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Song H, Park W, Kim G, Choi MG, In JH, Rhee H, Kim KM. Memristive Explainable Artificial Intelligence Hardware. Adv Mater 2024:e2400977. [PMID: 38508776 DOI: 10.1002/adma.202400977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 03/11/2024] [Indexed: 03/22/2024]
Abstract
Artificial intelligence (AI) is often considered a black box because it provides optimal answers without clear insight into its decision-making process. To address this black box problem, explainable artificial intelligence (XAI) has emerged, which provides an explanation and interpretation of its decisions, thereby promoting the trustworthiness of AI systems. Here, a memristive XAI hardware framework is presented. This framework incorporates three distinct types of memristors (Mott memristor, valence change memristor, and charge trap memristor), each responsible for performing three essential functions (perturbation, analog multiplication, and integration) required for the XAI hardware implementation. Three memristor arrays with high robustness are fabricated and the image recognition of 3 × 3 testing patterns and their explanation map generation are experimentally demonstrated. Then, a software-based extended system based on the characteristics of this hardware is built, simulating a large-scale image recognition task. The proposed system can perform the XAI operations with only 4.32% of the energy compared to conventional digital systems, enlightening its strong potential for the XAI accelerator.
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Affiliation(s)
- Hanchan Song
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Woojoon Park
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Gwangmin Kim
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Moon Gu Choi
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Jae Hyun In
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Hakseung Rhee
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Kyung Min Kim
- Department of Materials Science and Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
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2
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Kim C, Govindarajan N, Hemenway S, Park J, Zoraster A, Kong CJ, Prabhakar RR, Varley JB, Jung HT, Hahn C, Ager JW. Importance of Site Diversity and Connectivity in Electrochemical CO Reduction on Cu. ACS Catal 2024; 14:3128-3138. [PMID: 38449526 PMCID: PMC10913037 DOI: 10.1021/acscatal.3c05904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 01/23/2024] [Accepted: 01/31/2024] [Indexed: 03/08/2024]
Abstract
Electrochemical CO2 reduction on Cu is a promising approach to produce value-added chemicals using renewable feedstocks, yet various Cu preparations have led to differences in activity and selectivity toward single and multicarbon products. Here, we find, surprisingly, that the effective catalytic activity toward ethylene improves when there is a larger fraction of less active sites acting as reservoirs of *CO on the surface of Cu nanoparticle electrocatalysts. In an adaptation of chemical transient kinetics to electrocatalysis, we measure the dynamic response of a gas diffusion electrode (GDE) cell when the feed gas is abruptly switched between Ar (inert) and CO. When switching from Ar to CO, CO reduction (COR) begins promptly, but when switching from CO to Ar, COR can be maintained for several seconds (delay time) despite the absence of the CO reactant in the gas phase. A three-site microkinetic model captures the observed dynamic behavior and shows that Cu catalysts exhibiting delay times have a less active *CO reservoir that exhibits fast diffusion to active sites. The observed delay times and the estimated *CO reservoir sizes are affected by catalyst preparation, applied potential, and microenvironment (electrolyte cation identity, electrolyte pH, and CO partial pressure). Notably, we estimate that the *CO reservoir surface coverage can be as high as 88 ± 7% on oxide-derived Cu (OD-Cu) at high overpotentials (-1.52 V vs SHE) and this increases in reservoir coverage coincide with increased turnover frequencies to ethylene. We also estimate that *CO can travel substantial distances (up to 10s of nm) prior to desorption or reaction. It appears that active C-C coupling sites by themselves do not control selectivity to C2+ products in electrochemical COR; the supply of CO to those sites is also a crucial factor. More generally, the overall activity of Cu electrocatalysts cannot be approximated from linear combinations of individual site activities. Future designs must consider the diversity of the catalyst network and account for intersite transportation pathways.
