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Večeřová K, Oravec M, Puranik S, Findurová H, Veselá B, Opoku E, Ofori-Amanfo KK, Klem K, Urban O, Sahu PP. Single and interactive effects of variables associated with climate change on wheat metabolome. Front Plant Sci 2022; 13:1002561. [PMID: 36299781 PMCID: PMC9589161 DOI: 10.3389/fpls.2022.1002561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 09/08/2022] [Indexed: 05/27/2023]
Abstract
One of the key challenges linked with future food and nutritional security is to evaluate the interactive effect of climate variables on plants' growth, fitness, and yield parameters. These interactions may lead to unique shifts in the morphological, physiological, gene expression, or metabolite accumulation patterns, leading to an adaptation response that is specific to future climate scenarios. To understand such changes, we exposed spring wheat to 7 regimes (3 single and 4 combined climate treatments) composed of elevated temperature, the enhanced concentration of CO2, and progressive drought stress corresponding to the predicted climate of the year 2100. The physiological and metabolic responses were then compared with the current climate represented by the year 2020. We found that the elevated CO2 (eC) mitigated some of the effects of elevated temperature (eT) on physiological performance and metabolism. The metabolite profiling of leaves revealed 44 key metabolites, including saccharides, amino acids, and phenolics, accumulating contrastingly under individual regimes. These metabolites belong to the central metabolic pathways that are essential for cellular energy, production of biosynthetic pathways precursors, and oxidative balance. The interaction of eC alleviated the negative effect of eT possibly by maintaining the rate of carbon fixation and accumulation of key metabolites and intermediates linked with the Krebs cycle and synthesis of phenolics. Our study for the first time revealed the influence of a specific climate factor on the accumulation of metabolic compounds in wheat. The current work could assist in the understanding and development of climate resilient wheat by utilizing the identified metabolites as breeding targets for food and nutritional security.
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Affiliation(s)
- Kristýna Večeřová
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Michal Oravec
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Swati Puranik
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Hana Findurová
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Barbora Veselá
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Emmanuel Opoku
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Agrosystems and Bioclimatology, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Kojo Kwakye Ofori-Amanfo
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czechia
| | - Karel Klem
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Otmar Urban
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
| | - Pranav Pankaj Sahu
- Laboratory of Ecological Plant Physiology, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
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Chakravartty N, Mohan KK, Lachagari VR, Nayaka SC, Shetty S, Satyavathi HT, Yadav RS, Kishor PK, Nagaraju M, Anoop T, Kumar MM, Kuriakose B, Singh OV, Sahu PP, Puranik S, Kaushal P, Srivastava RK. Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. Can J Biotech 2017. [DOI: 10.24870/cjb.2017-a256] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Abstract
The UK National Health Service has now specified a maximum interval of two weeks between general practitioner (GP) referral and specialist assessment for patients with suspected cancer. We examined progress through the cancer pathway in 160 patients with potentially curable cancers of the prostate, bladder, kidney and testis before implementation of this rule. Median intervals with interquartile ranges were quantified from the first GP consultation to hospital referral, then to the first hospital consultation, confirmation of diagnosis and definitive surgery. 34% of patients were seen at the hospital within two weeks of referral. The overall median interval from GP consultation to radical surgery was 137 days, the longest being for prostate cancer (median 244). For prostate, bladder and renal cancers the principal element of delay was from the time of diagnosis to surgery (76, 73 and 26 days respectively). These results indicate that, under the two-weeks-wait rule, 2 out of every 3 patients achieve earlier initial assessment. However, the overall delay will not be substantially reduced without concomitant increases in diagnostic facilities, theatre time and human resources.
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Affiliation(s)
- K R Subramonian
- Department of Urology, Medway Maritime Hospital, Windmill Road, Gillingham ME7 5NY, UK
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Puranik S, Kam J, Sahu PP, Yadav R, Srivastava RK, Ojulong H, Yadav R. Harnessing Finger Millet to Combat Calcium Deficiency in Humans: Challenges and Prospects. Front Plant Sci 2017; 8:1311. [PMID: 28798761 PMCID: PMC5526919 DOI: 10.3389/fpls.2017.01311] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 07/12/2017] [Indexed: 05/07/2023]
Abstract
Humans require more than 20 mineral elements for healthy body function. Calcium (Ca), one of the essential macromineral, is required in relatively large quantities in the diet for maintaining a sound overall health. Young children, pregnant and nursing women in marginalized and poorest regions of the world, are at highest risk of Ca malnutrition. Elderly population is another group of people most commonly affected by Ca deficiency mainly in the form of osteoporosis and osteopenia. Improved dietary intake of Ca may be the most cost-effective way to meet such deficiencies. Finger millet [Eleusine coracana (L.) Gaertn.], a crop with inherently higher Ca content in its grain, is an excellent candidate for understanding genetic mechanisms associated with Ca accumulation in grain crops. Such knowledge will also contribute toward increasing Ca contents in other staple crops consumed on daily basis using plant-breeding (also known as biofortification) methods. However, developing Ca-biofortified finger millet to reach nutritional acceptability faces various challenges. These include identifying and translating the high grain Ca content to an adequately bioavailable form so as to have a positive impact on Ca malnutrition. In this review, we assess some recent advancements and challenges for enrichment of its Ca value and present possible inter-disciplinary prospects for advancing the actual impact of Ca-biofortified finger millet.
