Ongoing declines for the world's amphibians in the face of emerging threats

Systematic assessments of species extinction risk at regular intervals are necessary for informing conservation action1,2. Ongoing developments in taxonomy, threatening processes and research further underscore the need for reassessment3,4. Here we report the findings of the second Global Amphibian Assessment, evaluating 8,011 species for the International Union for Conservation of Nature Red List of Threatened Species. We find that amphibians are the most threatened vertebrate class (40.7% of species are globally threatened). The updated Red List Index shows that the status of amphibians is deteriorating globally, particularly for salamanders and in the Neotropics. Disease and habitat loss drove 91% of status deteriorations between 1980 and 2004. Ongoing and projected climate change effects are now of increasing concern, driving 39% of status deteriorations since 2004, followed by habitat loss (37%). Although signs of species recoveries incentivize immediate conservation action, scaled-up investment is urgently needed to reverse the current trends.

Ecophysiology of a lacertid community in the high Moroccan mountains suggests conservation guidelines

Lizard species may differ in their ecophysiology due to adaptation, plasticity and/or phylogeny. In restrictive environments, ecophysiological differences of species living in sympatry are expected to reveal long-term evolutionary responses to the abiotic environment while competitive interactions should be limited. These influences can be disentangled by combining field monitoring with experimental tests. Here, three lacertid lizard species, Atlantolacerta andreanskyi, Scelarcis perspicillata and Podarcis vaucheri sharing high mountain habitats in Oukaimeden (High Atlas, Morocco), were studied. In the field, spatiotemporal variation of the thermal and hydric environment used by the lizards was monitored using data-loggers. In the lab, thermal and hydric ecophysiology was estimated through assessments of preferred temperatures (Tp) and water loss (WL) rates. Species differed in microhabitat use and, hence, in their exposure to variations in temperature and humidity. However, they only differed in their WL (A. andreanskyi > S. perspicillata > P. vaucheri) while their Tp were similar. Such partial differences of species in in the fundamental niche, likely derived from their long-term independent phylogenetic trajectories, can be used to predict their responses to climate and habitat shifts in this and other parts of their respective ranges. Results also confirm previous suggestions that, together with thermal physiology, hydric physiology plays a prominent role in the organisation of lizard communities in the temperate region.

Isolation and characterization of two satellite DNAs in Atlantolacerta andreanskyi (Werner, 1929) (Reptilia, Lacertidae)

Two satellite DNAs (satDNAs) have been isolated and characterized from three populations of Atlantolacerta andreanskyi. One satDNA (AAN-TaqI) has been isolated here from the first time. It is characterized by a tendency to AT enrichment (AT = 54.2%) and monomer length ranging from 187 to 199 bp. FISH experiments showed that this element occurs in subterminal position on the short arms of all chromosomes of the complement. The analyses of genetic variability of AAN-TaqI showed that the concerted evolution is acting effectively on these repeats that form separate clusters consistent with the geographic origin in the phylogenetic tree, thus supporting the hypothesis that A. andreanskyi would be a species complex. In addition, in the population from Jbel Aoulime this satDNA is already differentiated into two subfamilies. The other satDNA belongs to the family of IMO-TaqI already isolated in other lacertids. Differently from AAN-TaqI, concerted evolution does not seem to act effectively on this element that is not differentiated between populations. These results confirm that IMO-TaqI (AT = 53.4%) is conserved in both chromosomal position and most of its sequence in the lacertids from which it has been characterized so far. Its remarkable evolutionary conservation for about 45 million years could indicate that this satDNA may have a functional role that future investigations could unveil. Once again, this study shows how satDNAs coexisting in the same genome may differ in their evolutionary pattern, even though the reasons underlying this phenomenon in the species here studied have still to be fully understood.

Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards

Climatic conditions changing over time and space shape the evolution of organisms at multiple levels, including temperate lizards in the family Lacertidae. Here we reconstruct a dated phylogenetic tree of 262 lacertid species based on a supermatrix relying on novel phylogenomic datasets and fossil calibrations. Diversification of lacertids was accompanied by an increasing disparity among occupied bioclimatic niches, especially in the last 10 Ma, during a period of progressive global cooling. Temperate species also underwent a genome-wide slowdown in molecular substitution rates compared to tropical and desert-adapted lacertids. Evaporative water loss and preferred temperature are correlated with bioclimatic parameters, indicating physiological adaptations to climate. Tropical, but also some populations of cool-adapted species experience maximum temperatures close to their preferred temperatures. We hypothesize these species-specific physiological preferences may constitute a handicap to prevail under rapid global warming, and contribute to explaining local lizard extinctions in cool and humid climates.

