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Maletzki M, Das GN, Hajkova K, Kovarova P, Perlik M, Sbaraglia C, Spitzer L, Bartonova AS, Vrba P, Fric ZF, Konvicka M. Wetland butterfly thriving in abandoned jungle: Neptis rivularis in the Czech Republic. THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2024; 111:34. [PMID: 38913166 DOI: 10.1007/s00114-024-01921-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2024] [Revised: 06/13/2024] [Accepted: 06/13/2024] [Indexed: 06/25/2024]
Abstract
With ongoing insect declines, species expanding in distribution and abundance deserve attention, as understanding their success may help design conservation strategies for less successful species. Common causes of these successes include warmer climates, novel resources, and exploiting land use change, including land abandonment. These factors affect the nymphalid butterfly Neptis rivularis, developing on Spiraea spp. shrubs and reaching the north-western limits of its trans-Palearctic distribution in Central Europe. We combined mark-recapture, behaviour analysis, and distribution modelling to study N. rivularis in wetlands of the Třeboňsko Protected Landscape (IUCN category V). The long-living adults (up to 4 weeks) spent a considerable amount of time searching for partners, ovipositing and nectaring at Spiraea shrubs, alternating this with stays in tree crowns, where they located cool shelters, spent nights, and presumably fed on honeydew. They formed high-density populations (310 adults/ha), exploiting high host plant abundance. They adhered to floodplains and to conditions of relatively mild winters. The ongoing Spiraea encroachment of abandoned alluvial grasslands is, thus, a transient situation, ultimately followed by forest encroachment. Rewilding the habitats by introducing native ungulates presents an opportunity to restore the disturbance regime of the sites. The increased resource supply combined with a warming climate has opened up temperate Europe to colonization by N. rivularis.
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Zielina M, Škoda J, Ivanová K, Dostál D, Juríčková L, Anthony Procházka D, Straka B, Doležal A. Exploring moral competence regression: a narrative approach in medical ethics education for medical students. BMC Med Ethics 2024; 25:73. [PMID: 38907238 PMCID: PMC11191321 DOI: 10.1186/s12910-024-01073-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 06/14/2024] [Indexed: 06/23/2024] Open
Abstract
BACKGROUND Studies from different countries report a stagnation or regression of moral competence in medical students between the first and the last year of their studies, and the value of various educational interventions remains uncertain. METHODS We used Moral Competence Test (MCT) to measure C-scores of moral competence to determine the change in the MCT C-scores between the first- and the fifth-year medical students from two medical schools in the Czech Republic in the academic year 2022/2023 and to analyze factors associated with the C-scores (observational study). In addition, for the first-year students, we compared the results of the MCT before and after an intervention in medical ethics curriculum (interventional study). We used a cross-sectional and descriptive design for the observational study. Students completed the MCT, consisting of two moral dilemmas (Worker´s Dilemma and Doctor´s Dilemma), the results measured by the C-score, which represents moral competence. RESULTS In total, 685 students participated in the observational study. Objective 1: based on the analysis of the C-score, we observed a decrease in moral competence between the first and the fifth-year medical students (p < .001). Objective 2: we did not observe a statistically significant effect of gender (p = .278), or self-rated religiosity (p = .163). Objective 3: in the interventional study, 440 students participated in the pretest and 422 students participated in the posttest. The test of statistical significance found no improvement in students' moral competence after the intervention (p = .253). CONCLUSION Medical students show a regression in moral competence during medical education; it was lower in medical students in their fifth year, compared to the first-year medical students without the effect of gender, or self-rated religiosity. Although educational intervention consisting of multiple tools of medical ethics teaching (PBL, CBL, KMDD and StorED) did not lead to increase in moral competence, the longitudinal effect of such intervention remains to be seen.
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Kozieł SM, Suder A, Chrzanowska M, Králík M, Malina RM. Growth status and age at peak height velocity among youth participants in several sports: the Cracow longitudinal study. BMC Sports Sci Med Rehabil 2024; 16:121. [PMID: 38812046 PMCID: PMC11134692 DOI: 10.1186/s13102-024-00905-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 05/13/2024] [Indexed: 05/31/2024]
Abstract
BACKGROUND Studies addressing age at peak height velocity (PHV) in longitudinal samples of participants in sports are relatively limited. PURPOSE To compare the growth status and estimated ages at PHV of longitudinal samples girls and boys active in sport with peers not active in sport, and to compare estimated ages at PHV among longitudinal samples of Polish youth active in sport. METHODS Records from the Cracow Longitudinal Study, which measured youth annually from 8 to 18 years, were screened to identify individuals regularly active in sport. Participants in athletics (22 girls, 10 boys), soccer (12 boys), and other team (6 girls, 7 boys) and individual (6 girls, 9 boys) sports were identified; 107 girls and 172 boys were not active in sport. Heights and weights of participants in sports and non-involved peers were compared. Longitudinal height records of individuals were fit with the SITAR model to estimate age at PHV. Ages at PHV of boys and girls active in sport and peers not active in sports were compared with sex-specific ANOVAs. RESULTS Ages at PHV of boys participating in athletics and soccer were similar to age at PHV of boys not active in sport, while ages at PHV of boys in other team sports (basketball, volleyball, handball) and individual sports (skiing, gymnastics, acrobatics) were, respectively, slightly earlier and later. Among girls, age at PHV of participants in team sports (basketball, netball) was earlier, while ages at PHV among participants in athletics and other individual sports (equestrian, acrobatics, shooting) were slightly later compared to non-athlete peers. CONCLUSION Ages at PHV varied among participants in different sports and were consistent with estimates in other longitudinal samples of Polish youth athletes.
