious Disease Detection and Surveillance Project, United States Agency for International Development (USAID), ICF Incorporated, Reston, VA, USA
| | - N Kumar
- Central TB Division, Ministry of Health and Family Welfare, New Delhi
| | - H Vashistha
- Infectious Disease Detection and Surveillance Project, United States Agency for International Development (USAID), ICF Incorporated, Reston, VA, USA
| | - K Thiruvengadam
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
| | - T Ramamoorthy
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
| | - R Gopalaswamy
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
| | - J Kayesth
- Infectious Disease Detection and Surveillance Project, United States Agency for International Development (USAID), ICF Incorporated, Reston, VA, USA
| | | | - M Moore
- Infectious Disease Detection and Surveillance Project, United States Agency for International Development (USAID), ICF Incorporated, Reston, VA, USA
| | - R P Joshi
- Central TB Division, Ministry of Health and Family Welfare, New Delhi
| | - R Ramachandran
- World Health Organization India Office, New Delhi, India
| | - S Anand
- World Health Organization India Office, New Delhi, India
| | - S Shanmugam
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
| | - C Padmapriyadarsini
- National Institute for Research in Tuberculosis, Indian Council of Medical Research, New Delhi
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Radhakrishnan R, Prabuseenivasan S, Hannah S, Vaishanavee V, Senthildevi V, Kannadhasan T, Suchithra R, Rajendran P, Chinnaiyan P, Jayabal L, Frederick A, Shanmugam S. Genotype MTBDRsl version 2 and phenotypic drug resistance detection of Mycobacterium tuberculosis for fluoroquinolones and aminoglycosides. Int J Mycobacteriol 2023; 12:299-304. [PMID: 37721236 DOI: 10.4103/ijmy.ijmy_120_23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2023] Open
Abstract
Background Information on genotypic with comparison of phenotypic drug sensitivity test of anti-tuberculosis (TB) has been reported in several studies, which have variable results. The present study aimed to assess the Genotype MTBDRsl version 2.0/Line probe assay (LPA) for the detection of fluoroquinolones (FQ) and aminoglycosides (AMGs) resistance mutations among drug-resistant Mycobacterium TB (MTB) strains and also to compare the patterns of genotypic mutations of gyrA/B, rrs, and eis with mycobacteria growth indicator tube (MGIT 960). Methods A total of 1416 samples were subjected to Genotype MTBDRsl version 2.0 assay. One hundred and twenty sputum smear positive MTB isolates and 37 sputum smear negative MTB isolates confirmed multiple drug resistance resistant to FQ and AMG by the Genotype MTBDRsl version 2.0 were subjected to phenotypic drug susceptibility testing (DST) were analyzed. Results The association sensitivity, specificity, positive predictive value, negative predictive value, and accuracy for the resistance detection between MGIT (DST) and the Genotype MTBDRsl version 2.0 assay was significant (P < 0.01) of moxifloxacin (MFX) concentration. Sensitivity and specificity value for kanamycin (KAN) resistance was 76% and 89%; 47% and 94% for capreomycin (CAP); and 60% and 76% for low-level KAN, respectively. Conclusion Our results indicate that MFX (0.25and 1 μg/mL), KAN (2.5 μg/mL), and CAP (2.5 μg/mL) significantly (P < 0.01) and support the World Health Organization guidance to test FQ and AMG by genotypic test.
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Affiliation(s)
| | - S Prabuseenivasan
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - S Hannah
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - V Vaishanavee
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - V Senthildevi
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - T Kannadhasan
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - R Suchithra
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Priya Rajendran
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Ponnuraja Chinnaiyan
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Lavanya Jayabal
- District TB Centre, National TB Elimination Programme, Chennai, Tamil Nadu, India
| | | | - Sivakumar Shanmugam
- ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
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Rajendran P, Padmapriyadarsini C, Nair S, Sivakumar S. Newer TB diagnostics: An update. Indian J Tuberc 2023; 70:372-375. [PMID: 37562916 DOI: 10.1016/j.ijtb.2023.04.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2023] [Revised: 04/06/2023] [Accepted: 04/20/2023] [Indexed: 08/12/2023]
Abstract
In recent years, nucleic-acid amplification tests (NAATs), which are highly specific and sensitive, have helped to transform the TB diagnostic landscape. According to the WHO 2021 Guidelines on Diagnostics, the NAATs used in TB diagnosis at the point of care (POC) include Xpert MTB/RIF a cartridge-based test manufactured by Cepheid, and Truenat a chip-based test manufactured by Molbio. Other POC tests that are expected to be implemented in near future include Xpert Omni and Xpert MTB/XDR. The use of line probe assay is involved at the level of reference labs for the detection of MTB and its resistance to first-line (Isoniazid and Rifampicin) and second-line (fluoroquinolones and second-line injectables) drugs. When the currently available NAATs detect mutations for drug resistance at a particular region of MTB sequence, the Whole genome sequencing (WGS) platform demonstrates the exceptional potential for reliable and comprehensive resistance prediction for MTB isolates, by multiple gene regions or whole genome sequence analysis allowing for accurate clinical decisions.
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Affiliation(s)
- Priya Rajendran
- ICMR-National Institute for Research in Tuberculosis, Chetpet, Chennai, India
| | - C Padmapriyadarsini
- ICMR-National Institute for Research in Tuberculosis, Chetpet, Chennai, India.
| | | | - S Sivakumar
- ICMR-National Institute for Research in Tuberculosis, Chetpet, Chennai, India
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11
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Inbaraj LR, Daniel J, Rajendran P, Bhaskar A, Srinivasalu VA, Narayanan MKS, Shewade HD, Kirubakaran R, Scandrett K, Malaisamy M, Takwoingi Y, Padmapriyadarsini C. Truenat MTB assays for pulmonary tuberculosis and rifampicin resistance in adults. Cochrane Database Syst Rev 2023; 2023:CD015543. [PMCID: PMC9837843 DOI: 10.1002/14651858.cd015543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
This is a protocol for a Cochrane Review (diagnostic). The objectives are as follows: To determine the diagnostic accuracy of Truenat assays (MTB, MTB Plus, and MTB RIF Dx) for detecting pulmonary tuberculosis and rifampicin resistance in adults with presumptive pulmonary tuberculosis.
