Identifying drivers of non-stationary climate-growth relationships of European beech

The future performance of the widely abundant European beech (Fagus sylvatica L.) across its ecological amplitude is uncertain. Although beech is considered drought-sensitive and thus negatively affected by drought events, scientific evidence indicating increasing drought vulnerability under climate change on a cross-regional scale remains elusive. While evaluating changes in climate sensitivity of secondary growth offers a promising avenue, studies from productive, closed-canopy forests suffer from knowledge gaps, especially regarding the natural variability of climate sensitivity and how it relates to radial growth as an indicator of tree vitality. Since beech is sensitive to drought, we in this study use a drought index as a climate variable to account for the combined effects of temperature and water availability and explore how the drought sensitivity of secondary growth varies temporally in dependence on growth variability, growth trends, and climatic water availability across the species' ecological amplitude. Our results show that drought sensitivity is highly variable and non-stationary, though consistently higher at dry sites compared to moist sites. Increasing drought sensitivity can largely be explained by increasing climatic aridity, especially as it is exacerbated by climate change and trees' rank progression within forest communities, as (co-)dominant trees are more sensitive to extra-canopy climatic conditions than trees embedded in understories. However, during the driest periods of the 20th century, growth showed clear signs of being decoupled from climate. This may indicate fundamental changes in system behavior and be early-warning signals of decreasing drought tolerance. The multiple significant interaction terms in our model elucidate the complexity of European beech's drought sensitivity, which needs to be taken into consideration when assessing this species' response to climate change.

Non-linear response of Norway spruce to climate variation along elevational and age gradients in the Carpathians

Climate change, namely increased warming coupled with a rise in extreme events (e.g., droughts, storms, heatwaves), is negatively affecting forest ecosystems worldwide. In these ecosystems, growth dynamics and biomass accumulation are driven mainly by environmental constraints, inter-tree competition, and disturbance regimes. Usually, climate-growth relationships are assessed by linear correlation due to the simplicity and straightforwardness of modeling. However, applying this method may bias results, since the ecological and physiological responses of trees to environmental factors are non-linear, and usually bell-shaped. In the Eastern Carpathian, Norway spruce is at the southeasternmost edge of its natural occurrence; this region is thus potentially vulnerable to climate change. A non-linear assessment of climate-growth relationships using machine-learning techniques for Norway spruce in this area had not been conducted prior to this study. To address this knowledge gap, we analyzed a large tree-ring network from 158 stands, with over 3000 trees of varying age distributed along an elevational gradient. Our results showed that non-linearity in the growth-climate response of spruce was season-specific: temperatures from the previous autumn and current growing season, along with water availability during winter, induced a bell-shaped response. Moreover, we found that at low elevations, spruce growth was mainly limited by water availability in the growing season, while winter temperatures are likely to have had a slight influence along the entire elevational gradient. Furthermore, at elevations lower than 1400 m, spruce trees were also found to be sensitive to previous autumn water availability. Overall, our results shed new light on the response of Norway spruce to climate in the Carpathians, which may aid in management decisions.

Incorporating high-resolution climate, remote sensing and topographic data to map annual forest growth in central and eastern Europe

To enhance our understanding of forest carbon sequestration, climate change mitigation and drought impact on forest ecosystems, the availability of high-resolution annual forest growth maps based on tree-ring width (TRW) would provide a significant advancement to the field. Site-specific characteristics, which can be approximated by high-resolution Earth observation by satellites (EOS), emerge as crucial drivers of forest growth, influencing how climate translates into tree growth. EOS provides information on surface reflectance related to forest characteristics and thus can potentially improve the accuracy of forest growth models based on TRW. Through the modelling of TRW using EOS, climate and topography data, we showed that species-specific models can explain up to 52 % of model variance (Quercus petraea), while combining different species results in relatively poor model performance (R2 = 13 %). The integration of EOS into models based solely on climate and elevation data improved the explained variance by 6 % on average. Leveraging these insights, we successfully generated a map of annual TRW for the year 2021. We employed the area of applicability (AOA) approach to delineate the range in which our models are deemed valid. The calculated AOA for the established forest-type models was 73 % of the study region, indicating robust spatial applicability. Notably, unreliable predictions predominantly occurred in the climate margins of our dataset. In conclusion, our large-scale assessment underscores the efficacy of combining climate, EOS and topographic data to develop robust models for mapping annual TRW. This research not only fills a critical void in the current understanding of forest growth dynamics but also highlights the potential of integrated data sources for comprehensive ecosystem assessments.

Early warning signals indicate climate change-induced stress in Norway spruce in the Eastern Carpathians

Climate change is affecting forest ecosystems globally, in particular through warming as well as increases in the frequency and intensity of extreme events. Norway spruce (Picea abies (L.) Karst.) is one of the most important coniferous tree species in Europe. In recent extremely dry years in Central Europe, spruce suffered and large dieback has been observed. In parts of Eastern Europe, however, no large-scale decline in spruce has been reported so far, though anticipated changes in climate pose the question how the future of these forests may look like. To assess the current state of spruce forests in Eastern Europe, we established a tree-ring network consisting of 157 Norway spruce chronologies (from >3000 trees) of different ages distributed along elevational transects in the Eastern Carpathians, Romania. We evaluated early warning signals of climate change-induced stress, i.e. (1) growth decline, (2) increased sensitivity of tree growth (assessed over the statistics first-order autocorrelation and standard deviation), and (3) increased growth synchrony. A pronounced growth decline was observed over the last two decades, which was strongest in younger stands and at lower elevations. However, growth sensitivity and synchrony did not show consistent patterns, suggesting that forest decline may not be immediately imminent. Overall, our findings highlight an increased vulnerability of spruce in the Eastern Carpathians. With ongoing climate change, spruce dieback may be expected in this part of Europe as well.