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Affiliation(s)
- Swati Puranik
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, United Kingdom
| | - Jason Kam
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, United Kingdom
| | - Pranav P. Sahu
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, United Kingdom
| | - Rama Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, United Kingdom
| | - Rakesh K. Srivastava
- International Crops Research Institute for the Semi-Arid TropicsPatancheru, India
| | - Henry Ojulong
- International Crops Research Institute for the Semi-Arid TropicsNairobi, Kenya
| | - Rattan Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, United Kingdom
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Gupta SM, Arora S, Mirza N, Pande A, Lata C, Puranik S, Kumar J, Kumar A. Finger Millet: A "Certain" Crop for an "Uncertain" Future and a Solution to Food Insecurity and Hidden Hunger under Stressful Environments. Front Plant Sci 2017; 8:643. [PMID: 28487720 PMCID: PMC5404511 DOI: 10.3389/fpls.2017.00643] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2016] [Accepted: 04/10/2017] [Indexed: 05/05/2023]
Abstract
Crop growth and productivity has largely been vulnerable to various abiotic and biotic stresses that are only set to be compounded due to global climate change. Therefore developing improved varieties and designing newer approaches for crop improvement against stress tolerance have become a priority now-a-days. However, most of the crop improvement strategies are directed toward staple cereals such as rice, wheat, maize etc., whereas attention on minor cereals such as finger millet [Eleusine coracana (L.) Gaertn.] lags far behind. It is an important staple in several semi-arid and tropical regions of the world with excellent nutraceutical properties as well as ensuring food security in these areas even during harsh environment. This review highlights the importance of finger millet as a model nutraceutical crop. Progress and prospects in genetic manipulation for the development of abiotic and biotic stress tolerant varieties is also discussed. Although limited studies have been conducted for genetic improvement of finger millets, its nutritional significance in providing minerals, calories and protein makes it an ideal model for nutrition-agriculture research. Therefore, improved genetic manipulation of finger millets for resistance to both abiotic and biotic stresses, as well as for enhancing nutrient content will be very effective in millet improvement. Key message: Apart from the excellent nutraceutical value of finger millet, its ability to tolerate various abiotic stresses and resist pathogens make it an excellent model for exploring vast genetic and genomic potential of this crop, which provide us a wide choice for developing strategies for making climate resilient staple crops.
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Affiliation(s)
- Sanjay Mohan Gupta
- Molecular Biology and Genetic Engineering Laboratory, Defence Institute of Bio-Energy Research, Defence Research and Development OrganisationHaldwani, India
| | - Sandeep Arora
- Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G. B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Neelofar Mirza
- Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G. B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Anjali Pande
- Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G. B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Charu Lata
- Council of Scientific and Industrial Research-National Botanical Research InstituteLucknow, India
| | - Swati Puranik
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, UK
| | - J. Kumar
- Department of Plant Pathology, College of Agriculture, G. B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Anil Kumar
- Department of Molecular Biology and Genetic Engineering, College of Basic Sciences and Humanities, G. B. Pant University of Agriculture and TechnologyPantnagar, India
- *Correspondence: Anil Kumar,
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Kam J, Puranik S, Yadav R, Manwaring HR, Pierre S, Srivastava RK, Yadav RS. Dietary Interventions for Type 2 Diabetes: How Millet Comes to Help. Front Plant Sci 2016; 7:1454. [PMID: 27729921 PMCID: PMC5037128 DOI: 10.3389/fpls.2016.01454] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 09/12/2016] [Indexed: 05/04/2023]
Abstract
Diabetes has become a highly problematic and increasingly prevalent disease world-wide. It has contributed toward 1.5 million deaths in 2012. Management techniques for diabetes prevention in high-risk as well as in affected individuals, beside medication, are mainly through changes in lifestyle and dietary regulation. Particularly, diet can have a great influence on life quality for those that suffer from, as well as those at risk of, diabetes. As such, considerations on nutritional aspects are required to be made to include in dietary intervention. This review aims to give an overview on the general consensus of current dietary and nutritional recommendation for diabetics. In light of such recommendation, the use of plant breeding, conventional as well as more recently developed molecular marker-based breeding and biofortification, are discussed in designing crops with desired characteristics. While there are various recommendations available, dietary choices are restricted by availability due to geo-, political-, or economical- considerations. This particularly holds true for countries such as India, where 65 million people (up from 50 million in 2010) are currently diabetic and their numbers are rising at an alarming rate. Millets are one of the most abundant crops grown in India as well as in Africa, providing a staple food source for many poorest of the poor communities in these countries. The potentials of millets as a dietary component to combat the increasing prevalence of global diabetes are highlighted in this review.
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Affiliation(s)
- Jason Kam
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
| | - Swati Puranik
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
| | - Rama Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
| | - Hanna R. Manwaring
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
| | - Sandra Pierre
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
| | - Rakesh K. Srivastava
- International Crops Research Institute for the Semi-Arid Tropics, PatancheruIndia
| | - Rattan S. Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Gogerddan, AberystwythUK
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Kumar A, Metwal M, Kaur S, Gupta AK, Puranik S, Singh S, Singh M, Gupta S, Babu BK, Sood S, Yadav R. Nutraceutical Value of Finger Millet [Eleusine coracana (L.) Gaertn.], and Their Improvement Using Omics Approaches. Front Plant Sci 2016; 7:934. [PMID: 27446162 PMCID: PMC4925701 DOI: 10.3389/fpls.2016.00934] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Accepted: 06/13/2016] [Indexed: 05/22/2023]
Abstract
The science of nutritional biology has progressed extensively over the last decade to develop food-based nutraceuticals as a form of highly personalized medicine or therapeutic agent. Finger millet [Eleusine coracana (L.) Gaertn.] is a crop with potentially tremendous but under-explored source of nutraceutical properties as compared to other regularly consumed cereals. In the era of growing divide and drawback of nutritional security, these characteristics must be harnessed to develop finger millet as a novel functional food. In addition, introgression of these traits into other staple crops can improve the well-being of the general population on a global scale. The objective of this review is to emphasize the importance of biofortification of finger millet in context of universal health and nutritional crisis. We have specifically highlighted the role that recent biotechnological advancements have to offer for enrichment of its nutritional value and how these developments can commission to the field of nutritional biology by opening new avenues for future research.
