Biochar improves the humification process during pig manure composting: Insights into roles of the bacterial community and metabolic functions

Biochar could promote humification in composting, nevertheless, its mechanism has not been fully explored from the perspective of the overall bacterial community and its metabolism. This study investigated the effects of bamboo charcoal (BC) and wheat straw biochar (WSB) on the humic acid (HA) and fulvic acid (FA) contents during pig manure composting. The results showed that BC enhanced humification more than WSB, and significantly increased the HA content and HA/FA ratio. The bacterial community structure under BC differed from those under the other treatments, and BC increased the abundance of bacteria associated with the transformation of organic matter compared with the other treatments. Furthermore, biochar enhanced the metabolism of carbohydrates and amino acids in the thermophilic and cooling phases, especially BC. Through Mantel tests and network analysis, we found that HA was mainly related to carbon source metabolism and the bacterial community, and BC might change the interaction patterns among carbohydrates, amino acid metabolism, Bacillales, Clostridiales, and Lactobacillales with HA and FA to improve the humification process during composting. These results are important for understanding the mechanisms associated with the effects of biochar on humification during composting.

Valorization of slow pyrolysis vapor from biomass waste: Comparative study on pyrolysis characteristics, evolved gas evaluation, and adsorption effects

Pyrolysis vapor is an important byproduct in the production of biochar from biomass waste, and its emission may pose potential environmental risks. To achieve green production of biochar and efficient utilization of pyrolysis vapors, a novel strategy is proposed in this study to use pristine biochar as an adsorbent to adsorb the pyrolysis vapors. According to thermogravimetry-Fourier infrared spectroscopy-mass spectrometry evaluation, the evolved vapors mainly consisted of oxygenated compounds, hydrocarbons, CO2, CO, and H2O. With pyrolysis temperature increasing, ethers, phenols, hydrocarbons, acids/ketones, and CO2 were changed in the same direction based on two-dimensional correlation spectroscopy analysis. Moreover, butene, propargyl alcohol, and butane were the most abundant ionic fragments. After adsorbing pyrolysis vapors, the heating value of the biochar increased by a maximum of 3.2 MJ kg-1 with changes of physicochemical properties. This strategy provides a theoretical basis for green preparation of biochar while recovering energy from pyrolysis vapors.

Environmental pollution mitigation through utilization of carbon dioxide by microalgae

Anthropogenic emissions of CO₂ have reached a critical level and the global surface temperature is expected to rise by 1.5 °C between 2030 and 2050. To ameliorate the current global warming scenario, the research community has been struggling to find more economical and innovative solutions for carbon sequestration. Among such techniques, the use of microalgal species such as Chlorella sp., Dunaliella tertiolecta, Spirulina platensis, Desmodesmus sp., and Nannochloropsis sp., among others have shown high carbon tolerance capacity (10-100%) for establishing carbon capture, utilization and storage systems. To make microalgal-based carbon capture more economical, the microalgal biomass (∼2 g/L) can be converted biofuels, pharmaceuticals and nutraceuticals through biorefinery approach with product yield in the range of 60-99.5%. Further, CRISPR-Cas9 has enabled the knockout of specific genes in microalgal species that can be used to generate low pH tolerant strains with high lipid production. Inspite of the emerging developments in pollution control by microalgae, only limited investigations are available on its economic aspects which indicate a production cost of ∼$ 0.5-15/kg microalgal biomass. This review intends to summarize the advancements in different carbon sequestration techniques while highlighting their mechanisms and major research areas that need attention for economical microalgae-based carbon sequestration.

Effects of erythromycin and roxithromycin on river periphyton: Structure, functions and metabolic pathways

Macrolides have been frequently detected in the surface waters worldwide, posing a threat to the aquatic microbes. Several studies have evaluated the ecotoxicological effects of macrolides on single algal and bacterial strains. However, without considering the species interaction in the aquatic microbial community, these results cannot be extrapolated to the field. Thus, the present study aimed to evaluate the effects of two macrolides (erythromycin and roxithromycin) on the structure, photosynthetic process, carbon utilization capacity, and the antibiotic metabolic pathways in river periphyton. The colonized periphyton was exposed to the graded concentration (0 μg/L (control), 0.5 μg/L (low), 5 μg/L (medium), 50 μg/L (high)) of ERY and ROX, respectively, for 7 days. Herein, high levels of ERY and ROX altered the community composition by reducing the relative abundance of Chlorophyta in the eukaryotic community. Also, the Shannon and Simpson diversity indexes of prokaryotes were reduced, although similar effects were seldomly detected in the low and medium groups. In contrast to the unchanged carbon utilization capacity, the PSII reaction center involved in the periphytic photosynthesis was significantly inhibited by macrolides at high levels. In addition, both antibiotics had been degraded by periphyton, with the removal rate of 51.63-66.87% and 41.85-48.27% for ERY and ROX, respectively, wherein the side chain and ring cleavage were the main degradation pathways. Overall, this study provides an insight into the structural and functional toxicity and degradation processes of macrolides in river periphyton.

