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Kumari N, Mishra GP, Dikshit HK, Gupta S, Roy A, Sinha SK, Mishra DC, Das S, Kumar RR, Nair RM, Aski M. Identification of quantitative trait loci (QTLs) regulating leaf SPAD value and trichome density in mungbean ( Vigna radiata L.) using genotyping-by-sequencing (GBS) approach. PeerJ 2024; 12:e16722. [PMID: 38406271 PMCID: PMC10893866 DOI: 10.7717/peerj.16722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 12/04/2023] [Indexed: 02/27/2024] Open
Abstract
Quantitative trait loci (QTL) mapping is used for the precise localization of genomic regions regulating various traits in plants. Two major QTLs regulating Soil Plant Analysis Development (SPAD) value (qSPAD-7-1) and trichome density (qTric-7-2) in mungbean were identified using recombinant inbred line (RIL) populations (PMR-1×Pusa Baisakhi) on chromosome 7. Functional analysis of QTL region identified 35 candidate genes for SPAD value (16 No) and trichome (19 No) traits. The candidate genes regulating trichome density on the dorsal leaf surface of the mungbean include VRADI07G24840, VRADI07G17780, and VRADI07G15650, which encodes for ZFP6, TFs bHLH DNA-binding superfamily protein, and MYB102, respectively. Also, candidate genes having vital roles in chlorophyll biosynthesis are VRADIO7G29860, VRADIO7G29450, and VRADIO7G28520, which encodes for s-adenosyl-L-methionine, FTSHI1 protein, and CRS2-associated factor, respectively. The findings unfolded the opportunity for the development of customized genotypes having high SPAD value and high trichome density having a possible role in yield and mungbean yellow vein mosaic India virus (MYMIV) resistance in mungbean.
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Affiliation(s)
- Nikki Kumari
- Genetics, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | | | | | - Soma Gupta
- Genetics, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Anirban Roy
- Plant Pathology, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Subodh Kumar Sinha
- Biotechnology, National Institute of Plant Biotechnology, New Delhi, Delhi, India
| | - Dwijesh C. Mishra
- Agricultural Bioinformatics, Indian Agricultural Statistics Research Institute, New Delhi, Delhi, India
| | - Shouvik Das
- Genetics, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Ranjeet R. Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | | | - Muraleedhar Aski
- Genetics, Indian Agricultural Research Institute, New Delhi, Delhi, India
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Kohli M, Bansal H, Mishra GP, Dikshit HK, Reddappa SB, Roy A, Sinha SK, Shivaprasad K, Kumari N, Kumar A, Kumar RR, Nair RM, Aski M. Genome-wide association studies for earliness, MYMIV resistance, and other associated traits in mungbean ( Vigna radiata L. Wilczek) using genotyping by sequencing approach. PeerJ 2024; 12:e16653. [PMID: 38288464 PMCID: PMC10823994 DOI: 10.7717/peerj.16653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 11/20/2023] [Indexed: 02/01/2024] Open
Abstract
Yellow mosaic disease (YMD) remains a major constraint in mungbean (Vigna radiata (L.)) production; while short-duration genotypes offer multiple crop cycles per year and help in escaping terminal heat stress, especially during summer cultivation. A comprehensive genotyping by sequencing (GBS)-based genome-wide association studies (GWAS) analysis was conducted using 132 diverse mungbean genotypes for traits like flowering time, YMD resistance, soil plant analysis development (SPAD) value, trichome density, and leaf area. The frequency distribution revealed a wide range of values for all the traits. GBS studies identified 31,953 high-quality single nucleotide polymorphism (SNPs) across all 11 mungbean chromosomes and were used for GWAS. Structure analysis revealed the presence of two genetically distinct populations based on ΔK. The linkage disequilibrium (LD) varied throughout the chromosomes and at r2 = 0.2, the mean LD decay was estimated as 39.59 kb. Two statistical models, mixed linear model (MLM) and Bayesian-information and Linkage-disequilibrium Iteratively Nested Keyway (BLINK) identified 44 shared SNPs linked with various candidate genes. Notable candidate genes identified include FPA for flowering time (VRADI10G01470; chr. 10), TIR-NBS-LRR for mungbean yellow mosaic India virus (MYMIV) resistance (VRADI09G06940; chr. 9), E3 ubiquitin-protein ligase RIE1 for SPAD value (VRADI07G28100; chr. 11), WRKY family transcription factor for leaf area (VRADI03G06560; chr. 3), and LOB domain-containing protein 21 for trichomes (VRADI06G04290; chr. 6). In-silico validation of candidate genes was done through digital gene expression analysis using Arabidopsis orthologous (compared with Vigna radiata genome). The findings provided valuable insight for marker-assisted breeding aiming for the development of YMD-resistant and early-maturing mungbean varieties.
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Affiliation(s)
- Manju Kohli
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
- Genetics, Indian Agricultural Research Institute, Delhi, Delhi, India
| | - Hina Bansal
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | | | | | | | - Anirban Roy
- Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Subodh Kumar Sinha
- Biotechnology, National Institute of Plant Biotechnology, New Delhi, Delhi, India
| | - K.M. Shivaprasad
- Genetics, Indian Agricultural Research Institute, Delhi, Delhi, India
| | - Nikki Kumari
- Genetics, Indian Agricultural Research Institute, Delhi, Delhi, India
| | - Atul Kumar
- Division of Seed Science and Technology, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | - Ranjeet R. Kumar
- Biochemistry, Indian Agricultural Research Institute, New Delhi, Delhi, India
| | | | - Muraleedhar Aski
- Genetics, Indian Agricultural Research Institute, Delhi, Delhi, India
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Kumar RR, Dubey K, Goswami S, Rai GK, Rai PK, Salgotra RK, Bakshi S, Mishra D, Mishra GP, Chinnusamy V. Transcriptional Regulation of Small Heat Shock Protein 17 (sHSP-17) by Triticum aestivum HSFA2h Transcription Factor Confers Tolerance in Arabidopsis under Heat Stress. Plants (Basel) 2023; 12:3598. [PMID: 37896061 PMCID: PMC10609734 DOI: 10.3390/plants12203598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 08/29/2023] [Accepted: 08/29/2023] [Indexed: 10/29/2023]
Abstract
Heat shock transcription factors (HSFs) contribute significantly to thermotolerance acclimation. Here, we identified and cloned a putative HSF gene (HSFA2h) of 1218 nucleotide (acc. no. KP257297.1) from wheat cv. HD2985 using a de novo transcriptomic approach and predicted sHSP as its potential target. The expression of HSFA2h and its target gene (HSP17) was observed at the maximum level in leaf tissue under heat stress (HS), as compared to the control. The HSFA2h-pRI101 binary construct was mobilized in Arabidopsis, and further screening of T3 transgenic lines showed improved tolerance at an HS of 38 °C compared with wild type (WT). The expression of HSFA2h was observed to be 2.9- to 3.7-fold higher in different Arabidopsis transgenic lines under HS. HSFA2h and its target gene transcripts (HSP18.2 in the case of Arabidopsis) were observed to be abundant in transgenic Arabidopsis plants under HS. We observed a positive correlation between the expression of HSFA2h and HSP18.2 under HS. Evaluation of transgenic lines using different physio-biochemical traits linked with thermotolerance showed better performance of HS-treated transgenic Arabidopsis plants compared with WT. There is a need to further characterize the gene regulatory network (GRN) of HSFA2h and sHSP in order to modulate the HS tolerance of wheat and other agriculturally important crops.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Gyanendra K Rai
- School of Biotechnology, Sher-e-Kashmir University of Agricultural University of Jammu (J&K), Jammu 180009, India
| | - Pradeep K Rai
- School of Biotechnology, Sher-e-Kashmir University of Agricultural University of Jammu (J&K), Jammu 180009, India
| | - Romesh K Salgotra
- School of Biotechnology, Sher-e-Kashmir University of Agricultural University of Jammu (J&K), Jammu 180009, India
| | - Suman Bakshi
- Nuclear Agriculture & Biotechnology Division, Bhabha Atomic Research Center, Trombay, Mumbai 400085, India
| | - Dwijesh Mishra
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research Institute, New Delhi 110012, India
| | - Gyan P Mishra
- Division of Seed Technology, Indian Agricultural Research Institute, New Delhi 110012, India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi 110012, India
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Kumar RR, Jin B, Teng N. Editorial: Heat stress: response, mitigation, and tolerance in plants. Front Plant Sci 2023; 14:1266765. [PMID: 37645457 PMCID: PMC10461617 DOI: 10.3389/fpls.2023.1266765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 08/07/2023] [Indexed: 08/31/2023]
Affiliation(s)
- Ranjeet R. Kumar
- Division of Biochemistry, Indian Council of Agricultural Research (ICAR)-Indian Agricultural Research Institute, New Delhi, India
| | - Biao Jin
- College of Horticulture and Landscape, Yangzhou University, Yangzhou, China
| | - Nianjun Teng
- College of Horticulture, Nanjing Agricultural University, Nanjing, China
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Kumari S, Kumar RR, Mendiratta SK, Kumar D, Kumar A, Jawla J, Anurag, Rana P, Kumar D. Development of loop-mediated isothermal method and comparison with conventional PCR assay for rapid on spot identification of tissue of cattle origin. J Food Sci Technol 2021; 58:4608-4615. [PMID: 34629525 DOI: 10.1007/s13197-020-04948-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 10/24/2020] [Accepted: 12/21/2020] [Indexed: 11/30/2022]
Abstract
Loop-mediated isothermal amplification (LAMP) is a diagnostic method for meat speciation with rapid and minimal equipment requirements. In this study, we developed cattle-specific tube-based LAMP assays targeting mitochondrial Cyt b gene sequence, compared with conventional PCR assay for specificity, sensitivity, and validation of the assay was made. The LAMP reaction was carried at 64 °C for 45 min, and results were confirmed by SYBR Green I dye and agarose gel-electrophoresis. The specificity of the assays was cross-tested with DNA of buffalo, goat, sheep, and pork. The amplification was observed with samples from cattle only without cross-reactivity with other meat species. The analytical sensitivity of LAMP and PCR method for cattle DNA detection was 0.0001 ng and 1 ng, respectively. Repeatability of the assay was achieved on samples from known/blind and admixture meat with other than cattle at the relative percentage of 20%, 10%, 5%, and 1%. The study concluded that the developed assay can be easily employed for the rapid identification of tissue of cattle origin in meat and meat products in low resource areas.