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Planas-Iglesias J, Borko S, Swiatkowski J, Elias M, Havlasek M, Salamon O, Grakova E, Kunka A, Martinovic T, Damborsky J, Martinovic J, Bednar D. AggreProt: a web server for predicting and engineering aggregation prone regions in proteins. Nucleic Acids Res 2024:gkae420. [PMID: 38801076 DOI: 10.1093/nar/gkae420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 04/23/2024] [Accepted: 05/13/2024] [Indexed: 05/29/2024] Open
Abstract
Recombinant proteins play pivotal roles in numerous applications including industrial biocatalysts or therapeutics. Despite the recent progress in computational protein structure prediction, protein solubility and reduced aggregation propensity remain challenging attributes to design. Identification of aggregation-prone regions is essential for understanding misfolding diseases or designing efficient protein-based technologies, and as such has a great socio-economic impact. Here, we introduce AggreProt, a user-friendly webserver that automatically exploits an ensemble of deep neural networks to predict aggregation-prone regions (APRs) in protein sequences. Trained on experimentally evaluated hexapeptides, AggreProt compares to or outperforms state-of-the-art algorithms on two independent benchmark datasets. The server provides per-residue aggregation profiles along with information on solvent accessibility and transmembrane propensity within an intuitive interface with interactive sequence and structure viewers for comprehensive analysis. We demonstrate AggreProt efficacy in predicting differential aggregation behaviours in proteins on several use cases, which emphasize its potential for guiding protein engineering strategies towards decreased aggregation propensity and improved solubility. The webserver is freely available and accessible at https://loschmidt.chemi.muni.cz/aggreprot/.
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Kundrát V, Novák L, Bukvišová K, Zálešák J, Kolíbalová E, Rosentsveig R, Sreedhara M, Shalom H, Yadgarov L, Zak A, Kolíbal M, Tenne R. Mechanism of WS 2 Nanotube Formation Revealed by in Situ/ ex Situ Imaging. ACS NANO 2024; 18:12284-12294. [PMID: 38698720 PMCID: PMC11100282 DOI: 10.1021/acsnano.4c01150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 04/12/2024] [Accepted: 04/24/2024] [Indexed: 05/05/2024]
Abstract
Multiwall WS2 nanotubes have been synthesized from W18O49 nanowhiskers in substantial amounts for more than a decade. The established growth model is based on the "surface-inward" mechanism, whereby the high-temperature reaction with H2S starts on the nanowhisker surface, and the oxide-to-sulfide conversion progresses inward until hollow-core multiwall WS2 nanotubes are obtained. In the present work, an upgraded in situ SEM μReactor with H2 and H2S sources has been conceived to study the growth mechanism in detail. A hitherto undescribed growth mechanism, named "receding oxide core", which complements the "surface-inward" model, is observed and kinetically evaluated. Initially, the nanowhisker is passivated by several WS2 layers via the surface-inward reaction. At this point, the diffusion of H2S through the already existing outer layers becomes exceedingly sluggish, and the surface-inward reaction is slowed down appreciably. Subsequently, the tungsten suboxide core is anisotropically volatilized within the core close to its tips. The oxide vapors within the core lead to its partial out-diffusion, partially forming a cavity that expands with reaction time. Additionally, the oxide vapors react with the internalized H2S gas, forming fresh WS2 layers in the cavity of the nascent nanotube. The rate of the receding oxide core mode increases with temperatures above 900 °C. The growth of nanotubes in the atmospheric pressure flow reactor is carried out as well, showing that the proposed growth model (receding oxide core) is also relevant under regular reaction parameters. The current study comprehensively explains the WS2 nanotube growth mechanism, combining the known model with contemporary insight.
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Coufal R, Fijalkowski M, Adach K, Bu H, Karl CW, Mikysková E, Petrík S. Preparation and Investigation of High Surface Area Aerogels from Crosslinked Polypropylenes. Polymers (Basel) 2024; 16:1382. [PMID: 38794575 PMCID: PMC11125074 DOI: 10.3390/polym16101382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 04/29/2024] [Accepted: 04/30/2024] [Indexed: 05/26/2024] Open
Abstract
Polypropylene-based aerogels with high surface area have been developed for the first time. By chemical crosslinking of polypropylene with oligomeric capped-end amino compounds, followed by dissolution, thermally induced phase separation, and the supercritical CO2 drying process or freeze-drying method, the aerogels exhibit high specific surface areas up to 200 m2/g. Moreover, the silica-cage multi-amino compound was utilized in a similar vein for forming hybrid polypropylene aerogels. According to the SEM, the developed polypropylene-based aerogels exhibit highly porous morphology with micro-nanoscale structural features that can be controlled by processing conditions. Our simple and inexpensive synthetic strategy results in a low-cost, chemically resistant, and highly porous material that can be tailored according to end-use applications.