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Affiliation(s)
| | - Leeberk Raja Inbaraj
- Department of Clinical ResearchICMR – National Institute for Research in TuberculosisChennaiIndia
| | - Jefferson Daniel
- Department of Pulmonary MedicineChristian Medical CollegeVelloreIndia
| | - Priya Rajendran
- Department of BacteriologyICMR – National Institute for Research in TuberculosisChennaiIndia
| | - Adhin Bhaskar
- Department of BiostatisticsICMR – National Institute for Research in TuberculosisChennaiIndia
| | - Vignes Anand Srinivasalu
- Department of Clinical ResearchICMR - National Institute for Research in TuberculosisChennaiIndia
| | - Mukesh KS Narayanan
- Department of EpidemiologyICMR – National Institute for Research in TuberculosisChennaiIndia
| | - Hemant D Shewade
- Division of Health System ResearchICMR – National Institute of EpidemiologyChennaiIndia
| | - Richard Kirubakaran
- Prof. BV Moses Center for Evidence-Informed Health Care and Health PolicyChristian Medical CollegeVelloreIndia
| | - Katie Scandrett
- Test Evaluation Research Group, Institute of Applied Health ResearchUniversity of BirminghamBirminghamUK
| | - Muniyandi Malaisamy
- Department of Health EconomicsICMR – National Institute for Research in TuberculosisChennaiIndia
| | - Yemisi Takwoingi
- Test Evaluation Research Group, Institute of Applied Health ResearchUniversity of BirminghamBirminghamUK
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12
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R L, Rejiniemon TS, Sathya R, Kuppusamy P, Al-Mekhlafi FA, Wadaan MA, Rajendran P. Adsorption of heavy metals from the aqueous solution using activated biomass from Ulva flexuosa. Chemosphere 2022; 306:135479. [PMID: 35753418 DOI: 10.1016/j.chemosphere.2022.135479] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 05/31/2022] [Accepted: 06/21/2022] [Indexed: 06/15/2023]
Abstract
The removal of various highly toxic heavy metals from wastewater environment is an important task to improve environment. The biosorption potential of cadmium, cobalt and zinc was evaluated using Ulva flexuosa biomass. The impacts of adsorbent dosage, pH of the medium, contact time, and agitation speed were analyzed. The maximum biosorption potential was reached at pH 4.0, 0.4 g initial biosorbent dosage, contact time 40 min and 30 mg/L initial metal concentration for cadmium, while the other factors were similar to zinc, except 35 min contact time (p < 0.01). The optimum absorption was pH 4, 0.6% adsorbent dosage, after 30 min contact time with the heavy metals and 40 mg/L cobalt concentration. Heavy metal removal efficiency was 94.8 ± 3.3%, 87.5 ± 2.3%, and 90.8 ± 1.4%, for cadmium, cobalt, and zinc, respectively (p < 0.01). The Langmuir constant (R2) was 0.980 for cadmium, 0.838 for cobalt and it was 0.718 for zinc. The present results revealed that the selected acid modified biomass was highly suitable for the adsorption of metal ions such as, Cd2+, Co2+ and Zn2+. The present work revealed the potential application of algal biomass for the removal of various heavy metals from the environment.
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Affiliation(s)
- Lekshmi R
- Department of Botany and Biotechnology, Milad-E-Sherif Memorial (MSM) College, Kayamkulam, Kerala, India
| | - T S Rejiniemon
- Department of Botany and Biotechnology, AJ College of Science and Technology, Thonnakal, Trivandrum, India
| | - Rengasamy Sathya
- Department of Microbiology, Centre for Research and Development, PRIST University, Tamil Nadu, 613 403, India
| | - Palaniselvam Kuppusamy
- Department of Animal Biotechnology, Jeonbuk National University, Jeonju, 54896, South Korea
| | - Fahd A Al-Mekhlafi
- Department of Zoology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Muhammad A Wadaan
- Department of Zoology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - P Rajendran
- Kanyakumari Field Centre of Central Marine Fisheries Research Institute, Kanyakumari, 629702, Tamilnadu, India.
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13
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Rajendran P, Murugesan B, Balaji S, Shanmugam S, Palanisamy S, Ramamoorthy T, Hasini S, Devaleenal B, Watson B. Standardization of a stool concentration method for Mycobacterium tuberculosis detection in the pediatric population. Int J Mycobacteriol 2022; 11:371-377. [PMID: 36510920 DOI: 10.4103/ijmy.ijmy_126_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Background The inability of young children to expectorate sputum and paucibacillary status of Mycobacterium tuberculosis (MTB) increases its diagnostic complexity. In this study, we aimed to standardize a stool concentration method for the detection of MTB and its drug resistance by line probe assay (LPA). Methods The stool from 10 healthy children spiked with H37Rv in five different dilutions (1:1, 1:10, 1:100, 1:1000, and 1:10,000), and stool from 10 confirmed TB and 54 clinically diagnosed TB children were subjected to an in-house stool concentration protocol. All the processed filtrates were subjected to smear microscopy, solid culture, Xpert ultra testing, and LPA. Results Of 10 control samples, growth was seen in four samples (neat 1:1). In smear microscopy, bacilli could be seen in eight samples (1:1 and 1:10). Xpert ultra testing could detect MTB in eight samples in all dilutions with different loads. LPA could detect MTB in all samples and dilutions. In microbiologically confirmed children, seven out of 10 stool samples tested were positive. Out of 54 children with clinically diagnosed TB, 4 (7.4%) could be confirmed by microbiological diagnosis. Conclusion The protocol standardized in this study proves to be better working in the molecular detection of MTB.
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Affiliation(s)
- Priya Rajendran
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Baskaran Murugesan
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Sarath Balaji
- Department of Pediatric Pulmonology, Institute of Child Health, Chennai, Tamil Nadu, India
| | - Sivakumar Shanmugam
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Sivaraman Palanisamy
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Thirumalani Ramamoorthy
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Sindhu Hasini
- Department of Bacteriology, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Bella Devaleenal
- Department of Clinical Research, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Basilea Watson
- Department of Electronic Data Processing, ICMR - National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
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14
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Balasubramanian C, Natarajan G, Senthilkumaran G, Devaraju P, Murugesan V, Vs J, Rajarathinam V, Lamech T, Thanikachalam D, Kamalakannan G, Shaji S, Kannan B, Rajendran M, Rajendran P. POS-102 INCIDENCE, MICROBIOLOGICAL SPECTRUM AND OUTCOME OF ACUTE PERITONITIS IN CONTINUOUS AMBULATORY PERITONEAL DIALYSIS PATIENTS. Kidney Int Rep 2022. [DOI: 10.1016/j.ekir.2022.07.120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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15
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Devaraju P, Murugesan V, Vs J, Balasubramanian C, Senthilkumaran G, Rajarathinam V, Natarajan G, Rajendran P, Dakshinamoorthy S, Jeyachandran D, Thanikachalam D, Arumugam V, Rajendiran A, Durai R, Solomon D. POS-101 A STUDY ON BACTERIAL INFECTIONS IN KIDNEY TRANSPLANT RECIPIENTS. Kidney Int Rep 2022. [DOI: 10.1016/j.ekir.2022.07.119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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16
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P V, Ravindran K, Solomon D, Shaji S, Kamalakannan G, Kannan B, Aruyerchelvan C, Lamech T, Dakshinamoorthy S, Arumugam V, Alavudeen S, Rajendran P, Natarajan G. POS-801 COVID ASSOCIATED MUCORMYCOSIS IN KIDNEY TRANSPLANT RECIPIENTS- A CASE SERIES. Kidney Int Rep 2022. [DOI: 10.1016/j.ekir.2022.01.837] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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17
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Rajendran P, Kumar MP, Thiruvengadam K, Sreenivasan P, Veeraraghavan T, Ramalingam R, Hasini S, Dhanaraju T, Kuppamuthu R, Shanmugam S, Frederick A, Padmapriyadarsini C. Characterization of probes associated with rifampicin resistance in M.tuberculosis detected by GenXpert from a national reference laboratory at Chennai. Tuberculosis (Edinb) 2022; 133:102182. [DOI: 10.1016/j.tube.2022.102182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 01/29/2022] [Accepted: 02/06/2022] [Indexed: 11/29/2022]
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18
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Rajendran P, Padmapriyadarsini C, Vijayaraghavan V, Manoharan T, Lokanathan LM, Kadhar PB, Jayabal L, Sivaramakrishnan G. Drug susceptibility profiling of pulmonary Mycobacterium kansasii and its correlation with treatment outcome. Ann Thorac Med 2021; 16:323-328. [PMID: 34820019 PMCID: PMC8588942 DOI: 10.4103/atm.atm_45_21] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 04/08/2021] [Indexed: 11/24/2022] Open
Abstract
OBJECTIVES: With the introduction of newer molecular diagnostic tools to identify Mycobacterium tuberculosis, an increasing number of nontuberculous mycobacterium (NTM) is being identified. However, the drug resistance pattern of the NTM species identified is less explored. The objective of this study is to study the drug resistance patterns of Mycobacterium kansasii species isolated in a tuberculosis-endemic setting at South India. METHODS: A wide profile of NTM species were reported earlier from a prospective cohort of adults during 2017–2020. Out of this profile, a total of 22 M. kansasii species were subjected to drug susceptibility testing by two different methods: proportion sensitivity testing method and Sensititre testing method. RESULTS: Out of the 18 strains of M. kansasii subjected to Sensititre method of testing, the resistance pattern was demonstrated to be high for doxycycline (13) followed by rifampicin and trimethoprim/sulfamethoxazole (7). Out of the 22 strains subjected to proportion sensitivity testing method, 20 and 10 were resistant to isoniazid and ethambutol, respectively. CONCLUSION: There was a poor correlation between the treatment outcome and the resistance pattern of the antibiotics tested. With increasing numbers of NTM being reported, early and correct identification of NTM species is essential for the prompt initiation of appropriate treatment to achieve better outcome.