Advances in technology and utilization of natural resources for achieving carbon neutrality and a sustainable solution to neutral environment

The greatest environmental issue of the twenty-first century is climate change. Human-caused greenhouse gas emissions are increasing the frequency of extreme weather. Carbon dioxide (CO₂) accounts for 80% of human greenhouse gas emissions. However, CO₂ emissions and global temperature have risen steadily from pre-industrial times. Emissions data are crucial for most carbon emission policymaking and goal-setting. Sustainable and carbon-neutral sources must be used to create green energy and fossil-based alternatives to reduce our reliance on fossil fuels. Near-real-time monitoring of carbon emissions is a critical national concern and cutting-edge science. This review article provides an overview of the many carbon accounting systems that are now in use and are based on an annual time frame. The primary emphasis of the study is on the recently created carbon emission and eliminating sources and technology, as well as the current application trends for carbon neutrality. We also propose a framework for the most advanced naturally available carbon neutral accounting sources capable of being implemented on a large scale. Forming relevant data and procedures will help the "carbon neutrality" plan decision-making process. The formation of pertinent data and methodologies will give robust database support to the decision-making process for the "carbon neutrality" plan for the globe. In conclusion, this article offers some opinions, opportunities, challenges and future perspectives related to carbon neutrality and carbon emission monitoring and eliminating resources and technologies.

The Role of Nutrients and Nutritional Signals in the Pathogenesis of Vibrio cholerae

Vibrio cholerae, the agent of cholera, is a natural inhabitant of aquatic environments. Over the past decades, the importance of specific nutrients and micronutrients in the environmental survival, host colonization, and pathogenesis of this species has become increasingly clear. For instance, V. cholerae has evolved ingenious mechanisms that allow the bacterium to colonize and establish a niche in the intestine of human hosts, where it competes with commensals (gut microbiota) and other pathogenic bacteria for available nutrients. Here, we discuss the carbon and energy sources utilized by V. cholerae and what is known about the role of nutrition in V. cholerae colonization. We examine how nutritional signals affect virulence gene regulation and how interactions with intestinal commensal species can affect intestinal colonization.

Research status, challenges and future prospects of renewable synthetic fuel catalysts for CO2 photocatalytic reduction conversion

In recent years, with global climate change, the utilization of carbon dioxide as a resource has become an important goal of human society to achieve carbon peaking and carbon neutrality. Among them, the catalytic conversion of carbon dioxide to generate renewable fuels has received great attention. As one of these methods, photocatalysis has its unique properties and mechanism, which can only rely on sunlight without inputting other energy. It is an emerging discipline with great development prospects. The core of photocatalysis lies in the development of photocatalysts with high activity, high selectivity, low cost, and high durability. This review first introduces the background and mechanism of photocatalysis, then introduces various types of photocatalysts based on different substrates, and analyzes the methods and mechanisms to improve the activity and selectivity of photocatalysts. Finally, combining the plasmon effect with photocatalysis, the review analyzes the promoting effect of the plasmon effect on the photocatalytic carbon dioxide synthesis of renewable fuels, which provides a new idea for it.

Affecting analysis of the rheological characteristic and reservoir damage of CO2 fracturing fluid in low permeability shale reservoir

The fracturing property of liquid CO₂ fracturing fluid varies greatly due to the rheology of fracturing fluid during fracturing process. The main objective of this investigation is to study the rheology property of thickened liquid CO₂ by measuring the viscosity of thickened liquid CO₂ in different physical parameters of this prepared thickener and explain the causes of rheological changes. The results show that thickener content, branching content, and molecular weight of a thickener for all could significantly improve the rheology of liquid CO₂; the consistency coefficient K increased as they rose, but the rheological index n presented a decreased trend. Meanwhile, the mesh structure is proposed as a model to explain the rheological changes, and the large wetting angle means an excellent backflow, low reservoir damage, and low adsorption property. These results herein provide a basic reference to improve the CO₂ fracturing technology and molecular design of CO₂ thickener.