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Affiliation(s)
- Sarita Kumari
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India.,Division of Livestock Products Technology, Rajasthan University of Veterinary and Animal Sciences, Bikaner, 334001 India
| | - R R Kumar
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
| | - S K Mendiratta
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
| | - Dhananjay Kumar
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
| | - Arun Kumar
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India.,Division of Livestock Products Technology, Rajasthan University of Veterinary and Animal Sciences, Bikaner, 334001 India
| | - Jyoti Jawla
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
| | - Anurag
- Division of Livestock Production Management, Rajasthan University of Veterinary and Animal Sciences, Bikaner, 334001 India
| | - Preeti Rana
- Division of Livestock Products Technology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
| | - Deepak Kumar
- Division of Veterinary Biotechnology, Indian Veterinary Research Institute, Izatngar, Bareilly, 243122 India
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Kumar RR, Bhargava DV, Pandit K, Goswami S, Mukesh Shankar S, Singh SP, Rai GK, Tara Satyavathi C, Praveen S. Lipase - The fascinating dynamics of enzyme in seed storage and germination - A real challenge to pearl millet. Food Chem 2021; 361:130031. [PMID: 34058661 DOI: 10.1016/j.foodchem.2021.130031] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 05/04/2021] [Accepted: 05/05/2021] [Indexed: 11/18/2022]
Abstract
Pearl millet is considered as 'nutri-cereal' because of high nutrient density of the seeds. The grain has limited use because of low keeping quality of the flour due to the activities of rancidity causing enzymes like lipase, lox, pox and PPO. Among all the enzymes, lipase is most notorious because of its robust nature and high activity under different conditions. we have identified 2180 putative transcripts showing homology with different variants of lipase precursor through transcriptome data mining (NCBI BioProject acc. no. PRJNA625418). Lipase plays dual role of facilitating the germination of seeds and deteriorating the quality of the pearl millet flour through hydrolytic rancidity. Different physiochemical methods like heat treatment, micro oven, hydrothermal, etc. have been developed to inhibit lipase activity in pearl millet flour. There is further need to develop improved processing technologies to inhibit the hydrolytic and oxidative rancidity in the floor with enhanced shelf-life.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi Pin 110012, India.
| | - D V Bhargava
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi Pin 110012, India
| | - Kangkan Pandit
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi Pin 110012, India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi Pin 110012, India
| | - S Mukesh Shankar
- Division of Genetics, Indian Agricultural Research Institute, New Delhi Pin 110012, India
| | - Sumer P Singh
- Division of Genetics, Indian Agricultural Research Institute, New Delhi Pin 110012, India
| | - Gyanendra K Rai
- Sher-e-Kashmir University of Agricultural Sciences and Technology, Jammu, Pin 180009, India
| | - C Tara Satyavathi
- All India Coordinated Research Project on Pearl Millet, Jodhpur, Rajasthan Pin 342304, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi Pin 110012, India.
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Dahuja A, Kumar RR, Sakhare A, Watts A, Singh B, Goswami S, Sachdev A, Praveen S. Role of ATP-binding cassette transporters in maintaining plant homeostasis under abiotic and biotic stresses. Physiol Plant 2021; 171:785-801. [PMID: 33280130 DOI: 10.1111/ppl.13302] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 11/24/2020] [Accepted: 12/03/2020] [Indexed: 05/20/2023]
Abstract
The ATP-binding cassette (ABC) transporters belong to a large protein family predominantly present in diverse species. ABC transporters are driven by ATP hydrolysis and can act as exporters as well as importers. These proteins are localized in the membranes of chloroplasts, mitochondria, peroxisomes and vacuoles. ABC proteins are involved in regulating diverse biological processes in plants, such as growth, development, uptake of nutrients, tolerance to biotic and abiotic stresses, tolerance to metal toxicity, stomatal closure, shape and size of grains, protection of pollens, transport of phytohormones, etc. In mitochondria and chloroplast, the iron metabolism and its transport across the membrane are mediated by ABC transporters. Tonoplast-localized ABC transporters are involved in internal detoxification of metal ion; thus protecting against the DNA impairment and maintaining cell growth. ABC transporters are involved in the transport of secondary metabolites inside the cells. Microorganisms also engage a large number of ABC transporters to import and expel substrates decisive for their pathogenesis. ABC transporters also suppress the seed embryonic growth until favorable conditions come. This review aims at giving insights on ABC transporters, their evolution, structure, functions and roles in different biological processes for helping the terrestrial plants to survive under adverse environmental conditions. These specialized plant membrane transporters ensure a sustainable economic yield and high-quality products, especially under unfavorable conditions of growth. These transporters can be suitably manipulated to develop 'Plants for the Future'.
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Affiliation(s)
- Anil Dahuja
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Akshay Sakhare
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, India
| | - Archana Watts
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, India
| | - Bhupinder Singh
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, New Delhi, India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Archana Sachdev
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, India
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Kumar RR, Dubey K, Arora K, Dalal M, Rai GK, Mishra D, Chaturvedi KK, Rai A, Kumar SN, Singh B, Chinnusamy V, Praveen S. Characterizing the putative mitogen-activated protein kinase ( MAPK) and their protective role in oxidative stress tolerance and carbon assimilation in wheat under terminal heat stress. Biotechnol Rep (Amst) 2021; 29:e00597. [PMID: 33659194 PMCID: PMC7890154 DOI: 10.1016/j.btre.2021.e00597] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/28/2021] [Accepted: 02/03/2021] [Indexed: 12/18/2022]
Abstract
Wheat, being sensitive to terminal heat, causes drastic reduction in grain quality and yield. MAPK cascade regulates the network of defense mechanism operated inside plant system. Here, we have identified 21 novel MAPKs through gel-based proteomics and RNA-seq data analysis. Based on digital gene expression, two transcripts (transcript_2834 and transcript_8242) showing homology with MAPK were cloned and characterized from wheat (acc. nos. MK854806 and KT835664). Transcript_2834 was cloned in pET28a vector and recombinant MAPK protein of ∼40.3 kDa was isolated and characterized to have very high in-vitro kinase activity under HS. Native MAPK showed positive correlation with the expression of TFs, HSPs, genes linked with antioxidant enzyme (SOD, CAT, GPX), photosynthesis and starch biosynthesis pathways in wheat under HS. Wheat cv. HD3086 (thermotolerant) having higher expression and activity of MAPK under HS showed significant increase in accumulation of proline, H2O2, starch, and granule integrity, compared with BT-Schomburgk (thermosusceptible).
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Kirti Arora
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Monika Dalal
- ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, 110012, India
| | - Gyanendra K Rai
- Sher-e-Kashmir University of Agricultural Sciences and Technology, Jammu, 180009, India
| | - Dwijesh Mishra
- CABin, Indian Agricultural Statistics Research Institute, New Delhi, 110012, India
| | - Krishna K Chaturvedi
- CABin, Indian Agricultural Statistics Research Institute, New Delhi, 110012, India
| | - Anil Rai
- CABin, Indian Agricultural Statistics Research Institute, New Delhi, 110012, India
| | - Soora Naresh Kumar
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Bhupinder Singh
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
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Kumar RR, Dubey K, Goswami S, Hasija S, Pandey R, Singh PK, Singh B, Sareen S, Rai GK, Singh GP, Singh AK, Chinnusamy V, Praveen S. Heterologous expression and characterization of novel manganese superoxide dismutase (Mn-SOD) – A potential biochemical marker for heat stress-tolerance in wheat (Triticum aestivum). Int J Biol Macromol 2020; 161:1029-1039. [DOI: 10.1016/j.ijbiomac.2020.06.026] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 06/02/2020] [Accepted: 06/03/2020] [Indexed: 12/15/2022]
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Kumar RR, Arora K, Goswami S, Sakhare A, Singh B, Chinnusamy V, Praveen S. MAPK Enzymes: a ROS Activated Signaling Sensors Involved in Modulating Heat Stress Response, Tolerance and Grain Stability of Wheat under Heat Stress. 3 Biotech 2020; 10:380. [PMID: 32802722 DOI: 10.1007/s13205-020-02377-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 07/31/2020] [Indexed: 01/21/2023] Open
Abstract
Mitogen-activated protein kinase (MAPK) signaling cascade is highly conserved across the species triggering the self-adjustment of the cells by transmitting the external signals to the nucleus. The cascade consists of MAPK kinase kinases (MAPKKKs), MAPK kinases (MAPKKs) and MAPKs. These kinases are functionally interrelated through activation by sequential phosphorylation. MAPK cascade is involved in modulating the tolerance and regulating the growth and developmental processes in plants through transcriptional programming. The cascade has been well characterized in Arabidopsis, Tobacco and rice, but limited information is available in wheat due to complexity of genome. MAPK-based sensors have been reported to be highly specific for the external or intracellular stimuli activating specific TF, stress-associated genes (SAGs) and stress-associated proteins (SAPs) linked with heat-stress tolerance and other biological functions especially size, number and quality of grains. Even, MAPKs have been reported to influence the activity of ATP-binding cassette (ABC) transporter superfamily involved in stabilizing the quality of the grains under adverse conditions. Wheat has also diverse network of MAPKs involved in transcriptional reprogramming upon sensing the terminal HS and in turn protect the plants. Current review mainly focuses on the role of MAPKs as signaling sensor and modulator of defense mechanism for mitigating the effect of heat on plants with focus on wheat. It also indirectly protects the nutrient depletion from the grains under heat stress. MAPKs, lying at pivotal positions, can be utilized for manipulating the heat-stress response (HSR) of wheat to develop plant for future (P4F).
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Kirti Arora
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Akshay Sakhare
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Bhupinder Singh
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012 India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012 India
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Goswami S, Asrani P, Ansheef Ali TP, Kumar RD, Vinutha T, Veda K, Kumari S, Sachdev A, Singh SP, Satyavathi CT, Kumar RR, Praveen S. Rancidity Matrix: Development of Biochemical Indicators for Analysing the Keeping Quality of Pearl Millet Flour. FOOD ANAL METHOD 2020. [DOI: 10.1007/s12161-020-01831-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Mishra GP, Dikshit HK, S. V. R, Tripathi K, Kumar RR, Aski M, Singh A, Roy A, Priti, Kumari N, Dasgupta U, Kumar A, Praveen S, Nair RM. Corrigendum: Yellow Mosaic Disease (YMD) of Mungbean ( Vigna radiata (L.) Wilczek): Current Status and Management Opportunities. Front Plant Sci 2020; 11:1064. [PMID: 32754190 PMCID: PMC7367146 DOI: 10.3389/fpls.2020.01064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 06/28/2020] [Indexed: 03/30/2024]
Abstract
[This corrects the article DOI: 10.3389/fpls.2020.00918.].
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Affiliation(s)
- Gyan P. Mishra
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Harsh K. Dikshit
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ramesh S. V.