Surface ozone risk to human health and vegetation in tropical region: The case of Thailand

Tropospheric ozone (O3) is a threat to vegetation and human health over the world, in particular in Asia. Knowledge on O3 impacts on tropical ecosystems is still very limited. An O3 risk assessment to crops, forests, and people from 25 monitoring stations across the tropical and subtropical Thailand during 2005-2018 showed that 44% of sites exceeded the critical levels (CLs) of SOMO35 (i.e., the annual Sum Of daily maximum 8-h Means Over 35 ppb) for human health protection. The concentration-based AOT40 CL (i.e., sum of the hourly exceedances above 40 ppb for daylight hours during the assumed growing season) was exceeded at 52% and 48% of the sites where the main crops rice and maize are present, respectively, and at 88% and 12% of the sites where evergreen or deciduous forests are present, respectively. The flux-based metric PODY (i.e., Phytotoxic Ozone Dose above a threshold Y of uptake) was calculated and was found to exceed the CLs at 1.0%, 1.5%, 20.0%, 1.5%, 0% and 68.0% of the sites where early rice, late rice, early maize, late maize, evergreen forests, and deciduous forests can grow, respectively. Trend analysis indicated that AOT40 increased over the study period (+5.9% year-1), while POD1 decreased (- 5.3% year-1), suggesting that the role of climate change in affecting the environmental factors that control stomatal uptake cannot be neglected. These results contribute novel knowledge on O3 threat to human health, forest productivity, and food security in tropical and subtropical areas.

The Response of Beech (Fagus sylvatica L.) Populations to Climate in the Easternmost Sites of Its European Distribution

In the context of forecasted climate change scenarios, the growth of forest tree species at their distribution margin is crucial to adapt current forest management strategies. Analyses of beech (Fagus sylvatica L.) growth have shown high plasticity, but easternmost beech populations have been rarely studied. To describe the response of the marginal beech population to the climate in the far east sites of its distribution, we first compiled new tree ring width chronologies. Then we analyzed climate-growth relationships for three marginal beech populations in the Republic of Moldova. We observed a relatively high growth rate in the marginal populations compared to core distribution sites. Our analyses further revealed a distinct and significant response of beech growth to all climatic variables, assessing for the first time the relationship between growth and vapor pressure deficit (VPD) which described how plant growth responds to drought. These results highlight that accumulated water deficit is an essential limiting factor of beech growth in this region. In conclusion, beech growth in the easternmost marginal population is drought-limited, and the sensitivity to VPD will need to be considered in future studies to update the forest management of other economic and ecologically important species.

Do Different Tree-Ring Proxies Contain Different Temperature Signals? A Case Study of Norway Spruce (Picea abies (L.) Karst) in the Eastern Carpathians

One of the most important proxy archives for past climate variation is tree rings. Tree-ring parameters offer valuable knowledge regarding how trees respond and adapt to environmental changes. Trees encode all environmental changes in different tree-ring parameters. In this study, we analyzed how air temperature is encoded in different Norway spruce tree-ring proxies along an altitude gradient in an intramountain valley of the Carpathians. The study area, in the Gheorgheni region, Romania (Eastern Carpathians), has a mountain climate with a frequent temperature inversion in winter. The climate−growth relationship was analyzed for two contrasting altitudes: low elevation, i.e., below 1000 m a.s.l., and high elevation, i.e., above 1500 m a.s.l. Two local weather stations, one in the valley and the other on the upper part of the mountains, provide daily temperatures (Joseni—750 m a.s.l. and Bucin—1282 m a.s.l.). The bootstrap Pearson correlation between cumulative daily temperature data and three tree-ring proxies (tree-ring width—TRW, basal area increment—BAI, and blue intensity—BI) was computed for each series. The results show that elevation modulates the climate response pattern in the case of BI, and remains relatively similar for TRW and BAI. The winter temperature’s positive influence on spruce growth was observed in both TRW and BAI chronologies. Additionally, the BAI chronology highlights a positive relationship with summer temperature. The highest correlation coefficient (r = 0.551, p < 0.05, n = 41) was recorded between BI residual chronology from high elevation series and summer/autumn temperature from the upper-part weather station for a cumulative period of 59 days (the second half of August to the beginning of October). Our results show that, for this intramountain valley of the Eastern Carpathians, different tree-ring proxies capture different climate signals.

What Is the Force-per-Molecule Inside a Biomaterial Having Randomly Oriented Units?

Both synthetic and natural protein-based materials are made of randomly oriented cross-linked molecules. Here we introduce a coarse-grained approach to estimate the average force-per-molecule for materials made from globular proteins. Our approach has three steps: placement of molecules inside a unit volume, cross-linking, and trimming to remove the protein domains that do not participate to the force response. Following this procedure, we estimate the number of active domains per cross-section area, that allows for a direct calculation of the force-per-domain. Among the variables considered, we found that concentration was the most sensitive parameter. We then synthesized protein hydrogels made from BSA and polyprotein L and measured the stresses that these materials can withstand. We found that forces-per-molecules of up to 17 pN per domain can be obtained experimentally using protein hydrogels. Our approach represents an important step toward understanding the scaling of tension in biomaterials.

Mechanical regulation of talin through binding and history-dependent unfolding

Talin is a force-sensing multidomain protein and a major player in cellular mechanotransduction. Here, we use single-molecule magnetic tweezers to investigate the mechanical response of the R8 rod domain of talin. We find that under various force cycles, the R8 domain of talin can display a memory-dependent behavior: At the same low force (<10 pN), the same protein molecule shows vastly different unfolding kinetics. This history-dependent behavior indicates the evolution of a unique force-induced native state. We measure through mechanical unfolding that talin R8 domain binds one of its ligands, DLC1, with much higher affinity than previously reported. This strong interaction can explain the antitumor response of DLC1 by regulating inside-out activation of integrins. Together, our results paint a complex picture for the mechanical unfolding of talin in the physiological range and a new mechanism of function of DLC1 to regulate inside-out activation of integrins.