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Affiliation(s)
- Chansol Kim
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, South Korea
- Clean
Energy Research Center, Korea Institute
of Science and Technology (KIST), Seoul 02792, South Korea
| | - Nitish Govindarajan
- Materials
Science Division, Lawrence Livermore National
Laboratory, Livermore, California 94550, United States
| | - Sydney Hemenway
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Materials Science and Engineering, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Junho Park
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Materials Science and Engineering, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Anya Zoraster
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Chemical and Biochemical Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Calton J. Kong
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Materials Science and Engineering, University
of California, Berkeley, Berkeley, California 94720, United States
| | - Rajiv Ramanujam Prabhakar
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
| | - Joel B. Varley
- Materials
Science Division, Lawrence Livermore National
Laboratory, Livermore, California 94550, United States
| | - Hee-Tae Jung
- Department
of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, South Korea
| | - Christopher Hahn
- Materials
Science Division, Lawrence Livermore National
Laboratory, Livermore, California 94550, United States
| | - Joel W. Ager
- Chemical
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
- Department
of Materials Science and Engineering, University
of California, Berkeley, Berkeley, California 94720, United States
- Materials
Sciences Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
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Choi E, Jeon W. Near-perfect sound absorption using hybrid resonance between subwavelength Helmholtz resonators with non-uniformly partitioned cavities. Sci Rep 2024; 14:3174. [PMID: 38326525 PMCID: PMC10850328 DOI: 10.1038/s41598-024-53595-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 02/02/2024] [Indexed: 02/09/2024] Open
Abstract
We present near-perfect sound absorption using a metasurface composed of meta-atoms (MAs) which are subwavelength Helmholtz resonators (HRs) with cavities non-uniformly partitioned by membranes. By embedding the membranes at different horizontal locations in the cavities, we break geometrical symmetry between the MAs so as to derive hybrid resonance between the MAs at our target frequency. The resonance frequency of each MA is determined by delicately adjusting the locations of the membranes, resulting in perfect absorption at the target frequency which is different from the resonance frequencies of MAs. The metasurface is designed to satisfy impedance matching conditions with air at one or more target frequencies with the aid of a theoretical model for frequency-dependent effective acoustic impedance. The theoretical model is established with physical reality by considering the higher-order eigenmodes of the membrane, the visco-thermal losses in narrow orifices, and the end corrections of the subwavelength HR. The designed metasurface is fabricated and its absorption performance is verified experimentally in an impedance tube. Near-perfect absorption of sound is achieved at the target frequency of 500 Hz, which is 12.3% lower than that of near-perfect absorption by previous metasurfaces inducing hybrid resonance between HRs without membranes.
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Affiliation(s)
- Eunji Choi
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea
| | - Wonju Jeon
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
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Park SP, Lee HJ, Yu Y, Lee EYJ, Park YS. Designing the global vaccine supply chain: balancing intellectual property rights with post COVID-19 vaccine equity. BMJ Glob Health 2023; 8:e013669. [PMID: 38035734 PMCID: PMC10689365 DOI: 10.1136/bmjgh-2023-013669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 10/21/2023] [Indexed: 12/02/2023] Open
Abstract
This article aims to propose practical solutions that coordinate the conflicting interests between the global community and the pharmaceutical industry on the intellectual property (IP) waiver for COVID-19 vaccines and facilitate a more equitable vaccine supply chain in the post-COVID-19 world. We critically conducted a narrative literature review to identify procedural and practical issues in the current vaccine supply chain. The search was conducted across various academic disciplines, including biomedical science, life science, law and social science, using resources such as PubMed, Web of Science, Scopus and Westlaw. After screening 731 articles, 55 studies were selected for review. The narrative review revealed several critical barriers that hinder vaccine supply in less-developed countries (LDCs) as follows: (1) WTO Trade-Related Aspects of Intellectual Property Rights (TRIPs) waiver requests may not be granted due to its stringent consensus rule; (2) the current compulsory license system may not work due to the complexity of IP rights covering COVID-19 vaccine technologies; (3) only a few LDCs have domestic companies capable of manufacturing vaccines, and (4) political and economic tensions among countries exacerbate existing barriers to vaccine distribution in LDCs. Based on these findings, we proposed a comprehensive compulsory license system, which combines TRIPS's compulsory license system with the third-party beneficiary mechanism under Common Law. This integrated approach offers a balanced solution that ensures fair compensation for vaccine developers while facilitating broader vaccine access.
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Affiliation(s)
- Sung-Pil Park
- Korea Advanced Institute of Science and Technology, Daejeon, South Korea
| | - Hye Jin Lee
- Intellectual Property High Court, Daejeon, South Korea
| | - Yang Yu
- Shanghai University of International Business and Economics, Shanghai, China
| | | | - Young Soo Park
- Korea Advanced Institute of Science and Technology, Daejeon, South Korea
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Park S, Kim S, Lee JA, Ue M, Choi NS. Correction: Liquid electrolyte chemistries for solid electrolyte interphase construction on silicon and lithium-metal anodes. Chem Sci 2023; 14:10610. [PMID: 37799996 PMCID: PMC10548529 DOI: 10.1039/d3sc90171h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 09/05/2023] [Indexed: 10/07/2023] Open
Abstract
[This corrects the article DOI: 10.1039/D3SC03514J.].