- Division of Physiology, Biochemistry and PHT, ICAR-Central Plantation Crops Research Institute, Kasaragod, India
| | - Kuldeep Tripathi
- Germplasm Evaluation Division, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India
| | - Ranjeet R. Kumar
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Muraleedhar Aski
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Akanksha Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Anirban Roy
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Priti
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Nikki Kumari
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Uttarayan Dasgupta
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Atul Kumar
- Division of Seed Science and Technology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Shelly Praveen
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ramakrishnan M. Nair
- World Vegetable Center, South Asia, ICRISAT Campus, Patancheru, Hyderabad, India
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Mishra GP, Dikshit HK, S. V. R, Tripathi K, Kumar RR, Aski M, Singh A, Roy A, Priti, Kumari N, Dasgupta U, Kumar A, Praveen S, Nair RM. Yellow Mosaic Disease (YMD) of Mungbean ( Vigna radiata (L.) Wilczek): Current Status and Management Opportunities. Front Plant Sci 2020; 11:918. [PMID: 32670329 PMCID: PMC7327115 DOI: 10.3389/fpls.2020.00918] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 06/04/2020] [Indexed: 03/30/2024]
Abstract
Globally, yellow mosaic disease (YMD) remains a major constraint of mungbean production, and management of this deadly disease is still the biggest challenge. Thus, finding ways to manage YMD including development of varieties possessing resistance against mungbean yellow mosaic virus (MYMV) and mungbean yellow mosaic India virus (MYMIV) is a research priority for mungbean crop. Characterization of YMD resistance using various advanced molecular and biochemical approaches during plant-virus interactions has unfolded a comprehensive network of pathogen survival, disease severity, and the response of plants to pathogen attack, including mechanisms of YMD resistance in mungbean. The biggest challenge in YMD management is the effective utilization of an array of information gained so far, in an integrated manner for the development of genotypes having durable resistance against yellow mosaic virus (YMV) infection. In this backdrop, this review summarizes the role of various begomoviruses, its genomic components, and vector whiteflies, including cryptic species in the YMD expression. Also, information about the genetics of YMD in both mungbean and blackgram crops is comprehensively presented, as both the species are crossable, and same viral strains are also found affecting these crops. Also, implications of various management strategies including the use of resistance sources, the primary source of inoculums and vector management, wide-hybridization, mutation breeding, marker-assisted selection (MAS), and pathogen-derived resistance (PDR) are thoroughly discussed. Finally, the prospects of employing various powerful emerging tools like translational genomics, and gene editing using CRISPR/Cas9 are also highlighted to complete the YMD management perspective in mungbean.
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Affiliation(s)
- Gyan P. Mishra
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Harsh K. Dikshit
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ramesh S. V.
- Division of Physiology, Biochemistry and PHT, ICAR-Central Plantation, Kasaragod, India
| | - Kuldeep Tripathi
- Germplasm Evaluation Division, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India
| | - Ranjeet R. Kumar
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Muraleedhar Aski
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Akanksha Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Anirban Roy
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Priti
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Nikki Kumari
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Uttarayan Dasgupta
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Atul Kumar
- Division of Seed Science and Technology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Shelly Praveen
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ramakrishnan M. Nair
- World Vegetable Center, South Asia, ICRISAT Campus, Patancheru, Hyderabad, India
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Affiliation(s)
- R R Kumar
- Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - S Jha
- Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - A Dhooria
- Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - V Dhir
- Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
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Kumar RR, Hasija S, Goswami S, Tasleem M, Sakhare A, Kumar S, Bakshi S, Jambhulkar S, Rai GK, Singh B, Singh GP, Pathak H, Viswanathan C, Praveen S. Gamma irradiation protect the developing wheat endosperm from oxidative damage by balancing the trade-off between the defence network and grains quality. Ecotoxicol Environ Saf 2019; 174:637-648. [PMID: 30875557 DOI: 10.1016/j.ecoenv.2019.03.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Revised: 03/03/2019] [Accepted: 03/04/2019] [Indexed: 06/09/2023]
Abstract
Gamma irradiation has been reported to modulate the biochemical and molecular parameters associated with the tolerance of plant species under biotic/ abiotic stress. Wheat is highly sensitive to heat stress (HS), as evident from the decrease in the quantity and quality of the total grains. Here, we studied the effect of pre-treatment of wheat dry seeds with different doses of gamma irradiation (0.20, 0.25 and 0.30 kGy) on tolerance level and quality of developing wheat endospermic tissue under HS (38 °C, 1 h; continuously for three days). Expression analysis of genes associated with defence and starch metabolism in developing grains showed maximum transcripts of HSP17 (in response to 0.25 kGy + HS) and AGPase (under 0.30 kGy), as compared to control. Gamma irradiation was observed to balance the accumulation of H2O2 by enhancing the activities of SOD and GPx in both the cvs. under HS. Gamma irradiation was observed to stabilize the synthesis of starch and amylose by regulating the activities of AGPase, SSS and α-amylase under HS. The appearance of isoforms of gliadins (α, β, γ, ω) were observed more in gamma irradiated seeds (0.20 kGy), as compared to control. Gamma irradiation (0.25 kGy in HD3118 & 0.20 kGy in HD3086) was observed to have positive effect on the width, length and test seed weight of the grains under HS. The information generated in present investigation provides easy, cheap and user-friendly technology to mitigate the effect of terminal HS on the grain-development process of wheat along with development of robust seeds with high nutrient density.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Sumedha Hasija
- Division of Biochemistry, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Mohd Tasleem
- Division of Biochemistry, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Akshay Sakhare
- Division of Plant Physiology, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Sudhir Kumar
- Division of Plant Physiology, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Suman Bakshi
- Department of Atomic Energy, Bhabha Atomic Research Center, Mumbai, India.
| | - Sanjay Jambhulkar
- Department of Atomic Energy, Bhabha Atomic Research Center, Mumbai, India.
| | - Gyanendra K Rai
- Sher-e-Kashmir University of Agricultural Sciences and Technology, Chatta, Jammu 180009, India.
| | - Bhupinder Singh
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Gyanendra P Singh
- Indian Institute of Wheat and Barley Research (IIWBR), Karnal, Haryana, India.
| | | | - Chinnusamy Viswanathan
- Division of Plant Physiology, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, Pusa Campus, New Delhi 110012, India.
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Dwivedi P, Kumar RR, Dhooria A, Adarsh MB, Malhotra S, Kakkar N, Naidu S, Sharma SK, Sharma A, Jain S, Dhir V. Corticosteroid-associated lupus pancreatitis: a case series and systematic review of the literature. Lupus 2019; 28:731-739. [PMID: 31023131 DOI: 10.1177/0961203319844004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
BACKGROUND Acute pancreatitis is an uncommon complication that occurs in 0.85% to 4% of patients with systemic lupus erythematosus (SLE). In some patients, it occurs within days to weeks of starting medium-to-high dose corticosteroids. The authors have used the term 'corticosteroid-associated lupus pancreatitis' for these patients, and they report a case series and perform a systematic review of previously published reports. METHODS For the purpose of this study, corticosteroid-associated lupus pancreatitis was defined as occurrence of acute pancreatitis in patients with SLE (fulfilling the 1997 ACR), within 3 weeks of starting therapy with medium-to-high dose corticosteroids - either newly initiated or escalated from a lower dose. All patients with SLE admitted in the last 2.5 years in a North Indian university hospital were reviewed, and those with pancreatitis who fulfilled the above criteria were included in the case series. For the systematic review, a PUBMED search using the keywords 'lupus' and 'pancreatitis' was performed, and reports in English were reviewed for an association with corticosteroids. RESULTS Among 420 admissions of SLE patients, six patients (1.4%) fulfilled criteria for corticosteroid-associated lupus pancreatitis. All were female, with mean age and disease duration of 19.7 ± 3.3 and 3.8 ± 2.5 years respectively. All had active disease and developed acute pancreatitis within 48-72 hours of newly initiating medium-to-high dose corticosteroids (in three patients) or escalating them to medium-high dose (in three patients). After the development of pancreatitis, corticosteroids were continued in all except one patient. In addition, two patients received pulse methylprednisolone, two received pulse cyclophosphamide and one was started on azathioprine. Three patients died during hospitalization, all with severe pancreatitis. On systematic review, among 451 cases of lupus pancreatitis reported, 23 (5%) fulfilled criteria for 'corticosteroid-associated lupus pancreatitis'. A majority of them had pancreatitis within 3 days of starting treatment with medium-to-high dose corticosteroids. The mortality in these patients was 37.5%. CONCLUSION In a small but substantial proportion of patients with lupus who develop pancreatitis, it occurs within days to weeks of starting medium-to-high dose corticosteroids. Many of these patients continue to receive corticosteroids, and some receive more aggressive immunosuppression. However, they have significant mortality, and further studies are required to identify appropriate treatment in this subgroup of patients.
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Affiliation(s)
- P Dwivedi
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - R R Kumar
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - A Dhooria
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - M B Adarsh
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - S Malhotra
- 2 Department of Pathology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - N Kakkar
- 2 Department of Pathology, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - S Naidu
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - S K Sharma
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - A Sharma
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - S Jain
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - V Dhir
- 1 Department of Internal Medicine, Postgraduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
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Affiliation(s)
- R R Kumar
- Clinical Immunology and Rheumatology Wing, Department of Internal Medicine, Postgraduate Institute of Medical Education and Research, Sector-12, Chandigarh, India
| | - S Jha
- Clinical Immunology and Rheumatology Wing, Department of Internal Medicine, Postgraduate Institute of Medical Education and Research, Sector-12, Chandigarh, India
| | - A Sharma
- Clinical Immunology and Rheumatology Wing, Department of Internal Medicine, Postgraduate Institute of Medical Education and Research, Sector-12, Chandigarh, India
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Kumar RR, Singh K, Ahuja S, Tasleem M, Singh I, Kumar S, Grover M, Mishra D, Rai GK, Goswami S, Singh GP, Chinnusamy V, Rai A, Praveen S. Quantitative proteomic analysis reveals novel stress-associated active proteins (SAAPs) and pathways involved in modulating tolerance of wheat under terminal heat. Funct Integr Genomics 2018; 19:329-348. [PMID: 30465139 DOI: 10.1007/s10142-018-0648-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 11/14/2018] [Accepted: 11/14/2018] [Indexed: 02/06/2023]
Abstract
Terminal heat stress has detrimental effect on the growth and yield of wheat. Very limited information is available on heat stress-associated active proteins (SAAPs) in wheat. Here, we have identified 159 protein groups with 4271 SAAPs in control (22 ± 3 °C) and HS-treated (38 °C, 2 h) wheat cvs. HD2985 and HD2329 using iTRAQ. We identified 3600 proteins to be upregulated and 5825 proteins to be downregulated in both the wheat cvs. under HS. We observed 60.3% of the common SAAPs showing upregulation in HD2985 (thermotolerant) and downregulation in HD2329 (thermosusceptible) under HS. GO analysis showed proton transport (molecular), photosynthesis (biological), and ATP binding (cellular) to be most altered under HS. Most of the SAAPs identified were observed to be chloroplast localized and involved in photosynthesis. Carboxylase enzyme was observed most abundant active enzymes in wheat under HS. An increase in the degradative isoenzymes (α/β-amylases) was observed, as compared to biosynthesis enzymes (ADP-glucophosphorylase, soluble starch synthase, etc.) under HS. Transcript profiling showed very high relative fold expression of HSP17, CDPK, Cu/Zn SOD, whereas downregulation of AGPase, SSS under HS. The identified SAAPs can be used for targeted protein-based precision wheat-breeding program for the development of 'climate-smart' wheat.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Khushboo Singh
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Sumedha Ahuja
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Mohd Tasleem
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Indra Singh
- CABin, Indian Agricultural Statistical Research Institute (IASRI), Pusa, New Delhi, 110012, India
| | - Sanjeev Kumar
- CABin, Indian Agricultural Statistical Research Institute (IASRI), Pusa, New Delhi, 110012, India
| | - Monendra Grover
- CABin, Indian Agricultural Statistical Research Institute (IASRI), Pusa, New Delhi, 110012, India
| | - Dwijesh Mishra
- CABin, Indian Agricultural Statistical Research Institute (IASRI), Pusa, New Delhi, 110012, India
| | - Gyanendra K Rai
- Sher-E-Kashmir University of Agriculture Science and Technology, Chatta, Jammu and Kashmir, 180009, India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Gyanendra P Singh
- Indian Institute of Wheat and Barley Research, Karnal, Haryana, 132001, India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Anil Rai
- CABin, Indian Agricultural Statistical Research Institute (IASRI), Pusa, New Delhi, 110012, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India.