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Affiliation(s)
- Anil Kumar
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Mamta Metwal
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Sanveen Kaur
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Atul K. Gupta
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Swati Puranik
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, UK
| | - Sadhna Singh
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Manoj Singh
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - Supriya Gupta
- Department of Molecular Biology and Genetic Engineering, G.B. Pant University of Agriculture and TechnologyPantnagar, India
| | - B. K. Babu
- ICAR–Vivekananda Institute of Hill AgricultureAlmora, India
| | - Salej Sood
- ICAR–Vivekananda Institute of Hill AgricultureAlmora, India
| | - Rattan Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth UniversityAberystwyth, UK
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Sahu PP, Sharma N, Puranik S, Chakraborty S, Prasad M. Tomato 26S Proteasome subunit RPT4a regulates ToLCNDV transcription and activates hypersensitive response in tomato. Sci Rep 2016; 6:27078. [PMID: 27252084 PMCID: PMC4890432 DOI: 10.1038/srep27078] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Accepted: 05/09/2016] [Indexed: 01/05/2023] Open
Abstract
Involvement of 26S proteasomal subunits in plant pathogen-interactions, and the roles of each subunit in independently modulating the activity of many intra- and inter-cellular regulators controlling physiological and defense responses of a plant were well reported. In this regard, we aimed to functionally characterize a Solanum lycopersicum 26S proteasomal subunit RPT4a (SlRPT4) gene, which was differentially expressed after Tomato leaf curl New Delhi virus (ToLCNDV) infection in tolerant cultivar H-88-78-1. Molecular analysis revealed that SlRPT4 protein has an active ATPase activity. SlRPT4 could specifically bind to the stem-loop structure of intergenic region (IR), present in both DNA-A and DNA-B molecule of the bipartite viral genome. Lack of secondary structure in replication-associated gene fragment prevented formation of DNA-protein complex suggesting that binding of SlRPT4 with DNA is secondary structure specific. Interestingly, binding of SlRPT4 to IR inhibited the function of RNA Pol-II and subsequently reduced the bi-directional transcription of ToLCNDV genome. Virus-induced gene silencing of SlRPT4 gene incited conversion of tolerant attributes of cultivar H-88-78-1 into susceptibility. Furthermore, transient overexpression of SlRPT4 resulted in activation of programmed cell death and antioxidant enzymes system. Overall, present study highlights non-proteolytic function of SlRPT4 and their participation in defense pathway against virus infection in tomato.
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Affiliation(s)
- Pranav Pankaj Sahu
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.,School of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India
| | - Namisha Sharma
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Swati Puranik
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Supriya Chakraborty
- School of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India
| | - Manoj Prasad
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
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Drost DR, Puranik S, Novaes E, Novaes CRDB, Dervinis C, Gailing O, Kirst M. Genetical genomics of Populus leaf shape variation. BMC Plant Biol 2015; 15:166. [PMID: 26122556 PMCID: PMC4486686 DOI: 10.1186/s12870-015-0557-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Accepted: 06/16/2015] [Indexed: 05/04/2023]
Abstract
BACKGROUND Leaf morphology varies extensively among plant species and is under strong genetic control. Mutagenic screens in model systems have identified genes and established molecular mechanisms regulating leaf initiation, development, and shape. However, it is not known whether this diversity across plant species is related to naturally occurring variation at these genes. Quantitative trait locus (QTL) analysis has revealed a polygenic control for leaf shape variation in different species suggesting that loci discovered by mutagenesis may only explain part of the naturally occurring variation in leaf shape. Here we undertook a genetical genomics study in a poplar intersectional pseudo-backcross pedigree to identify genetic factors controlling leaf shape. The approach combined QTL discovery in a genetic linkage map anchored to the Populus trichocarpa reference genome sequence and transcriptome analysis. RESULTS A major QTL for leaf lamina width and length:width ratio was identified in multiple experiments that confirmed its stability. A transcriptome analysis of expanding leaf tissue contrasted gene expression between individuals with alternative QTL alleles, and identified an ADP-ribosylation factor (ARF) GTPase (PtARF1) as a candidate gene for regulating leaf morphology in this pedigree. ARF GTPases are critical elements in the vesicular trafficking machinery. Disruption of the vesicular trafficking function of ARF by the pharmacological agent Brefeldin A (BFA) altered leaf lateral growth in the narrow-leaf P. trichocarpa suggesting a molecular mechanism of leaf shape determination. Inhibition of the vesicular trafficking processes by BFA interferes with cycling of PIN proteins and causes their accumulation in intercellular compartments abolishing polar localization and disrupting normal auxin flux with potential effects on leaf expansion. CONCLUSIONS In other model systems, ARF proteins have been shown to control the localization of auxin efflux carriers, which function to establish auxin gradients and apical-basal cell polarity in developing plant organs. Our results support a model where PtARF1 transcript abundance changes the dynamics of endocytosis-mediated PIN localization in leaf cells, thus affecting lateral auxin flux and subsequently lamina leaf expansion. This suggests that evolution of differential cellular polarity plays a significant role in leaf morphological variation observed in subgenera of genus Populus.
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Affiliation(s)
- Derek R Drost
- School of Forest Resources and Conservation, University of Florida, P.O. Box 110410, Gainesville, FL, 32611, USA.
- Plant Molecular and Cellular Biology Graduate Program, University of Florida, P.O. Box 110690, Gainesville, FL, 32611, USA.
