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Mueller HM, Franzisky BL, Messerer M, Du B, Lux T, White PJ, Carpentier SC, Winkler JB, Schnitzler JP, El-Serehy HA, Al-Rasheid KAS, Al-Harbi N, Alfarraj S, Kudla J, Kangasjärvi J, Reichelt M, Mithöfer A, Mayer KFX, Rennenberg H, Ache P, Hedrich R, Geilfus CM. Integrative multi-omics analyses of date palm (Phoenix dactylifera) roots and leaves reveal how the halophyte land plant copes with sea water. Plant Genome 2024; 17:e20372. [PMID: 37518859 DOI: 10.1002/tpg2.20372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 06/28/2023] [Accepted: 07/02/2023] [Indexed: 08/01/2023]
Abstract
Date palm (Phoenix dactylifera L.) is able to grow and complete its life cycle while being rooted in highly saline soils. Which of the many well-known salt-tolerance strategies are combined to fine-tune this remarkable resilience is unknown. The precise location, whether in the shoot or the root, where these strategies are employed remains uncertain, leaving us unaware of how the various known salt-tolerance mechanisms are integrated to fine-tune this remarkable resilience. To address this shortcoming, we exposed date palm to a salt stress dose equivalent to seawater for up to 4 weeks and applied integrative multi-omics analyses followed by targeted metabolomics, hormone, and ion analyses. Integration of proteomic into transcriptomic data allowed a view beyond simple correlation, revealing a remarkably high degree of convergence between gene expression and protein abundance. This sheds a clear light on the acclimatization mechanisms employed, which depend on reprogramming of protein biosynthesis. For growth in highly saline habitats, date palm effectively combines various salt-tolerance mechanisms found in both halophytes and glycophytes: "avoidance" by efficient sodium and chloride exclusion at the roots, and "acclimation" by osmotic adjustment, reactive oxygen species scavenging in leaves, and remodeling of the ribosome-associated proteome in salt-exposed root cells. Combined efficiently as in P. dactylifera L., these sets of mechanisms seem to explain the palm's excellent salt stress tolerance.
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Affiliation(s)
- Heike M Mueller
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University Würzburg, Würzburg, Germany
| | - Bastian L Franzisky
- Department of Soil Science and Plant Nutrition, Hochschule Geisenheim University, Geisenheim, Germany
| | - Maxim Messerer
- Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany
| | - Baoguo Du
- College of Life Science and Biotechnology, Mianyang Normal University, Mianyang, China
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Thomas Lux
- Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany
| | | | - Sebastien Christian Carpentier
- Facility for SYstems BIOlogy based MAss Spectrometry, SYBIOMA, Proteomics Core Facility, KU Leuven, Leuven, Belgium
- Division of Crop Biotechnics, Laboratory of Tropical Crop Improvement, KU Leuven, Leuven, Belgium
| | - Jana Barbro Winkler
- Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Center Munich, Neuherberg, Germany
| | - Joerg-Peter Schnitzler
- Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Center Munich, Neuherberg, Germany
| | - Hamed A El-Serehy
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | | | - Naif Al-Harbi
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Saleh Alfarraj
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Jörg Kudla
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität Münster, Münster, Germany
| | - Jaakko Kangasjärvi
- Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland
| | - Michael Reichelt
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Axel Mithöfer
- Research Group Plant Defense Physiology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Klaus F X Mayer
- Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany
| | - Heinz Rennenberg
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Peter Ache
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University Würzburg, Würzburg, Germany
| | - Rainer Hedrich
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University Würzburg, Würzburg, Germany
| | - Christoph-Martin Geilfus
- Department of Soil Science and Plant Nutrition, Hochschule Geisenheim University, Geisenheim, Germany
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Li S, Yan L, Venuste M, Xu F, Shi L, White PJ, Wang X, Ding G. A critical review of plant adaptation to environmental boron stress: Uptake, utilization, and interplay with other abiotic and biotic factors. Chemosphere 2023; 338:139474. [PMID: 37442392 DOI: 10.1016/j.chemosphere.2023.139474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 07/09/2023] [Accepted: 07/10/2023] [Indexed: 07/15/2023]
Abstract
Boron (B) is an indispensable mineral nutrient for plants and is primarily taken up by roots mainly in the form of boric acid (H3BO3). Recently, research shows that B has a significant impact on plant growth and productivity due to its narrow range between deficiency and toxicity. Fertilization and other procedures to address B stress (deficiency and toxicity) in soils are generally expensive and time-consuming. Over the past 20 years, substantial studies have been conducted to investigate the mechanisms underlying B acquisition and the molecular regulation of B stress in plants. In this review, we discuss the effects of B stress on plant growth, physiology, and biochemistry, and finding on enhancing plant tolerance from the perspective of plant B uptake, transport, and utilization. We also refer to recent results demonstrating the interactions among B and other biological and abiotic factors, including nitrogen, phosphorus, aluminum, and microorganisms. Finally, emerging trends in this field are discussed.
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Affiliation(s)
- Shuang Li
- College of Resources and Environment/Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, 430070, Wuhan, China.
| | - Lei Yan
- Institute of Biomedical Engineering, College of Life Science, Qingdao University, Qingdao, 266071, China.
| | - Munyaneza Venuste
- College of Resources and Environment/Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, 430070, Wuhan, China.
| | - Fangsen Xu
- College of Resources and Environment/Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, 430070, Wuhan, China.
| | - Lei Shi
- College of Resources and Environment/Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, 430070, Wuhan, China.
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
| | - Xu Wang
- Institute of Quality Standard and Monitoring Technology for Agro-products of Guangdong Academy of Agricultural Sciences, China.
| | - Guangda Ding
- College of Resources and Environment/Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, 430070, Wuhan, China.
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Liu H, Pan Y, Cui R, Hammond JP, White PJ, Zhang Y, Zou M, Ding G, Wang S, Cai H, Xu F, Shi L. Integrating genome-wide association studies with selective sweep reveals genetic loci associated with tolerance to low phosphate availability in Brassica napus. Mol Breed 2023; 43:53. [PMID: 37333997 PMCID: PMC10275852 DOI: 10.1007/s11032-023-01399-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 05/31/2023] [Indexed: 06/20/2023]
Abstract
Oilseed rape (Brassica napus L.; B. napus) is an important oil crop worldwide. However, the genetic mechanisms of B. napus adaptations to low phosphate (P) stress are largely unknown. In this study, a genome-wide association study (GWAS) identified 68 SNPs significantly associated with seed yield (SY) under low P (LP) availability, and 7 SNPs significantly associated with phosphorus efficiency coefficient (PEC) in two trials. Among these SNPs, two, chrC07__39807169 and chrC09__14194798, were co-detected in two trials, and BnaC07.ARF9 and BnaC09.PHT1;2 were identified as candidate genes of them, respectively, by combining GWAS with quantitative reverse-transcription PCR (qRT-PCR). There were significant differences in the gene expression level of BnaC07.ARF9 and BnaC09.PHT1;2 between P-efficient and -inefficiency varieties at LP. SY_LP had a significant positive correlation with the gene expression level of both BnaC07.ARF9 and BnaC09.PHT1;2. BnaC07.ARF9 and BnaA01.PHR1 could directly bind the promoters of BnaA01.PHR1 and BnaC09.PHT1;2, respectively. Selective sweep analysis was conducted between ancient and derived B. napus, and detected 1280 putative selective signals. Within the selected region, a large number of genes related to P uptake, transport, and utilization were detected, such as purple acid phosphatase (PAP) family genes and phosphate transporter (PHT) family genes. These findings provide novel insights into the molecular targets for breeding P efficiency varieties in B. napus. Supplementary Information The online version contains supplementary material available at 10.1007/s11032-023-01399-9.
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Affiliation(s)
- Haijiang Liu
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yuan Pan
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Rui Cui
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - John P. Hammond
- School of Agriculture, Policy and Development, University of Reading, Reading, RG6 6AR UK
| | - Philip J. White
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- The James Hutton Institute, Dundee, UK
| | - Yuting Zhang
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
| | - Maoyan Zou
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Guangda Ding
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Sheliang Wang
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Hongmei Cai
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Fangsen Xu
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
| | - Lei Shi
- National Key Lab of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- Key Lab of Cultivated Land Conservation, Ministry of Agriculture and Rural Affairs/Microelement Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
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Faist H, Trognitz F, Antonielli L, Symanczik S, White PJ, Sessitsch A. Correction to: Potato root-associated microbiomes adapt to combined water and nutrient limitation and have a plant genotype-specific role for plant stress mitigation. Environ Microbiome 2023; 18:37. [PMID: 37098628 PMCID: PMC10131317 DOI: 10.1186/s40793-023-00492-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Affiliation(s)
- Hanna Faist
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Friederike Trognitz
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Livio Antonielli
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Sarah Symanczik
- Soil Science Department, Research Institute of Organic Agriculture (FiBL), Ackerstraße 113, 5070 Frick, Switzerland
| | | | - Angela Sessitsch
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
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Du B, Winkler JB, Ache P, White PJ, Dannenmann M, Alfarraj S, Albasher G, Schnitzler JP, Hedrich R, Rennenberg H. Differences of nitrogen metabolism in date palm (Phoenix dactylifera) seedlings subjected to water deprivation and salt exposure. Tree Physiol 2023; 43:587-596. [PMID: 36579827 DOI: 10.1093/treephys/tpac145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 11/18/2022] [Accepted: 12/11/2022] [Indexed: 05/03/2023]
Abstract
Drought and salt exposure are among the most prevalent and severe abiotic stressors causing serious agricultural yield losses, alone and in combination. Little is known about differences and similarities in the effects of these two stress factors on plant metabolic regulation, particularly on nitrogen metabolism. Here, we studied the effects of water deprivation and salt exposure on water relations and nitrogen metabolites in leaves and roots of date palm seedlings. Both, water deprivation and salt exposure had no significant effects on plant water content or stable carbon (C) and nitrogen (N) isotope signatures. Significant effects of water deprivation on total C and N concentrations were only observed in roots, i.e., decreased total C and increased total N concentrations. Whereas salt exposure initially decreased total C and increased total N concentrations significantly in roots, foliar total C concentration was increased upon prolonged exposure. Initially C/N ratios declined in roots of plants from both treatments and upon prolonged salt exposure also in the leaves. Neither treatment affected soluble protein and structural N concentrations in leaves or roots, but resulted in the accumulation of most amino acids, except for glutamate and tryptophan, which remained stable, and serine, which decreased, in roots. Accumulation of the most abundant amino acids, lysine and proline, was observed in roots under both treatments, but in leaves only upon salt exposure. This finding indicates a similar role of these amino acids as compatible solutes in the roots in response to salt und drought, but not in the leaves. Upon prolonged treatment, amino acid concentrations returned to levels found in unstressed plants in leaves of water deprived, but not salt exposed, plants. The present results show both water deprivation and salt exposure strongly impact N metabolism of date palm seedlings, but in a different manner in leaves and roots.
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Affiliation(s)
- Baoguo Du
- College of Life Science and Biotechnology, Mianyang Normal University, Mianxing Road West 166, Mianyang 621000, PRChina
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg 79110, Germany
| | - Jana Barbro Winkler
- Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Center Munich, Ingolstädter Landstraße 1, Neuherberg 85764, Germany
| | - Peter Ache
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, Julius-von-Sachs-Platz 2, Würzburg 97082, Germany
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Michael Dannenmann
- Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen 82467, Germany
| | - Saleh Alfarraj
- King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia
| | - Gadah Albasher
- King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia
| | - Joerg-Peter Schnitzler
- Research Unit Environmental Simulation (EUS), Institute of Biochemical Plant Pathology, Helmholtz Center Munich, Ingolstädter Landstraße 1, Neuherberg 85764, Germany
| | - Rainer Hedrich
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, Julius-von-Sachs-Platz 2, Würzburg 97082, Germany
| | - Heinz Rennenberg
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg 79110, Germany
- Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University, No. 2, Tiansheng Road, Beibei District, Chongqing 400715, PRChina
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Zhang K, Rengel Z, Zhang F, White PJ, Shen J. Rhizosphere engineering for sustainable crop production: entropy-based insights. Trends Plant Sci 2023; 28:390-398. [PMID: 36470795 DOI: 10.1016/j.tplants.2022.11.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 11/12/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
There is a growing interest in exploring interactions at root-soil interface in natural and agricultural ecosystems, but an entropy-based understanding of these dynamic rhizosphere processes is lacking. We have developed a new conceptual model of rhizosphere regulation by localized nutrient supply using thermodynamic entropy. Increased nutrient-use efficiency is achieved by rhizosphere management based on self-organization and minimized entropy via equilibrium attractors comprising (i) optimized root strategies for nutrient acquisition and (ii) improved information exchange related to root-soil-microbe interactions. The cascading effects through different hierarchical levels amplify the underlying processes in plant-soil system. We propose a strategy for manipulating rhizosphere dynamics and improving nutrient-use efficiency by localized nutrient supply with minimization of entropy to underpin sustainable food/feed/fiber production.
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Affiliation(s)
- Kai Zhang
- Centre for Resources, Environment and Food Security, Department of Plant Nutrition, Key Laboratory of Plant-Soil Interactions, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, China
| | - Zed Rengel
- Soil Science and Plant Nutrition, UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia; Institute for Adriatic Crops and Karst Reclamation, Split 21000, Croatia
| | - Fusuo Zhang
- Centre for Resources, Environment and Food Security, Department of Plant Nutrition, Key Laboratory of Plant-Soil Interactions, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, China
| | - Philip J White
- Ecological Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Jianbo Shen
- Centre for Resources, Environment and Food Security, Department of Plant Nutrition, Key Laboratory of Plant-Soil Interactions, National Academy of Agriculture Green Development, China Agricultural University, Beijing 100193, China.