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Affiliation(s)
- Priya Rajendran
- Department of Bacteriology, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | | | - Vaishnavee Vijayaraghavan
- Department of Bacteriology, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Tamizhselvan Manoharan
- Department of Statistics, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Lakshana Malla Lokanathan
- Department of Clinical Research, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | - Parveen Banu Kadhar
- Department of Bacteriology, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | | | - Gomathy Sivaramakrishnan
- Department of Bacteriology, ICMR -National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
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19
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Aljowaie RM, Abdel Gawwad MR, Al Farraj DA, H JK, Rajendran P. In-vitro antimicrobial susceptibility pattern of lipopeptide against drug resistant Vibrio species. J Infect Public Health 2021; 14:1887-1892. [PMID: 34711526 DOI: 10.1016/j.jiph.2021.10.015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 09/28/2021] [Accepted: 10/08/2021] [Indexed: 11/24/2022] Open
Abstract
BACKGROUND The unrestricted application of antibiotics increased antimicrobial resistance in bacteria through horizontal gene transfer of resistant genes from the pathogenic sources and the evolution of multi-drug resistance organisms. The application of antibiotics caused severe risk to human health because animals may transmit diseases to humans. Hence, the search of novel antimicrobial agents from microbial sources is an urgent need. METHODS A lipopeptide producing stain SU05 was isolated from the pond water by serial dilution method. The lipopeptide yield was improved after optimization method and the yield was analyzed using High Performance Liquid chromatography. The influence of wheat bran (0.5%-2.5%) and rice bran (0.5%-2.5%), pH (5.5-8.5), temperature (25-40 °C) were screened to improve the production of lipopeptides by stain SU05 in submerged fermentation. Antibacterial activity of crude lipopeptide was tested against Vibrio anguillarum, Vibrio harveyi, Vibrio vulnificus, Vibrio salmonicida, Vibrio septicus, Vibrio fischeri, and Vibrio splendidus. The influence of lipopeptide on enzymes and antimicrobial property was analyzed. RESULTS Lipopeptide production was improved after nutrient supplements and optimization of physical factors. Lipopeptide showed potent activity against multi-drug resistant bacterial strains such as, V. anguillarum, V. harveyi, V. vulnificus, V. salmonicida, V. septicus, V. fischeri, and V. splendidus. Lipopeptide shows stability on various enzymes and this clearly revealed that the purified lipopeptide was highly stable in the presence of proteolytic enzymes. The findings suggest that lipopeptide SU05 characterized from the bacteria can survive at acidic environment in the intestine, and could be used to formulate fish feed. CONCLUSIONS The finding showed that the characterized lipopepties synthesized by B. amyloliquefaciens SU05 had a broad spectrum antibiotic potential against multidrug resistant Vibriosis causing bacterial pathogens. They were highly stable at broad temperature and pH ranges. These results demonstrated stability of lipopeptide at extreme conditions. The stability and activity of lipopeptide at extreme climatic condition is also useful for the application in pharmaceutical and food processing industries.
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Affiliation(s)
- Reem M Aljowaie
- Department of Botany and Microbiology, College of Sciences, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia
| | - Mohamed R Abdel Gawwad
- Genetics & Bioengineering, Faculty of Engineering and Natural Sciences, International University of Sarajevo, Bosnia and Herzegovina.
| | - Dunia A Al Farraj
- Department of Botany and Microbiology, College of Sciences, King Saud University, P.O. Box 22452, Riyadh 11495, Saudi Arabia
| | - Jose Kingsly H
- Vizhinjam Regional Centre of Central Marine Fisheries Research Institute, Vizhinjam, Thiruvananthapuram, Kerala, India.
| | - P Rajendran
- Kanyakumari Field Centre of Central Marine Fisheries Research Institute, Kanyakumari, India
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20
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Abstract
Nontuberculous mycobacteria (NTM), considered as mere contaminants, are off late, being reported as potential pathogens through various studies. The infections due to NTM range from pulmonary to extra pulmonary including skin and soft-tissue infections, traumatic and surgical wound infections, and catheter and implant-associated infections. Although extrapulmonary infections are extensively explored, pulmonary infections are scarcely reported due to their misdiagnosis as tuberculosis caused by M. tuberculosis (MTB). Appropriate detection methods are essential in order to facilitate the differential diagnosis of NTM from MTB infections. We aimed to collate the data available on NTM diagnosis and its epidemiology in India in this review. While diagnosis of MTB itself is more challenging in India, for appropriate treatment of NTM, special training and attention is needed for differential diagnosis of the former from latter. Currently, in India, in addition to the available techniques for identification of NTM, line probe assay (Hains life sciences) is proving to be a promising tool for the detection of NTM (common mycobacteria/additional species kit) and their antimicrobial resistance (Genotype NTM-DR VER 1.0). In future, with the price of sequencing steadily coming down, with proper monitoring, whole-genome sequencing could be the test of choice to predict the species, drug resistance, outbreaks in hospitals, and transmission dynamics.
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Affiliation(s)
- Priya Rajendran
- Department of Bacteriology, ICMR- National Institute for Research in Tuberculosis, Chennai, Tamil Nadu, India
| | | | - Rajesh Mondal
- Mini Unit-5, ICMR - Bhopal Memorial Hospital and Research Centre, Bhopal, Madhya Pradesh, India
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21
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Georghiou SB, Gomathi NS, Rajendran P, Nagalakshmi V, Prabakaran L, Prem Kumar MM, Macé A, Tripathy S, Ruhwald M, Schumacher SG, Penn-Nicholson A. Accuracy of the Truenat MTB-RIF Dx assay for detection of rifampicin resistance-associated mutations. Tuberculosis (Edinb) 2021; 127:102064. [PMID: 33652272 DOI: 10.1016/j.tube.2021.102064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2020] [Revised: 01/15/2021] [Accepted: 02/15/2021] [Indexed: 10/22/2022]
Affiliation(s)
| | | | - Priya Rajendran
- Indian Council for Medical Research-National Institute for Research in Tuberculosis, Chennai, India
| | - V Nagalakshmi
- Indian Council for Medical Research-National Institute for Research in Tuberculosis, Chennai, India
| | - L Prabakaran
- Foundation for Innovative New Diagnostics -India, New Delhi, India
| | - M Michel Prem Kumar
- Indian Council for Medical Research-National Institute for Research in Tuberculosis, Chennai, India
| | - Aurélien Macé
- Foundation for Innovative New Diagnostics, Geneva, Switzerland
| | - Srikanth Tripathy
- Indian Council for Medical Research-National Institute for Research in Tuberculosis, Chennai, India
| | - Morten Ruhwald
- Foundation for Innovative New Diagnostics, Geneva, Switzerland
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22
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Priya KB, Rajendran P, M. SK, J. P, Rajendran S, Kumar P, P. T, Christopher J, R. J. Pediatric and geriatric immunity network mobile computational model for COVID-19. IJPCC 2020. [DOI: 10.1108/ijpcc-06-2020-0054] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Purpose
The computational model proposed in this work uses the data's of COVID-19 cases in India. From the analysis, it can be observed that the proposed immunity model decides the recovery rate of COVID −19 patients; moreover, the recovery rate does not depend on the age of the patients. These analytic models can be used by public health professionals, hospital administrators and epidemiologists for strategic decision-making to enhance health requirements based on various demographic and social factors of those affected by the pandemic. Mobile-based computational model can be used to compute the travel history of the affected people by accessing the near geographical maps of the path traveled.