Bamboo charcoal enhances cellulase and urease activities during chicken manure composting: Roles of the bacterial community and metabolic functions

Microbial enzymes are crucial for material biotransformation during the composting process. In this study, we investigated the effects of adding bamboo charcoal (BC) (i.e., at 5%, 10%, and 20% corresponding to BC5, BC10, and BC20, respectively) on the enzyme activity levels during chicken manure composting. The results showed that BC10 could increase the cellulose and urease activities by 56% and 96%, respectively. The bacterial community structure in BC10 differed from those in the other treatments, and Luteivirga, Lactobacillus, Paenalcaligenes, Ulvibacter, Bacillus, Facklamia, Pelagibacterium, Sporosarcina, Cellvibrio, and Corynebacterium had the most important roles in composting. Compared with other treatments, BC10 significantly enhanced the average rates of degradation of carbohydrates (D-xylose (40%) and α-D-lactose (44%)) and amino acids (L-arginine (16%), L-asparagine (14%), and L-threonine (52%)). We also explored the associations among the bacterial community and their metabolic functions with the changes in the activities of enzymes. Network analysis demonstrated that BC10 altered the co-occurrence patterns of the bacterial communities, where Ulvibacter and class Bacilli were the keystone bacterial taxa with high capacities for degrading carbon source, and they were related to increases in the activities of cellulase and urease, respectively. The results obtained in this study may help to further enhance the efficiency of composting.

Alterations of stool metabolome, phenome, and microbiome of the marine fish, red sea bream, Pagrus major, following exposure to phenanthrene: A non-invasive approach for exposure assessment

The present study aimed to assess the impact of phenanthrene (Phe) on fish health by addressing the alteration of fecal characteristics, in lieu of collecting biomarkers that often involves injurious or even fatal sampling of organisms. The marine fish red sea bream, Pagrus major, was exposed to Phe at a concentration of 18 μg/L for 16 days followed by depuration for 13 days. We collected feces from Phe-exposed or control (Phe-free) fish and then analyzed the fecal metabolite profile (metabolome), carbon utilization of microbiota (phenome), and bacterial 16s rRNA gene sequence (microbiome). Along with the increase in physiological stress markers (SOD and EROD) in serum and liver, we noted the possible role of intestine as a Phe reservoir. Furthermore, abnormal fecal appearance (green coloration) and remarkable changes in fecal characteristics were observed. These changes include alterations of cholesterol and putrescine metabolism and the enhanced utilization of putrescine as a carbon source. Phe also altered the microbial community, with an increase in Phe-degrading bacteria such as Pseudomonas. Interestingly, these enteric impairments were ameliorated by depuration. Taken together, our findings suggest that these alterations in feces were associated with adaptive responses to environmentally relevant Phe exposure scenarios, and that stool samples are potential candidates for exposure assessment in fish.

A state-of-the-art review of quinoline degradation and technical bottlenecks

Quinoline is a critical raw material for the dye, metallurgy, pharmaceutical, rubber, and agrochemical industries, and its use poses a serious threat to human health and the ecological environment. Quinoline has carcinogenic, teratogenic and mutagenic effects on the human body through food accumulation. However, due to the steric hindrance of its bicyclic fused structure and its long photooxidation half-life, quinoline is too difficult to decompose naturally. To date, numerous technologies have been used to degrade quinoline, whereas only a few have been reviewed. Therefore, this paper is focused on offering a comprehensive overview of the state of quinoline degradation in an effort to improve its degradation efficiency and fully utilize the carbon and nitrogen within quinoline without causing any damage to the environment. Accordingly, the strains, research progress and mechanisms of various methods for degrading quinoline are explored and elucidated in detail, especially quinoline biodegradation and the combination of these technologies for efficient removal. The state-of-the-art processes and new findings of our team on the biofortification of quinoline degradation are also presented. Finally, research bottlenecks and gaps for future research were identified along with the prospects and resource utilization of quinoline. These discussions facilitate the realization of the zero discharge of quinoline.