Geographical Distribution of Three Forest Invasive Beetle Species in Romania

Ips duplicatus (Sahlberg, 1836), Xylosandrus germanus (Blandford, 1894) and Neoclytus acuminatus (Fabricius, 1775) are invasive species reported in Romania, but their current distribution is poorly known. The research aim was to provide new information on this issue. A survey was conducted over the period 2015–2017 in 82 locations, using flight-interception traps and bottle traps, baited with different attractants. Data obtained in our other unpublished studies were also taken into account. A total of 35,136 I. duplicatus beetles were collected in 30 survey locations. The highest captures were in the log yards of some factories processing logs of Norway spruce (Picea abies (L.) H. Karst.). Considering all known records so far, most of these are in the eastern part of Romania, where an outbreak took place during the years 2005–2014, mainly in spruce stands growing outside their natural range. During the survey, 4259 specimens of X. germanus were collected in 35 locations, but in our other studies the species was found in 13 additional places. It was collected at altitudes of 18–1200 m, and the largest catches were from beech stands, growing at 450–950 m. N. acuminatus was found in only six locations, in the western and southern parts of the country, at low altitudes, in tree stands composed of Fraxinus excelsior L., Quercus spp. and other broadleaf species, as well as in broadleaf log yards. The results suggest that I. duplicatus is established in most parts of the Norway spruce’s range, X. germanus is still spreading in the country, with some areas having quite high populations, while N. acuminatus is present only in the warmest regions of the country.

Nonexponential kinetics in captured in sequential unfolding of polyproteins over a range of loads

While performing under mechanical loads in vivo, polyproteins are vitally involved in cellular mechanisms such as regulation of tissue elasticity and mechano-transduction by unfolding their comprising domains and extending them. It is widely thought that the process of sequential unfolding of polyproteins follows an exponential kinetics as the individual unfolding events exhibit identical and identically distributed (iid) Poisson behavior. However, it was shown that under high loads, the sequential unfolding kinetics displays nonexponential kinetics that alludes to aging by a subdiffusion process. Statistical order analysis of this kinetics indicated that the individual unfolding events are not iid, and cannot be defined as a Poisson (memoryless) process. Based on numerical simulations it was argued that this behavior becomes less pronounced with lowering the load, therefore it is to be expected that polyproteins unfolding under lower forces will follow a Poisson behavior. This expectation serves as the motivation of the current study, in which we investigate the effect of force lowering on the unfolding kinetics of Poly-L₈ under varying loads, specifically high (150, 100 ​pN) and moderate-low (45, 30, 20 ​pN) forces. We found that a hierarchy among the unfolding events still exists even under low loads, again resulting in nonexponential behavior. We observe that analyzing the dwell-time distributions with stretched-exponentials and power laws give rise to different phenomenological trends. Using statistical order analysis, we demonstrated that even under the lowest load, the sequential unfolding cannot be considered as iid, in accord with the power law distribution. Additional free energy analysis revealed the contribution of the unfolded segments elasticity that scales with the force on the overall one-dimensional contour of the energy landscape, but more importantly, it discloses the hierarchy within the activation barriers during sequential unfolding that account for the observed nonexponentiality.

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Poly-L₈ unfolding shows nonexponential kinetics at forces ranging from 150 to 20 ​pN.

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Different phenomenological trends are observed for the dwell-time distributions.

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The unfolding events were shown to be dependent and not identically distributed.

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Free energy analysis reveals elastic impact and hierarchy in the unfolding barriers.

Kinetic Method of Producing Pores Inside Protein-Based Biomaterials without Compromising Their Structural Integrity

Hydrogels made from globular proteins cross-linked covalently into a stable network are becoming an important type of biomaterial, with applications in artificial tissue design and cell culture scaffolds, and represent a promising system to study the mechanical and biochemical unfolding of proteins in crowded environments. Due to the small size of the globular protein domains, typically 2-5 nm, the primary network allows for a limited transfer of protein molecules and prevents the passing of particles and aggregates with dimensions over 100 nm. Here, we demonstrate a method to produce protein materials with micrometer-sized pores and increased permeability. Our approach relies on forming two competing networks: a covalent network made from cross-linked bovine serum albumin (BSA) proteins via a light-activated reaction and a physical network triggered by the aggregation of a polysaccharide, alginate, in the presence of Ca²⁺ ions. By fine-tuning the reaction times, we produce porous-protein hydrogels that retain the mechanical characteristics of their less-porous counterparts. We further describe a simple model to investigate the kinetic balance between the nucleation of alginate and cross-linking of BSA molecules and find the upper rate of the alginate aggregation reaction driving pore formation. By enabling a more significant permeability for protein-based materials without compromising their mechanical response, our method opens new vistas into studying protein-protein interactions and cell growth and designing novel affinity methods.

Comparative photophysical properties of some widely used fluorescent proteins under two-photon excitation conditions

Understanding the photophysical properties of fluorescent proteins (FPs), such as emission and absorption spectra, molecular brightness, photostability, and photo-switching, is critical to the development of criteria for their selection as tags for fluorescent-based biological applications. While two-photon excitation imaging techniques have steadily gained popularity - due to comparatively deeper penetration depth, reduced out-of-focus photobleaching, and wide separation between emission spectra and two-photon excitation spectra -, most studies reporting on the photophysical properties of FPs tend to remain focused on single-photon excitation. Here, we report our investigation of the photophysical properties of several commonly used fluorescent proteins using two-photon microscopy with spectral resolution in both excitation and emission. Our measurements indicate that not only the excitation (and sometimes emission) spectra of FPs may be markedly different between single-photon and two-photon excitation, but also their relative brightness and their photo-stability. A good understanding of the photophysical properties of FPs under two-photon excitation is essential for choosing the right tag(s) for a desired experiment.