Design/methodology/approach
In this paper, the authors developed a pediatric and geriatric person’s immunity network-based mobile computational model for COVID-19 patients. As the computational model is hard to analyze mathematically, the authors simplified the computational model as general COVID-19 infected people, the computational immunity model. The model proposed in this work used the data's of COVID-19 cases in India.
Findings
This study proposes a pediatric and geriatric people immunity network model for COVID- 19 patients. For the analysis part, the data's on COVID-19 cases in India was used. In this model, the authors have taken two sets of people (pediatric and geriatric), both are facing common symptoms such as fever, cough and myalgia. From the analysis, it was observed and also proved that the immunity level of patients decides the recovery rate of COVID-19 patients and the age of COVID-19 patients has no significant influence on the recovery rate of the patient.
Originality/value
COVID-19 has created a global health crisis that has had a deep impact on the way we perceive our world and our everyday lives. Not only the rate of contagion and patterns of transmission threatens our sense of agency, but the safety measures put in place to contain the spread of the virus also require social distancing. The novel model in this work focus on the Indian scenario and thereby may help Indian health organizations for future planning and organization. The factors model in this work such as age, immunity level, recovery rate can be used by machine leaning models for predicting other useful outcomes.
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23
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Sakthivelan RG, Rajendran P, Thangavel M. A new approach to classify and rank events based videos based on Event of Detection. J Med Syst 2018; 43:13. [PMID: 30536139 DOI: 10.1007/s10916-018-1132-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Accepted: 11/29/2018] [Indexed: 10/27/2022]
Abstract
In the ongoing days, the development of sight and sound substance and information stockpiling produces colossally. Clients can extricate any kind of data they require from recordings. This outcomes in quick development of video information, client's discover complexity while procurement their important data. To address this, EBR (Event Based Ranking) propose another way to deal with group and rank mixed media occasions based recordings as per client's advantage. Clients are generally keen on the best positioned and occasion pertinent recordings of returned query output. An occasion based positioning methodology which empowers clients to iteratively peruse the video as per their inclination. The proposed conspire has new way to deal with order and rank occasions based recordings. It improves the exactness of video recovery which incorporates certain functionalities for customized look. The data of clients' input is used in re-positioning technique to additionally enhance the recovering exactness. It gives the customized lastly re-positioned pertinent outcomes to shape a brought together precise query output. EBR is more precise in foreseeing and positioning client particular inclinations and diminishes the time many-sided quality. This Paper proposed a calculation comprises of: video rank calculation, occasion term suggestion, and client criticism and client session.
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Affiliation(s)
- R G Sakthivelan
- Department of CSE, AVS Engineering College, Salem, Tamil Nadu, India.
| | - P Rajendran
- Department of CSE, Knowledge Institute of Technology, Kakapalayam, Tamil Nadu, India
| | - M Thangavel
- Department of ECE, Knowledge Institute of Technology, Kakapalayam, Tamil Nadu, India
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24
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Sasikumar D, Rajendran P. Identification of Uterine Fibroids using Enhanced Image Mining Techniques: Bio-Inspired Xenogenetic Based Extreme Learning Neural Network Classification with Improved Fireflies Hausdorff Distance. Curr Med Imaging 2018. [DOI: 10.2174/1573405613666170502104715] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- D. Sasikumar
- Department of Computer Science and Engineering, Knowledege Institute of Technology, Kiot Campus, Salem-637 504, Tamil Nadu, India
| | - P. Rajendran
- Department of Computer Science and Engineering, Knowledege Institute of Technology, Kiot Campus, Salem-637 504, Tamil Nadu, India
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25
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Rajan RR, Muddappa SC, Rajendran P, Sukumaran Nair A. Management of Cervically Fractured Central Incisors: A Multidisciplinary Approach. Open Dent J 2018; 12:238-245. [PMID: 29760816 PMCID: PMC5897962 DOI: 10.2174/1874210601812010238] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2017] [Revised: 02/25/2018] [Accepted: 03/14/2018] [Indexed: 11/22/2022] Open
Abstract
Introduction: Fracture of tooth structure at or below the gingival margin compromises rehabilitation and hampers esthetics and function. Management: Management of such cases by a post-core and crown restoration, or periodontal surgery or orthodontic extrusion alone may not always suffice in attaining a good result. Case Report: A multi-disciplinary approach which includes all of the above mentioned procedures helps in long term success. Conclusion: Careful case evaluation, treatment planning and meticulous attention to detail are the keys to the best treatment outcome.
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Affiliation(s)
- Rakesh R Rajan
- Amrita School of Dentistry, Amrita University, Aims Campus, Kochi - Conservative Dentistry & Endodontics, Ernakulam, Kerala, India
| | - Sapna Chandira Muddappa
- Amrita School of Dentistry, Amrita University, Aims Campus, Kochi - Conservative Dentistry & Endodontics, Ernakulam, Kerala, India
| | - Priya Rajendran
- Department of Conservative Dentistry & Endodontics, Malabar Dental College, Malapuram, Kerala, India
| | - Ashok Sukumaran Nair
- Amrita School of Dentistry, Amrita University, Aims Campus, Kochi - Conservative Dentistry & Endodontics, Ernakulam, Kerala, India
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Rajendran P, Devaraju A. Experimental Evaluation of Mechanical and Tribological Behaviours of Gas Nitride treated AISI 316LN Austenitic Stainless Steel. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.matpr.2018.03.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Narahari SR, Aggithaya MG, Moffatt C, Ryan TJ, Keeley V, Vijaya B, Rajendran P, Karalam SB, Rajagopala S, Kumar NK, Bose KS, Sushma KV. Future Research Priorities for Morbidity Control of Lymphedema. Indian J Dermatol 2017; 62:33-40. [PMID: 28216723 PMCID: PMC5286751 DOI: 10.4103/0019-5154.198039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Background: Innovation in the treatment of lower extremity lymphedema has received low priority from the governments and pharmaceutical industry. Advancing lymphedema is irreversible and initiates fibrosis in the dermis, reactive changes in the epidermis and subcutis. Most medical treatments offered for lymphedema are either too demanding with a less than satisfactory response or patients have low concordance due to complex schedules. A priority setting partnership (PSP) was established to decide on the future priorities in lymphedema research. Methods: A table of abstracts following a literature search was published in workshop website. Stake holders were requested to upload their priorities. Their questions were listed, randomized, and sent to lymphologists for ranking. High ranked ten research priorities, obtained through median score, were presented in final prioritization work shop attended by invited stake holders. A free medical camp was organized during workshop to understand patients’ priorities. Results: One hundred research priorities were selected from priorities uploaded to website. Ten priorities were short listed through a peer review process involving 12 lymphologists, for final discussion. They were related to simplification of integrative treatment for lymphedema, cellular changes in lymphedema and mechanisms of its reversal, eliminating bacterial entry lesions to reduce cellulitis episodes, exploring evidence for therapies in traditional medicine, improving patient concordance to compression therapy, epidemiology of lymphatic filariasis (LF), and economic benefit of integrative treatments of lymphedema. Conclusion: A robust research priority setting process, organized as described in James Lind Alliance guidebook, identified seven priority areas to achieve effective morbidity control of lymphedema including LF. All stake holders including Department of Health Research, Government of India, participated in the PSP.