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Affiliation(s)
- Sewon Park
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Saehun Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Jeong-A Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Makoto Ue
- Research Organization for Nano & Life Innovation, Waseda University 513 Waseda-tsurumaki-cho, Shinjuku-ku Tokyo 162-0041 Japan
| | - Nam-Soon Choi
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
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Park S, Kim S, Lee JA, Ue M, Choi NS. Liquid electrolyte chemistries for solid electrolyte interphase construction on silicon and lithium-metal anodes. Chem Sci 2023; 14:9996-10024. [PMID: 37772127 PMCID: PMC10530773 DOI: 10.1039/d3sc03514j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 09/14/2023] [Accepted: 08/11/2023] [Indexed: 09/30/2023] Open
Abstract
Next-generation battery development necessitates the coevolution of liquid electrolyte and electrode chemistries, as their erroneous combinations lead to battery failure. In this regard, priority should be given to the alleviation of the volumetric stress experienced by silicon and lithium-metal anodes during cycling and the mitigation of other problems hindering their commercialization. This review summarizes the advances in sacrificial compound-based volumetric stress-adaptable interfacial engineering, which has primarily driven the development of liquid electrolytes for high-performance lithium batteries. Besides, we discuss how the regulation of lithium-ion solvation structures helps expand the range of electrolyte formulations and thus enhance the quality of solid electrolyte interphases (SEIs), improve lithium-ion desolvation kinetics, and realize longer-lasting SEIs on high-capacity anodes. The presented insights are expected to inspire the design and synthesis of next-generation electrolyte materials and accelerate the development of advanced electrode materials for industrial battery applications.
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Affiliation(s)
- Sewon Park
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Saehun Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Jeong-A Lee
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
| | - Makoto Ue
- Research Organization for Nano & Life Innovation, Waseda University 513 Waseda-tsurumaki-cho Shinjuku-ku Tokyo 162-0041 Japan
| | - Nam-Soon Choi
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST) 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea
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7
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Baek S, Park Y, Paik SB. Species-specific wiring of cortical circuits for small-world networks in the primary visual cortex. PLoS Comput Biol 2023; 19:e1011343. [PMID: 37540638 PMCID: PMC10403141 DOI: 10.1371/journal.pcbi.1011343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 07/10/2023] [Indexed: 08/06/2023] Open
Abstract
Long-range horizontal connections (LRCs) are conspicuous anatomical structures in the primary visual cortex (V1) of mammals, yet their detailed functions in relation to visual processing are not fully understood. Here, we show that LRCs are key components to organize a "small-world network" optimized for each size of the visual cortex, enabling the cost-efficient integration of visual information. Using computational simulations of a biologically inspired model neural network, we found that sparse LRCs added to networks, combined with dense local connections, compose a small-world network and significantly enhance image classification performance. We confirmed that the performance of the network appeared to be strongly correlated with the small-world coefficient of the model network under various conditions. Our theoretical model demonstrates that the amount of LRCs to build a small-world network depends on each size of cortex and that LRCs are beneficial only when the size of the network exceeds a certain threshold. Our model simulation of various sizes of cortices validates this prediction and provides an explanation of the species-specific existence of LRCs in animal data. Our results provide insight into a biological strategy of the brain to balance functional performance and resource cost.
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Affiliation(s)
- Seungdae Baek
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Youngjin Park
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Se-Bum Paik
- Department of Brain and Cognitive Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
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Kim HJ, Rundfeldt HC, Lee I, Lee S. Tissue-growth-based synthetic tree generation and perfusion simulation. Biomech Model Mechanobiol 2023; 22:1095-1112. [PMID: 36869925 PMCID: PMC10167159 DOI: 10.1007/s10237-023-01703-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 02/10/2023] [Indexed: 03/05/2023]
Abstract
Biological tissues receive oxygen and nutrients from blood vessels by developing an indispensable supply and demand relationship with the blood vessels. We implemented a synthetic tree generation algorithm by considering the interactions between the tissues and blood vessels. We first segment major arteries using medical image data and synthetic trees are generated originating from these segmented arteries. They grow into extensive networks of small vessels to fill the supplied tissues and satisfy the metabolic demand of them. Further, the algorithm is optimized to be executed in parallel without affecting the generated tree volumes. The generated vascular trees are used to simulate blood perfusion in the tissues by performing multiscale blood flow simulations. One-dimensional blood flow equations were used to solve for blood flow and pressure in the generated vascular trees and Darcy flow equations were solved for blood perfusion in the tissues using a porous model assumption. Both equations are coupled at terminal segments explicitly. The proposed methods were applied to idealized models with different tree resolutions and metabolic demands for validation. The methods demonstrated that realistic synthetic trees were generated with significantly less computational expense compared to that of a constrained constructive optimization method. The methods were then applied to cerebrovascular arteries supplying a human brain and coronary arteries supplying the left and right ventricles to demonstrate the capabilities of the proposed methods. The proposed methods can be utilized to quantify tissue perfusion and predict areas prone to ischemia in patient-specific geometries.