A review of recent advancements in utilization of biomass and industrial wastes into engineered biochar

For past few years, biochar has gained a great deal of attention for its versatile utility in agricultural and environmental applications. The diverse functionality and environmental-friendly nature of biochar have motivated many researchers to delve into biochar researches and spurred rapid expansion of literature in recent years. Biochar can be produced from virtually all the biomass, but the properties of biochar are highly dependent upon the types of feedstock biomass and preparation methods. The overall performances of as-prepared biochar in treating soil and water contaminants is generally inferior to activated carbon due to its lower surface area and limited functionalities. This limitation has led to many follow-up studies that focused on improving material characteristics by imparting desired functionality. Such efforts have greatly advanced knowledge to produce better-performing engineered biochar with enhanced capability and versatility. To this end, this review was prepared to compile recent advancements in fabrication and application of engineered biochar, especially with respect to the influences of biomass feedstock on the properties of biochar and the utilization of industrial wastes in fabrication of engineered biochar.

Revealing of sugar utilization systems in Halomonas sp. YLGW01 and application for poly(3-hydroxybutyrate) production with low-cost medium and easy recovery

Poly(3-hydroxybutyrate) (PHB) is a common polyhydroxyalkanoate (PHA) with potential as an alternative for petroleum-based plastics. Previously, we reported a new strain, Halomonas sp. YLGW01, which hyperproduces PHB with 94% yield using fructose. In this study, we examined the PHB production machinery of Halomonas sp. YLGW01 in more detail by deep-genome sequencing, which revealed a 3,453,067-bp genome with 65.1% guanine-cytosine content and 3054 genes. We found two acetyl-CoA acetyltransferases (Acetoacetyl-CoA thiolase, PhaA), one acetoacetyl-CoA reductase (PhaB), two PHB synthases (PhaC1, PhaC2), PHB depolymerase (PhaZ), and Enoyl-CoA hydratase (PhaJ) in the genome, along with two fructose kinases and fructose transporter systems, including the phosphotransferase system (PTS) and ATP-binding transport genes. We then examined the PHB production by Halomonas sp. YLGW01 using high-fructose corn syrup (HFCS) containing fructose, glucose, and sucrose in sea water medium, resulting in 7.95 ± 0.11 g/L PHB (content, 67.39 ± 0.34%). PHB was recovered from Halomonas sp. YLGW01 using different detergents; the use of Tween 20 and SDS yielded micro-sized granules with high purity. Overall, these results reveal the distribution of PHB synthetic genes and the sugar utilization system in Halomonas sp. YLGW01 and suggest a possible method for PHB recovery.

Mikania micrantha invasion enhances the carbon (C) transfer from plant to soil and mediates the soil C utilization through altering microbial community

Exotic plant invasion alters the structure and coverage of terrestrial vegetation and affects the carbon (C) stocks in ecosystems. Previous studies have shown the increases in the C stocks with increasing invasive plants, but these results remain contentious. Soil microbial communities are usually altered by plant invasion, which potentially influences the C cycling underground. We hypothesized that the plant invasion-caused dynamic changes in soil microbes would lead to the corresponding change in soil C accumulation. Using greenhouse experiments we simulated different invader intensities through varying the relative abundance of invasive species Mikania micrantha and its co-occurring native species Paederia scandens. By analyzing ¹³C-phospholipid fatty acid we found the invasive M. micrantha assimilated more ¹³C and transferred faster the fixed ¹³C through different tissues to soils, as compared to native P. scandens. Soil microbial components, i.e., i15:0, 16:0, 10Me16:0, 18:1w9c and 18:2w6,9 were mainly using the photo-assimilated ¹³C. In addition, we found a hump-shaped relationship between soil net ¹³C accumulate rate and rhizosphere microbial biomass, indicating that the soil C accumulation may be either enhanced or reduced in invaded ecosystems, depending on microbe abundance.

Insight into a highly polymorphic endophyte isolated from the roots of the halophytic seepweed Suaeda salsa: Laburnicola rhizohalophila sp. nov. (Didymosphaeriaceae, Pleosporales)