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Faist H, Trognitz F, Antonielli L, Symanczik S, White PJ, Sessitsch A. Potato root-associated microbiomes adapt to combined water and nutrient limitation and have a plant genotype-specific role for plant stress mitigation. Environ Microbiome 2023; 18:18. [PMID: 36918963 PMCID: PMC10012461 DOI: 10.1186/s40793-023-00469-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND Due to climate change and reduced use of fertilizers combined stress scenarios are becoming increasingly frequent in crop production. In a field experiment we tested the effect of combined water and phosphorus limitation on the growth performance and plant traits of eight tetraploid and two diploid potato varieties as well as on root-associated microbiome diversity and functional potential. Microbiome and metagenome analysis targeted the diversity and potential functions of prokaryotes, fungi, plasmids, and bacteriophages and was linked to plant traits like tuber yield or timing of canopy closure. RESULTS The different potato genotypes responded differently to the combined stress and hosted distinct microbiota in the rhizosphere and the root endosphere. Proximity to the root, stress and potato genotype had significant effects on bacteria, whereas fungi were only mildly affected. To address the involvement of microbial functions, we investigated well and poorly performing potato genotypes (Stirling and Desirée, respectively) under stress conditions and executed a metagenome analysis of rhizosphere microbiomes subjected to stress and no stress conditions. Functions like ROS detoxification, aromatic amino acid and terpene metabolism were enriched and in synchrony with the metabolism of stressed plants. In Desirée, Pseudonocardiales had the genetic potential to take up assimilates produced in the fast-growing canopy and to reduce plant stress-sensing by degrading ethylene, but overall yield losses were high. In Stirling, Xanthomonadales had the genetic potential to reduce oxidative stress and to produce biofilms, potentially around roots. Biofilm formation could be involved in drought resilience and nutrient accessibility of Stirling and explain the recorded low yield losses. In the rhizosphere exposed to combined stress, the relative abundance of plasmids was reduced, and the diversity of phages was enriched. Moreover, mobile elements like plasmids and phages were affected by combined stresses in a genotype-specific manner. CONCLUSION Our study gives new insights into the interconnectedness of root-associated microbiota and plant stress responses in the field. Functional genes in the metagenome, phylogenetic composition and mobile elements play a role in potato stress adaption. In a poor and a well performing potato genotype grown under stress conditions, distinct functional genes pinpoint to a distinct stress sensing, water availability and compounds in the rhizospheres.
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Affiliation(s)
- Hanna Faist
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Friederike Trognitz
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Livio Antonielli
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Sarah Symanczik
- Soil Science Department, Research Institute of Organic Agriculture (FiBL), Ackerstraße 113, 5070 Frick, Switzerland
| | | | - Angela Sessitsch
- Bioresources Unit, AIT Austrian Institute of Technology, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
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Arab L, Hoshika Y, Paoletti E, White PJ, Dannenmann M, Mueller H, Ache P, Hedrich R, Alfarraj S, Albasher G, Rennenberg H. Chronic ozone exposure impairs the mineral nutrition of date palm (Phoenix dactylifera) seedlings. Sci Total Environ 2023; 862:160675. [PMID: 36481139 DOI: 10.1016/j.scitotenv.2022.160675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 10/25/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
Abstract
Chronic ozone (O3) exposure in the atmosphere preferentially disturbs metabolic processes in the roots rather than the shoot as a consequence of reduced photosynthesis and carbohydrate allocation from the leaves to the roots. The aim of the present study was to elucidate if mineral nutrition is also impaired by chronic O3 exposure. For this purpose, date palm (Phoenix dactylifera) plants were fumigated with ambient, 1.5 × ambient and 2 × ambient O3 in a free air controlled exposure (FACE) system for one growing season and concentrations of major nutrients were analyzed in leaves and roots. In addition, concentrations of C and N and their partitioning between different metabolic C and N pools were determined in both organs. The results showed that calcium (Ca), magnesium (Mg), iron (Fe), zinc (Zn), sodium (Na) and potassium (K) acquisition by roots was diminished by O3 exposure of the shoot. For Ca, Mg, Fe and Zn reduced uptake by the roots was combined with reduced allocation to the shoot, resulting in a decline of foliar concentrations; for Na and K, allocation to the shoot was maintained at the expense of the roots. Thus, elevated O3 impaired both mineral uptake by the roots and partitioning of minerals between roots and shoots, but in an element specific way. Thereby, elevated O3 affected roots and shoots differently already after one growing season. However, considerable changes in total C and N concentrations and their partitioning between different metabolic pools upon chronic O3 exposure were not observed in either leaves or roots, except for reduced foliar lignin concentrations at 2 × ambient O3. Significant differences in these parameters were shown between leaves and roots independent of O3 application. The physiological consequences of the effects of chronic O3 exposure on mineral acquisition and partitioning between leaves and roots are discussed.
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Affiliation(s)
- Leila Arab
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, 79110 Freiburg, Germany.
| | - Yasutomo Hoshika
- IRET-CNR, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy
| | - Elena Paoletti
- IRET-CNR, Via Madonna del Piano 10, 50019 Sesto Fiorentino, Firenze, Italy
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland, UK
| | - Michael Dannenmann
- Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Karlsruhe Institute of Technology (KIT), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen 82467, Germany
| | - Heike Mueller
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, 97082 Würzburg, Germany
| | - Peter Ache
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, 97082 Würzburg, Germany
| | - Rainer Hedrich
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, 97082 Würzburg, Germany
| | - Saleh Alfarraj
- King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia
| | - Ghada Albasher
- King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia
| | - Heinz Rennenberg
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, 79110 Freiburg, Germany; King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia; Center of Molecular Ecophysiology (CMEP), College of Resources and Environment, Southwest University No. 2, Tiansheng Road, Beibei District, 400715 Chongqing, PR China
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Han B, Wang C, Wu T, Yan J, Jiang A, Liu Y, Luo Y, Cai H, Ding G, Dong X, White PJ, Xu F, Wang S, Shi L. Identification of vacuolar phosphate influx transporters in Brassica napus. Plant Cell Environ 2022; 45:3338-3353. [PMID: 35986580 DOI: 10.1111/pce.14423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 08/17/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
Recent progress has shown that vacuolar Pi transporters (VPTs) are important for cellular Pi homoeostasis in Arabidopsis thaliana and Oryza sativa under fluctuating external Pi supply, but the identity and involvement of VPTs in cellular Pi homoeostasis in Brassica napus is poorly understood. Here, we identified two vacuolar Pi influx transporters B. napus, BnA09PHT5;1b and BnCnPHT5;1b, and uncovered their necessity for cellular Pi homoeostasis through functional analysis. Both Brassica proteins are homologs of Arabidopsis AtPHT5;1 with a similar sequence, structure, tonoplast localization, and VPT activity. Brassica pht5;1b double mutants had smaller shoots and larger shoot cellular Pi concentrations than wild-type B. napus, which contrasts with a previous study of the Arabidopsis pht5;1 mutant, suggesting that PHT5;1-VPTs play different roles in cellular Pi homoeostasis in seedlings of B. napus and A. thaliana. Disruption of BnPHT5;1b genes also caused Pi toxicity in floral organs, reduced seed yield and impacted seed traits, consistent with the proposed role of AtPHT5;1 in floral Pi homoeostasis in Arabidopsis. Taken together, our studies identified two vacuolar Pi influx transporters in B. napus and revealed the distinct and conserved roles of BnPHT5;1bs in cellular Pi homoeostasis in this plant species.
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Affiliation(s)
- Bei Han
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Chuang Wang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Tao Wu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Junjun Yan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Aosheng Jiang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Yu Liu
- College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Yu Luo
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Hongmei Cai
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Xu Dong
- CAS Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, National Center for Magnetic Resonance at Wuhan, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan, Hubei, China
| | - Philip J White
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- The James Hutton Institute, Invergowrie, Dundee, UK
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Sheliang Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
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10
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Zallio M, Grey T, Boland P, Kelly H, White PJ, O’Ferrall E. Online-based participatory design: A Case Study of Developing International Standards During a Pandemic. SDRJ 2022. [DOI: 10.4013/sdrj.2021.151.05] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Standards are essential instruments to ensure the safety, efficiency and quality of products, services, systems, processes, and environments. In pre-pandemic times, standard development process used to happen through in-person consultation and meetings, however, the COVID-19 pandemic disrupted the whole routine. A team of technical experts from the National Standards Authority of Ireland trialled an online-based participatory design process to support the review and development of a standard through stakeholder engagement. This article introduces the experience of developing a new standard by leveraging on emerging digital technologies, through stakeholder participation. This research offers a framework, outlining the steps undertaken during the process, to support future online-based standard development processes in co-operation with stakeholders, by respecting cultures, backgrounds, skills, and experiences.
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11
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Li Y, Yang X, Liu H, Wang W, Wang C, Ding G, Xu F, Wang S, Cai H, Hammond JP, White PJ, Shabala S, Yu M, Shi L. Local and systemic responses conferring acclimation of Brassica napus roots to low phosphorus conditions. J Exp Bot 2022; 73:4753-4777. [PMID: 35511123 DOI: 10.1093/jxb/erac177] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 04/27/2022] [Indexed: 06/14/2023]
Abstract
Due to the non-uniform distribution of inorganic phosphate (Pi) in the soil, plants modify their root architecture to improve acquisition of this nutrient. In this study, a split-root system was employed to assess the nature of local and systemic signals that modulate root architecture of Brassica napus grown with non-uniform Pi availability. Lateral root (LR) growth was regulated systemically by non-uniform Pi distribution, by increasing the second-order LR (2°LR) density in compartments with high Pi supply but decreasing it in compartments with low Pi availability. Transcriptomic profiling identified groups of genes regulated, both locally and systemically, by Pi starvation. The number of systemically induced genes was greater than the number of genes locally induced, and included genes related to abscisic acid (ABA) and jasmonic acid (JA) signalling pathways, reactive oxygen species (ROS) metabolism, sucrose, and starch metabolism. Physiological studies confirmed the involvement of ABA, JA, sugars, and ROS in the systemic Pi starvation response. Our results reveal the mechanistic basis of local and systemic responses of B. napus to Pi starvation and provide new insights into the molecular and physiological basis of root plasticity.
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Affiliation(s)
- Yalin Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Xinyu Yang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - HaiJiang Liu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Wei Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Chuang Wang
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Sheliang Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Hongmei Cai
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - John P Hammond
- School of Agriculture, Policy and Development, University of Reading, Reading, UK
| | - Philip J White
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
- The James Hutton Institute, Invergowrie, Dundee, UK
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Tas, Australia
- International Research Center for Environmental Membrane Biology & Department of Horticulture, Foshan University, Foshan, China
| | - Min Yu
- International Research Center for Environmental Membrane Biology & Department of Horticulture, Foshan University, Foshan, China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Center/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
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Guo Z, Wang X, Zhang X, Wang L, Wang R, Hui X, Wang S, Chen Y, White PJ, Shi M, Wang Z. Synchrotron X-ray Fluorescence Technique Identifies Contribution of Node Iron and Zinc Accumulations to the Grain of Wheat. J Agric Food Chem 2022; 70:9346-9355. [PMID: 35852475 DOI: 10.1021/acs.jafc.2c02561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Increasing iron (Fe) and zinc (Zn) concentrations in crop grains with high yield is an effective measure to ensure food supply and alleviate mineral malnutrition in humans. Micronutrient concentrations in grains depend on not only their availability in soils but also their uptake in roots and translocation to shoots and grains. In this three-year field study, we investigated genotypic variation in Fe and Zn uptake and translocation within six wheat cultivars and examined in detail Fe and Zn distributions in various tissues of two cultivars with similar high yield but different grain Fe and Zn concentrations using synchrotron micro-X-ray fluorescence. Results revealed that root Fe and Zn concentrations were 11 and 44% greater in high-nutrient (HN) than in low-nutrient (LN) concentration cultivar. Although both cultivars accumulated similar amounts of Fe in shoots, HN cultivar had greater accumulation of Fe in grain and greater accumulation of Zn in both shoots and grain. Grain Zn concentration was positively correlated with shoot Zn accumulation, and grain Fe concentration was positively correlated with the ability to translocate Fe from leaves/stem to grains. In the first nodes of shoots, HN cultivar had 482% greater Fe and 36% greater Zn concentrations in the enlarged vascular bundle (EVB) than LN cultivar. In top nodes, HN cultivar had 225 and 116% greater Fe and Zn concentrations in the transit vascular bundle and 77 and 71% greater in the EVB when compared to LN cultivar. HN cultivar also had a greater ability to allocate Fe and Zn to the grain than LN cultivar. In conclusion, HN cultivar had greater capacity of Fe and Zn acquirement by roots and translocation and partitioning from shoots into grains. Screening wheat cultivars for larger Fe and Zn concentrations in shoot nodes could be a novel strategy for breeding crops with greater grain Fe and Zn concentrations.