- Seminis, Inc., 37437 State Highway 16, Woodland, CA, 95695, USA.
| | - Swati Puranik
- School of Forest Resourse and Environmental Sciences, Michigan Technological University, Houghton, MI, 49931, USA.
| | - Evandro Novaes
- School of Forest Resources and Conservation, University of Florida, P.O. Box 110410, Gainesville, FL, 32611, USA.
- Escola de Agronomia, Universidade Federal de Goiás, Rodovia Goiânia/Nova Veneza, Km0 - Caixa Postal 131, Goiânia, GO, 74690-900, Brazil.
| | - Carolina R D B Novaes
- School of Forest Resources and Conservation, University of Florida, P.O. Box 110410, Gainesville, FL, 32611, USA.
- Escola de Agronomia, Universidade Federal de Goiás, Rodovia Goiânia/Nova Veneza, Km0 - Caixa Postal 131, Goiânia, GO, 74690-900, Brazil.
| | - Christopher Dervinis
- School of Forest Resources and Conservation, University of Florida, P.O. Box 110410, Gainesville, FL, 32611, USA.
| | - Oliver Gailing
- School of Forest Resourse and Environmental Sciences, Michigan Technological University, Houghton, MI, 49931, USA.
| | - Matias Kirst
- School of Forest Resources and Conservation, University of Florida, P.O. Box 110410, Gainesville, FL, 32611, USA.
- Plant Molecular and Cellular Biology Graduate Program, University of Florida, P.O. Box 110690, Gainesville, FL, 32611, USA.
- University of Florida Genetics Institute, University of Florida, P.O. Box 103610, Gainesville, FL, 32611, USA.
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Sahu PP, Pandey G, Sharma N, Puranik S, Muthamilarasan M, Prasad M. Epigenetic mechanisms of plant stress responses and adaptation. Plant Cell Rep 2013; 32:1151-9. [PMID: 23719757 DOI: 10.1007/s00299-013-1462-x] [Citation(s) in RCA: 134] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Revised: 05/20/2013] [Accepted: 05/20/2013] [Indexed: 05/20/2023]
Abstract
Epigenetics has become one of the hottest topics of research in plant functional genomics since it appears promising in deciphering and imparting stress-adaptive potential in crops and other plant species. Recently, numerous studies have provided new insights into the epigenetic control of stress adaptation. Epigenetic control of stress-induced phenotypic response of plants involves gene regulation. Growing evidence suggest that methylation of DNA in response to stress leads to the variation in phenotype. Transposon mobility, siRNA-mediated methylation and host methyltransferase activation have been implicated in this process. This review presents the current status of epigenetics of plant stress responses with a view to use this knowledge towards engineering plants for stress tolerance.
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Affiliation(s)
- Pranav Pankaj Sahu
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110 067, India
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Sahu PP, Rai NK, Puranik S, Roy A, Khan M, Prasad M. Dynamics of defense-related components in two contrasting genotypes of tomato upon infection with Tomato Leaf Curl New Delhi Virus. Mol Biotechnol 2013; 52:140-50. [PMID: 22161255 DOI: 10.1007/s12033-011-9481-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Tomato leaf curl virus (ToLCV) disease is a serious threat for tomato cultivation in the tropics and subtropics. Despite serious efforts no immune commercial varieties or F(1) hybrids are available till date. In this study, the interaction between Solanum lycopersicum and ToLCV was characterized on molecular and biochemical basis. RNA silencing mediated by short interfering RNA (siRNA) and reactive oxygen species (ROS) has been proposed as central components of plant adaptation to several stresses. A comparative RNA interference study between two contrasting tomato genotypes, LA1777 (tolerant) and 15SBSB (susceptible) infected with Tomato Leaf Curl New Delhi Virus (ToLCNDV) revealed relatively higher accumulation of siRNA in the leaves of tolerant genotype. In LA1777, ToLCNDV produced chlorotic as well as necrotic areas at the inoculation sites 5-10 days post-inoculation. Caspase-9- and caspase-3-like activities were significantly increased in response to ToLCNDV infection in LA1777 at inoculated region. Activities of antioxidant enzymes involved in the detoxification of ROS were examined in both systemic and localized area of infection, and their expression level was further validated through quantitative real-time PCR of the corresponding transcripts. Expression patterns of three genes encoding pathogenesis-related proteins showed higher accumulation in tolerant genotype. Tolerance against the ToLCNDV in LA1777 can be attributed to the higher siRNA accumulation, localized cell death, altered levels of antioxidant enzymes and activation of pathogenesis-related genes at different durations of virus infection. Based on these direct and indirect evidences, we have proposed a putative mechanism for ToLCNDV tolerance in the tolerant genotype.
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Affiliation(s)
- Pranav Pankaj Sahu
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, JNU Campus, New Delhi 110 067, India
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Abstract
Two cDNA clones, encoding Aluminum-responsive wali1 and wali5, were identified in dehydration stress-specific cDNA library from wheat. Their sequence variations and structural dissimilarities indicated them to be non-homologous genes. Expression of both genes was induced by various abiotic stresses as well as in response to plant hormones and oxidative molecules. Further, they were expressed differentially in shoot and root tissues of wheat seedlings, their transcripts being specifically abundant in roots. Previously characterized as being only Aluminum treatment induced, this report proposes them as novel candidates for stress-responsive studies.