We surveyed root endophytic fungi of the coastal halophyte Suaeda salsa and detected a population of a novel species that we described here as Laburnicola rhizohalophila sp. nov. No sexual sporulating structure was observed. Instead, it produced a large amount of thalloconidia, 0-1 transverse septa, hyaline to darkly pigmented, often peanut-shaped and sometimes dumbbell-shaped, both ends enlarged with numerous oil droplets inside the hyphal cells. Surprisingly, a high degree of phenotypic and physiological intraspecific variation (e.g., salinity tolerance, growth under different carbon:nitrogen ratios, and carbon utilization pattern) was recorded. The inoculation test indicated that the isolates could successfully infect host roots and form microsclerotia-like structures in cortical cells, a typical trait of dark septate endophytes (DSEs). Furthermore, most isolates were shown to promote host seedling growth. To evaluate conspecificity and infer its phylogenetic affinity, multiloci data including nuclear rRNA loci (ITS1 and 2, partial 28S), partial RNA Polymerase II second-largest subunit (rpb2), and partial translation elongation factor-1α (tef1) were characterized. Genealogical concordance phylogenetic species recognition (GCPSR) detected a genetically isolated clade of L. rhizohalophila within the Pleosporales in the Didymosphaeriaceae. Maximum likelihood phylogenetic reconstruction revealed that the endophytic fungus was genetically close to Laburnicoladactylidis but separated by a relatively long genetic distance. Our work highlights that the pleosporalean taxa might represent an underexplored reservoir of root DSEs.

Effects of rhamnolipid and Tween-80 on cellulase activities and metabolic functions of the bacterial community during chicken manure composting

Metabolism by microorganisms is the basis of composting. In this study, the dynamic changes in the enzyme activity levels, bacterial community structure, and metabolism functions were investigated during chicken manure composting with an added bio-surfactant (rhamnolipid) or chemical surfactant (Tween-80). The results showed that rhamnolipid and Tween-80 improved the quality of the finished compost in terms of the C/N ratio, water-soluble carbon content, germination index, E4/E6 ratio, and the cellulase activity, especially with Tween-80. Furthermore, the bacterial communities were determined by high-throughput sequencing, and their metabolism functions were evaluated using the PICRUSt and Biolog methods. Tween-80 greatly influenced the bacterial community structure, where it enhanced the abundances of bacteria that degrade cellulose and lignin (e.g., members of the order Bacillales) and the capacities for carbohydrate and amino acid metabolism. Network analysis also showed that the order Bacillales was closely related to the metabolism of characteristic carbon sources, especially carbohydrates.

Succession of organics metabolic function of bacterial community in response to addition of earthworm casts and zeolite in maize straw composting

Succession and metabolism functions of bacterial communities were determined in maize straw composting with earthworm casts and zeolite addition by using high-throughput sequencing, Biolog and PICRUSt. Results showed that earthworm casts and zeolite addition increased the temperature, decreased NH₄⁺ contents and affected bacterial community structure. The relative abundances of Firmicutes and Betaproteobacteria increased with earthworm casts and zeolite addition in the late stage. The abundances of genes related to carbohydrate metabolism, amino acid metabolism, and energy metabolism were increased by these two additives in the early stage, but decreased in the late stage. Network analysis demonstrated that members of Bacillaceae were identified as the keystone taxa. Temperature showed negative relationship with Georgenia, while NH₄⁺ exhibited positive associations with Georgenia, Devosia, Ruania and Mycobacterium. These results indicated that earthworm casts and zeolite addition benefitted the keystone species and enhanced the metabolism capacity of bacterial community, thereby improved the quality of compost.

Succession of organics metabolic function of bacterial community in swine manure composting

Organics metabolic function of bacterial communities was evaluated in 60 days composting of swine manure and pumice by using MiSeq sequencing, PICRUSt and Biolog tools. The diversity of bacterial communities significantly decreased during the first 10 days, and gradually increased in the cooling and curing phase. The PICRUSt and Biolog analysis indicated that carbohydrate, lipid and amino acids metabolisms were relatively higher in the thermophilic phases. Xenobiotics biodegradation and metabolism, lipid metabolism, terpenoids and polyketides and biosynthesis of other secondary metabolites were mainly detected in the curing phases. Canonical correspondence analysis (CCA) indicated that the succession of bacterial community and organics utilization characteristics were highly affected by the temperature, moisture and oxidation reduction potential (ORP) in the swine composting system.