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Vítová M, Mezricky D. Microbial recovery of rare earth elements from various waste sources: a mini review with emphasis on microalgae. World J Microbiol Biotechnol 2024; 40:189. [PMID: 38702568 PMCID: PMC11068686 DOI: 10.1007/s11274-024-03974-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 04/01/2024] [Indexed: 05/06/2024]
Abstract
Rare Earth Elements (REEs) are indispensable in contemporary technologies, influencing various aspects of our daily lives and environmental solutions. The escalating demand for REEs has led to increased exploitation, resulting in the generation of diverse REE-bearing solid and liquid wastes. Recognizing the potential of these wastes as secondary sources of REEs, researchers are exploring microbial solutions for their recovery. This mini review provides insights into the utilization of microorganisms, with a particular focus on microalgae, for recovering REEs from sources such as ores, electronic waste, and industrial effluents. The review outlines the principles and distinctions of bioleaching, biosorption, and bioaccumulation, offering a comparative analysis of their potential and limitations. Specific examples of microorganisms demonstrating efficacy in REE recovery are highlighted, accompanied by successful methods, including advanced techniques for enhancing microbial strains to achieve higher REE recovery. Moreover, the review explores the environmental implications of bio-recovery, discussing the potential of these methods to mitigate REE pollution. By emphasizing microalgae as promising biotechnological candidates for REE recovery, this mini review not only presents current advances but also illuminates prospects in sustainable REE resource management and environmental remediation.
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Sandor R, Wagh SG, Kelterborn S, Großkinsky DK, Novak O, Olsen N, Paul B, Petřík I, Wu S, Hegemann P, Strnad M, Červený J, Roitsch T. Cytokinin-deficient Chlamydomonas reinhardtii CRISPR-Cas9 mutants show reduced ability to prime resistance of tobacco against bacterial infection. PHYSIOLOGIA PLANTARUM 2024; 176:e14311. [PMID: 38715208 DOI: 10.1111/ppl.14311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 04/09/2024] [Accepted: 04/11/2024] [Indexed: 05/12/2024]
Abstract
Although microalgae have only recently been recognized as part of the plant and soil microbiome, their application as biofertilizers has a tradition in sustainable crop production. Under consideration of their ability to produce the plant growth-stimulating hormone cytokinin (CK), known to also induce pathogen resistance, we have assessed the biocontrol ability of CK-producing microalgae. All pro- and eukaryotic CK-producing microalgae tested were able to enhance the tolerance of tobacco against Pseudomonas syringae pv. tabaci (PsT) infection. Since Chlamydomonas reinhardtii (Cre) proved to be the most efficient, we functionally characterized its biocontrol ability. We employed the CRISPR-Cas9 system to generate the first knockouts of CK biosynthetic genes in microalgae. Specifically, we targeted Cre Lonely Guy (LOG) and isopentenyltransferase (IPT) genes, the key genes of CK biosynthesis. While Cre wild-type exhibits a strong protection, the CK-deficient mutants have a reduced ability to induce plant defence. The degree of protection correlates with the CK levels, with the IPT mutants showing less protection than the LOG mutants. Gene expression analyses showed that Cre strongly stimulates tobacco resistance through defence gene priming. This study functionally verifies that Cre primes defence responses with CK, which contributes to the robustness of the effect. This work contributes to elucidate microalgae-mediated plant defence priming and identifies the role of CKs. In addition, these results underscore the potential of CK-producing microalgae as biologicals in agriculture by combining biofertilizer and biocontrol ability for sustainable and environment-friendly crop management.
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Vild O, Chudomelová M, Macek M, Kopecký M, Prach J, Petřík P, Halas P, Juříček M, Smyčková M, Šebesta J, Vojík M, Hédl R. Long-term shift towards shady and nutrient-rich habitats in Central European temperate forests. THE NEW PHYTOLOGIST 2024; 242:1018-1028. [PMID: 38436203 DOI: 10.1111/nph.19587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 01/23/2024] [Indexed: 03/05/2024]
Abstract
Biodiversity world-wide has been under increasing anthropogenic pressure in the past century. The long-term response of biotic communities has been tackled primarily by focusing on species richness, community composition and functionality. Equally important are shifts between entire communities and habitat types, which remain an unexplored level of biodiversity change. We have resurveyed > 2000 vegetation plots in temperate forests in central Europe to capture changes over an average of five decades. The plots were assigned to eight broad forest habitat types using an algorithmic classification system. We analysed transitions between the habitat types and interpreted the trend in terms of changes in environmental conditions. We identified a directional shift along the combined gradients of canopy openness and soil nutrients. Nutrient-poor open-canopy forest habitats have declined strongly in favour of fertile closed-canopy habitats. However, the shift was not uniform across the whole gradients. We conclude that the shifts in habitat types represent a century-long successional trend with significant consequences for forest biodiversity. Open forest habitats should be urgently targeted for plant diversity restoration through the implementation of active management. The approach presented here can be applied to other habitat types and at different spatio-temporal scales.