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Affiliation(s)
- Zikang Guo
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Xingshu Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Xuemei Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Li Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Runze Wang
- Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Xiaoli Hui
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Sen Wang
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Yinglong Chen
- The UWA Institute of Agriculture, and School of Agriculture & Environment, The University of Western Australia, Perth, Western Australia 6001, Australia
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Philip J White
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, U.K
| | - Mei Shi
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
- Ministerial and Provincial Co-Innovation Centre for Endemic Crops Production with High-quality and Efficiency in Loess Plateau, Taigu 030801, China
| | - Zhaohui Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, Shaanxi, China
- Key Laboratory of Plant Nutrition and Agri-environment in Northwest China, Ministry of Agriculture, College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, Shaanxi, China
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13
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Shen J, Luo Y, Tao Q, White PJ, Sun G, Li M, Luo J, He Y, Li B, Li Q, Xu Q, Cai Y, Li H, Wang C. The exacerbation of soil acidification correlates with structural and functional succession of the soil microbiome upon agricultural intensification. Sci Total Environ 2022; 828:154524. [PMID: 35288138 DOI: 10.1016/j.scitotenv.2022.154524] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 02/28/2022] [Accepted: 03/08/2022] [Indexed: 06/14/2023]
Abstract
Agricultural intensification driven by land-use changes has caused continuous and cumulative soil acidification (SA) throughout the global agroecosystem. Microorganisms mediate acid-generating reactions; however, the microbial mechanisms responsible for exacerbating SA feedback remain largely unknown. To determine the microbial community composition and putative function associated with SA, we conducted a metagenomic analysis of soils across a chronosequence that has elapsed since the conversion of rice-wheat (RW) to rice-vegetable (RV) rotations. Compared to RW rotations, soil pH decreased by 0.50 and 1.56 units (p < 0.05) in response to 10-year and 20-year RV rotations, respectively. Additionally, acid saturation ratios were increased by 7.3% and 36.2% (p < 0.05), respectively. The loss of microbial beta-diversity was a key element that contributed to the exacerbation of SA in the RV. Notably, the 20-year RV-enriched microbial taxa were more hydrogen (H+)-, aluminium (Al3+)-, and nitrate nitrogen (NO3--N) -dependent and contained more genera exhibiting dehydrogenation functions than did RW-enriched taxa. "M00115, M00151, M00417, and M00004" and "M00531 and M00135" that are the "proton-pumping" and "proton-consuming" gene modules, respectively, were linked to the massive recruitment of acid-dependent biomarkers in 20-year RV soils, particularly Rhodanobacter, Gemmatirosa, Sphingomonas, and Streptomyces. Collectively, soils in long-term RV rotations were highly acidified and acid-sensitive, as the enrichment of microbial dehydrogenation genes allowing for soil buffering capacity is more vulnerable to H+ loading and consequently promotes the colonization of more acid-tolerant and acidogenic microbes, and ultimately provide new clues for researchers to elucidate the interaction between SA and the soil microbiome.
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Affiliation(s)
- Jie Shen
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China; Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Youlin Luo
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qi Tao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Geng Sun
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Meng Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Jipeng Luo
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuting He
- Chengdu Popularization of Agricultural Technique Station, Chengdu 610041, China
| | - Bing Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiquan Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiang Xu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Yan Cai
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Huanxiu Li
- Fruit and Vegetable Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Changquan Wang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
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14
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Chen X, Wang Z, Muneer MA, Ma C, He D, White PJ, Li C, Zhang F. Short planks in the crop nutrient barrel theory of China are changing: Evidence from 15 crops in 13 provinces. Food Energy Secur 2022. [DOI: 10.1002/fes3.389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Xiaohui Chen
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant‐Soil Interactions, Ministry of Education China Agricultural University Beijing China
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Zheng Wang
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant‐Soil Interactions, Ministry of Education China Agricultural University Beijing China
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Muhammad Atif Muneer
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Changcheng Ma
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Dongdong He
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Philip J. White
- Distinguished Scientist Fellowship Program King Saud University Riyadh Saudi Arabia
- National Key Laboratory of Crop Genetic Improvement Huazhong Agricultural University Wuhan China
| | - Chunjian Li
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant‐Soil Interactions, Ministry of Education China Agricultural University Beijing China
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
| | - Fusuo Zhang
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant‐Soil Interactions, Ministry of Education China Agricultural University Beijing China
- International Magnesium Institute Fujian Agriculture and Forestry University Fuzhou China
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15
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Han Y, White PJ, Cheng L. Mechanisms for improving phosphorus utilization efficiency in plants. Ann Bot 2022; 129:247-258. [PMID: 34864840 PMCID: PMC8835619 DOI: 10.1093/aob/mcab145] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Accepted: 12/02/2021] [Indexed: 05/26/2023]
Abstract
BACKGROUND Limitation of plant productivity by phosphorus (P) supply is widespread and will probably increase in the future. Relatively large amounts of P fertilizer are applied to sustain crop growth and development and to achieve high yields. However, with increasing P application, plant P efficiency generally declines, which results in greater losses of P to the environment with detrimental consequences for ecosystems. SCOPE A strategy for reducing P input and environmental losses while maintaining or increasing plant performance is the development of crops that take up P effectively from the soil (P acquisition efficiency) or promote productivity per unit of P taken up (P utilization efficiency). In this review, we describe current research on P metabolism and transport and its relevance for improving P utilization efficiency. CONCLUSIONS Enhanced P utilization efficiency can be achieved by optimal partitioning of cellular P and distributing P effectively between tissues, allowing maximum growth and biomass of harvestable plant parts. Knowledge of the mechanisms involved could help design and breed crops with greater P utilization efficiency.
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Affiliation(s)
- Yang Han
- College of Resources and Environmental Sciences; National Academy of Agriculture Green Development; Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, PR China
| | - Philip J White
- Department of Ecological Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Lingyun Cheng
- College of Resources and Environmental Sciences; National Academy of Agriculture Green Development; Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, PR China
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16
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Wen Z, White PJ, Shen J, Lambers H. Linking root exudation to belowground economic traits for resource acquisition. New Phytol 2022; 233:1620-1635. [PMID: 34761404 DOI: 10.1111/nph.17854] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2021] [Accepted: 11/04/2021] [Indexed: 06/13/2023]
Abstract
The concept of a root economics space (RES) is increasingly adopted to explore root trait variation and belowground resource-acquisition strategies. Much progress has been made on interactions of root morphology and mycorrhizal symbioses. However, root exudation, with a significant carbon (C) cost (c. 5-21% of total photosynthetically fixed C) to enhance resource acquisition, remains a missing link in this RES. Here, we argue that incorporating root exudation into the structure of RES is key to a holistic understanding of soil nutrient acquisition. We highlight the different functional roles of root exudates in soil phosphorus (P) and nitrogen (N) acquisition. Thereafter, we synthesize emerging evidence that illustrates how root exudation interacts with root morphology and mycorrhizal symbioses at the level of species and individual plant and argue contrasting patterns in species evolved in P-impoverished vs N-limited environments. Finally, we propose a new conceptual framework, integrating three groups of root functional traits to better capture the complexity of belowground resource-acquisition strategies. Such a deeper understanding of the integrated and dynamic interactions of root morphology, root exudation, and mycorrhizal symbioses will provide valuable insights into the mechanisms underlying species coexistence and how to explore belowground interactions for sustainable managed systems.
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Affiliation(s)
- Zhihui Wen
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, 100193, Beijing, China
| | - Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Jianbo Shen
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, 100193, Beijing, China
| | - Hans Lambers
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, 100193, Beijing, China
- School of Biological Sciences and Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, Perth, WA, 6009, Australia
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17
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Neugebauer K, Broadley MR, El-Serehy HA, George TS, Graham NS, Thompson JA, Wright G, White PJ. Sodium hyperaccumulators in the Caryophyllales are characterized by both abnormally large shoot sodium concentrations and [Na]shoot/[Na]root quotients greater than unity. Ann Bot 2022; 129:65-78. [PMID: 34605859 PMCID: PMC8752394 DOI: 10.1093/aob/mcab126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 09/29/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND AIMS Some Caryophyllales species accumulate abnormally large shoot sodium (Na) concentrations in non-saline environments. It is not known whether this is a consequence of altered Na partitioning between roots and shoots. This paper tests the hypotheses (1) that Na concentrations in shoots ([Na]shoot) and in roots ([Na]root) are positively correlated among Caryophyllales, and (2) that shoot Na hyperaccumulation is correlated with [Na]shoot/[Na]root quotients. METHODS Fifty two genotypes, representing 45 Caryophyllales species and 4 species from other angiosperm orders, were grown hydroponically in a non-saline, complete nutrient solution. Concentrations of Na in shoots and in roots were determined using inductively coupled plasma mass spectrometry (ICP-MS). KEY RESULTS Sodium concentrations in shoots and roots were not correlated among Caryophyllales species with normal [Na]shoot, but were positively correlated among Caryophyllales species with abnormally large [Na]shoot. In addition, Caryophyllales species with abnormally large [Na]shoot had greater [Na]shoot/[Na]root than Caryophyllales species with normal [Na]shoot. CONCLUSIONS Sodium hyperaccumulators in the Caryophyllales are characterized by abnormally large [Na]shoot, a positive correlation between [Na]shoot and [Na]root, and [Na]shoot/[Na]root quotients greater than unity.
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Affiliation(s)
- Konrad Neugebauer
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, Dundee, UK
- Plant and Crop Sciences Division, University of Nottingham, Sutton Bonington, Loughborough, UK
| | - Martin R Broadley
- Plant and Crop Sciences Division, University of Nottingham, Sutton Bonington, Loughborough, UK
| | - Hamed A El-Serehy
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Timothy S George
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Neil S Graham
- Plant and Crop Sciences Division, University of Nottingham, Sutton Bonington, Loughborough, UK
| | | | - Gladys Wright
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, Dundee, UK
| | - Philip J White
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, Dundee, UK
- King Saud University, Riyadh, Saudi Arabia
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Finegan T, White PJ, Casey B. 53 HEALTHCARE PROVISION FOR OLDER PEOPLE IN KILKENNY THROUGH THE IMPLEMENTATION OF THE INTEGRATED CARE PROGRAMME FOR OLDER PEOPLE. Age Ageing 2021. [DOI: 10.1093/ageing/afab219.53] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023] Open
Abstract
Abstract
Background
An increase in the cost of healthcare provision is directly related to an ageing demographic nationally and internationally. It is, therefore, imperative that the system of health and social care provision for the older person is reformed. The Integrated Care Programme for Older People (ICPOP) envisages moving the locus of care from the acute system to primary and community health and social care. This research looks at the implementation and benefits of ICPOP from a clinicians and third sector organisations perspective.
Methods
Semi-structured interviews were conducted with six clinicians within the acute and community healthcare systems and, with two representatives from older persons third sector organisations. The interviews were held online through conferencing software and recorded. They were transcribed manually to gain a greater understanding of what was said and the context. Using a grounded theory approach, quotes were extracted, clustered together into categories or themes and, through theoretical sampling and comparison an in-depth understanding was gained, and theory developed.
Results
An organisational culture of innovative and collaborative practice is essential to the delivery of ICPOP as it leads to the empowerment of staff to develop integrated healthcare across disciplines and services. It is vital that funding for home support packages that provide both health and social care assistance with an adequate number of carers evenly distributed nationwide be provided. In addition, the ‘Living Well at Home’ piece of ICPOP with its important local community and social connectedness emphasis, needs to be sufficiently funded.
Conclusion
A culture of collaborative and innovated practice of healthcare provision exists in Kilkenny. Implementation of ICPOP is commiserate with appropriate funding for, and even distribution of, home care support packages and carers, as well as support for services that combat loneliness and social isolation enabling older people to age well at home.
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Affiliation(s)
- T Finegan
- Institute of Technology Carlow , Carlow, Ireland
| | - P J White
- Institute of Technology Carlow , Carlow, Ireland
| | - B Casey
- Institute of Technology Carlow , Carlow, Ireland
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19
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Silva VM, Nardeli AJ, Mendes NAC, Alcock TD, Rocha MDM, Putti FF, Wilson L, Young SD, Broadley MR, White PJ, Reis ARD. Application of sodium selenate to cowpea (Vigna unguiculata L.) increases shoot and grain Se partitioning with strong genotypic interactions. J Trace Elem Med Biol 2021; 67:126781. [PMID: 34015659 DOI: 10.1016/j.jtemb.2021.126781] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Revised: 04/13/2021] [Accepted: 05/10/2021] [Indexed: 11/16/2022]
Abstract
BACKGORUND Cowpea is a crop widely used in developing countries due its rusticity. Besides its rich genotypic variability, most breeding programs do not explore its potential to improve elements uptake. Selenium (Se) is a scarce element in most soils, resulting in its deficiency being common in human diets. This study aimed to evaluate the interaction between biofortification with Se and genotypic variation in cowpea, on the concentrations of Se in roots, leaves + stem and grains. METHODS Twenty-nine cowpea genotypes were grown in a greenhouse in the absence (control) and presence of Se (12.5 μg Se kg-1 soil) as sodium selenate, in fully randomized scheme. The plants were cultivated until grains harvest. The following variables were determined: roots dry weight (g), leaves + stems dry weight (g), grains dry weight (g), Se concentration (mg kg-1) in roots, leaves + stems and grains, and Se partitioning to shoots and grains. RESULTS Selenium application increased the Se concentration in roots, leaves + stems and grains in all genotypes. At least twofold variation in grain Se concentration was observed among genotypes. Selenium application did not impair biomass accumulation, including grain dry weight. Genotype "BRS Guariba" had the largest Se concentration in grains and leaves + stems. Genotype MNC04-795 F-158 had the largest partitioning of Se to shoots and grain, due to elevated dry weights of leaves + stems and grain, and high Se concentrations in these tissues. CONCLUSION This information might be valuable in future breeding programs to select for genotypes with better abilities to accumulate Se in grain to reduce widespread human Se undernutrition.
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Affiliation(s)
- Vinícius Martins Silva
- São Paulo State University (UNESP), Department of Crop Production, FCAV, Postal CEP 14884-900, Jaboticabal, SP, Brazil
| | - Ana Júlia Nardeli
- São Paulo State University (UNESP), Department of Crop Production, FCAV, Postal CEP 14884-900, Jaboticabal, SP, Brazil
| | - Nandhara Angelica Carvalho Mendes
- São Paulo State University (UNESP), Department of Biosystems Engineering, Rua Domingos da Costa Lopes 780, CEP17602-496, Tupã, SP, Brazil
| | - Thomas D Alcock
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | | | - Fernando Ferrari Putti
- São Paulo State University (UNESP), Department of Biosystems Engineering, Rua Domingos da Costa Lopes 780, CEP17602-496, Tupã, SP, Brazil
| | - Lolita Wilson
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Scott D Young
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Martin R Broadley
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China; Distinguished Scientist Fellowship Program, King Saud University, Riyadh, 11451, Saudi Arabia
| | - André Rodrigues Dos Reis
- São Paulo State University (UNESP), Department of Biosystems Engineering, Rua Domingos da Costa Lopes 780, CEP17602-496, Tupã, SP, Brazil.