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Affiliation(s)
- Hyun Jin Kim
- Mechanical Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
| | - Hans Christian Rundfeldt
- Mechanical Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
- Mechanical Engineering, Kalsruhe Institute of Technology, Kaiserstraße 12, Karlsruhe, 76131, Germany
| | - Inpyo Lee
- Mechanical Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Seungmin Lee
- Mechanical Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
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Oh H, Shin SJ, Choi E, Yamagishi H, Ohta T, Yabuuchi N, Jung HG, Kim H, Byon HR. Anion-Induced Interfacial Liquid Layers on LiCoO 2 in Salt-in-Water Lithium-Ion Batteries. JACS Au 2023; 3:1392-1402. [PMID: 37234123 PMCID: PMC10206596 DOI: 10.1021/jacsau.3c00061] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 04/17/2023] [Accepted: 04/18/2023] [Indexed: 05/27/2023]
Abstract
The incompatibility of lithium intercalation electrodes with water has impeded the development of aqueous Li-ion batteries. The key challenge is protons which are generated by water dissociation and deform the electrode structures through intercalation. Distinct from previous approaches utilizing large amounts of electrolyte salts or artificial solid-protective films, we developed liquid-phase protective layers on LiCoO2 (LCO) using a moderate concentration of 0.5∼3 mol kg-1 lithium sulfate. Sulfate ion strengthened the hydrogen-bond network and easily formed ion pairs with Li+, showing strong kosmotropic and hard base characteristics. Our quantum mechanics/molecular mechanics (QM/MM) simulations revealed that sulfate ion paired with Li+ helped stabilize the LCO surface and reduced the density of free water in the interface region below the point of zero charge (PZC) potential. In addition, in situ electrochemical surface-enhanced infrared absorption spectroscopy (SEIRAS) proved the appearance of inner-sphere sulfate complexes above the PZC potential, serving as the protective layers of LCO. The role of anions in stabilizing LCO was correlated with kosmotropic strength (sulfate > nitrate > perchlorate > bistriflimide (TFSI-)) and explained better galvanostatic cyclability in LCO cells.
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Affiliation(s)
- Hyunjeong Oh
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
- Advanced
Battery Center, KAIST Institute for NanoCentury, Daejeon 34141, Republic of Korea
| | - Seung-Jae Shin
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Eunjin Choi
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
- Advanced
Battery Center, KAIST Institute for NanoCentury, Daejeon 34141, Republic of Korea
| | - Hirona Yamagishi
- Sychrotron
Radiation (SR) Center, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
| | - Toshiaki Ohta
- Sychrotron
Radiation (SR) Center, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
| | - Naoaki Yabuuchi
- Department
of Chemistry and Life Science, Yokohama
National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama, Kanagawa 240-8501, Japan
| | - Hun-Gi Jung
- Energy
Storage Research Center, Clean Energy Research Division, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea
| | - Hyungjun Kim
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Hye Ryung Byon
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
- Advanced
Battery Center, KAIST Institute for NanoCentury, Daejeon 34141, Republic of Korea
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Aldonza MBD, Cha J, Yong I, Ku J, Sinitcyn P, Lee D, Cho RE, Delos Reyes RD, Kim D, Kim S, Kang M, Ku Y, Park G, Sung HJ, Ryu HS, Cho S, Kim TM, Kim P, Cho JY, Kim Y. Multi-targeted therapy resistance via drug-induced secretome fucosylation. eLife 2023; 12:75191. [PMID: 36961502 PMCID: PMC10089660 DOI: 10.7554/elife.75191] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 03/22/2023] [Indexed: 03/25/2023] Open
Abstract
Cancer secretome is a reservoir for aberrant glycosylation. How therapies alter this post- translational cancer hallmark and the consequences thereof remain elusive. Here we show that an elevated secretome fucosylation is a pan-cancer signature of both response and resistance to multiple targeted therapies. Large-scale pharmacogenomics revealed that fucosylation genes display widespread association with resistance to these therapies. In cancer cell cultures, xenograft mouse models, and patients, targeted kinase inhibitors distinctively induced core fucosylation of secreted proteins less than 60 kDa. Label-free proteomics of N-glycoproteomes identified fucosylation of the antioxidant PON1 as a critical component of the therapy-induced secretome (TIS). N-glycosylation of TIS and target core fucosylation of PON1 are mediated by the fucose salvage-FUT8-SLC35C1 axis with PON3 directly modulating GDP-Fuc transfer on PON1 scaffolds. Core fucosylation in the Golgi impacts PON1 stability and folding prior to secretion, promoting a more degradation-resistant PON1. Global and PON1-specific secretome de-N-glycosylation both limited the expansion of resistant clones in a tumor regression model. We defined the resistance-associated transcription factors (TFs) and genes modulated by the N-glycosylated TIS via a focused and transcriptome-wide analyses. These genes characterize the oxidative stress, inflammatory niche, and unfolded protein response as important factors for this modulation. Our findings demonstrate that core fucosylation is a common modification indirectly induced by targeted therapies that paradoxically promotes resistance.