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Hýsková V, Bělonožníková K, Chmelík J, Hoffmeisterová H, Čeřovská N, Moravec T, Ryšlavá H. Potyviral Helper-Component Protease: Multifaced Functions and Interactions with Host Proteins. PLANTS (BASEL, SWITZERLAND) 2024; 13:1236. [PMID: 38732454 PMCID: PMC11085613 DOI: 10.3390/plants13091236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/25/2024] [Accepted: 04/26/2024] [Indexed: 05/13/2024]
Abstract
The best-characterized functional motifs of the potyviral Helper-Component protease (HC-Pro) responding for aphid transmission, RNA silencing suppression, movement, symptom development, and replication are gathered in this review. The potential cellular protein targets of plant virus proteases remain largely unknown despite their multifunctionality. The HC-Pro catalytic domain, as a cysteine protease, autoproteolytically cleaves the potyviral polyproteins in the sequence motif YXVG/G and is not expected to act on host targets; however, 146 plant proteins in the Viridiplantae clade containing this motif were searched in the UniProtKB database and are discussed. On the other hand, more than 20 interactions within the entire HC-Pro structure are known. Most of these interactions with host targets (such as the 20S proteasome, methyltransferase, transcription factor eIF4E, and microtubule-associated protein HIP2) modulate the cellular environments for the benefit of virus accumulation or contribute to symptom severity (interactions with MinD, Rubisco, ferredoxin) or participate in the suppression of RNA silencing (host protein VARICOSE, calmodulin-like protein). On the contrary, the interaction of HC-Pro with triacylglycerol lipase, calreticulin, and violaxanthin deepoxidase seems to be beneficial for the host plant. The strength of these interactions between HC-Pro and the corresponding host protein vary with the plant species. Therefore, these interactions may explain the species-specific sensitivity to potyviruses.
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Villa M, Wu J, Hansen S, Pahnke J. Emerging Role of ABC Transporters in Glia Cells in Health and Diseases of the Central Nervous System. Cells 2024; 13:740. [PMID: 38727275 PMCID: PMC11083179 DOI: 10.3390/cells13090740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/15/2024] [Accepted: 04/20/2024] [Indexed: 05/13/2024] Open
Abstract
ATP-binding cassette (ABC) transporters play a crucial role for the efflux of a wide range of substrates across different cellular membranes. In the central nervous system (CNS), ABC transporters have recently gathered significant attention due to their pivotal involvement in brain physiology and neurodegenerative disorders, such as Alzheimer's disease (AD). Glial cells are fundamental for normal CNS function and engage with several ABC transporters in different ways. Here, we specifically highlight ABC transporters involved in the maintenance of brain homeostasis and their implications in its metabolic regulation. We also show new aspects related to ABC transporter function found in less recognized diseases, such as Huntington's disease (HD) and experimental autoimmune encephalomyelitis (EAE), as a model for multiple sclerosis (MS). Understanding both their impact on the physiological regulation of the CNS and their roles in brain diseases holds promise for uncovering new therapeutic options. Further investigations and preclinical studies are warranted to elucidate the complex interplay between glial ABC transporters and physiological brain functions, potentially leading to effective therapeutic interventions also for rare CNS disorders.
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Novák V, Šařec P, Látal O. Effect of Biostimulant, Manure Stabilizer, and Manure on Soil Physical Properties and Vegetation Status. PLANTS (BASEL, SWITZERLAND) 2024; 13:920. [PMID: 38611449 PMCID: PMC11013216 DOI: 10.3390/plants13070920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 03/16/2024] [Accepted: 03/18/2024] [Indexed: 04/14/2024]
Abstract
Food production sustainability is one of contemporary agriculture's fundamental challenges. Farmers are currently facing high input prices in crop production and declining organic matter in the soil. For this reason, a field experiment was established to assess the effect of the biostimulant NeOsol (NS), the manure stabilizer Z'fix (ZF), farmyard manure (FM), and their combination in farm practice. In situ measurements provided information on the change in bulk density (BD), unit draft (UD), saturated hydraulic conductivity (SHC), and cone index (CI). Furthermore, the vegetation status was investigated via vegetation indices, and the yield and quality parameters were assessed. Management of the experimental field resulted in an overall decrease in BD over time for the treated variants compared to the control (CL). The decrease with time was also verified in the case of UD and CI at the depth zone of 10-20 cm. Variants FM (by 8.0%), FM_NS (by 7.3%), and FM_ZF_NS (by 3.8%) proved to have lower UD values than CL. An overall increase in SHC and in yield was observed over time. Concerning SHC, only FM (by 58.5%) proved different from CL. The yield of all the treated variants, i.e., NS (by 8.2%), FM (by 10.8%), FM_NS (by 14.1%), FM_ZF (by 17.8%), and FM_ZF_NS (by 20.1%), surpassed CL. Simultaneously, none of the examined treatments proved to have any adverse effect either on soil or on plant-related variables.