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Affiliation(s)
- S R Narahari
- Institute of Applied Dermatology, Central University of Kerala, Kasaragod, Kerala, India
| | | | - Christine Moffatt
- International Lymphoedema Framework, London; Division of Nursing and Healthcare, Faculty of Medicine, University of Nottingham, Nottingham, United Kingdom
| | - T J Ryan
- Department of Dermatology, Churchill Hospital, Oxford, United Kingdom
| | - Vaughan Keeley
- Department of Lymphedema, Royal Derby Hospital, Derby, United Kingdom
| | - B Vijaya
- Department of Pathology, JSS Medical College, JSS University, Mysore, Karnataka, India
| | - P Rajendran
- Department of Biochemistry and Molecular Biology, Central University of Kerala, Kasaragod, Kerala, India
| | - S B Karalam
- Department of R&D, Oushadhi Ltd, Thrissur, Kerala, India
| | - S Rajagopala
- Department of Kaumarabhritya, Institute for Postgraduate Teaching and Research in Ayurveda, Jamnagar, Gujarat, India
| | - N K Kumar
- Dr. TMA Pai Endowment Chair, Manipal University, Indian Council for Medical Research, Chennai, Tamil Nadu, India
| | - K S Bose
- Institute of Applied Dermatology, Central University of Kerala, Kasaragod, Kerala, India
| | - K V Sushma
- Institute of Applied Dermatology, Central University of Kerala, Kasaragod, Kerala, India
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Joyee AG, Thyagarajan SP, Rajendran P, Hari R, Balakrishnan P, Jeyaseelan L, Kurien T. Chlamydia trachomatis genital infection in apparently healthy adult population of Tamil Nadu, India: a population-based study. Int J STD AIDS 2016; 15:51-5. [PMID: 14769173 DOI: 10.1258/095646204322637272] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Since the epidemiology of Chlamydia trachomatis infection in apparently healthy population has not been studied in India, a population-based study was conducted in the state of Tamil Nadu, India in order to analyse the prevalence of genital chlamydial infections in the community and to implement control programmes. A representative sample was taken from three randomly selected districts by using the 'probability proportional to size' cluster survey method. Households were the basic units of clusters. Adults aged 15-45 years, pre-identified from the selected households were enrolled during the medical camps conducted for a major study on community prevalence of sexually transmitted diseases in Tamil Nadu. Blood and urine samples collected from the study subjects were tested by enzyme-linked immunosorbent assay (ELISA) for anti-chlamydial IgM antibodies and by the commercial Amplicor polymerase chain reaction (PCR) test for chlamydial DNA. The prevalence of anti- C. trachomatis antibodies determined by IgM-ELISA was 2.4% (95% CI 1.6%-3.2%). The prevalence of genital chlamydial infection determined by PCR was 1.1% (95% CI 0.5%-1.7%). Majority of the detected infections (68.8%) were asymptomatic. This is the first Indian report on the prevalence of genital chlamydial infections in the general population. It is concluded that this study provides evidence for a substantial burden of approximately 10 million asymptomatic genital chlamydial infection cases in the sexually active age groups in the general population of India.
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Affiliation(s)
- A G Joyee
- Department of Microbiology, Dr. ALM Post Graduate Institute of Basic Medical Sciences, University of Madras, Taramani, Chennai, India 600 113
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Rekha CB, Krishnaveni G, Rajendran P, Anandan R, Elakkiya M. In Vitro Antidermatophytic Study on Leaf Extracts of Azadirachta indica and Andrographis paniculata against Trichophyton Species. ACTA ACUST UNITED AC 2016. [DOI: 10.20546/ijcmas.2016.505.064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Chandrakar K, Venkateshwara Rao P, Rajendran P, Satyanarayana C. Dynamic Analysis of HSDB System and Evaluation of Boundary Non-linearity through Experiments. DEFENCE SCI J 2016. [DOI: 10.14429/dsj.66.8936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
<p class="FAIMTextBody">This paper deals with mechanical design and development of high speed digital board (HSDB) system which consists of printed circuit board (PCB) with all electronic components packaged inside the cavity for military application. The military environment poses a variety of extreme dynamic loading conditions, namely, quasi static, vibration, shock and acoustic loads that can seriously degrade or even cause failure of electronics. The vibrational requirement for the HSDB system is that the natural frequency should be more than 200 Hz and sustain power spectrum density of 14.8 Grms in the overall spectrum. Structural integrity of HSDB is studied in detail using finite element analysis (FEA) tool against the dynamic loads and configured the system. Experimental vibration tests are conducted on HSDB with the help of vibration shaker and validated the FE results. The natural frequency and maximum acceleration response computed from vibration tests for the configured design were found. The finite element results show a good correlation with the experiment results for the same boundary conditions. In case of fitment scenario of HSDB system, it is observed that the influence of boundary non-linearity during experiments. This influence of boundary non-linearity is evaluated to obtain the closeout of random vibration simulation results.</p>
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Nagarajan N, Gunasekaran P, Rajendran P. Reply to comment by Ho on "genetic characterization, nickel tolerance, biosorption, kinetics, and uptake mechanism of a bacterium isolated from electroplating industrial effluent". Can J Microbiol 2015; 61:883. [PMID: 26418949 DOI: 10.1139/cjm-2015-0495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- N Nagarajan
- a Department of Zoology, Vivekananda College, Tiruvedakam, Madurai - 625 234, Tamil Nadu, India
| | - P Gunasekaran
- b Department of Genetics, School of Biological Sciences, Madurai Kamaraj University, Madurai - 625 021, Tamil Nadu, India
| | - P Rajendran
- a Department of Zoology, Vivekananda College, Tiruvedakam, Madurai - 625 234, Tamil Nadu, India
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Anbarasi M, Rajkumar G, Krishnakumar S, Rajendran P, Venkatesan R, Dinesh T, Mohan J, Venkidusamy S. Learning style-based teaching harvests a superior comprehension of respiratory physiology. Adv Physiol Educ 2015; 39:214-217. [PMID: 26330041 DOI: 10.1152/advan.00157.2014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Students entering medical college generally show vast diversity in their school education. It becomes the responsibility of teachers to motivate students and meet the needs of all diversities. One such measure is teaching students in their own preferred learning style. The present study was aimed to incorporate a learning style-based teaching-learning program for medical students and to reveal its significance and utility. Learning styles of students were assessed online using the visual-auditory-kinesthetic (VAK) learning style self-assessment questionnaire. When respiratory physiology was taught, students were divided into three groups, namely, visual (n = 34), auditory (n = 44), and kinesthetic (n = 28), based on their learning style. A fourth group (the traditional group; n = 40) was formed by choosing students randomly from the above three groups. Visual, auditory, and kinesthetic groups were taught following the appropriate teaching-learning strategies. The traditional group was taught via the routine didactic lecture method. The effectiveness of this intervention was evaluated by a pretest and two posttests, posttest 1 immediately after the intervention and posttest 2 after a month. In posttest 1, one-way ANOVA showed a significant statistical difference (P=0.005). Post hoc analysis showed significance between the kinesthetic group and traditional group (P=0.002). One-way ANOVA showed a significant difference in posttest 2 scores (P < 0.0001). Post hoc analysis showed significance between the three learning style-based groups compared with the traditional group [visual vs. traditional groups (p=0.002), auditory vs. traditional groups (p=0.03), and Kinesthetic vs. traditional groups (p=0.001)]. This study emphasizes that teaching methods tailored to students' style of learning definitely improve their understanding, performance, and retrieval of the subject.