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Luo Y, Shen J, Chen A, Tao Q, Li Q, White PJ, Li T, Li B, Chen L, Li H, Gao X, Xu Q, Wang C. Loss of organic carbon in suburban soil upon urbanization of Chengdu megacity, China. Sci Total Environ 2021; 785:147209. [PMID: 33932679 DOI: 10.1016/j.scitotenv.2021.147209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 04/11/2021] [Accepted: 04/13/2021] [Indexed: 05/17/2023]
Abstract
Urbanization is progressing rapidly. It can affect soils ecosystem services directly through land management and indirectly through changes in the socioeconomic environment, which eventually leads to an increase in emissions of greenhouse gases. Soil carbon (C) sequestration plays an important role in offsetting the anthropogenic C emissions. However, there is limited knowledge of how urbanization affects the soil C especially that in suburban. In this study, we studied changes in easily oxidizable organic C (EOC) and total organic C (TOC) of suburban soils (0-100 cm) in the rapid urbanising megacity Chengdu, China. The EOC stock and TOC stock decreased from the outer-suburb to the inner-suburb by 17.8-28.2% and 5.4-13.5%, respectively; particularly, the inner-suburb EOC decreased by 31.4-38.6% during the past 10 years. The quotient of EOC/TOC in the soil profile, reflecting the stability of soil C, declined from the outer-suburb (0.78) to the inner-suburb (0.20). Factors that influenced the EOC and TOC included the changes in economics (economic density, industrialization), farmland (cultivated area, farmland structure), urbanization (city size, population growth) and traffic flow. Among which, economic density growth was the primarily driver of the loss in TOC, explaining 31.6% of the variation in soil surface TOC and 16.0% of the variation in subsoil TOC; changes in farmland and urban expansion were the main factors contributing to the loss of subsoil EOC, with 40.4% explanatory ability. In addition, traffic flow also has contribution to the subsoil EOC loss. We concluded that the increasing soil C loss with decreasing distance from the city centre has a continuous contribution to C emission, and the C loss will persist until the suburbs are fully urbanized. The large losses of EOC and TOC caused by urbanization, and their contribution to global warming, necessitate their consideration in future appraisals of climate change and urban planning projects.
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Affiliation(s)
- Youlin Luo
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China; School of Environmental Science and Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Jie Shen
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Aifang Chen
- School of Environmental Science and Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Qi Tao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiquan Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Tingqiang Li
- Ministry of Education Key Laboratory of Environmental Remediation& Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China
| | - Bing Li
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Lin Chen
- Comprehensive Agricultural Service Centre of Datong Town, Qionglai 611542, China
| | - Huanxiu Li
- Institute of Pomology & Olericulture, Sichuan Agricultural University, Chengdu 611130, China
| | - Xuesong Gao
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China; College of Information Engineering, Sichuan Agricultural University, Yaan 625014, China
| | - Qiang Xu
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Changquan Wang
- College of Resources, Sichuan Agricultural University, Chengdu 611130, China.
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21
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Duan X, Wang X, Jin K, Wang W, Liu H, Liu L, Zhang Y, Hammond JP, White PJ, Ding G, Xu F, Shi L. Genetic Dissection of Root Angle of Brassica napus in Response to Low Phosphorus. Front Plant Sci 2021; 12:697872. [PMID: 34394150 PMCID: PMC8358456 DOI: 10.3389/fpls.2021.697872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 06/28/2021] [Indexed: 06/13/2023]
Abstract
Plant root angle determines the vertical and horizontal distribution of roots in the soil layer, which further influences the acquisition of phosphorus (P) in topsoil. Large genetic variability for the lateral root angle (root angle) was observed in a linkage mapping population (BnaTNDH population) and an association panel of Brassica napus whether at a low P (LP) or at an optimal P (OP). At LP, the average root angle of both populations became smaller. Nine quantitative trait loci (QTLs) at LP and three QTLs at OP for the root angle and five QTLs for the relative root angle (RRA) were identified by the linkage mapping analysis in the BnaTNDH population. Genome-wide association studies (GWASs) revealed 11 single-nucleotide polymorphisms (SNPs) significantly associated with the root angle at LP (LPRA). The interval of a QTL for LPRA on A06 (qLPRA-A06c) overlapped with the confidence region of the leading SNP (Bn-A06-p14439400) significantly associated with LPRA. In addition, a QTL cluster on chromosome C01 associated with the root angle and the primary root length (PRL) in the "pouch and wick" high-throughput phenotyping (HTP) system, the root P concentration in the agar system, and the seed yield in the field was identified in the BnaTNDH population at LP. A total of 87 genes on A06 and 192 genes on C01 were identified within the confidence interval, and 14 genes related to auxin asymmetric redistribution and root developmental process were predicted to be candidate genes. The identification and functional analyses of these genes affecting LPRA are of benefit to the cultivar selection with optimal root system architecture (RSA) under P deficiency in Brassica napus.
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Affiliation(s)
- Xianjie Duan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Xiaohua Wang
- College of Agriculture and Forestry Science, Linyi University, Linyi, China
| | - Kemo Jin
- Key Laboratory of Plant-Soil Interactions, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Ministry of Education, China Agricultural University, Beijing, China
| | - Wei Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Haijiang Liu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Ling Liu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Ying Zhang
- College of Resources and Environment, Hunan Agricultural University, Changsha, China
| | - John P. Hammond
- School of Agriculture, Policy and Development, University of Reading, Reading, United Kingdom
- Southern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia
| | - Philip J. White
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- The James Hutton Institute, Dundee, United Kingdom
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Microelement Research Centre, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
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22
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Alcock TD, Thomas CL, Ó Lochlainn S, Pongrac P, Wilson M, Moore C, Reyt G, Vogel-Mikuš K, Kelemen M, Hayden R, Wilson L, Stephenson P, Østergaard L, Irwin JA, Hammond JP, King GJ, Salt DE, Graham NS, White PJ, Broadley MR. Magnesium and calcium overaccumulate in the leaves of a schengen3 mutant of Brassica rapa. Plant Physiol 2021; 186:1616-1631. [PMID: 33831190 PMCID: PMC8260142 DOI: 10.1093/plphys/kiab150] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 03/12/2021] [Indexed: 05/04/2023]
Abstract
Magnesium (Mg) and calcium (Ca) are essential mineral nutrients poorly supplied in many human food systems. In grazing livestock, Mg and Ca deficiencies are costly welfare issues. Here, we report a Brassica rapa loss-of-function schengen3 (sgn3) mutant, braA.sgn3.a-1, which accumulates twice as much Mg and a third more Ca in its leaves. We mapped braA.sgn3.a to a single recessive locus using a forward ionomic screen of chemically mutagenized lines with subsequent backcrossing and linked-read sequencing of second back-crossed, second filial generation (BC2F2) segregants. Confocal imaging revealed a disrupted root endodermal diffusion barrier, consistent with SGN3 encoding a receptor-like kinase required for normal formation of Casparian strips, as reported in thale cress (Arabidopsis thaliana). Analysis of the spatial distribution of elements showed elevated extracellular Mg concentrations in leaves of braA.sgn3.a-1, hypothesized to result from preferential export of excessive Mg from cells to ensure suitable cellular concentrations. This work confirms a conserved role of SGN3 in controlling nutrient homeostasis in B. rapa, and reveals mechanisms by which plants are able to deal with perturbed shoot element concentrations resulting from a "leaky" root endodermal barrier. Characterization of variation in leaf Mg and Ca accumulation across a mutagenized population of B. rapa shows promise for using such populations in breeding programs to increase edible concentrations of essential human and animal nutrients.
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Affiliation(s)
- Thomas D Alcock
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Future Food Beacon of Excellence, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- School of Life Sciences, Technical University of Munich, 85354 Freising, Germany
| | - Catherine L Thomas
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Department of Sustainable Agriculture Sciences, Rothamsted Research, West Common, Hertfordshire AL5 2JQ, UK
| | - Seosamh Ó Lochlainn
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Paula Pongrac
- Jožef Stefan Institute, 1000 Ljubljana, Slovenia
- Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia
| | - Michael Wilson
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Future Food Beacon of Excellence, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Christopher Moore
- Future Food Beacon of Excellence, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- School of Life Sciences, University of Nottingham, Queen’s Medical Centre, Nottingham NG7 2UH, UK
| | - Guilhem Reyt
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Future Food Beacon of Excellence, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Katarina Vogel-Mikuš
- Jožef Stefan Institute, 1000 Ljubljana, Slovenia
- Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia
| | | | - Rory Hayden
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Lolita Wilson
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Pauline Stephenson
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Lars Østergaard
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Judith A Irwin
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - John P Hammond
- School of Agriculture, Policy and Development and the Centre for Food Security, University of Reading, Whiteknights, P.O. Box 237, Reading RG6 6AR, UK
- Southern Cross Plant Science, Southern Cross University, Lismore, New South Wales 2480, Australia
| | - Graham J King
- Southern Cross Plant Science, Southern Cross University, Lismore, New South Wales 2480, Australia
| | - David E Salt
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
- Future Food Beacon of Excellence, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Neil S Graham
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - Philip J White
- Ecological Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh 11451, Saudi Arabia
| | - Martin R Broadley
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
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Santos EF, Pongrac P, Reis AR, Rabêlo FHS, Azevedo RA, White PJ, Lavres J. Unravelling homeostasis effects of phosphorus and zinc nutrition by leaf photochemistry and metabolic adjustment in cotton plants. Sci Rep 2021; 11:13746. [PMID: 34215834 PMCID: PMC8253838 DOI: 10.1038/s41598-021-93396-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 06/21/2021] [Indexed: 02/06/2023] Open
Abstract
Phosphorus (P) and zinc (Zn) uptake and its physiological use in plants are interconnected and are tightly controlled. However, there is still conflicting information about the interactions of these two nutrients, thus a better understanding of nutritional homeostasis is needed. The objective of this work was to evaluate responses of photosynthesis parameters, P-Zn nutritional homeostasis and antioxidant metabolism to variation in the P × Zn supply of cotton (Gossypium hirsutum L.). Plants were grown in pots and watered with nutrient solution containing combinations of P and Zn supply. An excess of either P or Zn limited plant growth, reduced photosynthesis-related parameters, and antioxidant scavenging enzymes. Phosphorus uptake favoured photochemical dissipation of energy decreasing oxidative stress, notably on Zn-well-nourished plants. On the other hand, excessive P uptake reduces Zn-shoot concentration and decreasing carbonic anhydrase activity. Adequate Zn supply facilitated adaptation responses to P deficiency, upregulating acid phosphatase activity, whereas Zn and P excess were alleviated by increasing P and Zn supply, respectively. Collectively, the results showed that inter ionic effects of P and Zn uptake affected light use and CO2 assimilation rate on photosynthesis, activation of antioxidant metabolism, acid phosphatase and carbonic anhydrase activities, and plant growth-related responses to different extents.
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Affiliation(s)
- Elcio Ferreira Santos
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, 13416-000, Brazil
| | - Paula Pongrac
- Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 111, 1000, Ljubljana, Slovenia
- Jožef Stefan Institute, Jamova 39, 1000, Ljubljana, Slovenia
| | | | | | - Ricardo Antunes Azevedo
- College of Agriculture Luiz de Queiroz, University of São Paulo, Piracicaba, 13418-900, Brazil
| | - Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, 11451, Saudi Arabia
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, China
| | - José Lavres
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, 13416-000, Brazil.
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Silva VM, Putti FF, White PJ, Reis ARD. Phytic acid accumulation in plants: Biosynthesis pathway regulation and role in human diet. Plant Physiol Biochem 2021; 164:132-146. [PMID: 33991859 DOI: 10.1016/j.plaphy.2021.04.035] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Phytate or phytic acid (PA), is a phosphorus (P) containing compound generated by the stepwise phosphorylation of myo-inositol. It forms complexes with some nutrient cations, such as Ca, Fe and Zn, compromising their absorption and thus acting as an anti-nutrient in the digestive tract of humans and monogastric animals. Conversely, PAs are an important form of P storage in seeds, making up to 90% of total seed P. Phytates also play a role in germination and are related to the synthesis of abscisic acid and gibberellins, the hormones involved in seed germination. Decreasing PA content in plants is desirable for human dietary. Therefore, low phytic acid (lpa) mutants might present some negative pleiotropic effects, which could impair germination and seed viability. In the present study, we review current knowledge of the genes encoding enzymes that function in different stages of PA synthesis, from the first phosphorylation of myo-inositol to PA transport into seed reserve tissues, and the application of this knowledge to reduce PA concentrations in edible crops to enhance human diet. Finally, phylogenetic data for PA concentrations in different plant families and distributed across several countries under different environmental conditions are compiled. The results of the present study help explain the importance of PA accumulation in different plant families and the distribution of PA accumulation in different foods.