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Affiliation(s)
| | - Junghwa Cha
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Insung Yong
- Computational Systems Biochemistry Research Group, Max Planck Institute of Biochemistry, Martinsried, Germany
| | - Jayoung Ku
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Pavel Sinitcyn
- Computational Systems Biochemistry Research Group, Max Planck Institute of Biochemistry, Martinsried, Germany
| | - Dabin Lee
- Comparative Medicine Disease Research Center, Seoul National University, Seoul, Republic of Korea
| | - Ryeong-Eun Cho
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Roben D Delos Reyes
- Department of Electrical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Dongwook Kim
- Department of Biochemistry, Seoul National University, Seoul, Republic of Korea
| | - Soyeon Kim
- Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea
| | - Minjeong Kang
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Yongsuk Ku
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Geonho Park
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Hye-Jin Sung
- Department of Biochemistry, Seoul National University, Seoul, Republic of Korea
| | - Han Suk Ryu
- Department of Pathology, Seoul National University Hospital, Seoul, Republic of Korea
| | - Sukki Cho
- Department of Thoracic and Cardiovascular Surgery, Seoul National University Bundang Hospital, Seongnam, Republic of Korea
| | - Tae Min Kim
- Department of Internal Medicine, Seoul National University Hospital, Seoul, Republic of Korea
| | - Pilnam Kim
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Je-Yoel Cho
- Department of Biochemistry, Seoul National University, Seoul, Republic of Korea
| | - Yoosik Kim
- Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
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11
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Song DH, Song CW, Chung J, Jang EH, Kim H, Hur Y, Hur EM, Kim D, Chang JB. In situ silver nanoparticle development for molecular-specific biological imaging via highly accessible microscopies. Nanoscale Adv 2023; 5:1636-1650. [PMID: 36926569 PMCID: PMC10012848 DOI: 10.1039/d2na00449f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 12/19/2022] [Indexed: 06/18/2023]
Abstract
In biological studies and diagnoses, brightfield (BF), fluorescence, and electron microscopy (EM) are used to image biomolecules inside cells. When compared, their relative advantages and disadvantages are obvious. BF microscopy is the most accessible of the three, but its resolution is limited to a few microns. EM provides a nanoscale resolution, but sample preparation is time-consuming. In this study, we present a new imaging technique, which we termed decoration microscopy (DecoM), and quantitative investigations to address the aforementioned issues in EM and BF microscopy. For molecular-specific EM imaging, DecoM labels proteins inside cells using antibodies bearing 1.4 nm gold nanoparticles (AuNPs) and grows silver layers on the AuNPs' surfaces. The cells are then dried without buffer exchange and imaged using scanning electron microscopy (SEM). Structures labeled with silver-grown AuNPs are clearly visible on SEM, even they are covered with lipid membranes. Using stochastic optical reconstruction microscopy, we show that the drying process causes negligible distortion of structures and that less structural deformation could be achieved through simple buffer exchange to hexamethyldisilazane. Using DecoM, we visualize the nanoscale alterations in microtubules by microtubule-severing proteins that cannot be observed with diffraction-limited fluorescence microscopy. We then combine DecoM with expansion microscopy to enable sub-micron resolution BF microscopy imaging. We first show that silver-grown AuNPs strongly absorb white light, and the structures labeled with them are clearly visible on BF microscopy. We then show that the application of AuNPs and silver development must follow expansion to visualize the labeled proteins clearly with sub-micron resolution.
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Affiliation(s)
- Dae-Hyeon Song
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology Daejeon Korea
| | - Chang Woo Song
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology Daejeon Korea
| | | | - Eun-Hae Jang
- Laboratory of Neuroscience, Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University Seoul Korea
| | - Hyunwoo Kim
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology Daejeon Korea
| | - Yongsuk Hur
- BioMedical Research Center, Korea Advanced Institute of Science and Technology Daejeon Korea
| | - Eun-Mi Hur
- Laboratory of Neuroscience, Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University Seoul Korea
- BK21 Four Future Veterinary Medicine Leading Education & Research Center, Seoul National University Seoul Korea
| | - Doory Kim
- Department of Chemistry, Hanyang University Seoul Korea
| | - Jae-Byum Chang
- Department of Materials Science and Engineering, Korea Advanced Institute of Science and Technology Daejeon Korea
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12
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Song E, Hwang S, Munasingha PR, Seo YS, Kang J, Kang C, Hohng S. Transcriptional pause extension benefits the stand-by rather than catch-up Rho-dependent termination. Nucleic Acids Res 2023; 51:2778-2789. [PMID: 36762473 PMCID: PMC10085680 DOI: 10.1093/nar/gkad051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 12/30/2022] [Accepted: 01/19/2023] [Indexed: 02/11/2023] Open
Abstract
Transcriptional pause is essential for all types of termination. In this single-molecule study on bacterial Rho factor-dependent terminators, we confirm that the three Rho-dependent termination routes operate compatibly together in a single terminator, and discover that their termination efficiencies depend on the terminational pauses in unexpected ways. Evidently, the most abundant route is that Rho binds nascent RNA first and catches up with paused RNA polymerase (RNAP) and this catch-up Rho mediates simultaneous releases of transcript RNA and template DNA from RNAP. The fastest route is that the catch-up Rho effects RNA-only release and leads to 1D recycling of RNAP on DNA. The slowest route is that the RNAP-prebound stand-by Rho facilitates only the simultaneous rather than sequential releases. Among the three routes, only the stand-by Rho's termination efficiency positively correlates with pause duration, contrary to a long-standing speculation, invariably in the absence or presence of NusA/NusG factors, competitor RNAs or a crowding agent. Accordingly, the essential terminational pause does not need to be long for the catch-up Rho's terminations, and long pauses benefit only the stand-by Rho's terminations. Furthermore, the Rho-dependent termination of mgtA and ribB riboswitches is controlled mainly by modulation of the stand-by rather than catch-up termination.