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Affiliation(s)
- M Anbarasi
- Department of Physiology, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India;
| | - G Rajkumar
- Department of Paediatrics, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India; and
| | - S Krishnakumar
- Department of Physiology, Chennai Medical College Hospital and Research Center, Trichy, Tamilnadu, India
| | - P Rajendran
- Department of Physiology, Chennai Medical College Hospital and Research Center, Trichy, Tamilnadu, India
| | - R Venkatesan
- Department of Physiology, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India
| | - T Dinesh
- Department of Physiology, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India
| | - J Mohan
- Department of Physiology, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India
| | - S Venkidusamy
- Department of Physiology, Dhanalakshmi Srinivasan Medical College and Hospital, Perambalur, Tamilnadu, India
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Rajendran P, Kang G. Molecular epidemiology of rotavirus in children and animals and characterization of an unusual G10P[15] strain associated with bovine diarrhea in south India. Vaccine 2015; 32 Suppl 1:A89-94. [PMID: 25091687 DOI: 10.1016/j.vaccine.2014.03.026] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Rotaviruses are enteric pathogens causing acute, watery, dehydrating diarrhea in various host species, including birds and mammals. This study collected data on the disease burden and strain prevalence of Group A rotavirus in animals and humans in Vellore and investigated interspecies transmission by comparison of circulating genotypes. Stool samples from children aged less than 5 years, admitted to the hospital between January 2003 and May 2006 for diarrhea and diarrheal samples from animals that were collected from a veterinary clinic and several dairy farms near Vellore between February 2007 and May 2008 were processed and subjected to RNA extraction and reverse-transcription PCR for genotyping of VP7 and VP4. Of 394 children with diarrhea, 158 (40%) were positive for rotavirus and the common G types identified were G1 (47, 29.7%), G2 (43, 27.2%), G9 (22, 13.9%), G10 (2, 1.2%), G12 (1, 0.6%) and mixed infections (27, 17.8%). The common P types were P[4] accounting for 57 (36%) samples, P[8] 57 (36%), P[11] 3 (1.8%) and P[6] 2 (1.2%). Of 627 animals, 35 (1 bullock, 2 goats, 32 cows) were found to be infected with rotavirus (5.5%). The common G types identified in order of frequency were G6 (17, 48.5%), G2 (10, 28%), G10 (4, 11%), G8 (2, 5.7%) and mixed infections (2, 5.7%). The common P types were P[6] accounting for 16 (46%) samples, P[4] 7 (20%), P[1] 3 (8.5%) and P[8] 3 (8.5%). An unusual P type P[15] was seen in one sample in combination with G10. The finding of G2 infections which are rarely identified in animals implies anthroponotic transmission since this genotype is predominantly associated with infection in humans.
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Affiliation(s)
- Priya Rajendran
- The Wellcome Trust Research Laboratory, Division of Gastrointestinal Sciences, Christian Medical College, Vellore, TN, India
| | - Gagandeep Kang
- The Wellcome Trust Research Laboratory, Division of Gastrointestinal Sciences, Christian Medical College, Vellore, TN, India.
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Nagarajan N, Gunasekaran P, Rajendran P. Genetic characterization, nickel tolerance, biosorption, kinetics, and uptake mechanism of a bacterium isolated from electroplating industrial effluent. Can J Microbiol 2015; 61:297-306. [PMID: 25768053 DOI: 10.1139/cjm-2014-0504] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Electroplating industries in Madurai city produce approximately 49,000 L of wastewater and 1200 L of sludge every day revealing 687-5569 ppm of nickel (Ni) with other contaminants. Seventeen Ni-tolerant bacterial strains were isolated from nutrient-enriched effluents. Among them one hyper Ni accumulating strain was scored and identified as Bacillus cereus VP17 on the basis of morphology, biochemical tests, 16S rDNA gene sequencing, and phylogenetic analysis. Equilibrium data of Ni(II) ions using the bacterium as sorbent at isothermal conditions (37 °C) and pH 6 were best adjusted by Langmuir (R(2) = 0.6268) and Freundlich models (R(2) = 0.9505). Experimental validation reveals Ni sorption takes place on a heterogeneous surface of the biosorbent, and predicted metal sorption capacity is 434 ppm. The pseudo-second-order kinetic model fitted the biosorption kinetic data better than the pseudo-first-order kinetic model (R(2) = 0.9963 and 0.3625). Scanning electron microscopy, energy dispersive X-ray, and Fourier transform infrared spectroscopy studies of the bacterial strain with and without Ni(II) ion reveals the biosorption mechanism. The results conclude possibilities of using B. cereus VP17 for Ni bioremediation.
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Affiliation(s)
- N Nagarajan
- Department of Zoology, Vivekananda College, Tiruvedakam, Madurai - 625 234, Tamil Nadu, India
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Karuppasamy P, Thiruppathi D, Vijaya Sundar J, Rajapandian V, Ganesan M, Rajendran T, Rajagopal S, Nagarajan N, Rajendran P, Sivasubramanian VK. Spectral, Computational, Electrochemical and Antibacterial Studies of Iron(III)–Salen Complexes. Arab J Sci Eng 2015. [DOI: 10.1007/s13369-015-1599-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Yew KL, Ooi PS, Rajendran P, Razali F, Anum A, Yeo J, Sim P, Steven A. The entrapped and unravelled coronary wire. Med J Malaysia 2014; 69:224-226. [PMID: 25638236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
No abstract available.
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Affiliation(s)
- K L Yew
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia.
| | - P S Ooi
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia
| | - P Rajendran
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia
| | - F Razali
- Sarawak General Hospital, Kuching, Malaysia
| | - A Anum
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia
| | - J Yeo
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia
| | - P Sim
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia
| | - A Steven
- Sarawak General Hospital, Kuching, Malaysia
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Yew KL, Go CS, Razali F, Rajendran P, Ooi PS, Anum A. Methamphetamine-associated reversible cardiomyopathy and stroke risk. Eur Rev Med Pharmacol Sci 2014; 18:2403-2404. [PMID: 25268081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Affiliation(s)
- K L Yew
- Sarawak General Hospital Heart Center, Kota Samarahan, Sarawak, Malaysia.
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Mukhopadhya I, Sarkar R, Menon VK, Babji S, Paul A, Rajendran P, Sowmyanarayanan TV, Moses PD, Iturriza-Gomara M, Gray JJ, Kang G. Rotavirus shedding in symptomatic and asymptomatic children using reverse transcription-quantitative PCR. J Med Virol 2013; 85:1661-8. [PMID: 23775335 DOI: 10.1002/jmv.23641] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/04/2013] [Indexed: 11/09/2022]
Abstract
Reverse transcription-real-time polymerase chain reaction (RT-qPCR) for the VP6 gene was used to study group A rotavirus shedding in children with symptomatic and asymptomatic rotavirus infection. Sequential stool samples (n = 345) from 10 children with rotavirus associated diarrhea and from five children (n = 161) with asymptomatic rotavirus infection were collected over a period of 2 months. A RT-qPCR assay on the samples using a rotavirus VP6 plasmid standard demonstrated high reproducibility, with an inter-assay coefficient of variation (CV) of 1.40-2.97% and an intra-assay CV of 0.03-3.03%. The median duration of shedding was longer in children with diarrhea compared to asymptomatic children (24 days vs. 18 days; P = 0.066). The median quantitation cycle (C(q)) at presentation in symptomatic children was 17.21 compared to 30.98 in asymptomatic children (P = 0.086). The temporal pattern in symptomatic children consisted of a high initial viral shedding coinciding with the duration of diarrhea, followed by a rapid fall, and then a small increase in secondary shedding 21 days later. Compared to children with rotavirus diarrhea, those with asymptomatic infection shed lower quantities of virus throughout the observation period. No difference was noted between the G and P genotypes of samples collected at onset of infection and during the shedding period. Shedding was intermittent in a subset of children in both groups. RT-qPCR is a useful method to characterize shedding patterns.