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Affiliation(s)
| | | | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
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25
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Xing K, Zhao M, Niinemets Ü, Niu S, Tian J, Jiang Y, Chen HYH, White PJ, Guo D, Ma Z. Relationships Between Leaf Carbon and Macronutrients Across Woody Species and Forest Ecosystems Highlight How Carbon Is Allocated to Leaf Structural Function. Front Plant Sci 2021; 12:674932. [PMID: 34177992 PMCID: PMC8226226 DOI: 10.3389/fpls.2021.674932] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 05/07/2021] [Indexed: 06/01/2023]
Abstract
Stoichiometry of leaf macronutrients can provide insight into the tradeoffs between leaf structural and metabolic investments. Structural carbon (C) in cell walls is contained in lignin and polysaccharides (cellulose, hemicellulose, and pectins). Much of leaf calcium (Ca) and a fraction of magnesium (Mg) were further bounded with cell wall pectins. The macronutrients phosphorus (P), potassium (K), and nitrogen (N) are primarily involved in cell metabolic functions. There is limited information on the functional interrelations among leaf C and macronutrients, and the functional dimensions characterizing the leaf structural and metabolic tradeoffs are not widely appreciated. We investigated the relationships between leaf C and macronutrient (N, P, K, Ca, Mg) concentrations in two widespread broad-leaved deciduous woody species Quercus wutaishanica (90 individuals) and Betula platyphylla (47 individuals), and further tested the generality of the observed relationships in 222 woody eudicots from 15 forest ecosystems. In a subsample of 20 broad-leaved species, we also analyzed the relationships among C, Ca, lignin, and pectin concentrations in leaf cell walls. We found a significant leaf C-Ca tradeoff operating within and across species and across ecosystems. This basic relationship was explained by variations in the share of cell wall lignin and pectin investments at the cell scale. The C-Ca tradeoffs were mainly driven by soil pH and mean annual temperature and precipitation, suggesting that leaves were more economically built with less C and more Ca as soil pH increased and at lower temperature and lower precipitation. However, we did not detect consistent patterns among C-N, and C-Mg at different levels of biological organization, suggesting substantial plasticity in N and Mg distribution among cell organelles and cell protoplast and cell wall. We observed two major axes of macronutrient differentiation: the cell-wall structural axis consisting of protein-free C and Ca and the protoplasm metabolic axis consisting of P and K, underscoring the decoupling of structural and metabolic elements inherently linked with cell wall from protoplasm investment strategies. We conclude that the tradeoffs between leaf C and Ca highlight how carbon is allocated to leaf structural function and suggest that this might indicate biogeochemical niche differentiation of species.
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Affiliation(s)
- Kaixiong Xing
- Key Laboratory of Ecosystem Network Observation and Modeling, Center for Forest Ecosystem Studies and Qianyanzhou Ecological Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Mingfei Zhao
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Faculty of Geographical Science, Beijing Normal University, Beijing, China
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
- Estonian Academy of Sciences, Tallinn, Estonia
| | - Shuli Niu
- Key Laboratory of Ecosystem Network Observation and Modeling, Center for Forest Ecosystem Studies and Qianyanzhou Ecological Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Jing Tian
- Key Laboratory of Plant-Soil Interactions, Ministry of Education, College of Resources and Environmental Sciences, China Agricultural University, National Academy of Agriculture Green Development, Beijing, China
| | - Yuan Jiang
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Faculty of Geographical Science, Beijing Normal University, Beijing, China
| | - Han Y. H. Chen
- College of Natural Resources Management, Lakehead University, Thunder Bay, ON, Canada
- College of Geographical Sciences, Fujian Normal University, Fujian, China
| | - Philip J. White
- The James Hutton Institute, Dundee, United Kingdom
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Dali Guo
- Key Laboratory of Ecosystem Network Observation and Modeling, Center for Forest Ecosystem Studies and Qianyanzhou Ecological Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
| | - Zeqing Ma
- Key Laboratory of Ecosystem Network Observation and Modeling, Center for Forest Ecosystem Studies and Qianyanzhou Ecological Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
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Silva VM, Nardeli AJ, Mendes NADC, Rocha MDM, Wilson L, Young SD, Broadley MR, White PJ, Reis ARD. Agronomic biofortification of cowpea with zinc: Variation in primary metabolism responses and grain nutritional quality among 29 diverse genotypes. Plant Physiol Biochem 2021; 162:378-387. [PMID: 33735742 DOI: 10.1016/j.plaphy.2021.02.020] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 02/18/2021] [Indexed: 05/16/2023]
Abstract
Dietary zinc (Zn) deficiency is widespread globally, and is particularly prevalent in low- and middle-income countries (LMICs). Cowpea (Vigna unguiculata (L.) Walp) is consumed widely in LMICs due to its high protein content, and has potential for use in agronomic biofortification strategies using Zn. This study aimed to evaluate the effect of Zn biofortification on grain nutritional quality of 29 cowpea genotypes. Zn application did not increase cowpea yield. In 11 genotypes sucrose concentration, in 12 genotypes total sugar concentration, and in 27 genotypes storage protein concentration increased in response to Zn supply. Fifteen genotypes had lower concentrations of amino acids under Zn application, which are likely to have been converted into storage proteins, mostly comprised of albumin. Phytic acid (PA) concentration and PA/Zn molar ratio were decreased under Zn application. Six genotypes increased shoot ureides concentration in response to Zn fertilization, indicating potential improvements to biological nitrogen fixation. This study provides valuable information on the potential for Zn application to increase cowpea grain nutritional quality by increasing Zn and soluble storage protein and decreasing PA concentration. These results might be useful for future breeding programs aiming to increase cowpea grain Zn concentrations through biofortification.
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Affiliation(s)
| | - Ana Júlia Nardeli
- São Paulo State University (UNESP), 14884-900, Jaboticabal, SP, Brazil
| | | | | | - Lolita Wilson
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Scott D Young
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Martin R Broadley
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Philip J White
- The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China
| | - André Rodrigues Dos Reis
- São Paulo State University (UNESP), 14884-900, Jaboticabal, SP, Brazil; São Paulo State University (UNESP), Rua Domingos da Costa Lopes 780, Jd. Itaipu, 17602-496, Tupã, SP, Brazil.
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27
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Cardini A, Pellegrino E, White PJ, Mazzolai B, Mascherpa MC, Ercoli L. Transcriptional Regulation of Genes Involved in Zinc Uptake, Sequestration and Redistribution Following Foliar Zinc Application to Medicago sativa. Plants (Basel) 2021; 10:476. [PMID: 33802484 PMCID: PMC7998959 DOI: 10.3390/plants10030476] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/20/2021] [Accepted: 02/25/2021] [Indexed: 11/19/2022]
Abstract
Zinc (Zn) is an essential micronutrient for plants and animals, and Zn deficiency is a widespread problem for agricultural production. Although many studies have been performed on biofortification of staple crops with Zn, few studies have focused on forages. Here, the molecular mechanisms of Zn transport in alfalfa (Medicago sativa L.) were investigated following foliar Zn applications. Zinc uptake and redistribution between shoot and root were determined following application of six Zn doses to leaves. Twelve putative genes encoding proteins involved in Zn transport (MsZIP1-7, MsZIF1, MsMTP1, MsYSL1, MsHMA4, and MsNAS1) were identified and changes in their expression following Zn application were quantified using newly designed RT-qPCR assays. These assays are the first designed specifically for alfalfa and resulted in being more efficient than the ones already available for Medicago truncatula (i.e., MtZIP1-7 and MtMTP1). Shoot and root Zn concentration was increased following foliar Zn applications ≥ 0.1 mg plant-1. Increased expression of MsZIP2, MsHMA4, and MsNAS1 in shoots, and of MsZIP2 and MsHMA4 in roots was observed with the largest Zn dose (10 mg Zn plant-1). By contrast, MsZIP3 was downregulated in shoots at Zn doses ≥ 0.1 mg plant-1. Three functional gene modules, involved in Zn uptake by cells, vacuolar Zn sequestration, and Zn redistribution within the plant, were identified. These results will inform genetic engineering strategies aimed at increasing the efficiency of crop Zn biofortification.
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Affiliation(s)
- Alessio Cardini
- Institute of Life Sciences, Scuola Superiore Sant’Anna, 56127 Pisa, Italy; (A.C.); (L.E.)
| | - Elisa Pellegrino
- Institute of Life Sciences, Scuola Superiore Sant’Anna, 56127 Pisa, Italy; (A.C.); (L.E.)
| | - Philip J. White
- Department of Ecological Science, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK;
| | - Barbara Mazzolai
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, 56025 Pisa, Italy;
| | - Marco C. Mascherpa
- Istituto di Chimica dei Composti Organo Metallici, National Research Council (CNR), 56124 Pisa, Italy;
| | - Laura Ercoli
- Institute of Life Sciences, Scuola Superiore Sant’Anna, 56127 Pisa, Italy; (A.C.); (L.E.)
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28
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Du B, Ma Y, Yáñez-Serrano AM, Arab L, Fasbender L, Alfarraj S, Albasher G, Hedrich R, White PJ, Werner C, Rennenberg H. Physiological responses of date palm (Phoenix dactylifera) seedlings to seawater and flooding. New Phytol 2021; 229:3318-3329. [PMID: 33259640 DOI: 10.1111/nph.17123] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Accepted: 11/22/2020] [Indexed: 06/12/2023]
Abstract
In their natural environment along coast lines, date palms are exposed to seawater inundation and, hence, combined stress by salinity and flooding. To elucidate the consequences of this combined stress on foliar gas exchange and metabolite abundances in leaves and roots, date palm seedlings were exposed to flooding with seawater and its major constituents under controlled conditions. Seawater flooding significantly reduced CO2 assimilation, transpiration and stomatal conductance, but did not affect isoprene emission. A similar effect was observed upon NaCl exposure. By contrast, flooding with distilled water or MgSO4 did not affect CO2 /H2 O gas exchange or stomatal conductance significantly, indicating that neither flooding itself, nor seawater sulfate, contributed greatly to stomatal closure. Seawater exposure increased Na and Cl contents in leaves and roots, but did not affect sulfate contents significantly. Metabolite analyses revealed reduced abundances of foliar compatible solutes, such as sugars and sugar alcohols, whereas nitrogen compounds accumulated in roots. Reduced transpiration upon seawater exposure may contribute to controlling the movement of toxic ions to leaves and, therefore, can be seen as a mechanism to cope with salinity. The present results indicate that date palm seedlings are tolerant towards seawater exposure to some extent, and highly tolerant to flooding.
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Affiliation(s)
- Baoguo Du
- College of Life Science and Biotechnology, Mianyang Normal University, Mianxing Road West 166, Mianyang, 621000, China
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg, 79110, Germany
| | - Yuhua Ma
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Ningda Road 251, Xining, 810016, China
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg, 79110, Germany
| | - Ana Maria Yáñez-Serrano
- Ecosystem Physiology, University of Freiburg, Georges-Köhler-Allee 53/54, Freiburg, 79110, Germany
| | - Leila Arab
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg, 79110, Germany
| | - Lukas Fasbender
- Ecosystem Physiology, University of Freiburg, Georges-Köhler-Allee 53/54, Freiburg, 79110, Germany
| | - Saleh Alfarraj
- King Saud University, PO Box 2455, Riyadh, 11451, Saudi Arabia
| | - Gadah Albasher
- King Saud University, PO Box 2455, Riyadh, 11451, Saudi Arabia
| | - Rainer Hedrich
- Institute for Molecular Plant Physiology and Biophysics, Biocenter, University of Würzburg, Würzburg, 97082, Germany
| | - Philip J White
- King Saud University, PO Box 2455, Riyadh, 11451, Saudi Arabia
- The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Christiane Werner
- Ecosystem Physiology, University of Freiburg, Georges-Köhler-Allee 53/54, Freiburg, 79110, Germany
| | - Heinz Rennenberg
- Chair of Tree Physiology, Institute of Forest Sciences, Albert-Ludwigs-Universität Freiburg, Georges-Köhler-Allee 53, Freiburg, 79110, Germany
- King Saud University, PO Box 2455, Riyadh, 11451, Saudi Arabia
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29
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Lux A, Kohanová J, White PJ. The secrets of calcicole species revealed. J Exp Bot 2021; 72:968-970. [PMID: 33626153 PMCID: PMC7904150 DOI: 10.1093/jxb/eraa555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
This article comments on: Kotula L, Clode PL, Ranathunge K, Lambers H. 2021. Role of roots in adaptation of soil-indifferent Proteaceae to calcareous soils in south-western Australia. Journal of Experimental Botany 72, 1490–1505.
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Affiliation(s)
- Alexander Lux
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Institute of Chemistry, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Jana Kohanová
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
| | - Philip J White
- Ecological Sciences Department, The James Hutton Institute, Invergowrie, UK
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Wang W, Zou J, White PJ, Ding G, Li Y, Xu F, Shi L. Identification of QTLs associated with potassium use efficiency and underlying candidate genes by whole-genome resequencing of two parental lines in Brassica napus. Genomics 2021; 113:755-768. [PMID: 33516850 DOI: 10.1016/j.ygeno.2021.01.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 10/20/2020] [Accepted: 01/26/2021] [Indexed: 10/22/2022]
Abstract
Breeding crops that acquire and/or utilize potassium (K) more effectively could reduce the use of K fertilizers. Sixteen traits affecting K use efficiency (KUE) at the seedling stage were investigated in a B. napus double haploid population grown at an optimal K supply (OK) and a low K supply (LK) in a hydroponic culture system. In total, 50 and 62 QTLs associated with these traits were identified at OK and LK, respectively. A total of 25 orthologues of 23 Arabidopsis genes regulating K transport were identified in the confidence intervals of nine QTLs impacting shoot dry weight at LK, and 22 of these showed variations in coding sequences and/or exhibited significant differences in mRNA abundances in roots at LK between the two parental lines. This study provided insights to the genetic basis of KUE in B. napus, which will accelerate the breeding of K-efficient rapeseed cultivars by marker-assisted selection.