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Affiliation(s)
- Bharti Garg
- International Centre for Genetic Engineering and Biotechnology; Aruna Asaf Ali Marg; New Delhi, India
| | - Swati Puranik
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; New Delhi, India
| | - Narendra Tuteja
- International Centre for Genetic Engineering and Biotechnology; Aruna Asaf Ali Marg; New Delhi, India
| | - Manoj Prasad
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; New Delhi, India
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Sharma N, Sahu PP, Puranik S, Prasad M. Recent Advances in Plant–Virus Interaction with Emphasis on Small Interfering RNAs (siRNAs). Mol Biotechnol 2012; 55:63-77. [DOI: 10.1007/s12033-012-9615-7] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Sahu PP, Puranik S, Khan M, Prasad M. Recent advances in tomato functional genomics: utilization of VIGS. Protoplasma 2012; 249:1017-27. [PMID: 22669349 DOI: 10.1007/s00709-012-0421-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2012] [Accepted: 05/17/2012] [Indexed: 05/07/2023]
Abstract
Tomato unquestionably occupies a significant position in world vegetable production owing to its world-wide consumption. The tomato genome sequencing efforts being recently concluded, it becomes more imperative to recognize important functional genes from this treasure of generated information for improving tomato yield. While much progress has been made in conventional tomato breeding, post-transcriptional gene silencing (PTGS) offers an alternative approach for advancement of tomato functional genomics. In particular, virus-induced gene silencing (VIGS) is increasingly being used as rapid, reliable, and lucrative screening strategy to elucidate gene function. In this review, we focus on the recent advancement made through exploiting the potential of this technique for manipulating different agronomically important traits in tomato by discussing several case studies.
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Affiliation(s)
- Pranav Pankaj Sahu
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, JNU Campus, New Delhi, 110067, India
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15
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Mishra AK, Puranik S, Bahadur RP, Prasad M. The DNA-binding activity of an AP2 protein is involved in transcriptional regulation of a stress-responsive gene, SiWD40, in foxtail millet. Genomics 2012; 100:252-63. [PMID: 22771384 DOI: 10.1016/j.ygeno.2012.06.012] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2012] [Revised: 06/12/2012] [Accepted: 06/25/2012] [Indexed: 11/20/2022]
Abstract
A differentially expressed transcript, encoding a putative WD protein (Setaria italica WD40; SiWD40), was identified in foxtail millet. Tertiary structure modeling revealed that its C-terminus possesses eight blade β-propeller architecture. Its N-terminal has three α-helices and two 3(10)-helices and was highly induced by different abiotic stresses. The SiWD40:GFP fusion protein was nuclear localized. Promoter analysis showed the presence of many cis-acting elements, including two dehydration responsive elements (DRE). A stress-responsive SiAP2 domain containing protein could specifically bind to these elements in the SiWD40 promoter. Thus, for the first time, we report that DREs probably regulate expression of SiWD40 during environmental stress. Molecular docking analysis revealed that the circumference of the β-propeller structure was involved in an interaction with a SiCullin4 protein, supporting the adaptability of SiWD40 to act as a scaffold. Our study thus provides a vital clue for near future research on the stress-regulation of WD proteins.
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Affiliation(s)
- Awdhesh Kumar Mishra
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
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Puranik S, Sahu PP, Srivastava PS, Prasad M. NAC proteins: regulation and role in stress tolerance. Trends Plant Sci 2012; 17:369-81. [PMID: 22445067 DOI: 10.1016/j.tplants.2012.02.004] [Citation(s) in RCA: 587] [Impact Index Per Article: 48.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2011] [Revised: 01/31/2012] [Accepted: 02/16/2012] [Indexed: 05/17/2023]
Abstract
The plant-specific NAC (NAM, ATAF1,2 and CUC2) proteins constitute a major transcription factor family renowned for their roles in several developmental programs. Despite their highly conserved DNA-binding domains, their remarkable diversification across plants reflects their numerous functions. Lately, they have received much attention as regulators in various stress signaling pathways which may include interplay of phytohormones. This review summarizes the recent progress in research on NACs highlighting the proteins' potential for engineering stress tolerance against various abiotic and biotic challenges. We discuss regulatory components and targets of NAC proteins in the context of their prospective role for crop improvement strategies via biotechnological intervention.
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Affiliation(s)
- Swati Puranik
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
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Puranik S, Bahadur RP, Srivastava PS, Prasad M. Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv]. Mol Biotechnol 2012; 49:138-50. [PMID: 21312005 DOI: 10.1007/s12033-011-9385-7] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The plant-specific NAC (NAM, ATAF, and CUC) transcription factors have diverse role in development and stress regulation. A transcript encoding NAC protein, termed SiNAC was identified from a salt stress subtractive cDNA library of S. italica seedling (Puranik et al., J Plant Physiol 168:280-287, 2011). This single/low copy gene containing four exons and four introns within the genomic-sequence encoded a protein of 462 amino acids. Structural analysis revealed that highly divergent C terminus contains a transmembrane domain. The NAC domain consisted of a twisted antiparallel beta-sheet packing against N terminal alpha helix on one side and a shorter helix on the other side. The domain was predicted to homodimerize and control DNA-binding specificity. The physicochemical features of the SiNAC homodimer interface justified the dimeric form of the predicted model. A 1539 bp fragment upstream to the start codon of SiNAC gene was cloned and in silico analysis revealed several putative cis-acting regulatory elements within the promoter sequence. Transactivation analysis indicated that SiNAC activated expression of reporter gene and the activation domain lied at the C terminal. The SiNAC:GFP was detected in the nucleus and cytoplasm while SiNAC ΔC(1-158):GFP was nuclear localized in onion epidermal cells. SiNAC transcripts mostly accumulated in young spikes and were strongly induced by dehydration, salinity, ethephon, and methyl jasmonate. These results suggest that SiNAC encodes a membrane associated NAC-domain protein that may function as a transcriptional activator in response to stress and developmental regulation in plants.