Impact of ground-level ozone on Mediterranean forest ecosystems health

Given the high ozone concentrations observed in the Mediterranean region during summer, it is crucial to extend our knowledge on the potential ozone impacts on forest health with in situ studies, especially to protect typical endemic forests of the Mediterranean basin. This study is focused on ozone measurements and exposures over the Eastern Adriatic coast and on the calculation of different O₃ metrics, i.e., accumulated exposure AOT40 (AOT40_dir, AOT40_ICP, AOT40_pheno) and stomatal O₃ fluxes with an hourly threshold of uptake (Y) to represent the detoxification capacity of trees (PODY, with Y = 0, 1, 2 nmol O₃ m^-2 s^-1) used for forest protection. Finally, we provide an assessment of the relationships between the forest response indicators and environmental variables. Passive ozone measurements and monitoring of forest health indicators, namely growth and crown defoliation, were performed for Quercus ilex, Quercus pubescens, Pinus halepensis, and Pinus nigra forests. Results showed that, for all the analysed species, ozone levels were close to reached the upper plausibility limits for passive monitoring of air quality at forest sites (100 ppb), with the highest values found on P. halepensis in the summer period. O₃ metrics based on exposure were found to be higher in pine plots than in oak plots, while the highest values of uptake-based metrics were found on P. nigra. Regarding relationships between environmental variables and forest-health response indicators, the crown defoliation was significantly correlated with the soil water content at various depth while the tree growth was correlated with the different O₃ metrics. The most important predictors affecting tree growth of Q. pubescens and Q. ilex were AOT40_pheno and AOT40_dir and POD0 for P. nigra.

Climate warming induced synchronous growth decline in Norway spruce populations across biogeographical gradients since 2000

Covering large parts of Europe, Norway spruce (Picea abies L Karst.) plays an important role in the adaptation strategy of forest services to future climate change. Although dendroecology can provide valuable information on the past relationships between tree growth and climate, most previous studies were biased towards species-specific distribution limits, where old individuals grow slowly under extreme conditions. In the present study, we investigated the growth variability and climate sensitivity of 2851 Norway spruce trees along longitudinal (E 12-26°), latitudinal (N 45-51°), and elevation (118-1591 m a.s.l.) gradients in central-eastern Europe. We reveal that summer weather significantly affects the radial growth of spruce trees, but the effects strongly vary along biogeographical gradients. Extreme summer heatwaves in 2000 and 2003 reduced the growth rates by 10-35%, most pronounced in the southern Carpathians. In contrast to the population in the Czech Republic, climate warming induced a synchronous decline in the growth rates across biogeographical gradients in the Carpathian arc. By demonstrating the increased vulnerability of Norway spruce under warmer climate conditions, we recommended that the forest services and conservation managers replace or admix monocultures of this species with more drought-resilient mixtures including fir, beech and other broadleaved species.

Does protein unfolding play a functional role in vivo?

Unfolding and refolding of multidomain proteins under force have yet to be recognized as a major mechanism of function for proteins in vivo. In this review, we discuss the inherent properties of multidomain proteins under a force vector from a structural and functional perspective. We then characterize three main systems where multidomain proteins could play major roles through mechanical unfolding: muscular contraction, cellular mechanotransduction, and bacterial adhesion. We analyze how key multidomain proteins for each system can produce a gain-of-function from the perspective of a fine-tuned quantized response, a molecular battery, delivery of mechanical work through refolding, elasticity tuning, protection and exposure of cryptic sites, and binding-induced mechanical changes. Understanding how mechanical unfolding and refolding affect function will have important implications in designing mechano-active drugs against conditions such as muscular dystrophy, cancer, or novel antibiotics.

Cation-induced shape programming and morphing in protein-based hydrogels

Smart materials that are capable of memorizing a temporary shape, and morph in response to a stimulus, have the potential to revolutionize medicine and robotics. Here, we introduce an innovative method to program protein hydrogels and to induce shape changes in aqueous solutions at room temperature. We demonstrate our approach using hydrogels made from serum albumin, the most abundant protein in the blood plasma, which are synthesized in a cylindrical or flower shape. These gels are then programmed into a spring or a ring shape, respectively. The programming is performed through a marked change in stiffness (of up to 17-fold), induced by adsorption of Zn2+ or Cu2+ cations. We show that these programmed biomaterials can then morph back into their original shape, as the cations diffuse outside the hydrogel material. The approach demonstrated here represents an innovative strategy to program protein-based hydrogels to behave as actuators.

Climate change effects on tree growth from Romanian forest monitoring Level II plots

Forest health status is negatively influenced by climate change, air pollution and other disturbances. Extreme droughts reduce stand productivity, increase vulnerability to pests, and can even provoke mortality. Growth dynamics at tree and forest stand levels are considered the main indicators of stability and productivity in forest ecosystem structures. The main climate drivers for tree growth were identified using basal area increment (BAI) as a synthetic indicator. BAI chronologies were obtained from increment cores for 1960-2012 period. Six species were analysed in an attempt to identify their growth limiting factors. For the most important oak species in Romania, resilience components were computed in order to analyse their response to drought events. Moreover, growth dynamics were analysed for two species in mixed and monoculture forests. The results suggest that - in comparison to Picea abies and Fagus sylvatica, the sensitivity of Quercus spp. is much higher (0.3-0.47). Oakspecies situated in the most drought-affected areas are sensitive to rainfall values from the previous autumn, current spring, and early summer, with April monthly values having the most significant effect on BAI increment (r = 0.47*) The most sensitive species to drought is Q. cerris and Q. frainetto. Their BAI reduction during drought is >50% compared with the BAI values before the drought period. The recovery capacity of tree growth following drought events is lower for Q. robur and Q. petraea and higher for Q. cerris and Q. frainetto. The mixed forest stands have not showed a constant higher resistance to drought.