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Soto I, Balzani P, Carneiro L, Cuthbert RN, Macêdo R, Serhan Tarkan A, Ahmed DA, Bang A, Bacela-Spychalska K, Bailey SA, Baudry T, Ballesteros-Mejia L, Bortolus A, Briski E, Britton JR, Buřič M, Camacho-Cervantes M, Cano-Barbacil C, Copilaș-Ciocianu D, Coughlan NE, Courtois P, Csabai Z, Dalu T, De Santis V, Dickey JWE, Dimarco RD, Falk-Andersson J, Fernandez RD, Florencio M, Franco ACS, García-Berthou E, Giannetto D, Glavendekic MM, Grabowski M, Heringer G, Herrera I, Huang W, Kamelamela KL, Kirichenko NI, Kouba A, Kourantidou M, Kurtul I, Laufer G, Lipták B, Liu C, López-López E, Lozano V, Mammola S, Marchini A, Meshkova V, Milardi M, Musolin DL, Nuñez MA, Oficialdegui FJ, Patoka J, Pattison Z, Pincheira-Donoso D, Piria M, Probert AF, Rasmussen JJ, Renault D, Ribeiro F, Rilov G, Robinson TB, Sanchez AE, Schwindt E, South J, Stoett P, Verreycken H, Vilizzi L, Wang YJ, Watari Y, Wehi PM, Weiperth A, Wiberg-Larsen P, Yapıcı S, Yoğurtçuoğlu B, Zenni RD, Galil BS, Dick JTA, Russell JC, Ricciardi A, Simberloff D, Bradshaw CJA, Haubrock PJ. Taming the terminological tempest in invasion science. Biol Rev Camb Philos Soc 2024. [PMID: 38500298 DOI: 10.1111/brv.13071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 02/26/2024] [Accepted: 02/28/2024] [Indexed: 03/20/2024]
Abstract
Standardised terminology in science is important for clarity of interpretation and communication. In invasion science - a dynamic and rapidly evolving discipline - the proliferation of technical terminology has lacked a standardised framework for its development. The result is a convoluted and inconsistent usage of terminology, with various discrepancies in descriptions of damage and interventions. A standardised framework is therefore needed for a clear, universally applicable, and consistent terminology to promote more effective communication across researchers, stakeholders, and policymakers. Inconsistencies in terminology stem from the exponential increase in scientific publications on the patterns and processes of biological invasions authored by experts from various disciplines and countries since the 1990s, as well as publications by legislators and policymakers focusing on practical applications, regulations, and management of resources. Aligning and standardising terminology across stakeholders remains a challenge in invasion science. Here, we review and evaluate the multiple terms used in invasion science (e.g. 'non-native', 'alien', 'invasive' or 'invader', 'exotic', 'non-indigenous', 'naturalised', 'pest') to propose a more simplified and standardised terminology. The streamlined framework we propose and translate into 28 other languages is based on the terms (i) 'non-native', denoting species transported beyond their natural biogeographic range, (ii) 'established non-native', i.e. those non-native species that have established self-sustaining populations in their new location(s) in the wild, and (iii) 'invasive non-native' - populations of established non-native species that have recently spread or are spreading rapidly in their invaded range actively or passively with or without human mediation. We also highlight the importance of conceptualising 'spread' for classifying invasiveness and 'impact' for management. Finally, we propose a protocol for classifying populations based on (i) dispersal mechanism, (ii) species origin, (iii) population status, and (iv) impact. Collectively and without introducing new terminology, the framework that we present aims to facilitate effective communication and collaboration in invasion science and management of non-native species.
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Vozniuk O, Kejík Z, Veselá K, Skaličková M, Novotný P, Hromádka R, Hajduch J, Martásek P, Jakubek M. A Fast HPLC/UV Method for Determination of Ketoprofen in Cellular Media. ChemistryOpen 2024; 13:e202300147. [PMID: 37955865 PMCID: PMC10924040 DOI: 10.1002/open.202300147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 10/13/2023] [Indexed: 11/14/2023] Open
Abstract
A simple, sensitive and quick HPLC method was developed for the determination of ketoprofen in cell culture media (EMEM, DMEM, RPMI). Separation was performed using a gradient on the C18 column with a mobile phase of acetonitrile and miliQ water acidified by 0.1 % (v/v) formic acid. The method was validated for parameters including linearity, accuracy, precision, limit of quantitation and limit of detection, as well as robustness. The response was found linear over the range of 3-100 μg/mL as demonstrated by the acquired value of correlation coefficient R2=0.9997. The described method is applicable for determination of various pharmacokinetic aspects of ketoprofen in vitro.
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Velavalapalli VM, Maddipati V, Gurská S, Annadurai N, Lišková B, Katari NK, Džubák P, Hajdúch M, Das V, Gundla R. Novel 5-Substituted Oxindole Derivatives as Bruton's Tyrosine Kinase Inhibitors: Design, Synthesis, Docking, Molecular Dynamics Simulation, and Biological Evaluation. ACS OMEGA 2024; 9:8067-8081. [PMID: 38405484 PMCID: PMC10882696 DOI: 10.1021/acsomega.3c08343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 01/07/2024] [Accepted: 01/23/2024] [Indexed: 02/27/2024]
Abstract
Bruton's tyrosine kinase (BTK) is a non-RTK cytoplasmic kinase predominantly expressed by hemopoietic lineages, particularly B-cells. A new oxindole-based focused library was designed to identify potent compounds targeting the BTK protein as anticancer agents. This study used rational approaches like structure-based pharmacophore modeling, docking, and ADME properties to select compounds. Molecular dynamics simulations carried out at 20 ns supported the stability of compound 9g within the binding pocket. All the compounds were synthesized and subjected to biological screening on two BTK-expressing cancer cell lines, RAMOS and K562; six non-BTK cancer cell lines, A549, HCT116 (parental and p53-/-), U2OS, JURKAT, and CCRF-CEM; and two non-malignant fibroblast lines, BJ and MRC-5. This study resulted in the identification of four new compounds, 9b, 9f, 9g, and 9h, possessing free binding energies of -10.8, -11.1, -11.3, and -10.8 kcal/mol, respectively, and displaying selective cytotoxicity against BTK-high RAMOS cells. Further analysis demonstrated the antiproliferative activity of 9h in RAMOS cells through selective inhibition of pBTK (Tyr223) without affecting Lyn and Syk, upstream proteins in the BCR signaling pathway. In conclusion, we identified a promising oxindole derivative (9h) that shows specificity in modulating BTK signaling pathways.