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Affiliation(s)
- Eunho Song
- Department of Physics and Astronomy, and Institute of Applied Physics, Seoul National University, Seoul 08826, Republic of Korea
| | - Seungha Hwang
- Department of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Palinda Ruvan Munasingha
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Yeon-Soo Seo
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Jin Young Kang
- Correspondence may also be addressed to Jin Young Kang. Tel: +82 42 350 2831;
| | - Changwon Kang
- Correspondence may also be addressed to Changwon Kang. Tel: +82 42 350 2610;
| | - Sungchul Hohng
- To whom correspondence should be addressed. Tel: +82 2 880 6593;
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13
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Kim BH, Kuk SH, Kim SK, Kim JP, Geum DM, Baek SH, Kim SH. Oxygen scavenging of HfZrO 2-based capacitors for improving ferroelectric properties. Nanoscale Adv 2022; 4:4114-4121. [PMID: 36285215 PMCID: PMC9514567 DOI: 10.1039/d2na00533f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 08/13/2022] [Indexed: 06/16/2023]
Abstract
HfO2-based ferroelectric (FE) materials have emerged as a promising material for non-volatile memory applications because of remanent polarization, scalability of thickness below 10 nm, and compatibility with complementary metal-oxide-semiconductor technology. However, in the metal/FE/insulator/semiconductor, it is difficult to improve switching voltage (V sw), endurance, and retention properties due to the interfacial layer (IL), which inevitably grows during the fabrication. Here, we proposed and demonstrated oxygen scavenging to reduce the IL thickness in an HfZrO x -based capacitor and the thinner IL was confirmed by cross-sectional transmission electron microscopy. V sw of a capacitor with scavenging decreased by 18% and the same P r could be obtained at a lower voltage than a capacitor without scavenging. In addition, excellent endurance properties up to 106 cycles were achieved. We believe oxygen scavenging has great potential for future HfZrO x -based memory device applications.
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Affiliation(s)
- Bong Ho Kim
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
| | - Song-Hyeon Kuk
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
| | - Seong Kwang Kim
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
| | - Joon Pyo Kim
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
| | - Dae-Myeong Geum
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
| | - Seung-Hyub Baek
- Electronic Materials Research Center, Korea Institute of Science and Technology (KIST) 02792 Seoul Republic of Korea
| | - Sang Hyeon Kim
- School of Electrical Engineering, Korea Advanced Institute of Science and Technology (KAIST) 34141 Daejeon Republic of Korea
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14
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Park G, Choi Y, Shin S, Lee Y, Hong S. Nanoscale Visualization of the Electron Conduction Channel in the SiO/Graphite Composite Anode. ACS Appl Mater Interfaces 2022; 14:30639-30648. [PMID: 35731963 PMCID: PMC9285628 DOI: 10.1021/acsami.2c01460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Conductive atomic force microscopy (C-AFM) is widely used to determine the electronic conductivity of a sample surface with nanoscale spatial resolution. However, the origin of possible artifacts has not been widely researched, hindering the accurate and reliable interpretation of C-AFM imaging results. Herein, artifact-free C-AFM is used to observe the electron conduction channels in Si-based composite anodes. The origin of a typical C-AFM artifact induced by surface morphology is investigated using a relevant statistical method that enables visualization of the contribution of artifacts in each C-AFM image. The artifact is suppressed by polishing the sample surface using a cooling cross-section polisher, which is confirmed by Pearson correlation analysis. The artifact-free C-AFM image was used to compare the current signals (before and after cycling) from two different composite anodes comprising single-walled carbon nanotubes (SWCNTs) and carbon black as conductive additives. The relationship between the electrical degradation and morphological evolution of the active materials depending on the conductive additive is discussed to explain the improved electrical and electrochemical properties of the electrode containing SWCNTs.