Radial growth-based assessment of sites effects on pedunculate and greyish oak in southern Romania

This study focuses on the climate growth drivers of Quercus robur L. (pedunculate oak) and Q. robur subsp. pedunculiflora K. Koch. (greyish oak), occurring in the biodiversity of three sites in southern Romania. We determined the degree of tolerance of the greyish oak, between the tardive and praecox varieties, to environmental stress, between 1951 and 2016. Total tree ring-width (RW), and earlywood (EW) and latewood (LW) measurements were subject of periodical and monthly climate-growth analysis. Our results revealed a moderate relationship between climate and tree-growth. A significant and positive relationship was observed between RW and previous growing season precipitation. Mean and minimum temperatures affected both positive and negative tree-rings during the growing season. We also observed that winter and spring represent key seasons for differentiating tardive from praecox varieties, affecting the intra-annual variability of ring-width, and EW and LW parameters. The correlation between the tree-ring measurements and daily climate data shows a clear offset of the starting growth between greyish oak varieties. A weak influence of stressors on tree-growth at the sites was observed through pointer year and resilience components analysis.

Testing three climate datasets for dendroclimatological studies of oaks in the South Carpathians

Three gridded datasets containing interpolated daily and monthly precipitation and temperature values over the past five decades were tested against four tree-ring chronologies of oak (Quercus robur and Q. petraea). The objective of this research was to investigate the climate-growth relationship and whether the Pearson's product-moment correlation coefficients differ significantly if mean monthly precipitation and temperature data from the different climate databases, CRU, E-OBS and ROCADA are used. To this end, we selected two representative oak ecosystems in the South Carpathians, Romania, and analysed earlywood, latewood and tree-ring widths. Climate time series trends for the South Carpathians coldest, warmest days and wettest days were assessed with datasets from E-OBS and ROCADA, which differed in the density of their meteorological station network and their interpolation methods. The observed climatic parameters showed changes towards wetter conditions after the mid-1980s. For 1961-2013, E-OBS underestimated the mean daily temperature and daily precipitation compared with ROCADA. The results showed that higher extreme temperatures from January-March affected earlywood growth. In the investigated study region, latewood formation seemed to be affected by water availability mainly in May. Periods of drought associated with higher temperatures have limiting effects on tree growth, but these events are captured in different ways by each climate database analysed. Similarly, the results showed the discrepancy among datasets for earlywood and climate relationships. The results emphasize the importance of proper selection of climate data for assessing climate-tree growth relationships. For future dendroclimatological and dendroecological studies of oak in Romania, we recommend the ROCADA database, while E-OBS is recommended if an up-to-date climate dataset is needed.

Chemical unfolding of protein domains induces shape change in programmed protein hydrogels

Programmable behavior combined with tailored stiffness and tunable biomechanical response are key requirements for developing successful materials. However, these properties are still an elusive goal for protein-based biomaterials. Here, we use protein-polymer interactions to manipulate the stiffness of protein-based hydrogels made from bovine serum albumin (BSA) by using polyelectrolytes such as polyethyleneimine (PEI) and poly-L-lysine (PLL) at various concentrations. This approach confers protein-hydrogels with tunable wide-range stiffness, from ~10-64 kPa, without affecting the protein mechanics and nanostructure. We use the 6-fold increase in stiffness induced by PEI to program BSA hydrogels in various shapes. By utilizing the characteristic protein unfolding we can induce reversible shape-memory behavior of these composite materials using chemical denaturing solutions. The approach demonstrated here, based on protein engineering and polymer reinforcing, may enable the development and investigation of smart biomaterials and extend protein hydrogel capabilities beyond their conventional applications.

Toward stomatal-flux based forest protection against ozone: The MOTTLES approach

European standards for the protection of forests from ozone (O₃) are based on atmospheric exposure (AOT40) that is not always representative of O₃ effects since it is not a proxy of gas uptake through stomata (stomatal flux). MOTTLES "MOnitoring ozone injury for seTTing new critical LEvelS" is a LIFE project aimed at establishing a permanent network of forest sites based on active O₃ monitoring at remote areas at high and medium risk of O₃ injury, in order to define new standards based on stomatal flux, i.e. POD_Y (Phytotoxic Ozone Dose above a threshold Y of uptake). Based on the first year of data collected at MOTTLES sites, we describe the MOTTLES monitoring station, together with protocols and metric calculation methods. AOT40 and POD_Y, computed with different methods, are then compared and correlated with forest-health indicators (radial growth, crown defoliation, visible foliar O₃ injury). For the year 2017, the average AOT40 calculated according to the European Directive was even 5 times (on average 1.7 times) the European legislative standard for the protection of forests. When the metrics were calculated according to the European protocols (EU Directive 2008/50/EC or Modelling and Mapping Manual LTRAP Convention), the values were well correlated to those obtained on the basis of the real duration of the growing season (i.e. MOTTLES method) and were thus representative of the actual exposure/flux. AOT40 showed opposite direction relative to PODY. Visible foliar O₃ injury appeared as the best forest-health indicator for O₃ under field conditions and was more frequently detected at forest edge than inside the forest. The present work may help the set-up of further long-term forest monitoring sites dedicated to O₃ assessment in forests, especially because flux-based assessments are recommended as part of monitoring air pollution impacts on ecosystems in the revised EU National Emissions Ceilings Directive.