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Abramenko N, Vellieux F, Veselá K, Kejík Z, Hajduch J, Masařík M, Babula P, Hoskovec D, Pacák K, Martásek P, Smetana K, Jakubek M. Investigation of the potential effects of estrogen receptor modulators on immune checkpoint molecules. Sci Rep 2024; 14:3043. [PMID: 38321096 PMCID: PMC10847107 DOI: 10.1038/s41598-024-51804-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 01/09/2024] [Indexed: 02/08/2024] Open
Abstract
Immune checkpoints regulate the immune system response. Recent studies suggest that flavonoids, known as phytoestrogens, may inhibit the PD-1/PD-L1 axis. We explored the potential of estrogens and 17 Selective Estrogen Receptor Modulators (SERMs) as inhibiting ligands for immune checkpoint proteins (CTLA-4, PD-L1, PD-1, and CD80). Our docking studies revealed strong binding energy values for quinestrol, quercetin, and bazedoxifene, indicating their potential to inhibit PD-1 and CTLA-4. Quercetin and bazedoxifene, known to modulate EGFR and IL-6R alongside estrogen receptors, can influence the immune checkpoint functionality. We discuss the impact of SERMs on PD-1 and CTLA-4, suggesting that these SERMs could have therapeutic effects through immune checkpoint inhibition. This study highlights the potential of SERMs as inhibitory ligands for immune checkpoint proteins, emphasizing the importance of considering PD-1 and CTLA-4 inhibition when evaluating SERMs as therapeutic agents. Our findings open new avenues for cancer immunotherapy by exploring the interaction between various SERMs and immune checkpoint pathways.
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Kambach S, Attorre F, Axmanová I, Bergamini A, Biurrun I, Bonari G, Carranza ML, Chiarucci A, Chytrý M, Dengler J, Garbolino E, Golub V, Hickler T, Jandt U, Jansen J, Jiménez-Alfaro B, Karger DN, Lososová Z, Rašomavičius V, Rūsiņa S, Sieber P, Stanisci A, Thuiller W, Welk E, Zimmermann NE, Bruelheide H. Climate regulation processes are linked to the functional composition of plant communities in European forests, shrublands, and grasslands. GLOBAL CHANGE BIOLOGY 2024; 30:e17189. [PMID: 38375686 DOI: 10.1111/gcb.17189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 01/05/2024] [Accepted: 01/10/2024] [Indexed: 02/21/2024]
Abstract
Terrestrial ecosystems affect climate by reflecting solar irradiation, evaporative cooling, and carbon sequestration. Yet very little is known about how plant traits affect climate regulation processes (CRPs) in different habitat types. Here, we used linear and random forest models to relate the community-weighted mean and variance values of 19 plant traits (summarized into eight trait axes) to the climate-adjusted proportion of reflected solar irradiation, evapotranspiration, and net primary productivity across 36,630 grid cells at the European extent, classified into 10 types of forest, shrubland, and grassland habitats. We found that these trait axes were more tightly linked to log evapotranspiration (with an average of 6.2% explained variation) and the proportion of reflected solar irradiation (6.1%) than to net primary productivity (4.9%). The highest variation in CRPs was explained in forest and temperate shrubland habitats. Yet, the strength and direction of these relationships were strongly habitat-dependent. We conclude that any spatial upscaling of the effects of plant communities on CRPs must consider the relative contribution of different habitat types.
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Krbata M, Ciger R, Kohutiar M, Sozańska M, Eckert M, Barenyi I, Kianicova M, Jus M, Beronská N, Mendala B, Slaný M. Correction: Krbata et al. Effect of Supercritical Bending on the Mechanical & Tribological Properties of Inconel 625 Welded Using the Cold Metal Transfer Method on a 16Mo3 Steel Pipe. Materials 2023, 16, 5014. MATERIALS (BASEL, SWITZERLAND) 2024; 17:658. [PMID: 38591494 PMCID: PMC10856280 DOI: 10.3390/ma17030658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Accepted: 01/17/2024] [Indexed: 04/10/2024]
Abstract
In the original publication [...].
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Socha L, Prášil T, Gryc K, Svizelova J, Saternus M, Merder T, Pieprzyca J, Nuska P. Assessment of refining efficiency during the refining cycle in a foundry degassing unit in industrial conditions. Sci Rep 2024; 14:1415. [PMID: 38228720 PMCID: PMC10791990 DOI: 10.1038/s41598-024-51914-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 01/11/2024] [Indexed: 01/18/2024] Open
Abstract
The article focuses on the issue of improving the efficiency of a Foundry Degassing Unit (FDU) via operational testing of aluminium alloys during casting at MOTOR JIKOV Slévárna a.s.. As part of the research, the efficiency of the refining process in the FDU was assessed. The main emphasis was placed on determining the moment of the greatest decrease in the hydrogen content in the melt and whether it is possible to shorten the refining cycle. The values of the Dichte Index were determined, on the basis of which the degassing curve was plotted and the progress of the melt degassing was assessed. To ensure the required quality of castings, the maximum allowable value of the Dichte Index ranged from 3 to 4%. During the process, the temperature drop during the refining cycle was also determined. The total temperature drop from pouring the melt into the ladle to the end of refining ranged from 26 to 32 °C, which is within the acceptable limits of the foundry. Based on the knowledge resulting from the operational experiments, recommendations were formulated to optimize the refining technology at the FDU for the MOTOR JIKOV Slévárna a.s. foundry.