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Kumar RR, Goswami S, Singh K, Dubey K, Rai GK, Singh B, Singh S, Grover M, Mishra D, Kumar S, Bakshi S, Rai A, Pathak H, Chinnusamy V, Praveen S. Characterization of novel heat-responsive transcription factor (TaHSFA6e) gene involved in regulation of heat shock proteins (HSPs) - A key member of heat stress-tolerance network of wheat. J Biotechnol 2018; 279:1-12. [PMID: 29746879 DOI: 10.1016/j.jbiotec.2018.05.008] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Revised: 05/06/2018] [Accepted: 05/07/2018] [Indexed: 11/16/2022]
Abstract
Heat stress has an adverse effect on the quality and quantity of agriculturally important crops, especially wheat. The tolerance mechanism has not been explored much in wheat and very few genes/ TFs responsive to heat stress is available on public domain. Here, we identified, cloned and characterized a putative TaHSFA6e TF gene of 1.3 kb from wheat cv. HD2985. We observed an ORF of 368 aa with Hsf DNA binding signature domain in the amino acid sequence. Single copy number of TaHSFA6e was observed integrated in the genome of wheat. Expression analysis of TaHSFA6e under differential HS showed maximum transcripts in wheat cv. Halna (thermotolerant) in response to 38 °C for 2 h during pollination and grain-filling stages, as compared to PBW343, HD2329 and HD2985. Putative target genes of TaHSFA6e (HSP17, HSP70 and HSP90) showed upregulation in response to differential HS (30 & 38 °C, 2 h) during pollination and grain-filling stages. Small HSP17 was observed most triggered in Halna under HS. We observed increase in the catalase, guaiacol peroxidase, total antioxidant capacity (TAC), and decrease in the lipid peroxidation in thermotolerant cvs. (Halna, HD2985), as compared to thermosusceptible (PBW343, HD2329) under differential HS. Multiple stresses (heat - 38 °C, 2 h, and drought - 100 mL of 20% polyethylene Glycol 6000) during seedling stage of wheat showed positive correlation between the expression of TaHSFA6e, putative targets (HSP70, HSP90, HSP17) and TAC. Halna (thermotolerant) performed better, as compared to other contrasting cvs. TaHSFA6e TF can be used as promising candidate gene for manipulating the heat stress-tolerance network.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Khushboo Singh
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Gyanendra K Rai
- Sher-E-Kashmir University of Science and Technology, Chatta, Jammu and Kashmir, 180009, India
| | - Bhupinder Singh
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Shivdhar Singh
- Centre for Environment Science and Climate Resilient Agriculture (CESCRA), Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Monendra Grover
- CABin, Indian Agricultural Statistical Research Institute, ICAR, New Delhi, 110012, India
| | - Dwijesh Mishra
- CABin, Indian Agricultural Statistical Research Institute, ICAR, New Delhi, 110012, India
| | - Sanjeev Kumar
- CABin, Indian Agricultural Statistical Research Institute, ICAR, New Delhi, 110012, India
| | - Suman Bakshi
- Department of Atomic Energy, Babha Atomic Research Center, Mumbai, 400085, India
| | - Anil Rai
- CABin, Indian Agricultural Statistical Research Institute, ICAR, New Delhi, 110012, India
| | - Himanshu Pathak
- Central Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India.
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Kumar RR, Goswami S, Shamim M, Mishra U, Jain M, Singh K, Singh JP, Dubey K, Singh S, Rai GK, Singh GP, Pathak H, Chinnusamy V, Praveen S. Biochemical Defense Response: Characterizing the Plasticity of Source and Sink in Spring Wheat under Terminal Heat Stress. Front Plant Sci 2017; 8:1603. [PMID: 28979274 PMCID: PMC5611565 DOI: 10.3389/fpls.2017.01603] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Accepted: 08/31/2017] [Indexed: 05/11/2023]
Abstract
Wheat is highly prone to terminal heat stress (HS) under late-sown conditions. Delayed- sowing is one of the preferred methods to screen the genotypes for thermotolerance under open field conditions. We investigated the effect of terminal HS on the thermotolerance of four popular genotypes of wheat i.e. WR544, HD2967, HD2932, and HD2285 under field condition. We observed significant variations in the biochemical parameters like protein content, antioxidant activity, proline and total reducing sugar content in leaf, stem, and spike under normal (26 ± 2°C) and terminal HS (36 ± 2°C) conditions. Maximum protein, sugars and proline was observed in HD2967, as compared to other cultivars under terminal HS. Wheat cv. HD2967 showed more adaptability to the terminal HS. Differential protein-profiling in leaves, stem and spike of HD2967 under normal (26 ± 2°C) and terminal HS (36 ± 2°C) showed expression of some unique protein spots. MALDI-TOF/MS analysis showed the DEPs as RuBisCO (Rub), RuBisCO activase (Rca), oxygen evolving enhancer protein (OEEP), hypothetical proteins, etc. Expression analysis of genes associated with photosynthesis (Rub and Rca) and starch biosynthesis pathway (AGPase, SSS and SBE) showed significant variations in the expression under terminal HS. HD2967 showed better performance, as compared to other cultivars under terminal HS. SSS activity observed in HD2967 showed more stability under terminal HS, as compared with other cultivars. Triggering of different biochemical parameters in response to terminal HS was observed to modulate the plasticity of carbon assimilatory pathway. The identified DEPs will enrich the proteomic resources of wheat and will provide a potential biochemical marker for screening wheat germplasm for thermotolerance. The model hypothesized will help the researchers to work in a more focused way to develop terminal heat tolerant wheat without compromising with the quality and quantity of grains.
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Affiliation(s)
- Ranjeet R. Kumar
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
- *Correspondence: Ranjeet R. Kumar
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Mohammed Shamim
- Department of Molecular Biology and Genetic Engineering, Bihar Agricultural UniversityBhagalpur, India
| | - Upama Mishra
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Monika Jain
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Khushboo Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Jyoti P. Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Shweta Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Gyanendra K. Rai
- Sher-e-Kashmir University of Agricultural Sciences and TechnologyJammu, India
| | - Gyanendra P. Singh
- Indian Institute of Wheat and Barley Research, Indian Council of Agricultural ResearchKarnal, India
| | | | | | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
- Shelly Praveen
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Kumar RR, Goswami S, Singh K, Dubey K, Singh S, Sharma R, Verma N, Kala YK, Rai GK, Grover M, Mishra DC, Singh B, Pathak H, Chinnusamy V, Rai A, Praveen S. Identification of Putative RuBisCo Activase (TaRca1)-The Catalytic Chaperone Regulating Carbon Assimilatory Pathway in Wheat (Triticum aestivum) under the Heat Stress. Front Plant Sci 2016; 7:986. [PMID: 27462325 PMCID: PMC4940427 DOI: 10.3389/fpls.2016.00986] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Accepted: 06/21/2016] [Indexed: 05/12/2023]
Abstract
RuBisCo activase (Rca) is a catalytic chaperone involved in modulating the activity of RuBisCo (key enzyme of photosynthetic pathway). Here, we identified eight novel transcripts from wheat through data mining predicted to be Rca and cloned a transcript of 1.4 kb from cv. HD2985, named as TaRca1 (GenBank acc. no. KC776912). Single copy number of TaRca1 was observed in wheat genome. Expression analysis in diverse wheat genotypes (HD2985, Halna, PBW621, and HD2329) showed very high relative expression of TaRca1 in Halna under control and HS-treated, as compared to other cultivars at different stages of growth. TaRca1 protein was predicted to be chloroplast-localized with numerous potential phosphorylation sites. Northern blot analysis showed maximum accumulation of TaRca1 transcript in thermotolerant cv. during mealy-ripe stage, as compared to thermosusceptible. Decrease in the photosynthetic parameters was observed in all the cultivars, except PBW621 in response to HS. We observed significant increase in the Rca activity in all the cultivars under HS at different stages of growth. HS causes decrease in the RuBisCo activity; maximum reduction was observed during pollination stage in thermosusceptible cvs. as validated through immunoblotting. We observed uniform carbon distribution in different tissues of thermotolerant cvs., as compared to thermosusceptible. Similarly, tolerance level of leaf was observed maximum in Halna having high Rca activity under HS. A positive correlation was observed between the transcript and activity of TaRca1 in HS-treated Halna. Similarly, TaRca1 enzyme showed positive correlation with the activity of RuBisCo. There is, however, need to manipulate the thermal stability of TaRca1 enzyme through protein engineering for sustaining the photosynthetic rate under HS-a novel approach toward development of "climate-smart" crop.
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Affiliation(s)
- Ranjeet R. Kumar
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Khushboo Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Shweta Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Renu Sharma
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Neeraj Verma
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Yugal K. Kala
- Division of Genetics, Indian Agricultural Research InstituteNew Delhi, India
| | - Gyanendra K. Rai
- School of Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and TechnologyJammu, India
| | - Monendra Grover
- Centre for Agricultural Bioinformatics, Indian Council of Agricultural Research-Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Dwijesh C. Mishra
- Centre for Agricultural Bioinformatics, Indian Council of Agricultural Research-Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Bhupinder Singh
- Nuclear Research Laboratory, Plant Physiology, Indian Agricultural Research InstituteNew Delhi, India
| | - Himanshu Pathak
- Center for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research InstituteNew Delhi, India
| | - Viswanathan Chinnusamy
- Division of Plant Physiology, Indian Council of Agricultural Research-Indian Agricultural Research InstituteNew Delhi, India
| | - Anil Rai
- Centre for Agricultural Bioinformatics, Indian Council of Agricultural Research-Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
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Goswami S, Kumar RR, Dubey K, Singh JP, Tiwari S, Kumar A, Smita S, Mishra DC, Kumar S, Grover M, Padaria JC, Kala YK, Singh GP, Pathak H, Chinnusamy V, Rai A, Praveen S, Rai RD. SSH Analysis of Endosperm Transcripts and Characterization of Heat Stress Regulated Expressed Sequence Tags in Bread Wheat. Front Plant Sci 2016; 7:1230. [PMID: 27582756 PMCID: PMC4988357 DOI: 10.3389/fpls.2016.01230] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 08/02/2016] [Indexed: 05/11/2023]
Abstract
Heat stress is one of the major problems in agriculturally important cereal crops, especially wheat. Here, we have constructed a subtracted cDNA library from the endosperm of HS-treated (42°C for 2 h) wheat cv. HD2985 by suppression subtractive hybridization (SSH). We identified ~550 recombinant clones ranging from 200 to 500 bp with an average size of 300 bp. Sanger's sequencing was performed with 205 positive clones to generate the differentially expressed sequence tags (ESTs). Most of the ESTs were observed to be localized on the long arm of chromosome 2A and associated with heat stress tolerance and metabolic pathways. Identified ESTs were BLAST search using Ensemble, TriFLD, and TIGR databases and the predicted CDS were translated and aligned with the protein sequences available in pfam and InterProScan 5 databases to predict the differentially expressed proteins (DEPs). We observed eight different types of post-translational modifications (PTMs) in the DEPs corresponds to the cloned ESTs-147 sites with phosphorylation, 21 sites with sumoylation, 237 with palmitoylation, 96 sites with S-nitrosylation, 3066 calpain cleavage sites, and 103 tyrosine nitration sites, predicted to sense the heat stress and regulate the expression of stress genes. Twelve DEPs were observed to have transmembrane helixes (TMH) in their structure, predicted to play the role of sensors of HS. Quantitative Real-Time PCR of randomly selected ESTs showed very high relative expression of HSP17 under HS; up-regulation was observed more in wheat cv. HD2985 (thermotolerant), as compared to HD2329 (thermosusceptible) during grain-filling. The abundance of transcripts was further validated through northern blot analysis. The ESTs and their corresponding DEPs can be used as molecular marker for screening or targeted precision breeding program. PTMs identified in the DEPs can be used to elucidate the thermotolerance mechanism of wheat-a novel step toward the development of "climate-smart" wheat.