FreB is involved in the ferric metabolism and multiple pathogenicity-related traits of Verticillium dahliae

Ferric reductases are integral membrane proteins involved in the reduction of environmental ferric iron into the biologically available ferrous iron. In the most overwhelming phytopathogenic fungus, Verticillium dahliae, these ferric reductase are not studied in details. In this study we explored the role of FreB gene (VDAG_06616) in the ferric reduction and virulence of V. dahliae by generating the knockout mutants (ΔFreB) and complementary strains (ΔFreB-C) using protoplast transformation. When cultured on media supplemented with FeSO₄, FeCl₃ and no iron, ΔFreB exhibited significantly reduced growth and spore production especially on media with no iron. Transmembrane ferric reductase activity of ΔFreB was decreased up to 50% than wild type strains (Vd-wt). The activity was fully restored in ΔFreB-C. Meanwhile, the expression levels of other related genes (Frect-4, Frect-5, Frect-6 and Met) were obviously increased in ΔFreB. Compared with the Vd-wt and ΔFreB-C, ΔFreB-1 and ΔFreB-2 were impaired in colony diameter and spore number on different carbon sources (starch, sucrose, galactose and xylose). ΔFreB-1 and ΔFreB-2 were also highly sensitive to oxidative stress as revealed by the plate diffusion assay when 100 µM H₂O₂ was applied to the fungal culture. When Nicotiana benthamiana plants were inoculated, ΔFreB exhibited less disease symptoms than Vd-wt and ΔFreB-C. In conclusion, the present findings not only indicate that FreB mediates the ferric metabolism and is required for the full virulence in V. dahliae, but would also accelerate future investigation to uncover the pathogenic mechanism of this fungus.

Kinetic modeling of Shewanella baltica KB30 growth on different substrates through respirometry

Background

Shewanella baltica KB30 was isolated from seawater collected in Kandalaksha Bay, White Sea (Russia). This strain is known for its ability to grow on a pool of different substrates, including carbohydrates, carboxylic and amino acids, and lipids. However, no data are available on its metabolic efficiency in relation to the use of different carbon sources typologies. This work represents the first attempt to characterize S. baltica by its heterotrophic kinetic performance.

Results

Growth and substrate consumption, during the biodegradation of sodium acetate, glucose, tween 80 and peptone, were analyzed through a respirometric method. To find the model best fitting the experimental data and to obtain the kinetic parameters, the equations of Monod, Moser, Contois and Tessier were applied. The kinetic behavior of S. baltica was fitted to Monod model for sodium acetate and tween 80, while it was adjusted to Contois model for glucose and peptone. In this regard, peptone was consumed faster than the other substrates, as indicated by the highest values of substrate degradation rate, which exceeded 60 mg O₂ L⁻¹ h⁻¹.

Conclusions

Proteolytic metabolism was favored than lipidic and glucidic metabolism, which could contribute much more to mineralization and recycling of proteins than lipids and carbohydrates.

Energy and mass balances related to climate change and remediation

The goal of this paper is to provide a forum for a broad interdisciplinary group of scientists and engineers to see how concepts of climate change, energy, and carbon remediation strategies are related to quite basic scientific principles. A secondary goal is to show relationships between general concepts in traditional science and engineering fields and to show how they are relevant to broader environmental concepts. This paper revisits Fourier's early mathematical derivation of the average temperature of the Earth from first principles, i.e. an energy balance common to chemical and environmental engineering. The work then uses the concept of mass balance to critically discuss various carbon remediation strategies. The work is of interest to traditional scientists/engineers, but also it is potentially useful as an educational document in advanced undergraduate science or engineering classes.

Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts

BACKGROUND

Isoprene, a volatile C5 hydrocarbon, is an important platform chemical used in the manufacturing of synthetic rubber for tires and various other applications, such as elastomers and adhesives.

RESULTS

In this study, Escherichia coli MG1655 harboring Populus trichocarpa isoprene synthase (PtispS) and the exogenous mevalonate (MVA) pathway produced 80 mg/L isoprene. Codon optimization and optimal expression of the ispS gene via adjustment of the RBS strength and inducer concentration increased isoprene production to 199 and 337 mg/L, respectively. To augment expression of MVA pathway genes, the MVA pathway was cloned on a high-copy plasmid (pBR322 origin) with a strong promoter (P_trc), which resulted in an additional increase in isoprene production up to 956 mg/L. To reduce the formation of byproducts derived from acetyl-CoA (an initial substrate of the MVA pathway), nine relevant genes were deleted to generate the E. coli AceCo strain (E. coli MG1655 ΔackA-pta, poxB, ldhA, dld, adhE, pps, and atoDA). The AceCo strain harboring the ispS gene and MVA pathway showed enhanced isoprene production of 1832 mg/L in flask culture with reduced accumulation of byproducts.

CONCLUSIONS

We achieved a 23-fold increase in isoprene production by codon optimization of PtispS, augmentation of the MVA pathway, and deletion of genes involved in byproduct formation.