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Průcha J, Šinkorová Z, Carrillo A, Burda T, Čuprová J. Radioreparative Effect of Diode Laser on Leukopoiesis Recovery: A Pilot Study. Life (Basel) 2024; 14:123. [PMID: 38255738 PMCID: PMC10817347 DOI: 10.3390/life14010123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 12/20/2023] [Accepted: 01/10/2024] [Indexed: 01/24/2024] Open
Abstract
The aim of the present study was to investigate the effect of laser therapy on leukopoiesis recovery after irradiation with ionizing radiation. A dose of ionizing radiation was used that induced the hematological form of radiation sickness, reducing the number of blood cells. Subsequently, mice were treated with non-ionizing laser radiation. Based on the examination of the peripheral blood, the study found that laser therapy significantly impacted the number of eosinophils and basophils two weeks after irradiation. Laser therapy also led to the faster reparation of the lymphocyte lineage of white blood cells (WBCs). The research showed that the examined therapeutic laser had a long-term radioreparative effect on gamma-irradiated mice, improving the absolute counts of different lines of WBCs. The results of this study could have implications for the treatment of radiation sickness in humans.
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Kysilov B, Kuchtiak V, Hrcka Krausova B, Balik A, Korinek M, Fili K, Dobrovolski M, Abramova V, Chodounska H, Kudova E, Bozikova P, Cerny J, Smejkalova T, Vyklicky L. Disease-associated nonsense and frame-shift variants resulting in the truncation of the GluN2A or GluN2B C-terminal domain decrease NMDAR surface expression and reduce potentiating effects of neurosteroids. Cell Mol Life Sci 2024; 81:36. [PMID: 38214768 PMCID: PMC10786987 DOI: 10.1007/s00018-023-05062-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 11/16/2023] [Accepted: 11/21/2023] [Indexed: 01/13/2024]
Abstract
N-methyl-D-aspartate receptors (NMDARs) play a critical role in normal brain function, and variants in genes encoding NMDAR subunits have been described in individuals with various neuropsychiatric disorders. We have used whole-cell patch-clamp electrophysiology, fluorescence microscopy and in-silico modeling to explore the functional consequences of disease-associated nonsense and frame-shift variants resulting in the truncation of GluN2A or GluN2B C-terminal domain (CTD). This study characterizes variant NMDARs and shows their reduced surface expression and synaptic localization, altered agonist affinity, increased desensitization, and reduced probability of channel opening. We also show that naturally occurring and synthetic steroids pregnenolone sulfate and epipregnanolone butanoic acid, respectively, enhance NMDAR function in a way that is dependent on the length of the truncated CTD and, further, is steroid-specific, GluN2A/B subunit-specific, and GluN1 splice variant-specific. Adding to the previously described effects of disease-associated NMDAR variants on the receptor biogenesis and function, our results improve the understanding of the molecular consequences of NMDAR CTD truncations and provide an opportunity for the development of new therapeutic neurosteroid-based ligands.
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Kadlecová Z, Sevriugina V, Lysáková K, Rychetský M, Chamradová I, Vojtová L. Liposomes Affect Protein Release and Stability of ITA-Modified PLGA-PEG-PLGA Hydrogel Carriers for Controlled Drug Delivery. Biomacromolecules 2024; 25:67-76. [PMID: 38135465 PMCID: PMC10777393 DOI: 10.1021/acs.biomac.3c00736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 12/12/2023] [Accepted: 12/12/2023] [Indexed: 12/24/2023]
Abstract
Fat grafting, a key regenerative medicine technique, often requires repeat procedures due to high-fat reabsorption and volume loss. Addressing this, a novel drug delivery system uniquely combines a thermosensitive, FDA-approved hydrogel (itaconic acid-modified PLGA-PEG-PLGA copolymer) with FGF2-STAB, a stable fibroblast growth factor 2 with a 21-day stability, far exceeding a few hours of wild-type FGF2's stability. Additionally, the growth factor was encapsulated in "green" liposomes prepared via the Mozafari method, ensuring pH protection. The system, characterized by first-order FGF2-STAB release, employs green chemistry for biocompatibility, bioactivity, and eco-friendliness. The liposomes, with diameters of 85.73 ± 3.85 nm and 68.6 ± 2.2% encapsulation efficiency, allowed controlled FGF2-STAB release from the hydrogel compared to the unencapsulated FGF2-STAB. Yet, the protein compromised the carrier's hydrolytic stability. Prior tests were conducted on model proteins human albumin (efficiency 80.8 ± 3.2%) and lysozyme (efficiency 81.0 ± 2.7%). This injectable thermosensitive system could advance reconstructive medicine and cosmetic procedures.