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Affiliation(s)
- Wei Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China
| | - Jinsong Zou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China
| | - Philip J White
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK; Distinguished Scientist Fellowship Program, King Saud University, Riyadh 11451, Saudi Arabia
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China
| | - Yalin Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
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31
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Surey J, Stagg HR, Yates TA, Lipman M, White PJ, Charlett A, Muñoz L, Gosce L, Rangaka MX, Francis M, Hack V, Kunst H, Abubakar I. An open label, randomised controlled trial of rifapentine versus rifampicin based short course regimens for the treatment of latent tuberculosis in England: the HALT LTBI pilot study. BMC Infect Dis 2021; 21:90. [PMID: 33478428 PMCID: PMC7818935 DOI: 10.1186/s12879-021-05766-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 01/05/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Ending the global tuberculosis (TB) epidemic requires a focus on treating individuals with latent TB infection (LTBI) to prevent future cases. Promising trials of shorter regimens have shown them to be effective as preventative TB treatment, however there is a paucity of data on self-administered treatment completion rates. This pilot trial assessed treatment completion, adherence, safety and the feasibility of treating LTBI in the UK using a weekly rifapentine and isoniazid regimen versus daily rifampicin and isoniazid, both self-administered for 12 weeks. METHODS An open label, randomised, multi-site pilot trial was conducted in London, UK, between March 2015 and January 2017. Adults between 16 and 65 years with LTBI at two TB clinics who were eligible for and agreed to preventative therapy were consented and randomised 1:1 to receive either a weekly combination of rifapentine/isoniazid ('intervention') or a daily combination of rifampicin/isoniazid ('standard'), with both regimens taken for twelve weeks; treatment was self-administered in both arms. The primary outcome, completion of treatment, was self-reported, defined as taking more than 90% of prescribed doses and corroborated by pill counts and urine testing. Adverse events were recorded. RESULTS Fifty-two patients were successfully enrolled. In the intervention arm 21 of 27 patients completed treatment (77.8, 95% confidence interval [CI] 57.7-91.4), compared with 19 of 25 (76.0%, CI 54.9-90.6) in the standard of care arm. There was a similar adverse effect profile between the two arms. CONCLUSION In this pilot trial, treatment completion was comparable between the weekly rifapentine/isoniazid and the daily rifampicin/isoniazid regimens. Additionally, the adverse event profile was similar between the two arms. We conclude that it is safe and feasible to undertake a fully powered trial to determine whether self-administered weekly treatment is superior/non-inferior compared to current treatment. TRIAL REGISTRATION The trial was funded by the NIHR, UK and registered with ISRCTN ( 26/02/2013-No.04379941 ).
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Affiliation(s)
- J Surey
- Institute for Global Health, University College London, London, UK.
- Faculty of Medicine, Universidad Autónoma Madrid, Madrid, Spain.
| | - H R Stagg
- Usher Institute, University of Edinburgh, Edinburgh, UK
| | - T A Yates
- Institute for Global Health, University College London, London, UK
- Department of Infectious Disease, Faculty of Medicine, Imperial College London, London, W2 1NY, UK
| | - M Lipman
- UCL-TB and UCL Respiratory, UCL, London, Royal Free London National Health Service Foundation Trust, London, UK
| | - P J White
- National Infection Service, Public Health, England, UK
- Department of Infectious Disease Epidemiology, Imperial College School of Public Health, MRC Centre for Global Infectious Disease Analysis and NIHR Health Protection Research Unit in Modelling Methodology, London, UK
| | - A Charlett
- National Infection Service, Public Health, England, UK
| | - L Muñoz
- Clinical Sciences Department. School of Medicine, University of Barcelona and Internal Medicine Department, Parc Sanitari Sant Joan de Déu. Sant Boi, Barcelona, Spain
| | - L Gosce
- Institute for Global Health, University College London, London, UK
| | - M X Rangaka
- Institute for Global Health, University College London, London, UK
| | - M Francis
- Institute for Global Health, University College London, London, UK
| | - V Hack
- Institute for Global Health, University College London, London, UK
| | - H Kunst
- Blizard Institute, Queen Mary University of London, London, UK
- Department of Respiratory Medicine, Barts Health NHS Trust, London, UK
| | - I Abubakar
- Institute for Global Health, University College London, London, UK
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32
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Zhao Z, Wang Y, Shi J, Wang S, White PJ, Shi L, Xu F. Effect of balanced application of boron and phosphorus fertilizers on soil bacterial community, seed yield and phosphorus use efficiency of Brassica napus. Sci Total Environ 2021; 751:141644. [PMID: 32866830 DOI: 10.1016/j.scitotenv.2020.141644] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 08/09/2020] [Accepted: 08/09/2020] [Indexed: 06/11/2023]
Abstract
Rapeseed (Brassica napus L.) is extremely sensitive to both boron (B) and phosphorus (P) deficiencies. Application of chemical fertilizers is generally considered to be an effective agronomic practice to improve crop productivity, and it also affects soil bacterial community. However, there are few studies of the effects of balanced B and P fertilizer applications on crop yield and bacterial communities. In the present study, field experiments with five P application rates (0, 45, 90, 135 and 180 kg P2O5 ha-1) and four B application rates (0, 4.5, 9 and 18 kg Na2B4O7·5H2O ha-1) were conducted in 2016-2017 and 2017-2018 to investigate their effects on seed yield and P use efficiency (PUE) of B. napus. The smallest seed yields were obtained when B or P fertilizers were not applied (P90B0 or P0B9). Balanced B and P applications benefitted yields. The P45B4.5 treatment produced greater seed yield and PUE than the P45B18 treatment, and the P180B18 treatment produced greater seed yield and PUE than the P180B4.5 treatment. Sequencing of 16S rRNA genes revealed that the P90B9 treatment had greater soil bacterial diversity, and a different bacterial community composition, compared with the P90B0 or P0B9 treatments. Overall, our results underline the importance of balanced B and P nutrition for maximal seed yield of B. napus and the effects of B and P fertilizers on the soil bacterial community of B. napus.
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Affiliation(s)
- Zhe Zhao
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
| | - Youqiang Wang
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
| | - Jianqi Shi
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
| | - Sheliang Wang
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
| | - Philip J White
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China; The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK; Distinguished Scientist Fellowship Program, King Saud University, Riyadh 11451, Saudi Arabia.
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Microelement Research Centre, Huazhong Agricultural University, Wuhan 430070, China.
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33
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Black K, Tziboula‐Clarke A, White PJ, Iannetta PP, Walker G. Optimised processing of faba bean (
Vicia faba
L.) kernels as a brewing adjunct. J Inst Brew 2020. [DOI: 10.1002/jib.632] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Kirsty Black
- Division of Engineering and Food Science Abertay University Dundee DD1 1HG Scotland
- Ecological Sciences The James Hutton Institute Invergowrie Dundee DD2 5DA Scotland
- Arbikie Distillery, Arbikie Highland Estate Inverkeilor DD11 4UZ Scotland
| | | | - Philip J. White
- Ecological Sciences The James Hutton Institute Invergowrie Dundee DD2 5DA Scotland
| | - Pietro P.M. Iannetta
- Ecological Sciences The James Hutton Institute Invergowrie Dundee DD2 5DA Scotland
| | - Graeme Walker
- Division of Engineering and Food Science Abertay University Dundee DD1 1HG Scotland
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Wang X, Whalley WR, Miller AJ, White PJ, Zhang F, Shen J. Sustainable Cropping Requires Adaptation to a Heterogeneous Rhizosphere. Trends Plant Sci 2020; 25:1194-1202. [PMID: 32830043 DOI: 10.1016/j.tplants.2020.07.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 07/02/2020] [Accepted: 07/09/2020] [Indexed: 05/19/2023]
Abstract
Root-soil interactions in the rhizosphere are central to resource acquisition and crop production in agricultural systems. However, apart from studies in idealized experimental systems, rhizosphere processes in real agricultural soils in situ are largely uncharacterized. This limits the contribution of rhizosphere science to agriculture and the ongoing Green Revolution. Here, we argue that understanding plant responses to soil heterogeneity is key to understanding rhizosphere processes. We highlight rhizosphere sensing and root-induced soil modification in the context of heterogeneous soil structure, resource distribution, and root-soil interactions. A deeper understanding of the integrated and dynamic root-soil interactions in the heterogeneously structured rhizosphere could increase crop production and resource use efficiency towards sustainable agriculture.
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Affiliation(s)
- Xin Wang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Beijing 100193, PR China
| | | | | | - Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; Distinguished Scientist Fellowship Program, King Saud University, Riyadh 11451, Saudi Arabia
| | - Fusuo Zhang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Beijing 100193, PR China
| | - Jianbo Shen
- Department of Plant Nutrition, College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Beijing 100193, PR China.
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35
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Black K, Daute M, Tziboula-Clarke A, White PJ, Iannetta PPM, Walker G. Utilization of Low Nitrogen Barley for Production of Distilling Quality Malt. Journal of the American Society of Brewing Chemists 2020. [DOI: 10.1080/03610470.2020.1796090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Kirsty Black
- Division of Engineering and Food Science, Abertay University, Dundee, Scotland
- Ecological Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
- Arbikie Distilling Ltd, Inverkeilor, Arbroath, Scotland
| | - Martina Daute
- Division of Engineering and Food Science, Abertay University, Dundee, Scotland
| | | | - Philip J. White
- Ecological Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
| | | | - Graeme Walker
- Division of Engineering and Food Science, Abertay University, Dundee, Scotland
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36
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Pongrac P, Castillo-Michel H, Reyes-Herrera J, Hancock RD, Fischer S, Kelemen M, Thompson JA, Wright G, Likar M, Broadley MR, Vavpetič P, Pelicon P, White PJ. Effect of phosphorus supply on root traits of two Brassica oleracea L. genotypes. BMC Plant Biol 2020; 20:368. [PMID: 32758143 PMCID: PMC7404929 DOI: 10.1186/s12870-020-02558-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 07/19/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Phosphorus (P) deficiency limits crop production worldwide. Crops differ in their ability to acquire and utilise the P available. The aim of this study was to determine root traits (root exudates, root system architecture (RSA), tissue-specific allocation of P, and gene expression in roots) that (a) play a role in P-use efficiency and (b) contribute to large shoot zinc (Zn) concentration in Brassica oleracea. RESULTS Two B. oleracea accessions (var. sabellica C6, a kale, and var. italica F103, a broccoli) were grown in a hydroponic system or in a high-throughput-root phenotyping (HTRP) system where they received Low P (0.025 mM) or High P (0.25 mM) supply for 2 weeks. In hydroponics, root and shoot P and Zn concentrations were measured, root exudates were profiled using both Fourier-Transform-Infrared spectroscopy and gas-chromatography-mass spectrometry and previously published RNAseq data from roots was re-examined. In HTRP experiments, RSA (main and lateral root number and lateral root length) was assessed and the tissue-specific distribution of P was determined using micro-particle-induced-X-ray emission. The C6 accession had greater root and shoot biomass than the F103 accession, but the latter had a larger shoot P concentration than the C6 accession, regardless of the P supply in the hydroponic system. The F103 accession had a larger shoot Zn concentration than the C6 accession in the High P treatment. Although the F103 accession had a larger number of lateral roots, which were also longer than in the C6 accession, the C6 accession released a larger quantity and number of polar compounds than the F103 accession. A larger number of P-responsive genes were found in the Low P treatment in roots of the F103 accession than in roots of the C6 accession. Expression of genes linked with "phosphate starvation" was up-regulated, while those linked with iron homeostasis were down-regulated in the Low P treatment. CONCLUSIONS The results illustrate large within-species variability in root acclimatory responses to P supply in the composition of root exudates, RSA and gene expression, but not in P distribution in root cross sections, enabling P sufficiency in the two B. oleracea accessions studied.
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Affiliation(s)
- Paula Pongrac
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
- Jožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia.
| | | | | | - Robert D Hancock
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Sina Fischer
- Future Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Mitja Kelemen
- Jožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia
- Jožef Stefan International Postgraduate School, Jamova 39, SI-1000, Ljubljana, Slovenia
| | - Jacqueline A Thompson
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Gladys Wright
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
| | - Matevž Likar
- Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia
| | - Martin R Broadley
- Plant and Crop Sciences Division, University of Nottingham, Loughborough, LE12 5RD, UK
| | - Primož Vavpetič
- Jožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia
| | - Primož Pelicon
- Jožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia
| | - Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, 11451, Saudi Arabia
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, China
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Lowrey B, McWhirter DE, Proffitt KM, Monteith KL, Courtemanch AB, White PJ, Paterson JT, Dewey SR, Garrott RA. Individual variation creates diverse migratory portfolios in native populations of a mountain ungulate. Ecol Appl 2020; 30:e2106. [PMID: 32091631 DOI: 10.1002/eap.2106] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Revised: 01/10/2020] [Accepted: 01/29/2020] [Indexed: 06/10/2023]
Abstract
Ecological theory and empirical studies have demonstrated population-level demographic benefits resulting from a diversity of migratory behaviors with important implications for ecology, conservation, and evolution of migratory organisms. Nevertheless, evaluation of migratory portfolios (i.e., the variation in migratory behaviors across space and time among individuals within populations) has received relatively little attention in migratory ungulates, where research has focused largely on the dichotomous behaviors (e.g., resident and migrant) of partially migratory populations. Using GPS data from 361 female bighorn sheep (Ovis canadensis) across 17 (4 restored, 6 augmented, 7 native) populations in Montana and Wyoming, USA, we (1) characterized migratory portfolios based on behavioral and spatial migratory characteristics and (2) evaluated the relative influence of landscape attributes and management histories on migratory diversity. Native populations, which had been extant on the landscape for many generations, had more diverse migratory portfolios, higher behavioral switching rates, reduced seasonal range fidelity, and broad dispersion of individuals across summer and winter ranges. In contrast, restored populations with an abbreviated history on the landscape were largely non-migratory with a narrow portfolio of migratory behaviors, less behavioral switching, higher fidelity to seasonal ranges, and less dispersion on summer and winter ranges. Augmented populations were more variable and contained characteristics of both native and restored populations. Differences in migratory diversity among populations were associated with management histories (e.g., restored, augmented, or native). Landscape characteristics such as the duration and regularity of green-up, human landscape alterations, topography, and snow gradients were not strongly associated with migratory diversity. We suggest a two-pronged approach to restoring migratory portfolios in ungulates that first develops behavior-specific habitat models and then places individuals with known migratory behaviors into unoccupied areas in an effort to bolster migratory portfolios in restored populations, potentially with synergistic benefits associated with variation among individuals and resulting portfolio effects. Management efforts to restore diverse migratory portfolios may increase the abundance, resilience, and long-term viability of ungulate populations.