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Affiliation(s)
- Indrani Mukhopadhya
- Department of Gastrointestinal Sciences, Christian Medical College, Vellore, Tamil Nadu, India
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Rajendran P, Babji S, George AT, Rajan DP, Kang G, Ajjampur SS. Detection and species identification of Campylobacter in stool samples of children and animals from Vellore, south India. Indian J Med Microbiol 2012; 30:85-8. [PMID: 22361767 DOI: 10.4103/0255-0857.93049] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Campylobacter spp. are an important cause of bacterial gastroenteritis frequently isolated from animal, poultry and environmental samples. In this study, we investigated the zoonotic potential of Campylobacter spp. by comparing prevalence rates and species in 394 children with diarrhoea and 652 animals in Vellore using PCR-based tools. Eighteen children (4.5%) had campylobacteriosis, a majority of whom had co-pathogens (15/18) and most were infected with Campylobacter jejuni (16/18). A few C. coli and mixed infections with both species were also seen. Among the animal samples, 16/25 chicken samples (64%) were positive and all were found to be C. jejuni.
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Affiliation(s)
- P Rajendran
- Department of Gastrointestinal Sciences, Christian Medical College, Vellore - 632 004, Tamil Nadu, India
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Sharma H, Wong C, El-Bakry A, Hakeem A, Rajendran P, Mehra S, Hammad A, Sharma A. Uncontrolled donation after cardiac death: potential for future. Am J Transplant 2012; 12:1660; author reply 1661. [PMID: 22500931 DOI: 10.1111/j.1600-6143.2012.04040.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Holtz LR, Bauer IK, Rajendran P, Kang G, Wang D. Astrovirus MLB1 is not associated with diarrhea in a cohort of Indian children. PLoS One 2011; 6:e28647. [PMID: 22174853 PMCID: PMC3235140 DOI: 10.1371/journal.pone.0028647] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Accepted: 11/11/2011] [Indexed: 01/07/2023] Open
Abstract
Astroviruses are a known cause of human diarrhea. Recently the highly divergent astrovirus MLB1 (MLB1) was identified in a stool sample from a patient with diarrhea. It has subsequently been detected in stool from individuals with and without diarrhea. To determine whether MLB1 is associated with diarrhea, we conducted a case control study of MLB1. In parallel, the prevalence of the classic human astroviruses (HAstVs) was also determined in the same case control cohort. 400 cases and 400 paired controls from a longitudinal birth cohort in Vellore, India were analyzed by RT-PCR. While HAstVs were associated with diarrhea (p = 0.029) in this cohort, MLB1 was not; 14 of the controls and 4 cases were positive for MLB1. Furthermore, MLB1 viral load did not differ significantly between the cases and controls. The role of MLB1 in human health still remains unknown and future studies are needed.
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Affiliation(s)
- Lori R Holtz
- Department of Pediatrics, Washington University School of Medicine, St Louis, Missouri, United States of America
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Rajendran P, Ajjampur SSR, Chidambaram D, Kattula D, Rajan DP, Ward H, Kang G. Investigation of potential zoonotic transmission of cryptosporidiosis in southern India. Am J Trop Med Hyg 2011; 85:657-9. [PMID: 21976568 DOI: 10.4269/ajtmh.2011.10-0673] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
The common species and subgenotypes causing cryptosporidiosis were studied in 394 children and 627 animals with diarrhea in Vellore in southern India. Although no zoonotic strains were identified in 13 infected children, 1 of 12 infected animals had C. hominis, indicating the potential for cross-species transmission. This study also reports C. xiaoi for the first time in India.
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Affiliation(s)
- Priya Rajendran
- Department of Gastrointestinal Sciences, Christian Medical College, Vellore, India.
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Santhiyakumari N, Rajendran P, Madheswaran M, Suresh S. Detection of the intima and media layer thickness of ultrasound common carotid artery image using efficient active contour segmentation technique. Med Biol Eng Comput 2011; 49:1299-310. [DOI: 10.1007/s11517-011-0800-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2010] [Accepted: 07/02/2011] [Indexed: 11/29/2022]
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Rajendran P, Varghese NOO, Varughese JM, Murugaian E. Evaluation, using extracted human teeth, of Ricetral as a storage medium for avulsions - an in vitro study. Dent Traumatol 2011; 27:217-20. [DOI: 10.1111/j.1600-9657.2011.00988.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Krishnan P, Rajendran P, Sambandan AP, Anitha C, Chavda RK, Khobragade KJ. Evaluation of coamoxiclav and other antibiotics against S pneumoniae and H influenae from paediatric cases of acute respiratory infections. J Indian Med Assoc 2011; 109:241-244. [PMID: 22187795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Streptococcus pneumoniae and Haemophilus influenzae are most important respiratory pathogens with increasing antimicrobial resistance among the key pathogens responsible for community-acquired respiratory tract infections and have the potential to limit the effectiveness of antibiotics available to treat these infections. In the present study, a total of 18 isolates of Streptococcus pneumoniae and 9 isolates of Haemophilus influenzae were characterised from specimens obtained from patients of acute respiratory tract infections including otitis media, tonsillitis, bronchitis, pneumonia and sinusitis. In the present study, all the Streptococcus pneumoniae isolates were sensitive to coamoxiclav and to cefixime, while they showed variable resistance to the other antibiotics screened. The degree of resistance to various antibiotics was as follows: Streptococcus pneumoniae showed resistance to cotrimoxazole (66.7%), azithromycin (55.6%), erythromycin (16.7%), chloramphenicol (16.7%), clindamycin (11.1%) and penicillin (11.1%). Haemophilus influenzae showed resistance to cefixime 100%, chloramphenicol 88.9%, penicillin 77.8%, erythromycin 77.8%, cefuroxime 77.8%, azithromycin 77.8%, and clindamycin 11.1%. The present study showed the emergence of variable resistance to penicillin, cotrimoxazole and other antibiotics.