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Affiliation(s)
- Swati Puranik
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi 110067, India
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Puranik S, Kumar K, Srivastava PS, Prasad M. Electrophoretic mobility shift assay reveals a novel recognition sequence for Setaria italica NAC protein. Plant Signal Behav 2011; 6:1588-90. [PMID: 21918373 PMCID: PMC3256391 DOI: 10.4161/psb.6.10.17130] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The NAC (NAM/ATAF1,2/CUC2) proteins are among the largest family of plant transcription factors. Its members have been associated with diverse plant processes and intricately regulate the expression of several genes. Inspite of this immense progress, knowledge of their DNA-binding properties are still limited. In our recent publication,1 we reported isolation of a membrane-associated NAC domain protein from Setaria italica (SiNAC). Transactivation analysis revealed that it was a functionally active transcription factor as it could stimulate expression of reporter genes in vivo. Truncations of the transmembrane region of the protein lead to its nuclear localization. Here we describe expression and purification of SiNAC DNA-binding domain. We further report identification of a novel DNA-binding site, [C/G][A/T][T/A][G/C]TC[C/G][A/T][C/G][G/C] for SiNAC by electrophoretic mobility shift assay. The SiNAC-GST protein could bind to the NAC recognition sequence in vitro as well as to sequences where some bases had been reshuffled. The results presented here contribute to our understanding of the DNA-binding specificity of SiNAC protein.
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Affiliation(s)
- Swati Puranik
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; Jamia Hamdard, New Delhi India
- Department of Biotechnology; Faculty of Science; Jamia Hamdard, New Delhi India
| | - Karunesh Kumar
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; Jamia Hamdard, New Delhi India
| | - Prem S Srivastava
- Department of Biotechnology; Faculty of Science; Jamia Hamdard, New Delhi India
| | - Manoj Prasad
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; Jamia Hamdard, New Delhi India
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Gupta S, Kumari K, Das J, Lata C, Puranik S, Prasad M. Development and utilization of novel intron length polymorphic markers in foxtail millet (Setaria italica (L.) P. Beauv.). Genome 2011; 54:586-602. [PMID: 21751869 DOI: 10.1139/g11-020] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Introns are noncoding sequences in a gene that are transcribed to precursor mRNA but spliced out during mRNA maturation and are abundant in eukaryotic genomes. The availability of codominant molecular markers and saturated genetic linkage maps have been limited in foxtail millet (Setaria italica (L.) P. Beauv.). Here, we describe the development of 98 novel intron length polymorphic (ILP) markers in foxtail millet using sequence information of the model plant rice. A total of 575 nonredundant expressed sequence tag (EST) sequences were obtained, of which 327 and 248 unique sequences were from dehydration- and salinity-stressed suppression subtractive hybridization libraries, respectively. The BLAST analysis of 98 EST sequences suggests a nearly defined function for about 64% of them, and they were grouped into 11 different functional categories. All 98 ILP primer pairs showed a high level of cross-species amplification in two millets and two nonmillets species ranging from 90% to 100%, with a mean of ∼97%. The mean observed heterozygosity and Nei's average gene diversity 0.016 and 0.171, respectively, established the efficiency of the ILP markers for distinguishing the foxtail millet accessions. Based on 26 ILP markers, a reasonable dendrogram of 45 foxtail millet accessions was constructed, demonstrating the utility of ILP markers in germplasm characterizations and genomic relationships in millets and nonmillets species.
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Affiliation(s)
- Sarika Gupta
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
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Puranik S, Jha S, Srivastava PS, Sreenivasulu N, Prasad M. Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress. J Plant Physiol 2011; 168:280-7. [PMID: 20708821 DOI: 10.1016/j.jplph.2010.07.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2010] [Revised: 07/13/2010] [Accepted: 07/13/2010] [Indexed: 05/03/2023]
Abstract
Soil salinity represents a major abiotic stress that adversely affects crop growth and productivity. In this study, 21-day-old seedlings of two foxtail millet (Setaria italica) cultivars differing in salt tolerance were found to also differ in lipid peroxidation, ion balance and activity of antioxidative enzymes (glutathione reductase and catalase) under short-term salinity stress (250 mM NaCl for 1-48 h). With the aim of better understanding the molecular mechanisms underlying plant responses to short-term salinity stress, two suppression subtractive hybridization cDNA libraries (forward and reverse) were constructed of these cultivars. A total of 249 non-redundant ESTs was identified by random EST sequencing and grouped into 11 functional categories. Macroarray analysis of these clones showed that 159 (63.9%) were differentially expressed (≥ 2-fold) in response to salinity stress, with 115 (72.3%) up and 44 (27.7%) down-regulated. A data search of transcriptional profiling under salinity stress in other species revealed that 81 (51%) of the 159 differentially expressed transcripts found in foxtail millet have not been reported in previous studies. Hence, these new transcripts may represent untapped gene sources allowing specific responses to short-term salt-stress in an orphan crop known to possess a natural adaptation capacity to abiotic stress. Quantitative real-time PCR of 21 highly up-regulated (≥ 2.5-fold) transcripts showed temporal variation in expression in both cultivars under salinity. Among them, several transcription factors and signalling genes were preferentially expressed in the tolerant cultivar. These results suggest that the tolerant cultivar possesses more effective signal-perception mechanisms for metabolic adjustments in plants under harsh saline conditions. Our findings provide evidence that the unknown genes identified in this study, in addition to several known genes, may play important roles in stress tolerance mechanisms present in foxtail millet.