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Affiliation(s)
- B Lowrey
- Fish and Wildlife Ecology and Management Program, Department of Ecology, Montana State University, Bozeman, Montana, 59717, USA
| | - D E McWhirter
- Wyoming Game and Fish Department, Jackson, Wyoming, 83001, USA
| | - K M Proffitt
- Montana Department of Fish, Wildlife, and Parks, Bozeman, Montana, 59718, USA
| | - K L Monteith
- Haub School of Environment and Natural Resources, Wyoming Cooperative Fish and Wildlife Research Unit, Department of Zoology and Physiology, University of Wyoming, Laramie, Wyoming, 82072, USA
| | - A B Courtemanch
- Wyoming Game and Fish Department, Jackson, Wyoming, 83001, USA
| | - P J White
- Yellowstone Center for Resources, Yellowstone National Park, National Park Service, Mammoth, Wyoming, 82190, USA
| | - J T Paterson
- Fish and Wildlife Ecology and Management Program, Department of Ecology, Montana State University, Bozeman, Montana, 59717, USA
| | - S R Dewey
- Grand Teton National Park, National Park Service, PO Box 170, Moose, Wyoming, 83012, USA
| | - R A Garrott
- Fish and Wildlife Ecology and Management Program, Department of Ecology, Montana State University, Bozeman, Montana, 59717, USA
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Wang W, Ding G, White PJ, Wang M, Zou J, Xu F, Hammond JP, Shi L. Genetic dissection of the shoot and root ionomes of Brassica napus grown with contrasting phosphate supplies. Ann Bot 2020; 126:119-140. [PMID: 32221530 PMCID: PMC7304470 DOI: 10.1093/aob/mcaa055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2019] [Accepted: 03/26/2020] [Indexed: 05/09/2023]
Abstract
BACKGROUND AND AIMS Mineral elements have many essential and beneficial functions in plants. Phosphorus (P) deficiency can result in changes in the ionomes of plant organs. The aims of this study were to characterize the effects of P supply on the ionomes of shoots and roots, and to identify chromosomal quantitative trait loci (QTLs) for shoot and root ionomic traits, as well as those affecting the partitioning of mineral elements between shoot and root in Brassica napus grown with contrasting P supplies. METHODS Shoot and root concentrations of 11 mineral elements (B, Ca, Cu, Fe, K, Mg, Mn, Na, P, S and Zn) were investigated by inductively coupled plasma optical emission spectrometry (ICP-OES) in a Brassica napus double haploid population grown at an optimal (OP) and a low phosphorus supply (LP) in an agar system. Shoot, root and plant contents, and the partitioning of mineral elements between shoot and root were calculated. KEY RESULTS The tissue concentrations of B, Ca, Cu, K, Mg, Mn, Na, P and Zn were reduced by P starvation, while the concentration of Fe was increased by P starvation in the BnaTNDH population. A total of 133 and 123 QTLs for shoot and root ionomic traits were identified at OP and LP, respectively. A major QTL cluster on chromosome C07 had a significant effect on shoot Mg and S concentrations at LP and was narrowed down to a 2.1 Mb region using an advanced backcross population. CONCLUSIONS The tissue concentration and partitioning of each mineral element was affected differently by P starvation. There was a significant difference in mineral element composition between shoots and roots. Identification of the genes underlying these QTLs will enhance our understanding of processes affecting the uptake and partitioning of mineral elements in Brassica napus.
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Affiliation(s)
- Wei Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Guangda Ding
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - Philip J White
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
- The James Hutton Institute, Invergowrie, Dundee, UK
| | - Meng Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Jun Zou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Fangsen Xu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
| | - John P Hammond
- School of Agriculture, Policy and Development, University of Reading, Reading, UK
- Southern Cross Plant Science, Southern Cross University, Lismore, Australia
| | - Lei Shi
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Microelement Research Centre, Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan, China
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Neugebauer K, El-Serehy HA, George TS, McNicol JW, Moraes MF, Sorreano MCM, White PJ. The influence of phylogeny and ecology on root, shoot and plant ionomes of 14 native Brazilian species. Physiol Plant 2020; 168:790-802. [PMID: 31400248 DOI: 10.1111/ppl.13018] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 07/08/2019] [Accepted: 08/01/2019] [Indexed: 05/24/2023]
Abstract
The ionome is the elemental composition of a living organism, its tissues, cells or cell compartments. The ionomes of roots, stems and leaves of 14 native Brazilian forest species were characterised to examine the relationships between plant and organ ionomes and the phylogenetic and ecological affiliations of species. The null hypothesis that ionomes of Brazilian forest species and their organs do not differ was tested. Concentrations of mineral nutrients in roots, stems and leaves were determined for 14 Brazilian forest species, representing seven angiosperm orders, grown hydroponically in a complete nutrient solution. The 14 species could be differentiated by their ionomes and the partitioning of mineral nutrients between organs. The ionomic differences between the 14 species did not reflect their phylogenetic relationships or successional ecology. Differences between shoot ionomes and root ionomes were greater than differences in the ionome of an organ when compared among genotypes. In conclusion, differences in ionomes of species and their organs reflect a combination of ancient phylogenetic and recent environmental adaptations.
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Affiliation(s)
- Konrad Neugebauer
- Ecological Science Group, The James Hutton Institute, Dundee, DD2 5DA, UK
- Plant and Crop Sciences Division, University of Nottingham, Loughborough, LE12 5RD, UK
| | - Hamed A El-Serehy
- Zoology Department, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Timothy S George
- Ecological Science Group, The James Hutton Institute, Dundee, DD2 5DA, UK
| | | | - Milton F Moraes
- Graduate Program of Tropical Agriculture, Federal University of Mato Grosso, CEP78600-00, Barra do Garças, Mato Grosso, Brazil
| | | | - Philip J White
- Ecological Science Group, The James Hutton Institute, Dundee, DD2 5DA, UK
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, 11451, Saudi Arabia
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Reis HPG, de Queiroz Barcelos JP, Silva VM, Santos EF, Tavanti RFR, Putti FF, Young SD, Broadley MR, White PJ, Dos Reis AR. Agronomic biofortification with selenium impacts storage proteins in grains of upland rice. J Sci Food Agric 2020; 100:1990-1997. [PMID: 31849063 DOI: 10.1002/jsfa.10212] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 11/12/2019] [Accepted: 12/10/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND Selenium (Se) is an essential element for humans and animals. Rice is one of the most commonly consumed cereals in the world, so the agronomic biofortification of cereals with Se may be a good strategy to increase the levels of daily intake of Se by the population. This study evaluated the agronomic biofortification of rice genotypes with Se and its effects on grain nutritional quality. Five rates of Se (0, 10, 25, 50, and 100 g ha -1 ) were applied as selenate via the soil to three rice genotypes under field conditions. RESULTS Selenium concentrations in the leaves and polished grains increased linearly in response to Se application rates. A highly significant correlation was observed between the Se rates and the Se concentration in the leaves and grains, indicating high translocation of Se. The application of Se also increased the concentration of albumin, globulin, prolamin, and glutelin in polished grains. CONCLUSION Biofortifying rice genotypes using 25 g Se ha -1 could increase the average daily Se intake from 4.64 to 66 μg day-1 . Considering that the recommended daily intake of Se by adults is 55 μg day-1 , this agronomic strategy could contribute to alleviating widespread Se malnutrition. © 2019 Society of Chemical Industry.
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Affiliation(s)
| | | | | | | | | | | | - Scott D Young
- School of Biosciences, University of Nottingham, Leicestershire, UK
| | | | | | - André Rodrigues Dos Reis
- São Paulo State University (UNESP), Ilha Solteira, Brazil
- São Paulo State University (UNESP), Tupã, Brazil
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Pongrac P, Fischer S, Thompson JA, Wright G, White PJ. Early Responses of Brassica oleracea Roots to Zinc Supply Under Sufficient and Sub-Optimal Phosphorus Supply. Front Plant Sci 2020; 10:1645. [PMID: 31998335 PMCID: PMC6962232 DOI: 10.3389/fpls.2019.01645] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 11/21/2019] [Indexed: 05/24/2023]
Abstract
Shoot zinc (Zn) concentration in Brassica oleracea is affected by soil Zn and phosphorus (P) supply. Most problematic is the negative impact of P fertilizers on Zn concentrations in crops, which makes balancing yield and mineral quality challenging. To evaluate early molecular mechanisms involved in the accumulation of large shoot Zn concentrations regardless of the P supply, two B. oleracea accessions differing in root architecture and root exudates were grown hydroponically for two weeks with different combinations of P and Zn supply. Ionome profiling and deep RNA sequencing of roots revealed interactions of P and Zn in planta, without apparent phenotypic effects. In addition, increasing P supply did not reduce tissue Zn concentration. Substantial changes in gene expression in response to different P and/or Zn supplies in roots of both accessions ensured nutritionally sufficient P and Zn uptake. Numerous genes were differentially expressed after changing Zn or P supply and most of them were unique to only one accession, highlighting their different strategies in achieving nutrient sufficiency. Thus, different gene networks responded to the changing P and Zn supply in the two accessions. Additionally, enrichment analysis of gene ontology classes revealed that genes involved in lipid metabolism, response to starvation, and anion transport mechanisms were most responsive to differences in P and Zn supply in both accessions. The results agreed with previously studies demonstrating alterations in P and Zn transport and phospholipid metabolism in response to reduced P and Zn supply. It is anticipated that improved knowledge of genes responsive to P or Zn supply will help illuminate the roles in uptake and accumulation of P and Zn and might identify candidate genes for breeding high-yield-high-Zn brassicas.
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Affiliation(s)
- Paula Pongrac
- Ecological Science Group, The James Hutton Institute, Dundee, United Kingdom
- Low and Medium Energy Physics, Jožef Stefan Institute, Ljubljana, Slovenia
| | - Sina Fischer
- Future Food Beacon of Excellence and School of Biosciences, University of Nottingham, Loughborough, United Kingdom
| | | | - Gladys Wright
- Ecological Science Group, The James Hutton Institute, Dundee, United Kingdom
| | - Philip J. White
- Ecological Science Group, The James Hutton Institute, Dundee, United Kingdom
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, Saudi Arabia
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Wang X, Feng J, White PJ, Shen J, Cheng L. Heterogeneous phosphate supply influences maize lateral root proliferation by regulating auxin redistribution. Ann Bot 2020; 125:119-130. [PMID: 31560368 PMCID: PMC6948210 DOI: 10.1093/aob/mcz154] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 07/16/2019] [Accepted: 09/20/2019] [Indexed: 05/16/2023]
Abstract
BACKGROUND AND AIMS Roots take up phosphorus (P) as inorganic phosphate (Pi). Enhanced root proliferation in Pi-rich patches enables plants to capture the unevenly distributed Pi, but the underlying control of root proliferation remains largely unknown. Here, the role of auxin in this response was investigated in maize (Zea mays). METHODS A split-root, hydroponics system was employed to investigate root responses to Pi supply, with one (heterogeneous) or both (homogeneous) sides receiving 0 or 500 μm Pi. KEY RESULTS Maize roots proliferated in Pi-rich media, particularly with heterogeneous Pi supply. The second-order lateral root number was 3-fold greater in roots of plants receiving a heterogeneous Pi supply than in roots of plants with a homogeneous Pi supply. Root proliferation in a heterogeneous Pi supply was inhibited by the auxin transporter inhibitor 1-N-naphthylphthalamic acid (NPA). The proliferation of lateral roots was accompanied by an enhanced auxin response in the apical meristem and vascular tissues at the root tip, as demonstrated in a DR5::RFP marker line. CONCLUSIONS It is concluded that the response of maize root morphology to a heterogeneous Pi supply is modulated by local signals of Pi availability and systemic signals of plant P nutritional status, and is mediated by auxin redistribution.
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Affiliation(s)
- Xin Wang
- Department of Plant Nutrition, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Key Laboratory of Plant Nutrition, Ministry of Agriculture, Beijing , P. R. China
| | - Jingjing Feng
- Department of Plant Nutrition, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Key Laboratory of Plant Nutrition, Ministry of Agriculture, Beijing , P. R. China
| | - Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Jianbo Shen
- Department of Plant Nutrition, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Key Laboratory of Plant Nutrition, Ministry of Agriculture, Beijing , P. R. China
| | - Lingyun Cheng
- Department of Plant Nutrition, China Agricultural University, Key Laboratory of Plant-Soil Interactions, Ministry of Education, Key Laboratory of Plant Nutrition, Ministry of Agriculture, Beijing , P. R. China
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Hu W, Ren T, Meng F, Cong R, Li X, White PJ, Lu J. Leaf photosynthetic capacity is regulated by the interaction of nitrogen and potassium through coordination of CO 2 diffusion and carboxylation. Physiol Plant 2019; 167:418-432. [PMID: 30690727 DOI: 10.1111/ppl.12919] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Accepted: 12/18/2018] [Indexed: 06/09/2023]
Abstract
Combined application of nitrogen (N) and potassium (K) fertilizer could significantly enhance crop yield. Crop yield and photosynthesis are inseparable. However, the influence of N and K interaction on photosynthesis is still not fully understood. Field and hydroponic experiments were conducted to examine the effects of N and K interaction on leaf photosynthesis characteristics and to explore the mechanisms in the hydroponic experiment. CO2 conductance and carboxylation characteristic parameters of oilseed leaves were measured under different N and K supplies. Results indicated that detectable increases in leaf area, biomass and net photosynthetic rate (An ) were observed under optimal N and K supply in field and hydroponic experiments. The ratio of total CO2 diffusion conductance to the maximum carboxylation rate (gtot /Vcmax ) and An presented a linear-plateau relationship. Under insufficient N, increased K contributed to the CO2 transmission capacity and improved the proportion of N used for carboxylation, promoting gtot /Vcmax . However, the low Vcmax associated with N insufficiency limited the An . High N supply obviously accelerated Vcmax , yet K deficiency led to a reduction of gtot , which restricted Vcmax . Synchronous increases in N and K supplementation ensured the appropriate ratio of N to K content in leaves, which simultaneously facilitated gtot and Vcmax and preserved a gtot /Vcmax suitable for guaranteeing CO2 transmission and carboxylation coordination; the overall effect was increased An and leaf area. These results highlight the suitable N and K nutrients to coordinate CO2 diffusion and carboxylation, thereby enhancing photosynthetic capacity and area to obtain high crop yield.