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Affiliation(s)
- Padma Krishnan
- Department of Microbiology, Dr ALM Postgraduate Institute of Basic Medical Science, University of Madras, Chennai 600113
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Ickinger C, Musenge E, Tikly M, Barnes J, Donnison C, Scott M, Bartholomew P, Rynne M, Hamilton J, Saravanan V, Heycock C, Kelly C, de la Torre I, Moura RA, Leandro M, Edwards J, Cambridge G, de la Torre I, Leandro M, Edwards J, Cambridge G, Daniels LE, Gullick NJ, Rees JD, Kirkham BW, Daniels LE, Gullick NJ, Kirkham BW, Rees J, Scott IC, Johnson D, Scott DL, Kingsley G, Ma MH, Cope AP, Scott DL, Kirkham BW, Brode S, Nisar MK, Ostor AJ, Gullick NJ, Oakley SP, Rees JD, Jones T, Mistlin A, Panayi GS, Kirkham BW, El Miedany Y, Palmer D, Porkodi R, Rajendran P, Waller R, Williamson L, Collins D, Price E, Juarez MJ, El Miedany Y, El Gaafary M, Youssef S, Palmer D, El Miedany Y, El Gaafary M, Palmer D, El Miedany Y, El Gaafary M, Palmer D, El Miedany Y, Palmer D, Cramp F, Hewlett S, Almeida C, Kirwan J, Choy E, Chalder T, Pollock J, Christensen R, Mirjafari H, Verstappen S, Bunn D, Edlin H, Charlton-Menys V, Pemberton P, Marshall T, Wilson P, Lunt M, Symmons D, Bruce IN, Bell C, Rowe IF, Jayakumar K, Norton SJ, Dixey J, Williams P, Young A, Kurunadalingam H, Parwaiz I, Kumar K, Howlett K, Hands B, Raza K, Pitzalis C, Buckley C, Kelly S, Filer A, Wheater G, Hogan VE, Onno Teng Y, Tekstra J, Tuck SP, Lafeber FP, Huizinga TW, Bijlsma JW, Francis RM, Datta HK, van Laar J, Pratt AG, Charles PJ, Choudhury M, Wilson G, Venables PJ, Isaacs J, Raza K, Kumar K, Stack R, Kwiatkowska B, Rantapaa-Dahlqvist S, Saxne T, Sidiropoulos P, Kteniadaki E, Misirlaki C, Mann H, Vencovsky J, Ciurea A, Tamborrini G, Kyburz D, Bastian H, Burmester GR, Detert J, Buckley CD, Sheehy C, Shipman A, Stech I, Mukhtyar C, Atzeni F, Sitia S, Tomasoni L, Gianturco L, Ricci C, Sarzi-Puttini P, De Gennaro Colonna V, Turiel M, Galloway J, Low A, Mercer LK, Dixon W, Ustianowski A, Watson K, Lunt M, Fisher B, Plant D, Lundberg K, Charles PJ, Barton A, Venables P, Pratt AG, Lorenzi AR, Wilson G, Platt PN, Isaacs J. Rheumatoid arthritis - clinical aspects: 134. Predictors of Joint Damage in South Africans with Rheumatoid Arthritis. Rheumatology (Oxford) 2011. [DOI: 10.1093/rheumatology/ker029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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48
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Rajendran P, Ajjampur SSR, Chidambaram D, Chandrabose G, Thangaraj B, Sarkar R, Samuel P, Rajan DP, Kang G. Pathotypes of diarrheagenic Escherichia coli in children attending a tertiary care hospital in South India. Diagn Microbiol Infect Dis 2011; 68:117-22. [PMID: 20846583 DOI: 10.1016/j.diagmicrobio.2010.06.003] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2010] [Revised: 05/29/2010] [Accepted: 06/05/2010] [Indexed: 11/19/2022]
Abstract
The prevalence of diarrheagenic Escherichia coli (DEC) in children under 5 years was studied in children with diarrhea and controls in South India. Four polymerase chain reaction (PCR) "schemes" were used to detect genes of the 6 pathotypes of DEC. In 394 children with diarrhea, 203 (52%) DEC infections were found. Among the 198 controls, 126 (63%) DEC infections were found. Enteroaggregative E. coli was the most common pathotype by multiplex PCR both in cases (58, 14.7%) and controls (47, 23.7%), followed by enteropathogenic E. coli seen in 10% cases and 8% of controls. Enterotoxigenic E. coli (ETEC), enterohemorrhagic E. coli (EHEC), enteroinvasive E. coli (EIEC), and diffusely adherent E. coli (DAEC) were found in 4.1%, 2.0%, 1.0%, and 0.5% of cases, respectively. ETEC was found in 2.5% of controls, but EHEC, EIEC, and DAEC were not detected. Overall, no single assay worked well, but by discounting genes with a pathogenicity index of less than 1, it was possible to use the PCR assays to identify DEC in 75/394 (19%) cases and 12/198 (6.1%) controls, while mixed infection could be identified in 8/394 (2%) cases and 2/198 (1%) controls.
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Affiliation(s)
- Priya Rajendran
- Department of Gastrointestinal Sciences, Christian Medical College, Vellore, India
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49
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Rajendran P, Madheswaran M. An improved brain image classification technique with mining and shape prior segmentation procedure. J Med Syst 2010; 36:747-64. [PMID: 20703655 DOI: 10.1007/s10916-010-9542-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2010] [Accepted: 06/06/2010] [Indexed: 10/19/2022]
Abstract
The shape prior segmentation procedure and pruned association rule with ImageApriori algorithm has been used to develop an improved brain image classification system are presented in this paper. The CT scan brain images have been classified into three categories namely normal, benign and malignant, considering the low-level features extracted from the images and high level knowledge from specialists to enhance the accuracy in decision process. The experimental results on pre-diagnosed brain images showed 97% sensitivity, 91% specificity and 98.5% accuracy. The proposed algorithm is expected to assist the physicians for efficient classification with multiple key features per image.
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Affiliation(s)
- P Rajendran
- Department of Computer Science and Engineering, K. S. Rangasamy College of Technology, Tamilnadu, India.
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50
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Finkbeiner SR, Holtz LR, Jiang Y, Rajendran P, Franz CJ, Zhao G, Kang G, Wang D. Human stool contains a previously unrecognized diversity of novel astroviruses. Virol J 2009; 6:161. [PMID: 19814825 PMCID: PMC2765957 DOI: 10.1186/1743-422x-6-161] [Citation(s) in RCA: 134] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2009] [Accepted: 10/08/2009] [Indexed: 11/10/2022] Open
Abstract
Human astroviruses are a leading cause of gastrointestinal disease. Since their discovery in 1975, 8 closely related serotypes have been described in humans, and more recently, two new astrovirus species, astrovirus MLB1 and astrovirus VA1, were identified in diarrhea patients. In this study, we used consensus astrovirus primers targeting the RNA polymerase to define the diversity of astroviruses present in pediatric patients with diarrhea on two continents. From 416 stool specimens comprising two different cohorts from Vellore, India, 35 samples were positive. These positive samples were analyzed further by either sequencing of the approximately 400 bp amplicon generated by the consensus PCR or by performing additional RT-PCR specific for individual astroviruses. 19 samples contained the classic human astrovirus serotypes 1-8 while 7 samples were positive for the recently described astrovirus MLB1. Strikingly, from samples that were positive in the consensus PCR screen but negative in the specific PCR assays, five samples contained sequences that were highly divergent from all previously described astroviruses. Sequence analysis suggested that three novel astroviruses, tentatively named astroviruses VA2, MLB2 and VA3, were present in these five patient specimens (AstV-VA2 in 2 patients, AstV-MLB2 in 2 patients and AstV-VA3 in one patient). Using the same RT-PCR screening strategy, 13 samples out of 466 tested stool specimens collected in St. Louis, USA were positive. Nine samples were positive for the classic human astroviruses. One sample was positive for AstV-VA2, and 3 samples were positive for AstV-MLB2 demonstrating that these two viruses are globally widespread. Collectively, these findings underscore the tremendous diversity of astroviruses present in fecal specimens from diarrhea patients. Given that a significant fraction of diarrhea etiologies is currently unknown, it is plausible that these or other yet unrecognized astroviruses may be responsible for at least part of the undiagnosed cases.
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Affiliation(s)
- Stacy R Finkbeiner
- Department of Molecular Microbiology and Pathology, Washington University School of Medicine, St Louis, MO, USA.
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