Forest vulnerability to extreme climatic events in Romanian Scots pine forests

In the last years, large-scale mass forest withering and dieback have been reported for Scots pine (Pinus sylvestris) across eastern Europe, particularly in Romania. In these regions, the climate models forecast an increase in intensity and frequency of extreme climate events such as drought. Taking into account these aspects, the exact identification of the influences of drought on the loss of radial growth and vitality in Scots pine stands becomes mandatory. To achieve this aim, we developed the first country-wide Scots pine dendrochronological network in Romania consisting of 34 chronologies of basal area increment (BAI), and including 1401 individual tree-ring width series. Romanian Scots pine forests were severely impacted by the 2000 and 2012 droughts. The high temperatures and low precipitation from April to August were the main climatic causes of radial-growth reduction and large-scale withering in some areas. By mapping post-drought growth resilience, we identified locations where resilience was low and could identify foci of future forest dieback and high tree mortality. The projected appearance of similar prolonged and severe droughts in the future will lead to the damage or local extinction of some Scots pine forests in Romania, regardless of their age, composition or spatial location. The elaboration of adaptive forest management strategies to the impact of climate changes, specifically designed for the Scots pine stands, is not possible without knowing and understanding these aspects.

Modeling Protein-Based Hydrogels under Force

Hydrogels made from structured polyprotein domains combine the properties of cross-linked polymers with the unfolding phase transition. The use of protein hydrogels as an ensemble approach to study the physics of domain unfolding is limited by the lack of scaling tools and by the complexity of the system. Here we propose a model to describe the biomechanical response of protein hydrogels based on the unfolding and extension of protein domains under force. Our model considers the contributions of the network dynamics of the molecules inside the gels, which have random cross-linking points and random topology. This model reproduces reported macroscopic viscoelastic effects and constitutes an important step toward using rheometry on protein hydrogels to scale down to the average mechanical response of protein molecules.

Climatically controlled reproduction drives interannual growth variability in a temperate tree species

Climatically controlled allocation to reproduction is a key mechanism by which climate influences tree growth and may explain lagged correlations between climate and growth. We used continent-wide datasets of tree-ring chronologies and annual reproductive effort in Fagus sylvatica from 1901 to 2015 to characterise relationships between climate, reproduction and growth. Results highlight that variable allocation to reproduction is a key factor for growth in this species, and that high reproductive effort ('mast years') is associated with stem growth reduction. Additionally, high reproductive effort is associated with previous summer temperature, creating lagged climate effects on growth. Consequently, understanding growth variability in forest ecosystems requires the incorporation of reproduction, which can be highly variable. Our results suggest that future response of growth dynamics to climate change in this species will be strongly influenced by the response of reproduction.

Force-Clamp Rheometry for Characterizing Protein-based Hydrogels

Here, we describe a force-clamp rheometry method to characterize the biomechanical properties of protein-based hydrogels. This method uses an analog proportional-integral-derivative (PID) system to apply controlled-force protocols on cylindrical protein-based hydrogel samples, which are tethered between a linear voice-coil motor and a force transducer. During operation, the PID system adjusts the extension of the hydrogel sample to follow a predefined force protocol by minimizing the difference between the measured and set-point forces. This unique approach to protein-based hydrogels enables the tethering of extremely low-volume hydrogel samples (< 5 µL) with different protein concentrations. Under force-ramp protocols, where the applied stress increases and decreases linearly with time, the system enables the study of the elasticity and hysteresis behaviors associated with the (un)folding of proteins and the measurement of standard elastic and viscoelastic parameters. Under constant-force, where the force pulse has a step-like shape, the elastic response, due to the change in force, is decoupled from the viscoelastic response, which comes from protein domain unfolding and refolding. Due to its low-volume sample and versatility in applying various mechanical perturbations, force-clamp rheometry is optimized to investigate the mechanical response of proteins under force using a bulk approach.

Contrasting effects of environmental change on the radial growth of co-occurring beech and fir trees across Europe

Under predicted climate change, native silver fir (Abies alba) and European beech (Fagus sylvatica) are the most likely replacement species for the Norway spruce (Picea abies) monocultures planted across large parts of continental Europe. Our current understanding of the adaptation potential of fir-beech mixed forests to climate change is limited because long-term responses of the two species to environmental changes have not yet been comprehensively quantified. We compiled and analysed tree-ring width (TRW) series from 2855 dominant, co-dominant, sub-dominant and suppressed fir and beech trees sampled in 17 managed and unmanaged mixed beech-fir forest sites across Continental Europe, including Bosnia and Herzegovina, Germany, Italy, Romania and Slovakia. Dendroecological techniques that combine various detrending methods were used to investigate variation in radial growth of co-occurring fir and beech trees. Coincidental with peak SO₂ emissions, the growth of silver fir declined between 1950 and 1980 at most sites, whereas beech growth increased during this period. Correspondent to a significant warming trend from 1990-2010, average beech growth declined, but silver fir growth increased. Long-term growth patterns and growth-climate sensitivity of fir and beech trees did not significantly differ between managed and unmanaged forests. Multi-decadal changes in the growth rate of all vertical tree classes were similar. In contrast to previous indications of limited drought susceptibility of beech mixed stands, this study suggests that the mixture of tree species in forest stands does not necessarily prevent growth depressions induced by long-term environmental change. Our results further imply that forest management does not necessarily alter their sensitivity to environmental changes.