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Affiliation(s)
- Wenshi Hu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
| | - Tao Ren
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
| | - Fanjin Meng
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
| | - Rihuan Cong
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
| | - Xiaokun Li
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
| | | | - Jianwei Lu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, Wuhan 430070, China
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White PJ. Root traits benefitting crop production in environments with limited water and nutrient availability. Ann Bot 2019; 124:mcz162. [PMID: 31599920 PMCID: PMC6881216 DOI: 10.1093/aob/mcz162] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 10/04/2019] [Indexed: 05/22/2023]
Abstract
BACKGROUND Breeding for advantageous root traits will play a fundamental role in improving the efficiency of water and nutrient acquisition, closing yield gaps, and underpinning the "Evergreen Revolution" that must match crop production with human demand. SCOPE This preface provides an overview of a Special Issue of Annals of Botany on "Root traits benefitting crop production in environments with limited water and nutrient availability". The first papers in the Special Issue examine how breeding for reduced shoot stature and greater harvest index during the Green Revolution affected root system architecture. It is observed that reduced plant height and root architecture are inherited independently and can be improved simultaneously to increase the acquisition and utilisation of carbon, water and mineral nutrients. These insights are followed by papers examining beneficial root traits for resource acquisition in environments with limited water or nutrient availability, such as deep rooting, control of hydraulic conductivity, formation of aerenchyma, proliferation of lateral roots and root hairs, foraging of nutrient-rich patches, manipulation of rhizosphere pH and the exudation of low molecular weight organic solutes. The Special Issue concludes with papers exploring the interactions of plant roots and microorganisms, highlighting the need for plants to control the symbiotic relationships between mycorrhizal fungi and rhizobia to achieve maximal growth, and the roles of plants and microbes in the modification and development of soils.
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Affiliation(s)
- Philip J White
- Ecological Science Group, The James Hutton Institute, Invergowrie, Dundee, UK
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, Saudi Arabia
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Silva VM, Boleta EH, Martins JT, Dos Santos FL, da Rocha Silva AC, Alcock TD, Wilson L, de Sá ME, Young SD, Broadley MR, White PJ, Dos Reis AR. Agronomic biofortification of cowpea with selenium: effects of selenate and selenite applications on selenium and phytate concentrations in seeds. J Sci Food Agric 2019; 99:5969-5983. [PMID: 31215030 DOI: 10.1002/jsfa.9872] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 06/05/2019] [Accepted: 06/13/2019] [Indexed: 05/23/2023]
Abstract
BACKGROUND Selenium (Se) is a nutrient for animals and humans, and is considered beneficial to higher plants. Selenium concentrations are low in most soils, which can result in a lack of Se in plants, and consequently in human diets. Phytic acid (PA) is the main storage form of phosphorus in seeds, and it is able to form insoluble complexes with essential minerals in the monogastric gut. This study aimed to establish optimal levels of Se application to cowpea, with the aim of increasing Se concentrations. The efficiency of agronomic biofortification was evaluated by the application of seven levels of Se (0, 2.5, 5, 10, 20, 40, and 60 g ha-1 ) from two sources (selenate and selenite) to the soil under field conditions in 2016 and 2017. RESULTS Application of Se as selenate led to greater plant Se concentrations than application as selenite in both leaves and grains. Assuming human cowpea consumption of 54.2 g day-1 , Se application of 20 g ha-1 in 2016 or 10 g ha-1 in 2017 as selenate would have provided a suitable daily intake of Se (between 20 and 55 μg day-1 ) for humans. Phytic acid showed no direct response to Se application. CONCLUSION Selenate provides greater phytoavailability than selenite. The application of 10 g Se ha-1 of selenate to cowpea plants could provide sufficient seed Se to increase daily human intake by 13-14 μg d-1 . © 2019 Society of Chemical Industry.
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Affiliation(s)
- Vinícius M Silva
- Depto. de Produção Vegetal, FCAV, UNESP - São Paulo State University, Jaboticabal, Brazil
| | | | | | | | | | - Thomas D Alcock
- School of Biosciences, The University of Nottingham, Sutton Bonington, UK
| | - Lolita Wilson
- School of Biosciences, The University of Nottingham, Sutton Bonington, UK
| | - Marco E de Sá
- UNESP - São Paulo State University, Ilha Solteira, Brazil
| | - Scott D Young
- School of Biosciences, The University of Nottingham, Sutton Bonington, UK
| | - Martin R Broadley
- School of Biosciences, The University of Nottingham, Sutton Bonington, UK
| | - Philip J White
- Ecological Sciences, The James Hutton Institute, Dundee, UK
| | - André R Dos Reis
- Depto. de Produção Vegetal, FCAV, UNESP - São Paulo State University, Jaboticabal, Brazil
- UNESP - São Paulo State University, Ilha Solteira, Brazil
- UNESP - São Paulo State University, Tupã, Brazil
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47
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Bokor B, Soukup M, Vaculík M, Vd’ačný P, Weidinger M, Lichtscheidl I, Vávrová S, Šoltys K, Sonah H, Deshmukh R, Bélanger RR, White PJ, El-Serehy HA, Lux A. Silicon Uptake and Localisation in Date Palm ( Phoenix dactylifera) - A Unique Association With Sclerenchyma. Front Plant Sci 2019; 10:988. [PMID: 31456812 PMCID: PMC6701203 DOI: 10.3389/fpls.2019.00988] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 07/12/2019] [Indexed: 05/20/2023]
Abstract
Date palm (Phoenix dactylifera) can accumulate as much as 1% silicon (Si), but not much is known about the mechanisms inherent to this process. Here, we investigated in detail the uptake, accumulation and distribution of Si in date palms, and the phylogeny of Si transporter genes in plants. We characterized the PdNIP2 transporter following heterologous expression in Xenopus oocytes and used qPCR to determine the relative expression of Si transporter genes. Silicon accumulation and distribution was investigated by light microscopy, scanning electron microscopy coupled with X-ray microanalysis and Raman microspectroscopy. We proved that PdNIP2-1 codes for a functional Si-permeable protein and demonstrated that PdNIP2 transporter genes were constitutively expressed in date palm. Silicon aggregates/phytoliths were found in specific stegmata cells present in roots, stems and leaves and their surfaces were composed of pure silica. Stegmata were organized on the outer surface of the sclerenchyma bundles or associated with the sclerenchyma of the vascular bundles. Phylogenetic analysis clustered NIP2 transporters of the Arecaceae in a sister position to those of the Poaceae. It is suggested, that Si uptake in date palm is mediated by a constitutively expressed Si influx transporter and accumulated as Si aggregates in stegmata cells abundant in the outer surface of the sclerenchyma bundles (fibers).
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Affiliation(s)
- Boris Bokor
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Comenius University Science Park, Bratislava, Slovakia
| | - Milan Soukup
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Institute of Chemistry, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Marek Vaculík
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Peter Vd’ačný
- Department of Zoology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
| | - Marieluise Weidinger
- Core Facility of Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, Austria
| | - Irene Lichtscheidl
- Core Facility of Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, Austria
| | - Silvia Vávrová
- Department of Molecular Biology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
| | - Katarína Šoltys
- Comenius University Science Park, Bratislava, Slovakia
- Department of Molecular Biology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
| | - Humira Sonah
- Department of Plant Science, Université Laval, Quebec, QC, Canada
| | - Rupesh Deshmukh
- Department of Plant Science, Université Laval, Quebec, QC, Canada
| | | | - Philip J. White
- The James Hutton Institute, Dundee, United Kingdom
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, Saudi Arabia
| | - Hamed A. El-Serehy
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Alexander Lux
- Department of Plant Physiology, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
- Comenius University Science Park, Bratislava, Slovakia
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48
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Kohl MT, Ruth TK, Metz MC, Stahler DR, Smith DW, White PJ, MacNulty DR. Do prey select for vacant hunting domains to minimize a multi-predator threat? Ecol Lett 2019; 22:1724-1733. [PMID: 31373137 DOI: 10.1111/ele.13319] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Revised: 02/13/2019] [Accepted: 05/09/2019] [Indexed: 01/02/2023]
Abstract
Many ecosystems contain sympatric predator species that hunt in different places and times. We tested whether this provides vacant hunting domains, places and times where and when predators are least active, that prey use to minimize threats from multiple predators simultaneously. We measured how northern Yellowstone elk (Cervus elaphus) responded to wolves (Canis lupus) and cougars (Puma concolor), and found that elk selected for areas outside the high-risk domains of both predators consistent with the vacant domain hypothesis. This enabled elk to avoid one predator without necessarily increasing its exposure to the other. Our results demonstrate how the diel cycle can serve as a key axis of the predator hunting domain that prey exploit to manage predation risk from multiple sources. We argue that a multi-predator, spatiotemporal framework is vital to understand the causes and consequences of prey spatial response to predation risk in environments with more than one predator.
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Affiliation(s)
- Michel T Kohl
- Department of Wildland Resources and Ecology Center, Utah State University, Logan, UT, 84322, USA
| | - Toni K Ruth
- Hornocker Wildlife Institute/Wildlife Conservation Society, Bozeman, MT, 59715, USA.,Salmon Valley Stewardship, Salmon, ID, 83467, USA
| | - Matthew C Metz
- Yellowstone Center for Resources, National Park Service, Yellowstone National Park, WY, 82190, USA.,Wildlife Biology Program, University of Montana, Missoula, MT, 59812, USA
| | - Daniel R Stahler
- Yellowstone Center for Resources, National Park Service, Yellowstone National Park, WY, 82190, USA
| | - Douglas W Smith
- Yellowstone Center for Resources, National Park Service, Yellowstone National Park, WY, 82190, USA
| | - P J White
- Yellowstone Center for Resources, National Park Service, Yellowstone National Park, WY, 82190, USA
| | - Daniel R MacNulty
- Department of Wildland Resources and Ecology Center, Utah State University, Logan, UT, 84322, USA
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49
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Santos EF, Pongrac P, Reis AR, White PJ, Lavres J. Phosphorus-zinc interactions in cotton: consequences for biomass production and nutrient-use efficiency in photosynthesis. Physiol Plant 2019; 166:996-1007. [PMID: 30515843 DOI: 10.1111/ppl.12867] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 10/10/2018] [Accepted: 10/27/2018] [Indexed: 05/23/2023]
Abstract
The fragmentary information on phosphorus (P) × zinc (Zn) interactions in plants warrants further study, particularly in plants known for their high P and Zn requirements, such as cotton (Gossypium hirsutum L.). The objective of this study was to investigate the effect of P × Zn interactions in a modern cultivar of cotton grown hydroponically. Biomass, mineral nutrition and photosynthetic parameters were monitored in plants receiving contrasting combinations of P and Zn supply. Root biomass, length and surface area were similar in plants with low P and/or low Zn supply to those in plants grown with high P and high Zn supply, reflecting an increased root/shoot biomass quotient when plants lack sufficient P or Zn for growth. Increasing P supply and reducing Zn supply increased shoot P concentrations, whilst shoot Zn concentrations were influenced largely by Zn supply. A balanced P × Zn supply (4 mM P × 4 μM Zn) enabled greatest biomass accumulation, while an imbalanced supply of these nutrients led to Zn deficiency, P toxicity or Zn toxicity. Net photosynthetic rate, stomatal conductance, transpiration rate and instantaneous carboxylation efficiency increased as P or Zn supply increased. Although increasing P supply reduced the P-use efficiency in photosynthesis (PUEP) and increasing Zn supply reduced the Zn-use efficiency in photosynthesis (ZnUEP), increasing Zn supply at a given P supply increased PUEP and increasing P supply at a given Zn supply increased ZnUEP. These results suggest that agricultural management strategies should seek for balanced mineral nutrition to optimize yields and resource-use efficiencies.
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Affiliation(s)
- Elcio Ferreira Santos
- Center for Nuclear Energy in Agriculture, University of São Paulo, 13416-000, Piracicaba, SP, Brazil
| | - Paula Pongrac
- Jožef Stefan Institute, SI-1000, Ljubljana, Slovenia
| | | | - Philip J White
- Ecological Science Group, The James Hutton Institute, Dundee, DD2 5DA, UK
- Distinguished Scientist Fellowship Program, King Saud University, Riyadh, 11451, Saudi Arabia
| | - José Lavres
- Center for Nuclear Energy in Agriculture, University of São Paulo, 13416-000, Piracicaba, SP, Brazil
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50
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Black K, Barnett A, Tziboula-Clarke A, White PJ, Iannetta PP, Walker G. Faba bean as a novel brewing adjunct: Consumer evaluation. J Inst Brew 2019. [DOI: 10.1002/jib.568] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kirsty Black
- Yeast Research Group; Abertay University; Dundee DD1 1HG UK
- Ecological Sciences; The James Hutton Institute; Invergowrie Dundee DD2 5DA UK
| | | | | | - Philip J. White
- Ecological Sciences; The James Hutton Institute; Invergowrie Dundee DD2 5DA UK
| | | | - Graeme Walker
- Yeast Research Group; Abertay University; Dundee DD1 1HG UK
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