Morphological and physiological assessments reveal that freshwater turtle (Mauremys leprosa) can flourish under extremely degraded-polluted conditions

Freshwater turtles are long-lived sedentary organisms used as biological sentinels to assess anthropogenic perturbations in freshwater-ecosystems; notably because pollutants tend to accumulate in their tissues. Pollution has detrimental effects in sea turtles, but studies in freshwater turtles have provided contrasted results: several species have been impacted by habitat perturbation and pollution while others not. It is important to explore this issue since freshwater turtles are threatened worldwide. We compared two populations of the stripe necked terrapin (Mauremys leprosa) in a relatively pristine area (piedmont of the Atlas mountain) versus an extremely degraded-polluted area (sewers of a large city) in Morocco. All morphological and physiological proxies showed that turtles were able to cope remarkably well with highly degraded-polluted habitat. Population density, body size, and body condition were higher in the sewers, likely due to permanent water and food availability associated with human wastes. Stress markers (e.g. glucocorticoids) provided complex results likely reflecting the capacity of turtles to respond to various stressors. Reproductive parameters (testosterone level, indices of vitellogenesis) were lower in the relatively pristine area. The deceptive overall image provided by these analyses may hide the disastrous human impact on rivers. Indeed, Mauremys leprosa is the only aquatic vertebrate able to survive in the sewers, and thus, might nonetheless be a pertinent indicator of water quality, providing that the complexity of eco-physiological responses is considered.

Large-scale geographic patterns of mercury contamination in Morocco revealed by freshwater turtles

Mercury (Hg) is a toxic contaminant present in most aquatic ecosystems. High concentrations pose serious threats to organisms and to human health. Because previous studies focused on few countries, environmental hazard due to Hg contamination remains obscure in many geographic areas, and for example limited information is available in North Africa. We examined total Hg contamination in 13 sites in Morocco (12 rivers and one lake) spread over a large area, 400 km north-south and 350 km west-east, that encompasses different biogeographic zones separated by the Atlas Mountains. Due to their longevity and sedentary habits, we used freshwater turtles as biological probes to monitor Hg exposure. Keratinized tissues reflect long-term Hg exposure; thus, we assayed Hg concentration in the claws of > 200 individuals and supplemented these data with blood Hg concentrations of > 60 individuals (a tissue that provides shorter term Hg exposure integration). The results provide the first large-scale picture of Hg contamination in the aquatic freshwater systems of Morocco. Comparisons with previous studies revealed that some of the sites were highly contaminated (e.g. mean Hg concentrations were above 5 μg g^-1, a very high level in keratinized tissues) whereas other sites presented moderate or baseline levels. Unexpectedly, all highly contaminated sites were found in less densely populated areas, while more densely urbanized northern sites, even the sewers of large cities, were not highly contaminated. We hypothesize that silver mining activities in the southern High Atlas and in the Anti-Atlas contaminate rivers of the catchment basins over long distances. These findings indicate that fish, water consumption and contamination levels in local people should be further scrutinized.

Release calls of Moroccan spadefoot toad, Pelobates varaldii (Anura, Pelobatidae)

Release calls of Pelobates varaldii Pasteur and Bons (1959) are described quantitatively based on airborne recordings obtained from 4 males and 12 females from a population of the extreme north of its range. The calls are sequences of pulsed notes with a variable number of pulses per note. To the best of our knowledge this is the first report on the acoustic repertoire of this endemic endangered species from Morocco.

Cytogenetic Characterization of a Population of Acanthodactylus lineomaculatus Duméril and Bibron, 1839 (Reptilia, Lacertidae), from Southwestern Morocco and Insights into Sex Chromosome Evolution

Acanthodactylus lineomaculatus is now regarded as an ecotype of A. erythrurus with which it has been recently synonymized. Despite the wide range of A. erythrurus, karyological data for this species are scarce and limited to classical cytogenetic studies carried out in individuals from only 2 locations (central Spain and Spanish enclave of Melilla on the northwestern Mediterranean Moroccan coast). Here, for the first time, we cytogenetically characterized individuals of A. lineomaculatus from the southwestern Moroccan Atlantic coast with the aim to increase the karyological knowledge of this wide-ranging species and to assess if any chromosomal changes can be found in this ecotype in comparison to other populations of this species. The diploid number of the individuals investigated is 2n = 38 which is typical of most lacertids. Active NORs were located telomerically in a medium-small pair of chromosomes, and no inactive NORs were detected. C-banding revealed an intensely heterochromatic W chromosome composed of AT-rich (centromere and long arm telomeric region) and GC-rich (most of the long arm) regions, with extended interstitial telomeric sequences. These telomere-like repeats occupy the GC-rich heterochromatin of the W. The DNA composition of the W represents a trait distinguishing A. lineomaculatus (southwestern Morocco) from A. erythrurus from Spain that possess a DAPI-positive (AT-rich) W chromosome. In conclusion, these results add further evidence to the remarkable karyotype conservation in lacertid lizards, although differences in NOR location and in W chromosome structure among populations could suggest an incipient speciation mediated by chromosome changes in this wide-ranging lizard species.