Climate response of oak (Quercus spp.), an evidence of a bioclimatic boundary induced by the Carpathians

Tree-ring information and climate response data were applied to investigate the potential of the Carpathian Mountains to influence tree-growth patterns. Recent studies reveal the importance of constructing a dense spatial network of oak tree-ring chronologies in this area, which may be the key to linking the North Central European and East Mediterranean tree records. We establish sixteen oak (Quercus robur L.) and sessile oak (Quercus petraea (Matt.) Liebl.) site chronologies along a longitudinal gradient (from 22.47 to 26.58 E) in Northern Romania in an attempt to elucidate the impact of climate on oak growth. Even with differences generated by interspecific features, habitats and climatic regimes, a common macroclimatic marker for the NW and NE sites was established by comparing two groups of chronologies separated by the Carpathian chain. We found that precipitation in April (P4) and June (P6) were the primary climate factors that affected tree growth in the NW region. For the NE region, the temperature in January (T1) and March (T3) and precipitation in May (P5) were revealed to be the major limiting climatic factors. The spatial variability of the correlation coefficients indicates a decreasing trend in correlation intensity with precipitation from NW to NE, particularly during the current growing season (March-July). Oak trees from the NW and NE regions have adapted to different local climatic conditions and only respond uniformly to severe climate events (e.g., the 1904 drought). The higher occurrence of extreme years during the 20th century, particularly in the NE region, was in accordance with the rise of precipitation variability in the current growing season. The changes in the tree-growth pattern and climatic response of the chronologies of the studied sites in the NW and NE regions were linked to the local climates induced by the Carpathian Mountains.

Stand structure, recruitment and growth dynamics in mixed subalpine spruce and Swiss stone pine forests in the Eastern Carpathians

Natural subalpine forests are considered to be sensitive to climate change, and forest characteristics are assumed to reflect the prevalent disturbance regime. We hypothesize that stand history determines different stand structures. Based on large full inventory datasets (including tree biometric data, spatial coordinates, tree age, and basal area increment) we assessed the size structure, tree recruitment dynamics and radial growth patterns in three permanent plots along an altitudinal gradient in a mixed coniferous forest (Picea abies and Pinus cembra) in the Eastern Carpathians. Both discrete disturbances (large scale or small scale) and chronic disturbances (climate change) were identified as drivers of stand structure development in the studied plots. A stand replacing wind disturbance generated a unimodal bell-shaped size and age distribution for both species characterized by a sharp increase in post-disturbance recruitment. By contrast, small-scale wind-caused gaps led to a negative exponential diameter distribution for spruce and a left-asymmetric unimodal for pine. Climate-driven infilling processes in the upper subalpine forest were reflected as J-shaped size and age distributions for both species, but with pine predating spruce. The growth patterns for both species demonstrated an increased basal area increment since the early 1900s, with an emphasis in the last few decades, irrespective of stand history. Pine demonstrated a competitive advantage compared to spruce due to the higher growth rate and size at the same age. Recognition of combined discrete and chronic disturbances as drivers of the tree layer characteristics in a subalpine coniferous forest is essential in both stand history analyses and growth predictions.

Ozone exposure affects tree defoliation in a continental climate

Ground-level ozone (O₃) affects trees through visible leaf injury, accelerating leaf senescence, declining foliar chlorophyll content, photosynthetic activity, growth, carbon sequestration, predisposing to pests attack and a variety of other physiological effects. Tree crown defoliation is one of the most important parameters that is representative of forest health and vitality. Effects of air pollution on forests have been investigated through manipulative experiments that are not representative of the real environmental conditions observed in the field. In this work we investigated the role of O₃ concentration and other metrics (AOT40 and POD0) in affecting crown defoliation in temperate Romanian forests. The impacts of O₃ were estimated in combination with nitrogen pollutants, climatic factors and orographic conditions, by applying a non-linear modelling approach (Random Forest and Generalised Regression Models). Ozone concentration and AOT40 under Romanian conditions were more important than meteorological parameters in affecting crown defoliation. In these particular conditions, POD0 never exceeded the critical level suggested by previous literature for forest protection, and thus was not important in affecting crown defoliation.

Proteins Breaking Bad: A Free Energy Perspective

Protein aging may manifest as a mechanical disease that compromises tissue elasticity. As proved recently, while proteins respond to changes in force with an instantaneous elastic recoil followed by a folding contraction, aged proteins break bad, becoming unstructured polymers. Here, we explain this phenomenon in the context of a free energy model, predicting the changes in the folding landscape of proteins upon oxidative aging. Our findings validate that protein folding under force is constituted by two separable components, polymer properties and hydrophobic collapse, and demonstrate that the latter becomes irreversibly blocked by oxidative damage. We run Brownian dynamics simulations on the landscape of protein L octamer, reproducing all experimental observables, for a naive and damaged polyprotein. This work provides a unique tool to understand the evolving free energy landscape of elastic proteins upon physiological changes, opening new perspectives to predict age-related diseases in tissues.

Mechanical Deformation Accelerates Protein Ageing

A hallmark of tissue ageing is the irreversible oxidative modification of its proteins. We show that single proteins, kept unfolded and extended by a mechanical force, undergo accelerated ageing in times scales of minutes to days. A protein forced to be continuously unfolded completely loses its ability to contract by folding, becoming a labile polymer. Ageing rates vary among different proteins, but in all cases they lose their mechanical integrity. Random oxidative modification of cryptic side chains exposed by mechanical unfolding can be slowed by the addition of antioxidants such as ascorbic acid, or accelerated by oxidants. By contrast, proteins kept in the folded state and probed over week-long experiments show greatly reduced rates of ageing. We demonstrate a novel approach whereby protein ageing can be greatly accelerated: the constant unfolding of a protein for hours to days is equivalent to decades of exposure to free radicals under physiological conditions.