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Affiliation(s)
- Swati Puranik
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
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Pai PNS, Rao GK, Murthy MS, Agarwal A, Puranik S. Simultaneous determination of salbutamol sulphate and bromhexine hydrochloride in tablets by reverse phase liquid chromatography. Indian J Pharm Sci 2009; 71:53-5. [PMID: 20177457 PMCID: PMC2810049 DOI: 10.4103/0250-474x.51957] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2007] [Revised: 07/01/2008] [Accepted: 01/19/2009] [Indexed: 12/01/2022] Open
Abstract
A simple reverse phase liquid chromatographic method has been developed and subsequently validated for simultaneous determination of salbutamol sulphate and bromhexine hydrochloride. The separation was carried out using a mobile phase consisting of acetonitrile, methanol and phosphate buffer, pH 4 in the ratio 60:20:20 v/v. The column used was SS Wakosil-II C-18 with a flow rate of 1 ml/min and UV detection at 224 nm. The described method was linear over a concentration range of 10-110 mug/ml and 20-140 mug/ml for the assay of salbutamol sulphate and bromhexine hydrochloride, respectively. The mean recovery was found to be 95-105% for salbutamol sulphate and 96.2-102.1% for bromhexine hydrochloride when determined at five different levels.
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Affiliation(s)
- P. N. S Pai
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560 027, India
| | - G. K. Rao
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560 027, India
| | - M. S. Murthy
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560 027, India
| | - A. Agarwal
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560 027, India
| | - S. Puranik
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560 027, India
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Jayaraman A, Puranik S, Rai NK, Vidapu S, Sahu PP, Lata C, Prasad M. cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.). Mol Biotechnol 2008. [PMID: 18592419 DOI: 10.1007/s12033-008-90814] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023]
Abstract
Plant growth and productivity are affected by various abiotic stresses such as heat, drought, cold, salinity, etc. The mechanism of salt tolerance is one of the most important subjects in plant science as salt stress decreases worldwide agricultural production. In our present study we used cDNA-AFLP technique to compare gene expression profiles of a salt tolerant and a salt-sensitive cultivar of foxtail millet (Seteria italica) in response to salt stress to identify early responsive differentially expressed transcripts accumulated upon salt stress and validate the obtained result through quantitative real-time PCR (qRT-PCR). The expression profile was compared between a salt tolerant (Prasad) and susceptible variety (Lepakshi) of foxtail millet in both control condition (L0 and P0) and after 1 h (L1 and P1) of salt stress. We identified 90 transcript-derived fragments (TDFs) that are differentially expressed, out of which 86 TDFs were classified on the basis of their either complete presence or absence (qualitative variants) and 4 on differential expression pattern levels (quantitative variants) in the two varieties. Finally, we identified 27 non-redundant differentially expressed cDNAs that are unique to salt tolerant variety which represent different groups of genes involved in metabolism, cellular transport, cell signaling, transcriptional regulation, mRNA splicing, seed development and storage, etc. The expression patterns of seven out of nine such genes showed a significant increase of differential expression in tolerant variety after 1 h of salt stress in comparison to salt-sensitive variety as analyzed by qRT-PCR. The direct and indirect relationship of identified TDFs with salinity tolerance mechanism is discussed.
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Affiliation(s)
- Ananthi Jayaraman
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, JNU Campus, New Delhi 110067, India
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Pai PNS, Rao GK, Srinivas B, Puranik S. RPLC Determination of Tinidazole and Diloxanide Furoate in Tablets. Indian J Pharm Sci 2008; 70:670-2. [PMID: 21394273 PMCID: PMC3038301 DOI: 10.4103/0250-474x.45415] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2006] [Revised: 03/24/2008] [Accepted: 10/15/2008] [Indexed: 11/07/2022] Open
Abstract
A simple reverse phase liquid chromatographic method has been developed and subsequently validated for simultaneous determination of tinidazole and diloxanide furoate. The separation was carried out using a mobile phase consisting of acetonitrile, methanol and 0.2 M potassium dihydrogen phosphate (pH 5) in the ratio 2:3:2.The column used was SS Wakosil-II C-18 with a flow rate of 1 ml/min and UV detection at 282 nm. The described method was linear over a concentration range of 10-70 μg/ml and 10-90 μg/ml for the assay of diloxanide furoate and tinidazole, respectively. The mean recovery was found to be 100-101% for tinidazole and 97-103% for diloxanide furoate when determined at three different levels.
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Affiliation(s)
- P N S Pai
- Department of Quality Assurance, Al-Ameen College of Pharmacy, Bangalore-560027, India
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Puranik S, Quiney N. Epileptiform movements associated with re-exposure to propofol. Eur J Anaesthesiol 2004; 21:72-4. [PMID: 14768927 DOI: 10.1017/s0265021504211127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Abstract
The UK National Health Service has now specified a maximum interval of two weeks between general practitioner (GP) referral and specialist assessment for patients with suspected cancer. We examined progress through the cancer pathway in 160 patients with potentially curable cancers of the prostate, bladder, kidney and testis before implementation of this rule. Median intervals with interquartile ranges were quantified from the first GP consultation to hospital referral, then to the first hospital consultation, confirmation of diagnosis and definitive surgery. 34% of patients were seen at the hospital within two weeks of referral. The overall median interval from GP consultation to radical surgery was 137 days, the longest being for prostate cancer (median 244). For prostate, bladder and renal cancers the principal element of delay was from the time of diagnosis to surgery (76, 73 and 26 days respectively). These results indicate that, under the two-weeks-wait rule, 2 out of every 3 patients achieve earlier initial assessment. However, the overall delay will not be substantially reduced without concomitant increases in diagnostic facilities, theatre time and human resources.