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Affiliation(s)
- Suneha Goswami
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
- *Correspondence: Suneha Goswami
| | - Ranjeet R. Kumar
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
- Ranjeet R. Kumar
| | - Kavita Dubey
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Jyoti P. Singh
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Sachidanand Tiwari
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Ashok Kumar
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Shuchi Smita
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Dwijesh C. Mishra
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Sanjeev Kumar
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Monendra Grover
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research InstituteNew Delhi, India
| | | | - Yugal K. Kala
- Division of Genetics, Indian Agricultural Research InstituteNew Delhi, India
| | - Gyanendra P. Singh
- Division of Genetics, Indian Agricultural Research InstituteNew Delhi, India
| | - Himanshu Pathak
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research InstituteNew Delhi, India
| | | | - Anil Rai
- Centre for Agricultural Bio-Informatics, Indian Agricultural Statistics Research InstituteNew Delhi, India
| | - Shelly Praveen
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
| | - Raj D. Rai
- Division of Biochemistry, Indian Agricultural Research InstituteNew Delhi, India
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Kedia A, Dwivedy AK, Pandey AK, Kumar RR, Regmi P, Dubey NK. Efficacy of chemically characterized Foeniculum vulgare Mill seed essential oil in protection of raw tobacco leaves during storage against fungal and aflatoxin contamination. J Appl Microbiol 2015; 119:991-8. [PMID: 26218659 DOI: 10.1111/jam.12915] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Revised: 06/29/2015] [Accepted: 07/08/2015] [Indexed: 01/18/2023]
Abstract
AIMS To report fungal and aflatoxin contamination in stored tobacco leaves and the potential of Foeniculum vulgare (fennel) seed essential oil (EO) as a plant-based preservative in protection of tobacco during storage. METHODS AND RESULTS Mycological analysis of tobacco samples was done by surface sterilization and serial dilution tests. The Aspergillus flavus isolates were screened for their toxigenicity. Both in vivo and in vitro tests were done to evaluate antifungal and antiaflatoxigenic efficacy of chemically characterized EO. The mycoflora analysis revealed 108 fungal colonies belonging to five genera and nine species. All A. flavus isolates were found aflatoxigenic during screening. Gas chromatography and mass spectrometry analysis of EO identified 19 components (99·66%); estragole being the major component (47·49%). The EO showed broad fungitoxicity at 1·25 μl ml(-1) and 100% inhibition to AFB1 production as well as ergosterol synthesis at 1·0 μl ml(-1) concentration. EO showed 100% protection of stored tobacco samples from aflatoxin B1 contamination. CONCLUSIONS The fennel EO can thus be formulated as a plant-based preservative for food items. SIGNIFICANCE AND IMPACT OF THE STUDY The present investigation comprises the first report on antiaflatoxin efficacy of fennel oil and its potency in the protection of tobacco leaves from fungal and aflatoxin contamination during storage.
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Affiliation(s)
- A Kedia
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
| | - A K Dwivedy
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
| | - A K Pandey
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
| | - R R Kumar
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
| | - P Regmi
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
| | - N K Dubey
- Laboratory of Herbal Pesticides, Centre of advanced study in Botany, Banaras Hindu University, Varanasi, India
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Kumar RR, Goswami S, Sharma SK, Kala YK, Rai GK, Mishra DC, Grover M, Singh GP, Pathak H, Rai A, Chinnusamy V, Rai RD. Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.). OMICS 2015; 19:632-47. [PMID: 26406536 DOI: 10.1089/omi.2015.0097] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Wheat is a staple food worldwide and provides 40% of the calories in the diet. Climate change and global warming pose a threat to wheat production, however, and demand a deeper understanding of how heat stress might impact wheat production and wheat biology. However, it is difficult to identify novel heat stress associated genes when the genomic information is not available. Wheat has a very large and complex genome that is about 37 times the size of the rice genome. The present study sequenced the whole transcriptome of the wheat cv. HD2329 at the flowering stage, under control (22°±3°C) and heat stress (42°C, 2 h) conditions using Illumina HiSeq and Roche GS-FLX 454 platforms. We assembled more than 26.3 and 25.6 million high-quality reads from the control and HS-treated tissues transcriptome sequences respectively. About 76,556 (control) and 54,033 (HS-treated) contigs were assembled and annotated de novo using different assemblers and a total of 21,529 unigenes were obtained. Gene expression profile showed significant differential expression of 1525 transcripts under heat stress, of which 27 transcripts showed very high (>10) fold upregulation. Cellular processes such as metabolic processes, protein phosphorylation, oxidations-reductions, among others were highly influenced by heat stress. In summary, these observations significantly enrich the transcript dataset of wheat available on public domain and show a de novo approach to discover the heat-responsive transcripts of wheat, which can accelerate the progress of wheat stress-genomics as well as the course of wheat breeding programs in the era of climate change.
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Affiliation(s)
- Ranjeet R Kumar
- 1 Division of Biochemistry, Indian Agricultural Research Institute , New Delhi, India
| | - Suneha Goswami
- 1 Division of Biochemistry, Indian Agricultural Research Institute , New Delhi, India
| | - Sushil K Sharma
- 1 Division of Biochemistry, Indian Agricultural Research Institute , New Delhi, India
| | - Yugal K Kala
- 2 Division of Genetics, Indian Agricultural Research Institute , New Delhi, India
| | - Gyanendra K Rai
- 3 Sher-e-Kashmir University of Agricultural Sciences and Technology , Jammu, India
| | - Dwijesh C Mishra
- 4 Centre for Agricultural Bio-Informatics (CAB-in), Indian Agricultural Statistics Research Institute (IASRI) , New Delhi, India
| | - Monendra Grover
- 4 Centre for Agricultural Bio-Informatics (CAB-in), Indian Agricultural Statistics Research Institute (IASRI) , New Delhi, India
| | | | - Himanshu Pathak
- 6 Division of CESCRA, Indian Agricultural Research Institute , New Delhi, India
| | - Anil Rai
- 4 Centre for Agricultural Bio-Informatics (CAB-in), Indian Agricultural Statistics Research Institute (IASRI) , New Delhi, India
| | - Viswanathan Chinnusamy
- 7 Division of Plant Physiology, Indian Agricultural Research Institute , New Delhi, India
| | - Raj D Rai
- 1 Division of Biochemistry, Indian Agricultural Research Institute , New Delhi, India
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Raghavan R, Krishnamurthy S, Ganesh RN, Kumar RR, Mahadevan S. Takayasu arteritis: Association with mesangioproliferative glomerulonephritis in a 9-year-old child. Indian J Nephrol 2014; 24:407-8. [PMID: 25484544 PMCID: PMC4244730 DOI: 10.4103/0971-4065.134685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- R Raghavan
- Department of Pediatrics, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India
| | - S Krishnamurthy
- Department of Pediatrics, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India
| | - R N Ganesh
- Department of Pathology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India
| | - R R Kumar
- Department of Pediatrics, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India
| | - S Mahadevan
- Department of Pediatrics, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, India
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Abstract
This study evaluated the protective potential of curcumin on the possible side effects of bortezomib (Bt) therapy on normal cells in mice. The mice were segregated into three groups ( n = 10) that included normal control, Bt-treated, and Bt + curcumin-treated groups. The Bt treatment resulted in significant decrease in the enzyme activity of erythrocyte δ-aminolevulinic acid dehydratase (ALAD). Also a significant decrease in the hemoglobin (Hb) was also noticed. On the other hand, curcumin co-treatment improvised enzyme activity of erythrocyte ALAD as well as Hb values. The study, therefore, concludes that curcumin co-treatment with Bt has a potential to take care of possible side effects of Bt therapy on normal cells.
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Affiliation(s)
- RR Kumar
- Department of Biophysics, Post Graduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
| | - A Malhotra
- Department of Biophysics, Post Graduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
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Kumar RR, Sharma SK, Rai GK, Singh K, Choudhury M, Singh GP, Goswami S, Pathak H, Rai RD. Exogenous application of putrescine at pre-anthesis enhances the thermotolerance of wheat (Triticum aestivum L.). Indian J Biochem Biophys 2014; 51:396-406. [PMID: 25630110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Antioxidant enzymes, besides being involved in various developmental processes, are known to be important for environmental stress tolerance in plants. In this study, the effect of treatment of 2.5 mM putrescine (Put), heat stress (HS -42 degrees C for 2 h) and their combination on the expression and activity of antioxidant enzymes was studied at pre-anthesis in the leaves of two wheat (Triticum aestivum L.) cultivars--HDR77 (thermotolerant) and HD2329 (thermosusceptible). We observed that 2.5 mM Put before HS significantly enhanced the transcript levels of superoxide dismutase (SOD), catalase (CAT), cytoplasmic and peroxisomal ascorbate peroxidase (cAPX, pAPX) in both the cultivars. However, the activities of antioxidant enzymes (SOD, CAT, APX and GR), as well as accumulation of antioxidants (ascorbic acid and total thiol content) were higher in HDR77 than in HD2329 in response to the treatment 2.5 mM Put + HS. No significant change was observed in the proline accumulation in response to HS and combined treatment of 2.5 mM Put + HS. A decrease in the H2O2 accumulation, lipid peroxidation and increase in cell membrane stability (CMS) were observed in response to 2.5 mM Put + HS treatment, as compared to HS treatment alone in both the cultivars; HDR77 was, however, more responsive to 2.5 mM Put + HS treatment. Put (2.5 mM) treatment at pre-anthesis thus modulated the defense mechanism responsible for the thermotolerance capacity of wheat under the heat stress. Elicitors like Put, therefore, need to be further studied for temporarily manipulating the thermotolerance capacity of wheat grown under the field conditions in view of the impending global climate change.