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Cienciala E, Melichar J. Forest carbon stock development following extreme drought-induced dieback of coniferous stands in Central Europe: a CBM-CFS3 model application. CARBON BALANCE AND MANAGEMENT 2024; 19:1. [PMID: 38170292 PMCID: PMC10765692 DOI: 10.1186/s13021-023-00246-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Accepted: 12/18/2023] [Indexed: 01/05/2024]
Abstract
BACKGROUND We analyze the forest carbon stock development following the recent historically unprecedented dieback of coniferous stands in the Czech Republic. The drought-induced bark-beetle infestation resulted in record-high sanitary logging and total harvest more than doubled from the previous period. It turned Czech forestry from a long-term carbon sink offsetting about 6% of the country's greenhouse gas emissions since 1990 to a significant source of CO2 emissions in recent years (2018-2021). In 2020, the forestry sector contributed nearly 10% to the country's overall GHG emissions. Using the nationally calibrated Carbon Budget Model of the Canadian Forest Sector (CBM-CFS3) at a regional (NUTS3) spatial resolution, we analyzed four scenarios of forest carbon stock development until 2070. Two critical points arise: the short-term prognosis for reducing current emissions from forestry and the implementation of adaptive forest management focused on tree species change and sustained carbon accumulation. RESULTS This study used four different spruce forest dieback scenarios to assess the impact of adaptive forest management on the forest carbon stock change and CO2 emissions, tree species composition, harvest possibilities, and forest structure in response to the recent unprecedented calamitous dieback in the Czech Republic. The model analysis indicates that Czech forestry may stabilize by 2025 Subsequently, it may become a sustained sink of about 3 Mt CO2 eq./year (excluding the contribution of harvested wood products), while enhancing forest resilience by the gradual implementation of adaptation measures. The speed of adaptation is linked to harvest intensity and severity of the current calamity. Under the pessimistic Black scenario, the proportion of spruce stands declines from the current 43-20% by 2070, in favor of more suited tree species such as fir and broadleaves. These species would also constitute over 50% of the harvest potential, increasingly contributing to harvest levels like those generated by Czech forestry prior to the current calamity. The standing stock would only be recovered in 50 years under the optimistic Green scenario. CONCLUSION The results show progress of adaptive management by implementing tree species change and quantify the expected harvest and mitigation potential in Czech forestry until 2070.
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Furtos G, Prodan D, Sarosi C, Moldovan M, Korniejenko K, Miller L, Fiala L, Iveta N. Mechanical Properties of MiniBars™ Basalt Fiber-Reinforced Geopolymer Composites. MATERIALS (BASEL, SWITZERLAND) 2024; 17:248. [PMID: 38204101 PMCID: PMC10779639 DOI: 10.3390/ma17010248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 12/16/2023] [Accepted: 12/22/2023] [Indexed: 01/12/2024]
Abstract
Fly ash-based geopolymers represent a new material, which can be considered an alternative to ordinary Portland cement. MiniBars™ are basalt fiber composites, and they were used to reinforce the geopolymer matrix for the creation of unidirectional MiniBars™ reinforced geopolymer composites (MiniBars™ FRBCs). New materials were obtained by incorporating variable amount of MiniBars™ (0, 12.5, 25, 50, 75 vol.% MiniBars™) in the geopolymer matrix. Geopolymers were prepared by mixing fly ash powder with Na2SiO3 and NaOH as alkaline activators. MiniBars™ FRBCs were cured at 70 °C for 48 h and tested for different mechanical properties. Optical microscopy and SEM were employed to investigate the fillers and MiniBars™ FRBC. MiniBars™ FRBC showed increasing mechanical properties by an increased addition of MiniBars™. The mechanical properties of MiniBars™ FRBC increased more than the geopolymer wtihout MiniBars™: the flexural strength > 11.59-25.97 times, the flexural modulus > 3.33-5.92 times, the tensile strength > 3.50-8.03 times, the tensile modulus > 1.12-1.30 times, and the force load at upper yield tensile strength > 4.18-7.27 times. SEM and optical microscopy analyses were performed on the fractured surface and section of MiniBars™ FRBC and confirmed a good geopolymer network around MiniBars™. Based on our results, MiniBars™ FRBC could be a very promising green material for buildings.
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Kašpar J, Tumajer J, Altman J, Altmanová N, Čada V, Čihák T, Doležal J, Fibich P, Janda P, Kaczka R, Kolář T, Lehejček J, Mašek J, Hellebrandová KN, Rybníček M, Rydval M, Shetti R, Svoboda M, Šenfeldr M, Šamonil P, Vašíčková I, Vejpustková M, Treml V. Major tree species of Central European forests differ in their proportion of positive, negative, and nonstationary growth trends. GLOBAL CHANGE BIOLOGY 2024; 30:e17146. [PMID: 38273515 DOI: 10.1111/gcb.17146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 12/08/2023] [Accepted: 12/15/2023] [Indexed: 01/27/2024]
Abstract
Temperate forests are undergoing significant transformations due to the influence of climate change, including varying responses of different tree species to increasing temperature and drought severity. To comprehensively understand the full range of growth responses, representative datasets spanning extensive site and climatic gradients are essential. This study utilizes tree-ring data from 550 sites from the temperate forests of Czechia to assess growth trends of six dominant Central European tree species (European beech, Norway spruce, Scots pine, silver fir, sessile and pedunculate oak) over 1990-2014. By modeling mean growth series for each species and site, and employing principal component analysis, we identified the predominant growth trends. Over the study period, linear growth trends were evident across most sites (56% increasing, 32% decreasing, and 10% neutral). The proportion of sites with stationary positive trends increased from low toward high elevations, whereas the opposite was true for the stationary negative trends. Notably, within the middle range of their distribution (between 500 and 700 m a.s.l.), Norway spruce and European beech exhibited a mix of positive and negative growth trends. While Scots pine growth trends showed no clear elevation-based pattern, silver fir and oaks displayed consistent positive growth trends regardless of site elevation, indicating resilience to the ongoing warming. We demonstrate divergent growth trajectories across space and among species. These findings are particularly important as recent warming has triggered a gradual shift in the elevation range of optimal growth conditions for most tree species and has also led to a decoupling of growth trends between lowlands and mountain areas. As a result, further future shifts in the elevation range and changes in species diversity of European temperate forests can be expected.
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