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Affiliation(s)
- Gun Park
- Department
of Materials Science and Engineering, Korea
Advanced Institute of Science and Technology, 291, Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Youngwoo Choi
- Department
of Materials Science and Engineering, Korea
Advanced Institute of Science and Technology, 291, Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Sunyoung Shin
- LG
Energy Solution, 188, Moonji-ro, Yuseong-gu, Daejeon 34122, Republic of Korea
| | - Yongju Lee
- LG
Energy Solution, 188, Moonji-ro, Yuseong-gu, Daejeon 34122, Republic of Korea
| | - Seungbum Hong
- Department
of Materials Science and Engineering, Korea
Advanced Institute of Science and Technology, 291, Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea
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15
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Kim H, Lee G, Song J, Kim SG. Real-Time Visualization of Scent Accumulation Reveals the Frequency of Floral Scent Emissions. Front Plant Sci 2022; 13:835305. [PMID: 35548271 PMCID: PMC9083826 DOI: 10.3389/fpls.2022.835305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 02/24/2022] [Indexed: 06/15/2023]
Abstract
Flowers emit a bouquet of volatiles to attract pollinators or to protect flowers from pathogen and herbivore attacks. Most floral volatiles are synthesized in the cytoplasm of petals and released into the headspace at a specific time of day. Various floral scent sampling methods coupled with gas chromatography-mass spectrometry have been used to measure the quality and quantity of floral volatiles. However, little is known about the emission patterns of floral scents. In most cases, it is still unclear whether floral scents emit continuously or discontinuously. Here we measured the frequency with which lily flowers emit scents using optical interferometry. By analyzing the refractive index difference between volatile organic compounds and ambient air, we were able to visualize the accumulation of the volatile vapors. The frequency of volatile emission was calculated from the unique footprint of temporal power spectrum maps. Based on these real-time measurements, we found that lily flowers emit the volatile compounds discontinuously, with pulses observed around every 10-50 min.
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Affiliation(s)
- Hyoungsoo Kim
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
| | - Gilgu Lee
- Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
| | - Junyong Song
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
| | - Sang-Gyu Kim
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea
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16
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Yu S, Hwang YH, Lee KT, Kim SO, Hwang JY, Hong SH. Outstanding Strengthening and Toughening Behavior of 3D-Printed Fiber-Reinforced Composites Designed by Biomimetic Interfacial Heterogeneity. Adv Sci (Weinh) 2022; 9:e2103561. [PMID: 34821483 PMCID: PMC8787430 DOI: 10.1002/advs.202103561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 10/28/2021] [Indexed: 06/13/2023]
Abstract
3D printing of fiber-reinforced composites is expected to be the forefront technology for the next-generation high-strength, high-toughness, and lightweight structural materials. The intrinsic architecture of 3D-printed composites closely represents biomimetic micro/macrofibril-like hierarchical structure composed of intermediate filament assembly among the micron-sized reinforcing fibers, and thus contributes to a novel mechanism to simultaneously improve mechanical properties and structural features. Notably, it is found that an interfacial heterogeneity between numerous inner interfaces in the hierarchical structure enables an exceptional increase in the toughness of composites. The strong interfacial adhesion between the fibers and matrix, with accompanying the inherently weak interfacial adhesion between intermediate filaments and the resultant interfacial voids, provide a close representation of the toughness behavior of natural architectures relying on the localized heterogeneity. Given the critical embedment length of fiber reinforcement, extraordinary improvement has been attained not only in the strength but also in toughness taking advantage of the synergy effect from the aforementioned nature-inspired features. Indeed, the addition of a small amount of short fiber to the brittle bio-filaments results in a noticeable increase of more than 200% in the tensile strength and modulus with further elongation increment. This article highlights the inherent structural hierarchy of 3D-printed composites and the relevant sophisticated mechanism for anomalous mechanical reinforcement.
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Affiliation(s)
- Siwon Yu
- Department of Material Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST)291 Daehak‐ro, Yuseong‐guDaejeon34141Republic of Korea
- Institute of Advanced Composite MaterialsKorea Institute of Science and Technology (KIST)Jeonbuk55324Republic of Korea
| | - Yun Hyeong Hwang
- Institute of Advanced Composite MaterialsKorea Institute of Science and Technology (KIST)Jeonbuk55324Republic of Korea
| | - Kang Taek Lee
- Department of Mechanical EngineeringKorea Advanced Institute of Science and Technology (KAIST)291 Daehak‐ro, Yuseong‐guDaejeon34141Republic of Korea
| | - Sang Ouk Kim
- National Creative Research Initiative Center for Multi‐dimensional Nanoscale AssemblyKorea Advanced Institute of Science and Technology (KAIST)291 Daehak‐ro, Yuseong‐guDaejeon34141Republic of Korea
| | - Jun Yeon Hwang
- Institute of Advanced Composite MaterialsKorea Institute of Science and Technology (KIST)Jeonbuk55324Republic of Korea
| | - Soon Hyung Hong
- Department of Material Science and EngineeringKorea Advanced Institute of Science and Technology (KAIST)291 Daehak‐ro, Yuseong‐guDaejeon34141Republic of Korea
- Nanotechnology Research InstituteJiaxing UniversityJiaxingChina
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17