The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets

The nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.

Blood mixtures: impact of puncture site on blood parameters

Various puncture routes, veins, arteries, heart, are used to take blood in animals. For anatomical reasons, differences in blood composition are expected among puncture sites. However, this issue has been rarely assessed and contrasted results have been reported: strong effects of puncture site versus a lack of effect. We captured free-ranging freshwater turtles from different locations to compare the mean concentrations of 12 blood parameters (metabolites, hormone, ions, and enzyme) among three puncture sites: (1) a lateral branch of the jugular vein, (2) a dorsal subcarapacial cervical plexus (sometimes incorrectly referred as the 'cervical sinus' in the literature), and (3) a caudal plexus site (sometimes incorrectly referred as the 'caudal sinus'). Because we used very small syringes (27-30G), we were able to separate lymph, blood, or blood-lymph mixtures. Our results show very strong effects of puncture site and of mixture level (mean maximal difference between sites was 250 %). We also found strong sex and geographical effects. Typically, there were differences in concentrations of blood solutes sampled from the lateral jugular vein and subcarapacial plexus, mainly due to sampling a mixture of blood and lymph from the 'blood' at the subcarapacial site and pure blood from the lateral jugular site, and likewise, samples from the caudal site were highly variable due to often sampling a mixture of blood and lymph. These results have technical and fundamental implications, especially when performing comparative analyses. Further, by selecting precise puncture sites, physiological differences between lymph and blood compartments could be investigated.

The Atlas Massif separates a northern and a southern mitochondrial haplotype group of North African water frogs Pelophylax saharicus (Anura: Ranidae) in Morocco

We assessed the genetic variation of 47 Moroccan populations of the North African water frog (Pelophylax saharicus) using partial sequences of the mitochondrial cytochrome oxidase subunit I gene (COI). All 239 samples belonged to the main haplotype clade previously identified from Morocco, with no haplotypes of the Algerian/Tunisian clades among our samples. Altogether 40 haplotypes were found, with a maximum of 13 mutational steps between them. Two weakly divergent haplogroups separated by a minimum of six mutational steps were distributed (i) in the Anti-Atlas and the Sahara (south of the High Atlas Mountains) versus (ii) in the Middle Atlas, the High Atlas, and in the Rif area north of the Atlas Massif. Haplotypes of the northern haplogroup were found at the southernmost locality, which might be due to human translocation, and co-occurrence of the two haplogroups was recorded at three sites within the range of the northern haplogroup.

New insights on phylogeography and distribution of painted frogs (Discoglossus) in northern Africa and the Iberian Peninsula

Painted frogs (Discoglossus) contain five to six species of Western Palearctic anurans that are mainly distributed in allopatry. We here provide the first comprehensive assessment of the phylogeography of the Moroccan species D. scovazzi and geographically characterize its contact zone with D. pictus in Eastern Morocco. Discoglossus scovazzi shows, in general, a weak phylogeographic structure across Morocco on the basis of mitochondrial DNA sequences of the cytochrome b gene, with only populations centered in the Atlas Mountains characterized by the presence of slightly divergent haplotypes. In eastern Morocco, all populations east of the Moulouya River were clearly assignable to D. pictus. This species was also found along the Mediterranean coast west of the Moulouya, in the cities of Nador and Melilla, suggesting that not the river itself but the wide arid valley extending along much of the river (except close to the estuary) acts as a possible distributional barrier to these frogs. No sympatry of D. scovazzi with D. pictus was observed, and all specimens were concordantly assigned to either species by DNA sequences of cytochrome b and of the nuclear marker RAG1. Species distribution models of the two taxa show largely overlapping areas of suitable habitat, and the two species’ niches are significantly more similar than would be expected given the underlying environmental differences between the regions in which they occur. Comparative data are also presented from the southern Iberian contact zone of D. galganoi galganoi and D. g. jeanneae. These taxa showed less clear-cut distributional borders, extensively shared RAG1 haplotypes, and had instances of sympatric occurrence on the basis of cytochrome b haplotypes, in agreement with the hypothesis of a yet incomplete speciation. In this wide contact zone area we found mitochondrial sequences containing double peaks in electropherograms, suggesting nuclear pseudogenes or (less likely) heteroplasmy, possibly related to the ongoing admixture among the lineages.