Multidomain proteins under force

Advancements in single-molecule force spectroscopy techniques such as atomic force microscopy and magnetic tweezers allow investigation of how domain folding under force can play a physiological role. Combining these techniques with protein engineering and HaloTag covalent attachment, we investigate similarities and differences between four model proteins: I10 and I91-two immunoglobulin-like domains from the muscle protein titin, and two α + β fold proteins-ubiquitin and protein L. These proteins show a different mechanical response and have unique extensions under force. Remarkably, when normalized to their contour length, the size of the unfolding and refolding steps as a function of force reduces to a single master curve. This curve can be described using standard models of polymer elasticity, explaining the entropic nature of the measured steps. We further validate our measurements with a simple energy landscape model, which combines protein folding with polymer physics and accounts for the complex nature of tandem domains under force. This model can become a useful tool to help in deciphering the complexity of multidomain proteins operating under force.

A HaloTag Anchored Ruler for Week-Long Studies of Protein Dynamics

Under physiological conditions, protein oxidation and misfolding occur with very low probability and on long times scales. Single-molecule techniques provide the ability to distinguish between properly folded and damaged proteins that are otherwise masked in ensemble measurements. However, at physiological conditions these rare events occur with a time constant of several hours, inaccessible to current single-molecule approaches. Here we present a magnetic-tweezers-based technique that allows, for the first time, the study of folding of single proteins during week-long experiments. This technique combines HaloTag anchoring, sub-micrometer positioning of magnets, and an active correction of the focal drift. Using this technique and protein L as a molecular template, we generate a magnet law by correlating the distance between the magnet and the measuring paramagnetic bead with unfolding/folding steps. We demonstrate that, using this magnet law, we can accurately measure the dynamics of proteins over a wide range of forces, with minimal dispersion from bead to bead. We also show that the force calibration remains invariant over week-long experiments applied to the same single proteins. The approach demonstrated in this Article opens new, exciting ways to examine proteins on the "human" time scale and establishes magnetic tweezers as a valuable technique to study low-probability events that occur during protein folding under force.

Old World megadroughts and pluvials during the Common Era

Climate model projections suggest widespread drying in the Mediterranean Basin and wetting in Fennoscandia in the coming decades largely as a consequence of greenhouse gas forcing of climate. To place these and other "Old World" climate projections into historical perspective based on more complete estimates of natural hydroclimatic variability, we have developed the "Old World Drought Atlas" (OWDA), a set of year-to-year maps of tree-ring reconstructed summer wetness and dryness over Europe and the Mediterranean Basin during the Common Era. The OWDA matches historical accounts of severe drought and wetness with a spatial completeness not previously available. In addition, megadroughts reconstructed over north-central Europe in the 11th and mid-15th centuries reinforce other evidence from North America and Asia that droughts were more severe, extensive, and prolonged over Northern Hemisphere land areas before the 20th century, with an inadequate understanding of their causes. The OWDA provides new data to determine the causes of Old World drought and wetness and attribute past climate variability to forced and/or internal variability.

The elastic free energy of a tandem modular protein under force

Recent studies have provided a theoretical framework for including entropic elasticity in the free energy landscape of proteins under mechanical force. Accounting for entropic elasticity using polymer physics models has helped explain the hopping behavior seen in single molecule experiments in the low force regime. Here, we expand on the construction of the free energy of a single protein domain under force proposed by Berkovich et al. to provide a free energy landscape for N tandem domains along a continuous polypeptide. Calculation of the free energy of individual domains followed by their concatenation provides a continuous free energy landscape whose curvature is dominated by the worm-like chain at forces below 20 pN. We have validated our free energy model using Brownian dynamics and reproduce key features of protein folding. This free energy model can predict the effects of changes in the elastic properties of a multidomain protein as a consequence of biological modifications such as phosphorylation or the formation of disulfide bonds. This work lays the foundations for the modeling of tissue elasticity, which is largely determined by the properties of tandem polyproteins.

Dynamics of equilibrium folding and unfolding transitions of titin immunoglobulin domain under constant forces

The mechanical stability of force-bearing proteins is crucial for their functions. However, slow transition rates of complex protein domains have made it challenging to investigate their equilibrium force-dependent structural transitions. Using ultra stable magnetic tweezers, we report the first equilibrium single-molecule force manipulation study of the classic titin I27 immunoglobulin domain. We found that individual I27 in a tandem repeat unfold/fold independently. We obtained the force-dependent free energy difference between unfolded and folded I27 and determined the critical force (∼5.4 pN) at which unfolding and folding have equal probability. We also determined the force-dependent free energy landscape of unfolding/folding transitions based on measurement of the free energy cost of unfolding. In addition to providing insights into the force-dependent structural transitions of titin I27, our results suggest that the conformations of titin immunoglobulin domains can be significantly altered during low force, long duration muscle stretching.

A novel strategy for utilizing voice coil servoactuators in tensile tests of low volume protein hydrogels

We present a novel tensile testing system optimized for the mechanical loading of microliter volume protein hydrogels. Our apparatus incorporates a voice coil servoactuator capable of carrying out fixed velocity extension-relaxation cycles as well as extension step protocols. The setup is equipped with an acrylic cuvette permitting day-long incubations in solution. To demonstrate the functionality of the device, we photochemically crosslinked polyproteins of the I91 immunoglobulin domain from the muscle protein titin to create solid hydrogels that recapitulate elastic properties of muscle. We present data from tensile tests of these low volume biomaterials that support protein unfolding as a main determinant of the elasticity of protein hydrogels. Our results demonstrate the potential use of protein hydrogels as biomaterials whose elastic properties dynamically respond to their environment.