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Kumar RR, Sharma SK, Goswami S, Singh GP, Singh R, Singh K, Pathak H, Rai RD. Characterization of differentially expressed stress-associated proteins in starch granule development under heat stress in wheat (Triticum aestivum L.). Indian J Biochem Biophys 2013; 50:126-138. [PMID: 23720887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Abiotic stress causes abrupt increase in the expression of stress-associated proteins, which provide tolerance by modulating the defense mechanism of plants. Small heat shock proteins (sHSPs) and anti-oxidant enzymes are important for environmental stress tolerance of the plants. In this study, two full-length cDNAs encoding small heat shock protein (sHSP) and superoxide dismutase (SOD), designated as TasHSP and SODI were identified and characterized from C-306 (thermotolerant) and PBW343 (thermosusceptible) cultivars of wheat (Triticum aestivum L.). An alpha crystalline domain was observed in TasHSP and manganese/iron binding domain in case of SODI. Quantitative real-time PCR showed very high transcript level of TasHSP and SOD in C-306 compared to PBW343 at different stages of growth and against differential heat stress (HS). Under differential HS at milky-dough stage, the fold change in transcript of both TasHSP and SOD was observed maximum in C-306, compared to PBW343. Protein profiling and isoenzymes analysis showed the expression of several heat-stable proteins and prominent isoenzymes of SOD in C-306, compared to PBW343. Scanning electron microscopy (SEM) of starch granules showed globular, well-shaped and more numbers of endospermic cells in C-306, compared to defragmented, irregular shaped and shrunken granules in case of PBW343 under HS treatment (42 degrees C for 2 h). Diurnal change in soluble starch synthase (SSS) activity showed an increase in the activity during afternoon (35 degrees C), compared to morning (29 degrees C) and evening (32 degrees C) in both the cultivars. Under heat stress (42 degrees C for 2 h), a drastic decrease in the SSS activity was observed, due to the thermal denaturation of the enzyme. Thermotolerance capacity analyzed using cell membrane stability (CMS) showed significantly higher CMS in case of C-306, compared to PBW343 at different stages of growth. Findings suggest that abundance of TasHSP and SODI during milky-dough stage plays a very important role in starch granule biosynthesis. The mechanism may be further exploited to develop tolerant wheat cultivar with high quality seeds.
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Affiliation(s)
- Ranjeet R Kumar
- Division of Biochemistry, Indian Agricultural Research Institute, New Delhi, 110012, India.
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Gokulakrishnan P, Kumar RR, Sharma BD, Mendiratta SK, Sharma D. Sex Determination of Cattle Meat by Polymerase Chain Reaction Amplification of the DEAD Box Protein (DDX3X/DDX3Y) Gene. Asian-Australas J Anim Sci 2012; 25:733-7. [PMID: 25049620 PMCID: PMC4093110 DOI: 10.5713/ajas.2012.12003] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/2012] [Revised: 03/17/2012] [Accepted: 02/21/2012] [Indexed: 11/27/2022]
Abstract
Determination of sex origin of cattle meat by fast and reliable molecular methods is an important measure to ensure correct allocation of export refunds particularly in European countries and also female cattle (cow) slaughter is legally banned in India because of religious beliefs. Based on the DEAD box protein gene located on the X and Y chromosomes, 2 pair of primers were designed and the system of PCR was optimized. Upon PCR amplification, male tissue showed 2 bands, while female tissue resulted in only one band. The accuracy and specificity of the primers was assessed using DNA template extracted from cattle meat of known sex. The protocol was subjected to a blind test and showed 100% concordance, proving its accuracy and reliability.
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Affiliation(s)
- P Gokulakrishnan
- Genome Mapping Laboratory, Central Avian Research Institute, Izatnagar, Bareilly (U.P.) 243 122, India
| | - R R Kumar
- Genome Mapping Laboratory, Central Avian Research Institute, Izatnagar, Bareilly (U.P.) 243 122, India
| | - B D Sharma
- Genome Mapping Laboratory, Central Avian Research Institute, Izatnagar, Bareilly (U.P.) 243 122, India
| | - S K Mendiratta
- Genome Mapping Laboratory, Central Avian Research Institute, Izatnagar, Bareilly (U.P.) 243 122, India
| | - D Sharma
- Genome Mapping Laboratory, Central Avian Research Institute, Izatnagar, Bareilly (U.P.) 243 122, India
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Kumar RR, Hay KD. Demographic analysis of oral lichen planus presentations to Auckland Oral Medicine Clinic from 1999 to 2006. N Z Dent J 2010; 106:113-114. [PMID: 20882741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
AIM The objective of this study was to describe the demographic characteristics of a case series of patients with a clinical and histopathological diagnosis of oral lichen planus who presented to the Oral Health Unit (Auckland District Health Board) between the years 1999 and 2006 (an 8-year period). METHOD The records of patients who had a clinical and histopathological diagnosis of oral lichen planus were audited. Demographic (age, gender, ethnicity), clinical and histopathological data were collated. Patients whose ethnicity was not recorded were noted but not included in this part of the analysis. RESULTS Between 1999 and 2006, 267 patients (82 males, 185 females; age range 21 to 93 years) had a clinical and histopathological diagnosis of oral lichen planus. Ethnicity data were available for 207 of those, of whom 108 (52.2%) were European; 65 (31.4%) of Indian subcontinent origin (India, Pakistan, Sri Lanka); 20 (9.7%) were Asian; 14 (6.8%) were Pacific Islanders; 50 (24.2%) were 'Other'; and 10 (4.8%) were 'Unknown'. None was Maori. CONCLUSION The age and gender distribution in this case series were similar to that observed in a comparable UK study. The major findings were in the ethnic distribution of oral lichen planus in the sample, with patients of Indian subcontinent origin being over-represented, and Māori being under-represented.
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Affiliation(s)
- R R Kumar
- Oral and Maxillofacial Unit, Adelaide Dental Hospital, South Australia
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31
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Kumar A, Garg R, Yadav CL, Vatsya S, Kumar RR, Sugumar P, Chandran D, Mangamoorib LN, Bedarkar SN. Immune responses against recombinant tick antigen, Bm95, for the control of Rhipicephalus (Boophilus) microplus ticks in cattle. Vet Parasitol 2009; 165:119-24. [PMID: 19625129 DOI: 10.1016/j.vetpar.2009.06.030] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2009] [Revised: 06/20/2009] [Accepted: 06/23/2009] [Indexed: 11/17/2022]
Abstract
Immune responses against Bm95 recombinant cattle tick antigen and its protective efficacy for control of Rhipicephalus (Boophilus) microplus ticks were determined in experimental crossbred cow calves. Anti-Bm95 antibody titers, as assessed by indirect ELISA, in immunized calves ranged from 196.1+/-13.7 on day 0 to 7979.9+/-312.5 on day 110 post-primary immunization. The rise in antibody titer was statistically significant (p<0.01) throughout the study period. Besides this, constantly higher lymphoproliferative response (LPR), as assessed by lymphocyte stimulation test, was observed from 10 days post-immunization, but a positive LPR of antigen stimulated cells in immunized animals was recorded only on day 50 and day 70 post-immunization. Following challenge of immunized calves with larvae of R. microplus, significant increase (p<0.01) in rejection percentage, mean number of damaged ticks, mean percentage of dead ticks, and decrease in engorgement weight were recorded in immunized animals. Also, there were significant differences (p<0.01) in preoviposition period, oviposition period, egg mass weight and percent hatchability between the immunized and control calves. The percent reduction in number of adult females in vaccinated calves, reduction in mean weight of egg masses, percent reduction in mean weight and reduction in fertility of engorged females collected from vaccinated calves were determined and the efficacy of Bm95 recombinant cattle tick antigen was 81.27%.
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Affiliation(s)
- Amit Kumar
- Department of Veterinary Parasitology, College of Veterinary and Animal Sciences, G.B. Pant University of Agriculture and Technology, Pantnagar, Uttarakhand, India
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Mohan PM, Chetan PS, Kumar RR. Phosalone-Induced Changes in Regional Cholinesterase Activities in Rat Brain during Behavioral Tolerance. ACTA ACUST UNITED AC 2009. [DOI: 10.4314/afrrev.v3i2.43602] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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Mohanty B, Arul S, Kumar RR, Kumar M, Ramaswamy S. Metabolic syndrome--prevalence and significance of its detection in selected population in Pondicherry. Indian J Physiol Pharmacol 2008; 52:307-310. [PMID: 19552065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Obesity by itself is not an immediate lethal disease, however, it is a significant risk factor associated with a range of serious non-communicable diseases. Our aim is to find out the prevalence of metabolic syndrome in interns coming from higher socioeconomic class. Sixty one interns participated in the study. BMI, WHR and blood chemistry were performed. EGIR criteria were considered to identify the metabolic syndrome. According to EGIR criteria, insulin resistance was found in 24.5% cases and metabolic syndrome exists in 14.7% of overweight/obese interns. Insulin resistance as per HOMA-IR was found in 6% of those having metabolic syndrome. High diastolic blood pressure, low HDLc are prone to develop metabolic syndrome by six times where as an increase in WHR (central obesity) particularly in male are eleven times more prone to develop metabolic syndrome.
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Affiliation(s)
- Biswajit Mohanty
- Department of Biochemistry, Aarupadai Veedu Medical College and Hospital, Pondicherry 607 402.
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Konyalian VR, Rosing DK, Haukoos JS, Dixon MR, Sinow R, Bhaheetharan S, Stamos MJ, Kumar RR. The role of primary tumour resection in patients with stage IV colorectal cancer. Colorectal Dis 2007; 9:430-7. [PMID: 17504340 DOI: 10.1111/j.1463-1318.2007.01161.x] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
OBJECTIVE The management of stage IV colorectal cancer is controversial. Resection of the primary tumour to prevent obstruction, bleeding or perforation is the traditional approach, although survival benefit is undetermined. Management consisting of diverting ostomy, enteric bypass, laser recanalization or endoscopic stenting is an alternative to radical resection. The purpose of this study was to determine the role of resection of the primary tumour in patients with stage IV colorectal cancer, with specific attention paid to survival benefit and safety. METHOD This was a retrospective review of all stage IV colon and rectal cancer patients in our tumour registry between 1991 and 2002. Data collected included patient demographics, presenting symptoms, detail from the hospital course including diagnostic data and operative management, complications and survival time (days). Survival analysis was performed to assess the effect of primary tumour resection on long-term survival. RESULTS 109 patients were studied. Sixty-two (57%) patients (group I) underwent resection of the primary tumour, whereas 47 (43%) patients (group II) were managed without resection. Median survival times for groups I and II were 375 (IQR: 179-759) and 138 (IQR: 35-262) days respectively (P < 0.0001). After controlling for age, sex, tumour location and level of liver involvement as well as liver function, patients who underwent resection still survived longer (HR = 0.34, 95% CI: 0.21-0.55). CONCLUSION Palliative resection of the primary tumour plays an essential role in the management of stage IV colorectal cancer. Resection can offer increased survival and is indicated in certain patients with incurable disease. Limited metastatic tumour burden of the liver was associated with better survival in such patients.