Patterns of throat colour variation in Quedenfeldtia trachyblepharus, a high-altitude gecko endemic to the High Atlas Mountains of Morocco

The persistence of marked phenotypic variation within species is evolutionarily puzzling. We uncovered remarkable variation in throat colouration in a high-altitude gecko (Atlas Day Gecko, Quedenfeldtia trachyblepharus) endemic to the High Atlas Mountains of Morocco. Orange, yellow, and white variants were found in approximately equal proportions in both sexes, and in juveniles and adults. The colour variants did not differ in body size or in body condition, but there was some indication that orange males have relatively longer jaws than white or yellow males. The number of mites harboured by an individual was not a function of its sex or of its throat colouration, but larger lizards did harbour more mites. Our data do not support the hypotheses that throat colour variation is due to selection pressures differing between the sexes or through ontogeny, or signals immunocompetence, but offer some support for the hypothesis that throat colour variation signals dominance. Future investigations on the evolution of throat colour variation in this species should use spectrophotometry to obtain finer colour classification and incorporate measures of fitness.

Distribution of Testudo graeca in the western Mediterranean according to climatic factors

Despite being one of the most charismatic elements of the Mediterranean Basin fauna and its threatened status, the western Mediterranean range of Testudo graeca is at present very poorly known. The present work provides the most detailed geographical and ecological description for the North African clade of T. graeca so far. We gathered 283 occurrence data of T. graeca in North Africa and modelled the distribution by means of presence-only distribution modelling tools. The obtained model was then projected to southern Europe in order to explore whether the environmental characteristics of European populations fall into the predicted niche of the species in North Africa.

T. graeca showed a wide environmental range in North Africa. Presence localities ranged from the sea level to 2090 m of altitude and from 116 to 1093 mm of annual precipitation. The presence-only model indicates that distribution in North Africa is mainly related to rainfall, specifically rainfall values in the wettest and coldest quarter of the year. The distribution model showed a range of ca. 1 000 000 km2. The projection of the model to southern Europe showed that the southern Iberian and Balkan Peninsulas, as well as most Mediterranean islands, present climatic conditions within those found in the range of the species in North Africa.

Is sexual body shape dimorphism consistent in aquatic and terrestrial chelonians?

Comparisons between aquatic and terrestrial species provide an opportunity to examine how sex-specific adaptations interact with the environment to influence body shape. In terrestrial female tortoises, selection for fecundity favors the development of a large internal abdominal cavity to accommodate the clutch; in conspecific males, sexual selection favors mobility with large openings in the shell. To examine to what extent such trends apply in aquatic chelonians we compared the body shape of males and females of two aquatic turtles (Chelodina colliei and Mauremys leprosa). In both species, females were larger than males. When controlled for body size, females exhibited a greater relative internal volume and a higher body condition index than males; both traits potentially correlate positively with fecundity. Males were more streamlined (hydrodynamic), and exhibited larger openings in the shell providing more space to move their longer limbs; such traits probably improve mobility and copulation ability (the males chase and grab the female for copulation). Overall, although the specific constraints imposed by terrestrial and aquatic locomotion shape the morphology of chelonians differently (aquatic turtles were flatter, hence more hydrodynamic than terrestrial tortoises), the direction for sexual shape dimorphism remained unaffected. Our main conclusion is that the direction of sexual shape dimorphism is probably more consistent than sexual size dimorphism in the animal kingdom.

Does testosterone influence activity budget in the male Greek tortoise (Testudo graeca graeca)?

The stimulatory effect of testosterone on male sexual activity is one of the clearest examples linking hormones and behaviors. However, this relationship is complex in Chelonians. We experimentally studied the influence of testosterone levels on the activity budget and space use in male Greek tortoises (Testudo graeca graeca) during the spring mating season. We first described the annual pattern of changes in plasma testosterone levels in free-ranging animals in Morocco. Two peaks, one in winter and one in summer, corresponded to periods of inactivity; whereas mating periods in spring and to a lesser extent in autumn were associated with low plasma testosterone levels. Second, we experimentally manipulated plasma testosterone levels in free-ranging males, and analyzed the behavioral consequences. The strong contrasts in plasma hormone levels induced by the experimental treatments did not result in changes in activity budget or space use, both in the short-term or more than one month after the beginning of the hormonal treatment. Our results suggest that testosterone levels did not influence directly behavioral activity in this species, either immediately or after a time delay of one month.