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Affiliation(s)
- K R Subramonian
- Department of Urology, Medway Maritime Hospital, Windmill Road, Gillingham ME7 5NY, UK
| | - S Puranik
- Department of Urology, Medway Maritime Hospital, Windmill Road, Gillingham ME7 5NY, UK
| | - G R Mufti
- Department of Urology, Medway Maritime Hospital, Windmill Road, Gillingham ME7 5NY, UK
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Carone D, Patton D, Bums W, Starrat C, Natale M, Simpson R, Bradshaw A, Widmayer S, Peterson L, Puranik S. Pediatric closed head injury: using symbol search as a substitute on the WISC-III. Arch Clin Neuropsychol 2000. [DOI: 10.1093/arclin/15.8.795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Carone D, Patton D, Burns W, Starrat C, Natale M, Simpson R, Bradshaw A, Widmayer S, Peterson L, Puranik S. Pediatric closed head injury: differential impact on verbal and visual--spatial memory, and intelligence. Arch Clin Neuropsychol 2000. [DOI: 10.1093/arclin/15.8.796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Simpson R, Burns W, Patton D, Widmayer S, Carone D, Natale M, Bradshaw A, Starvant C, Peterson L, Puranik S. How much does the WRAML Screening Index over-estimate general memory in clinical pediatric populations? Arch Clin Neuropsychol 2000. [DOI: 10.1093/arclin/15.8.803a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Patton D, Carone D, Burns W, Natale M, Simpson R, Bradshaw A, Widmayer S, Peterson L, Starratt C, Puranik S. Pediatric closed head injury affects the relationship between achievement and intelligence. Arch Clin Neuropsychol 2000. [DOI: 10.1093/arclin/15.8.793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Abstract
BACKGROUND Bicycle injury data from local communities are important for developing injury prevention and control programs. This study represents the efforts of one community trauma center to describe bicycle injuries. METHODS We conducted a retrospective analysis of bicycle injury data from hospital charts, emergency medical services reports, and medical examiner reports. The review encompassed a 4-year period. The study sample included 211 trauma alert patients, ages 1 through 15 years, who were treated for bicycle-related injuries at our level II pediatric trauma center. RESULTS Bicycle injuries accounted for 18% of all pediatric trauma alert patients. The mean age of injured children was 10 years, and 79% were males. Bicycle-motor vehicle collisions caused 84% of injuries. Only 3 children (1.4%) wore bicycle helmets. Resulting injuries included external wounds (86%), head injuries (47%), fractures (29%), and internal organs (9%). Six children died. CONCLUSIONS Bicycle injuries are a significant cause of mortality and morbidity for children in our community. Use of safety helmets by child bicyclists is inadequate. The data from this study can be used as a baseline in testing the effectiveness of local and state interventions, including new legislation mandating helmet use by children in our state.
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Affiliation(s)
- S Puranik
- Broward General Medical Center, Trauma Services, Fort Lauderdale, Fla 33316, USA
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Abstract
INTRODUCTION This study was conducted to survey parents of children seen in the emergency department regarding parent and child safety-related behaviors, parents' perceptions of their children's risks for injury, and educational needs. METHODS The descriptive design involved three questionnaires with age-specific items related to children in groups 0-4 years, 5-12 years, and 13-15 years. Parents voluntarily completed the questionnaires in the emergency department waiting area. Data were analyzed by descriptive statistics, parametric tests, and content analysis. RESULTS The culturally diverse sample included 81% minority group representation. Parents tended to underestimate their children's risks for injury from motor vehicle crashes. Less than one half of caretakers believed that most injuries can be prevented. Only one third of parents listed needs for future learning, although parents of younger children listed more needs. High response rates were received for knowing how to call 911, use of child car seats and seat belts, and smoke detectors in the home. DISCUSSION Survey results provide evidence that parents have misconceptions about childhood injury. Through strategic planning, we have expanded our community education programs to focus on cardiopulmonary resuscitation and activating the emergency medical system, water safety, use of safety helmets, and injury prevention in the home.
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Puranik S, Long J, Dove DB, Coffman S. Experiences in the first year. Community hospital pediatric trauma center. J Fla Med Assoc 1996; 83:23-6. [PMID: 8849976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Demographic and outcome variables of children seen in a community hospital Level II pediatric trauma center are described and patterns of injury classified according to different mechanisms. Records were reviewed retrospectively of 184 patients seen over a one year period, 63% were male and the peak age group was 13-15 years (31%). Descriptive and nonparametric statistics were used to analyze the data. Mechanisms of injury included pedestrian vs auto (27%), falls (23%), motor vehicle occupants (18%), bicycle vs auto (17%), sports injuries (3%), motorcycle crashes (2%), gunshot wounds (2%), and stabbings (2%). Penetrating injuries had higher average trauma scores but blunt injuries were associated with higher mortality. Demographics and mechanisms of injury were similar to national studies. Emphasis on the use of pediatric trauma scores by emergency medical personnel is suggested to decrease the over-triage rate. The frequency of bicycle injuries and lack of helmet use prompted a major helmet promotion campaign.
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MESH Headings
- Accidental Falls/statistics & numerical data
- Accidents, Traffic/statistics & numerical data
- Adolescent
- Age Factors
- Athletic Injuries/epidemiology
- Bicycling/injuries
- Bicycling/statistics & numerical data
- Child
- Child, Preschool
- Female
- Florida/epidemiology
- Head Protective Devices
- Health Promotion
- Hospitals, Community/statistics & numerical data
- Hospitals, Pediatric/statistics & numerical data
- Humans
- Infant
- Injury Severity Score
- Male
- Motorcycles/statistics & numerical data
- Outcome Assessment, Health Care
- Retrospective Studies
- Sex Factors
- Trauma Centers/statistics & numerical data
- Triage
- Wounds and Injuries/classification
- Wounds and Injuries/epidemiology
- Wounds, Gunshot/epidemiology
- Wounds, Nonpenetrating/epidemiology
- Wounds, Nonpenetrating/mortality
- Wounds, Stab/epidemiology
- Wounds, Stab/mortality
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Affiliation(s)
- S Puranik
- Trauma Services, Broward General Medical Center, Fort Lauderdale
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