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Affiliation(s)
- V R Konyalian
- Division of Colon and Rectal Surgery, Harbor-UCLA Medical Center, Torrance, California 90509, USA
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35
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Garg R, Kumar RR, Yadav CL, Banerjee PS. Duration of anthelmintic effect of three formulations of ivermectin (oral, injectable and pour-on) against multiple anthelmintic-resistant haemonchus contortus in sheep. Vet Res Commun 2007; 31:749-55. [PMID: 17237985 DOI: 10.1007/s11259-007-0054-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/30/2006] [Indexed: 11/24/2022]
Abstract
We report the results of investigations that were conducted in a sheep flock in Uttaranchal, India where repeated failure of anthelmintic medication was noted. The study revealed that Haemonchus contortus in sheep had developed resistance to benzimidazoles (fenbendazole, mebendazole and albendazole), imidazothiazole (levamisole) and salicylanide (rafoxanide), while it was fully susceptible to avermectins (ivermectin). Further, the suppression of nematode egg output in faeces of sheep naturally infected with multiple anthelmintic-resistant H. contortus following treatment with ivermectin tablet (0.4 mg/kg body weight (bw), orally), ivermectin injection (1% w/v, 0.2 mg/kg bw, subcutaneously) and ivermectin pour-on (0.5 w/v, 0.5 mg/kg bw) was also studied over a period of 10 weeks post treatment. It was noted that ivermectin tablet after initial clearance of infection (faecal egg count reduction 100%), could not prevent establishment of new patent natural infection for even a single day, while ivermectin pour-on and injection prevented the establishment of new infection for 7 and 14 days post treatment, respectively. Maximum protection period (duration for which mean faecal egg count of sheep reaches 500 eggs per gram of faeces or more) of 68 days was recorded in sheep treated with injectable ivermectin, followed by pour-on (60 days) and oral (53 days) preparations.
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Affiliation(s)
- R Garg
- Department of Veterinary Parasitology, College of Veterinary and Animal Sciences, G.B. P.U.A.& T., Pantnagar-263145, Uttaranchal, India.
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Kumar RR, Ramanappa MV, Satish P. Radiological quiz - musculoskeletal. Indian J Radiol Imaging 2006. [DOI: 10.4103/0971-3026.32391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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37
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Greilich PE, Okada K, Latham P, Kumar RR, Jessen ME. Aprotinin but not epsilon-aminocaproic acid decreases interleukin-10 after cardiac surgery with extracorporeal circulation: randomized, double-blind, placebo-controlled study in patients receiving aprotinin and epsilon-aminocaproic acid. Circulation 2001; 104:I265-9. [PMID: 11568067 DOI: 10.1161/hc37t1.094781] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
BACKGROUND Extracorporeal circulation induces a systemic inflammatory response, which may adversely affect organ function. One manifestation of this response is increased fibrinolysis. Antifibrinolytic drugs such as aprotinin and epsilon-aminocaproic acid have been effective in reducing fibrinolysis and blood loss after extracorporeal circulation; however, the effects of antifibrinolytic drugs on proinflammatory and anti-inflammatory mediators are not known. This study examined the effects of aprotinin and epsilon-aminocaproic acid on plasma levels of proinflammatory [interleukin-6 (IL-6)] and anti-inflammatory [interleukin-10 (IL-10)] cytokines during and after extracorporeal circulation. METHODS AND RESULTS Seventy-two patients undergoing coronary artery bypass grafting with extracorporeal circulation were randomly assigned in a double-blind study to receive high-dose aprotinin, epsilon-aminocaproic acid, or saline placebo. Plasma levels of IL-6 and IL-10 were measured at 5 time points before, during, and after extracorporeal circulation. In all 3 groups, both IL-6 and IL-10 rose significantly after institution of extracorporeal circulation and remained elevated through the first postoperative day. Compared with saline, aprotinin significantly reduced IL-10 (P=0.02) and peak IL-6 (P=0.02) after extracorporeal circulation. In contrast, none of the reductions in IL-6 and IL-10 by epsilon-aminocaproic acid achieved statistical significance. Both aprotinin and epsilon-aminocaproic acid decreased blood loss compared with saline, but there was no significant difference in the number of patients receiving blood products among the treatment groups. CONCLUSIONS These data suggest that aprotinin and epsilon-aminocaproic acid differ in their effects on the inflammatory response to extracorporeal circulation. Aprotinin but not epsilon-aminocaproic acid appears to attenuate the rise in the proinflammatory and anti-inflammatory cytokines IL-6 and IL-10. Further studies will be required to determine if these cytokine alterations translate to changes in clinical outcomes.
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Affiliation(s)
- P E Greilich
- Dallas Veterans Affairs Medical Center: Department of Anesthesiology and Pain Management, University of Texas Southwestern Medical Center, Dallas, USA
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38
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Abstract
Overexpession of EGFR has been reported in a variety of human cancers and serves as a target for diagnosis and therapy. In the case of breast cancer, about 48% EGFR and have poor clinical prognosis. Besides the prognostic factors like tumor size, nodal status, histological grade etc., which are significant in the management of breast cancer, EGFR level might also serve as an additional parameter. Immunocytochemical assay has been extensively used to study the expression of EGFR in various cancers. We have generated a panel of monoclonal antibodies against human EGFR with a view to evaluate their application for the diagnosis and therapy of these cancers. In the present study, an EIA has been developed using 2 monoclonal antibodies against hEGFR designated as CIBCNSH3 as the capture antibody and CIBCRGC1 as the detector antibody. EGFR isolated from MDA MB 468, a human breast carcinoma cell line, with high expression of EGFR and purified by conA affinity chromatography and HPLC has been used to develop the EIA procedure. Sera samples of 150 healthy women donors, of 300 breast cancer patients with different histological types of malignancies and of various other types of cancers have been analyzed. The control women had a range for serum EGFR level of 7-162 fmol/ml, whereas the 300 breast cancer patients studied had a range of 126-1587 fmol/ml with a cut off value of 180 fmol/ml. It is interesting to note that 67.5% of breast cancer patients had elevated levels of circulating EGFR. These results might suggest that serum EGFR level can be used as prognostic marker for breast cancer. The serum EGFR level will be compared with disease free interval and patient survival.
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Affiliation(s)
- R R Kumar
- Molecular Genetics Group, CDFD, Hyderabad 500 076, India
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39
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Mohan V, Deepa R, Kumar RR. Role of carotid intimal-medial thickness in assessment of pre-clinical atherosclerosis. Indian Heart J 2000; 52:395-9. [PMID: 11084778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023] Open
Affiliation(s)
- V Mohan
- M.V. Diabetes Specialities Centre & Madras Diabetes Research Foundation, Gopalapuram, Chennai
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Abstract
Apoptosis is associated with cascades of biochemical changes, including caspase activation, cleavage of poly-ADP-ribose polymerase (PARP), and fragmentation of genomic DNA. Knowledge of the kinetics of these changes in drug-induced apoptosis is important for designing pharmacodynamic studies. We have shown that the slow manifestation of apoptosis contributes to the delayed pharmacological effects of paclitaxel (Cancer Res. 58:2141-2148, 1998). The present study examined the timing of the biochemical changes in paclitaxel-induced apoptosis in human prostate PC3 cancer cells. After treatment with 20 nM paclitaxel, the fraction of cells that detached from the culture flask increased with time to reach 68% at the end of the 96-hour experiment. In contrast, the control samples showed <1% detachment. The attached and detached paclitaxel-treated cells showed different biochemical properties. The detached cells exhibited the full spectrum of apoptotic changes, whereas the attached cells only showed activation of caspase-3-like proteases but not PARP cleavage, DNA fragmentation, nor release of DNA fragments to the cytoplasm. Activation of caspases in the attached cells was several-fold lower and occurred at a later time (ie, 24 vs 12 hours) compared to the detached cells. In the detached cells, caspase activation was first detected at 12 hours and peaked at 36 hours, whereas PARP cleavage was first detected at 24 hours and was completed prior to 72 hours. In contrast, the extent of internucleosomal DNA fragmentation and the release of DNA-histone complex to the cytoplasm (both were first detected at 24 hours) were cumulative over time up to the last time point of 96 hours. In summary, in paclitaxel-induced apoptosis, caspase activation was followed with a 12-hour lag time by PARP cleavage, internucleosomal DNA fragmentation, and release of DNA-histone complex to the cytoplasm. There was no detectable lag time between PARP cleavage and DNA fragmentation. The observation that only the detached cells but not the attached cells showed the full spectrum of apoptotic changes suggests that detachment is either a part of the initiation/execution phases of apoptosis and/or is required for their completion.
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Affiliation(s)
- J L Au
- College of Pharmacy, The Ohio State University, 500 West 12th Aveneue, Columbus, OH 43210, USA.
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41
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Kumar RR, Shafiulla M, Sridhar H. Association of tuberculosis with malignancy at KIMIO--an oncology centre. INDIAN J PATHOL MICR 1999; 42:339-43. [PMID: 10862295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023] Open
Abstract
The association of tuberculosis and malignancy was studied at an oncology centre in Bangalore. The study period was from January 1981 to December 1995. A total of 8779 clinical material obtained from patients were screened for Mycobacterium tuberculosis infection. Out of which 675 were positive for acidfast bacilli, 385 from non malignant conditions and 290 from malignant conditions. Highest incidence is seen in Head and Neck cancer (42%) followed by Gastrointestinal cancer (14.1%), Lung cancer (13.8%), Haematological cancer (10.7%), Reproductive cancer (10.3%) and miscellaneous group (9%), Antibiogram of Mycobacterial cultures was done in 282 subjects. Resistance patterns to antitubercular drugs showed highest with Isonicotinic acid hydrochloride (INH) (17.7%), followed by para amino salicylic acid (PAS) (8.5%), Streptomycin (SM) (6.7%), Rifampicin (RIF) (4.6%) and Ethambutol (EM) (0.35%).
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Affiliation(s)
- R R Kumar
- Department of Microbiology, Kidwai Memorial Institute of Oncology, Bangalore
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42
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Tehrani HY, Petros JG, Kumar RR, Chu Q. Markers of severe appendicitis. Am Surg 1999; 65:453-5. [PMID: 10231216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
Appendicitis is a common surgical disease that often presents with vague, inconclusive symptoms. Despite the development of technologically advanced diagnostic modalities, perforation has usually occurred before the surgeon sees the patient. Morbidity, length of stay, and hospital costs associated with appendiceal perforation have not changed markedly in the past 50 years. To evaluate prognostic markers for severe appendicitis, we reviewed 18 years' worth of records of patients with appendicitis who were admitted to St. Elizabeth's Medical Center of Boston and found that the combination of history and physical examination has withstood the test of time. We found that advancing age, duration of symptoms for 36 or more hours, white blood cell count, shift left in white blood cell count, and fever were significantly related to severe appendicitis. An abnormal plain film was a marker if fever coexisted.