Allochthonous Carbon--a Major Driver of Bacterioplankton Production in the Subarctic Northern Baltic Sea

Heterotrophic bacteria are, in many aquatic systems, reliant on autochthonous organic carbon as their energy source. One exception is low-productive humic lakes, where allochthonous dissolved organic matter (ADOM) is the major driver. We hypothesized that bacterial production (BP) is similarly regulated in subarctic estuaries that receive large amounts of riverine material. BP and potential explanatory factors were measured during May-August 2011 in the subarctic Råne Estuary, northern Sweden. The highest BP was observed in spring, concomitant with the spring river-flush and the lowest rates occurred during summer when primary production (PP) peaked. PLS correlations showed that ∼60% of the BP variation was explained by different ADOM components, measured as humic substances, dissolved organic carbon (DOC) and coloured dissolved organic matter (CDOM). On average, BP was threefold higher than PP. The bioavailability of allochthonous dissolved organic carbon (ADOC) exhibited large spatial and temporal variation; however, the average value was low, ∼2%. Bioassay analysis showed that BP in the near-shore area was potentially carbon limited early in the season, while BP at seaward stations was more commonly limited by nitrogen-phosphorus. Nevertheless, the bioassay indicated that ADOC could contribute significantly to the in situ BP, ∼60%. We conclude that ADOM is a regulator of BP in the studied estuary. Thus, projected climate-induced increases in river discharge suggest that BP will increase in subarctic coastal areas during the coming century.

Effects of nitrogen addition on soil microbes and their implications for soil C emission in the Gurbantunggut Desert, center of the Eurasian Continent

Nitrogen (N) deposition can influence carbon cycling of terrestrial ecosystems. However, a general recognition of how soil microorganisms respond to increasing N deposition is not yet reached. We explored soil microbial responses to two levels of N addition (2.5 and 5 gN m(-2) yr(-1)) in interplant soil and beneath shrubs of Haloxylon ammodendron and their consequences to soil respiration in the Gurbantunggut Desert, northwestern China from 2011 to 2013. Microbial biomass and respiration were significantly higher beneath H. ammodendron than in interplant soil. The responses of microbial biomass carbon (MBC) and microbial respiration (MR) showed opposite responses to N addition in interplant and beneath H. ammodendron. N addition slightly increased MBC and MR in interplant soil and decreased them beneath H. ammodendron, with a significant inhibition only in 2012. N addition had no impacts on the total microbial physiological activity, but N addition decreased the labile carbon substrate utilization beneath H. ammodendron when N addition level was high. Phospholipid fatty acid (PLFA) analysis showed that N addition did not alter the soil microbial community structure as evidenced by the similar ratios of fungal to bacterial PLFAs and gram-negative to gram-positive bacterial PLFAs. Microbial biomass and respiration showed close correlations with soil water content and dissolved carbon, and they were independent of soil inorganic nitrogen across three years. Our study suggests that N addition effects on soil microorganisms and carbon emission are dependent on the respiratory substrates and water availability in the desert ecosystem.

Differentiating Indigenous Soybean Bradyrhizobium and Rhizobium spp. of Indian Soils

Soybean is extensively cultivated worldwide and is the largest source of biologically fixed nitrogen among legumes. It is nodulated by both slow and fast growing rhizobia. Indigenous soybean rhizobia in Vertisols of central India were assessed for utilization of 35 carbon sources and intrinsic resistance to 19 antibiotics. There was greater utilization of trehalose and raffinose by fast growers (87 and 73 % by fast vs. 35 and 30 % by slow growers); but slow growers had higher ability to utilize glucosamine (75 % by slow vs. 33 % by fast growers). A larger proportion of slow growers were resistant to vancomycin, polymyxin-B and rifampicin (70, 65 and 55 %) compared to fast growers (13, 7 and 7 % each). Among the two 16S rRNA sequence types in the slow growers, those belonging to Bradyrhizobium spp. utilized glucosamine while those belonging to Rhizobium radiobacter did not. All the fast growers had 16S rRNA homology to R. radiobacter and majority could not utilize glucosamine. It is suggested that during initial isolations and screening of rhizobia in strain selection programmes, using carbon sources like glucosamine and antibiotics like vancomycin, polymyxin-B and rifampicin in the media may provide a simple way of distinguishing Bradyrhizobium strains from R. radiobacter among the slow growers.