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Son J, Jung Y. Lipid coated protein condensates as stable protocells with selective uptake abilities for biomolecules. Chem Sci 2022; 13:11841-11848. [PMID: 36320904 PMCID: PMC9580490 DOI: 10.1039/d2sc03123j] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 09/26/2022] [Indexed: 11/21/2022] Open
Abstract
To create cell-like synthetic systems, spatial confinement that is stable against environmental changes and selective uptake of diverse biomolecules into these compartments are key initial conditions. However, fabrication of protocells with these two features has been extremely difficult. Here, we used fully protein-based liquid condensates and a lipid coating on these condensates to construct highly stable protocells with an uptake ability for outside biomolecules. Condensates with an extremely high density of 6His-tagged proteins were coated with Ni(ii)-NTA(nitrilotriacetic acid)-modified lipids. High condensate rigidity and specific 6His-Ni-NTA interactions enabled the formation of lipid–protein protocells, which are stable even after centrifugations. In addition, immobile lipid coatings on condensates were permeable to outside biomolecules. When binding modules were fused into condensate-forming proteins, the resulting functionalized condensate-protocells could strongly and selectively uptake various outside proteins through specific protein interactions. Lipid-coated protein condensates, which are formed via specific protein–lipid interactions, were stable against centrifugation but selectively permeable to external biomolecules.![]()
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Affiliation(s)
- Juyoung Son
- Department of Chemistry, KAIST 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea +82-42-350-2810 +82-42-350-2817
| | - Yongwon Jung
- Department of Chemistry, KAIST 291 Daehak-ro, Yuseong-gu Daejeon 34141 Republic of Korea +82-42-350-2810 +82-42-350-2817
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18
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Abstract
The novel coronavirus, SARS-CoV-2, which causes COVID-19, has resulted in a pandemic with millions of deaths. To eradicate SARS-CoV-2 and prevent further infections, many vaccine candidates have been developed. These vaccines include not only traditional subunit vaccines and attenuated or inactivated viral vaccines but also nucleic acid and viral vector vaccines. In contrast to the diversity in the platform technology, the delivery of vaccines is limited to intramuscular vaccination. Although intramuscular vaccination is safe and effective, mucosal vaccination could improve the local immune responses that block the spread of pathogens. However, a lack of understanding of mucosal immunity combined with the urgent need for a COVID-19 vaccine has resulted in only intramuscular vaccinations. In this review, we summarize the history of vaccines, current progress in COVID-19 vaccine technology, and the status of intranasal COVID-19 vaccines. Future research should determine the most effective route for vaccine delivery based on the platform and determine the mechanisms that underlie the efficacy of different delivery routes.
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Affiliation(s)
| | - Heung Kyu Lee
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea;
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19
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Kim DW, Chang C, Chen X, Doran AC, Gaudreault F, Wager T, DeMarco GJ, Kim JK. Systems approach reveals photosensitivity and PER2 level as determinants of clock-modulator efficacy. Mol Syst Biol 2019; 15:e8838. [PMID: 31353796 PMCID: PMC6613017 DOI: 10.15252/msb.20198838] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 05/30/2019] [Accepted: 06/03/2019] [Indexed: 11/30/2022] Open
Abstract
In mammals, the master circadian clock synchronizes daily rhythms of physiology and behavior with the day-night cycle. Failure of synchrony, which increases the risk for numerous chronic diseases, can be treated by phase adjustment of the circadian clock pharmacologically, for example, with melatonin, or a CK1δ/ε inhibitor. Here, using in silico experiments with a systems pharmacology model describing molecular interactions, and pharmacokinetic and behavioral experiments in cynomolgus monkeys, we find that the circadian phase delay caused by CK1δ/ε inhibition is more strongly attenuated by light in diurnal monkeys and humans than in nocturnal mice, which are common preclinical models. Furthermore, the effect of CK1δ/ε inhibition strongly depends on endogenous PER2 protein levels, which differs depending on both the molecular cause of the circadian disruption and the patient's lighting environment. To circumvent such large interindividual variations, we developed an adaptive chronotherapeutics to identify precise dosing regimens that could restore normal circadian phase under different conditions. Our results reveal the importance of photosensitivity in the clinical efficacy of clock-modulating drugs, and enable precision medicine for circadian disruption.
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Affiliation(s)
- Dae Wook Kim
- Department of Mathematical SciencesKorea Advanced Institute of Science and TechnologyDaejeonKorea
| | - Cheng Chang
- Clinical PharmacologyPfizer Global Product DevelopmentPfizer Inc.GrotonCTUSA
| | - Xian Chen
- Comparative Medicine, Worldwide Research & DevelopmentPfizer Inc.CambridgeMAUSA
| | - Angela C Doran
- Enzymology and Transporter Group, Pharmacokinetics, Dynamics and Metabolism, Worldwide Research & DevelopmentPfizer Inc.GrotonCTUSA
| | - Francois Gaudreault
- Clinical Pharmacology and Pharmacometrics, Research & DevelopmentBiogen Inc.CambridgeMAUSA
| | - Travis Wager
- Neuroscience Research UnitWorldwide Research & DevelopmentPfizer Inc.BostonMAUSA
| | - George J DeMarco
- Department of Animal MedicineUniversity of Massachusetts Medical SchoolWorcesterMAUSA
| | - Jae Kyoung Kim
- Department of Mathematical SciencesKorea Advanced Institute of Science and TechnologyDaejeonKorea
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