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Affiliation(s)
- H Y Tehrani
- Department of Surgery, St. Elizabeth's Medical Center of Boston, Massachusetts 02135, USA
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Udayachander M, Meenakshi A, Sivakumar N, Kumar RR, Shankar SG, Dean CJ, Modjtahedi H. Characterization of monoclonal antibody CIBCNSH3 generated to the human EGF receptor. Hum Antibodies 1999; 9:149-54. [PMID: 10690627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
Abstract
Monoclonal antibody CIBCNSH3 of IgG1 isotype has been generated against human epidermal growth factor receptor (EGFR) using MDA MB 468 breast carcinoma cell line as immunogen. Earlier studies have revealed that this MAb blocked growth factor-receptor interaction and thus inhibited cell proliferation and tumor growth. In the present paper, this MAb has been extensively characterized to evaluate its application in the study of human cancers. The results were compared with those obtained using a control MAb ICR 62 specific to EGFR. Competitive assay showed that this MAb bound to an epitope in the extracellular domain of the EGFR to which MAb ICR 62 also bound. This MAb immunoprecipitated the 170 kD glycoprotein. The specificity was further confirmed by the formation of a single discrete band in western blot analysis. By flow cytometric analysis this monoclonal antibody revealed high binding affinity with MDA MB 468 cells. By immunocytochemical assay, out of 35 breast tumors studied, 40% were found to exhibit strong cell membrane staining and in the case of 25 oral cancers studied, 56% were strong positive. High expression of EGFR was observed in MDA MB 468 cells and HN 5 cells. These studies clearly indicate that MAb CIBCNSH3 might prove useful to identify tumors with high level of expression of EGFR associated with poor prognosis.
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Affiliation(s)
- M Udayachander
- Department of Biochemical Oncology, Cancer Institute (W.I.A), Chennai, India
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Kumar RR, Kumar BR, Shafiulla M, Lakshmaiah KC, Sridhar H. Fusarium solani infection in a patient with acute myelogenous leukemia--a case report. INDIAN J PATHOL MICR 1997; 40:555-7. [PMID: 9444872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
Multiple necrotizing skin lesions due to Fusarium solani in an elderly man with acute myelogenous leukemia is described.
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Affiliation(s)
- R R Kumar
- Department of Microbiology and Medical Oncology, Kidwai Memorial Institute of Oncology, Bangalore
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Kumar RR, Jayshree RS, Sridhar H. Prevalence of HIV infection in voluntary blood donors and cancer patients. INDIAN J PATHOL MICR 1996; 39:187-9. [PMID: 8972146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
The HIV infection pattern amongst cancer patients and voluntary blood donors was studied at an oncology centre in South India. The study period was from May 1991 to March 1994. A total of 18,260 subjects were screened for HIV infection. Of which 14,266 were voluntary blood donors and 3994 were cancer patients. The HIV infection rate amongst voluntary blood donors and cancer patients was 0.042% (6/14266) and 0.4% (16/3994) giving a seropositivity rate of 0.42 and 4.0 per 1000 respectively.
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Affiliation(s)
- R R Kumar
- Department of Microbiology, Kidwai Memorial Institute of Oncology, Bangalore
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46
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Modlin IM, Kumar RR, Soroka CJ, Ahlman H, Nilsson O, Goldenring JR. Histamine as an intermediate growth factor in genesis of gastric ECLomas associated with hypergastrinemia in mastomys. Dig Dis Sci 1994; 39:1446-53. [PMID: 8026255 DOI: 10.1007/bf02088047] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Profound and sustained inhibition of gastric acid secretion has been associated with development of carcinoid tumors of the fundic enterochromaffin-like (ECL) cells in rodents. While ECL cell hyperplasia has been recognized in humans, the development of carcinoid tumors is rare and often confined to patients under treatment for gastrinoma related to the multiple endocrine neoplasia type I (MEN1) syndrome. The Mastomys was utilized as a model for the rapid induction of ECLomas by insurmountable acid secretory blockade induced by the pharmacologically irreversible H2-receptor antagonist, loxtidine. Loxtidine-induced ECL cell hyperplasia and neoplasia were compared in the absence of presence of cyproheptadine (0.5 mg/kg), an H1-receptor antagonist. Loxtidine administration resulted in a significant increase in ECL cell hyperplasia and neoplasia as well as an increase in ECL cell number, mucosal thickness, plasma gastrin levels, and stomach weight. Cyproheptadine ameliorated loxtidine-induced ECL cell hyperplasia and neoplasia and significantly decreased loxtidine-stimulated increases in ECL cell number. Nevertheless, cyproheptadine failed to alter the loxtidine-induced increase in plasma gastrin, stomach weight or mucosal height. The results indicate that cyproheptadine, an H1-receptor antagonist, inhibits loxtidine-induced ECL cell hyperplasia independent of any effects on serum gastrin.
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Affiliation(s)
- I M Modlin
- Department of Surgery, Yale University School of Medicine, New Haven, Connecticut 06510
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47
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Abstract
Despite the promising potential of video-assisted thoracoscopic pleurectomy in the treatment of pneumothoraces, conventional surgical intervention by a thoracotomy and pleurodesis with ligation/stapling of bullae remains the main form of treatment in many hospitals. It is with this in mind that we present our experience of 250 patients who have undergone surgical pleurodesis for treatment of a persistent or recurrent spontaneous pneumothorax. Of these patients, 74 had undergone parietal pleurectomy (PP), 93 pleural abrasion (PA), 60 transaxillary apical pleurectomy (TAP), and 23 had undergone apical pleurectomy via a posterolateral or submammary thoracotomy (APT). In general, there were few complications and we could show no discernible difference in the rate of complications between the groups. Despite there being no significant difference in the median period of postoperative intercostal tube drainage, there was a significant difference between the groups in the number of patients with a postoperative hospital stay equal to or greater than seven days and a postoperative serosanguinous volume loss greater than 500 ml. Those patients that had undergone parietal pleurectomy tended to remain in hospital for a longer period (> or = 7 days) and to have a heavier serosanguinous volume loss (> 500 ml). There have been no recurrent cases in the PP and APT groups. Their respective median follow up periods are 62 (range 15-83) and 32 (range 15-54) months. The median follow up period in the PA group was 42 (range 13-69) months, one recurrence occurred after 7 months.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- U U Nkere
- Department of Thoracic Surgery, Harefield Hospital, Middlesex, England
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Ahuja RC, Sinha N, Kumar RR, Saran RK. Effect of metoprolol and diltiazem on the total ischaemic burden in patients with chronic stable angina: a randomized controlled trial. Int J Cardiol 1993; 41:191-9. [PMID: 8288408 DOI: 10.1016/0167-5273(93)90115-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We conducted a randomised controlled trial to study the effects of metoprolol and diltiazem on the total ischaemic burden--sum of symptomatic and silent myocardial ischaemia, in 146 patients with stable angina pectoris. One-hundred thirty-four completed the study protocol. Sixty-eight patients received metoprolol (100 mg twice daily, n = 52, 50 mg twice daily, n = 16) while 66 received diltiazem (90 mg three times daily, n = 50, 60 mg three times daily, n = 16). The drugs were given for 4 weeks. The primary outcome variables were frequency and duration of total ischaemic burden, silent and symptomatic myocardial ischaemia. These were measured on 48 h of Holter monitoring. The reductions in duration and frequency of total ischaemic burden by metoprolol, 76% and 40%, respectively, were significantly higher than by diltiazem, 43% and 24%, respectively (P < 0.01 and P < 0.02). The frequency and duration of silent myocardial ischaemia, which constituted more than 80% of the total ischaemic burden in the two groups showed similar results. However, the reduction in frequency of symptomatic myocardial ischaemia only was significantly greater by metoprolol (63% than diltiazem (24%) as the difference in reduction of duration of symptomatic ischaemia was insignificant (85% vs. 75%; P > 0.05). Whether a greater reduction of total ischaemic burden by metoprolol as compared to diltiazem has any implications for prognosis in patients with chronic stable angina remains to be established.
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Affiliation(s)
- R C Ahuja
- Department of Medicine, King George Medical College, Lucknow, India
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49
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Modlin IM, Lewis JJ, Ahlman H, Bilchik AJ, Kumar RR. Management of unresectable malignant endocrine tumors of the pancreas. Surg Gynecol Obstet 1993; 176:507-518. [PMID: 8386860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Malignant endocrine tumors of the pancreas are a heterogenous group of tumors with a multipotential secretory capacity. The lesions are generally slow growing with a relatively long life expectancy from the time of diagnosis. Death results from a combination of local and metastatic disease and the sequelae of excess hormone secretion. While potentially successful curative resections are rare, long term survival is frequently possible based on the rate of growth and the inhibition of the bioactive effects of the secretory products of the tumor. Regional control with palliative surgical debulking and transcatheter arterial embolization of hepatic metastases has an important role in terms of symptomatic relief and long term survival. These tumors respond frequently to chemotherapy. Combination chemotherapy is more effective than single agent treatment. Preliminary information suggests that leukocyte interferon is useful in treatment, but this agent still requires careful prospective evaluation. While current data do not support the use of octreotide for an antitumor effect, it is capable of producing prompt and substantial symptomatic relief with minimal side effects in a large proportion of patients with functional malignant endocrine tumors of the pancreas. Many advances have been made in the recognition, diagnosis and management of patients with malignant endocrine tumors of the pancreas. Additional basic cellular research is necessary to define the molecular and cell biologic factors of these tumor cells. Particular facets that require further understanding include their basic cytogenetic abnormality, regulation of peptide production and the role of peptides and other growth factors in endocrine, paracrine and autocrine regulatory relationships. The answers to these questions will hopefully promulgate the discovery of improved cytotoxic agents, better peptide pharmacotherapeutic agents and improve the overall management of patients with unresectable malignant endocrine tumors of the pancreas.
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Affiliation(s)
- I M Modlin
- Department of Surgery, Yale University School of Medicine, New Haven 06510
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Reubi JC, Waser B, Horisberger U, Halter F, Soroka CJ, Kumar RR, Goldenring JR, Modlin IM. Identification of somatostatin and gastrin receptors on enterochromaffin-like cells from Mastomys gastric tumors. Endocrinology 1992; 131:166-72. [PMID: 1319317 DOI: 10.1210/endo.131.1.1319317] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Histamine-secreting enterochromaffin-like (ECL) cells of the gastric fundus of the Mastomys can develop into solid ECL cell tumors, either spontaneously or after induction by acid inhibition. We used this tumor tissue to perform in vitro receptor autoradiography for somatostatin (SS), gastrin, and substance-P, using, respectively, [125I]Tyr3-octreotide, [125I]gastrin-17, and [125I]Bolton-Hunter-labeled substance-P as radioligands. A high density of SS receptors was found in the nontumor fundic mucosa, where gastrin receptors were only barely detectable. However, in the group of spontaneously developing ECL cell tumors, a high density of SS and gastrin receptors was observed, homogeneously distributed in the tumor tissue. In addition, the loxtidine-induced ECL cell tumors expressed a high density of SS and gastrin receptors. The receptors were specific for the respective peptide and of high affinity, with a dissociation constant (Kd) of 0.90 nM for SS receptor and 0.87 nM for gastrin receptors. No substance-P receptors were detected on the ECL cell tumors, although they were present in the muscle layers of the Mastomys gastric fundus. These results demonstrate that ECL-derived tumors express receptors for both SS and gastrin. This observation is consistent with the proposal that there is substantial regulation of the histamine-producing ECL cell by SS and gastrin. The presence of gastrin receptors is compatible with a role for gastrin as a trophic factor in ECL cell hyperplasia and neoplasia. The expression of SS receptors may be of diagnostic and therapeutic relevance in the regulation of ECL function and neoplastic transformation.
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Affiliation(s)
- J C Reubi
- Sandoz Research Institute, Berne, Switzerland
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