D-Tyrosine enhancement of microbiocide mitigation of carbon steel corrosion by a sulfate reducing bacterium biofilm

Microbiocides are used to control problematic microorganisms. High doses of microbiocides cause environmental and operational problems. Therefore, using microbiocide enhancers to make microbiocides more efficacious is highly desirable. 2,2-dibromo-3-nitrilopropionamide (DBNPA) is a popular biodegradable microbiocide. D-Amino acids have been used in lab tests to enhance microbiocides to treat microbial biofilms. In this investigation, D-tyrosine was used to enhance DBNPA against Desulfovibrio vulgaris biofilm on C1018 carbon steel. After 7 days of incubation, the mass loss of coupons without treatment chemicals in the ATCC 1249 culture medium was found to be 3.1 ± 0.1 mg/cm². With 150 ppm (w/w) DBNPA in the culture medium, the mass loss was reduced to 1.9 ± 0.1 mg/cm² accompanied by a 1-log reduction in the sessile cell count. The 150 ppm DBNPA + 1 ppm D-tyrosine combination attained an extra 3-log reduction in sessile cell count and an additional 30% reduction in mass loss compared with 150 ppm DBNPA only treatment. The combination also led to a smaller maximum pit depth. Linear polarization resistance (LPR), electrochemical impedance spectrometry (EIS), and potentiodynamic polarization (PDP) tests corroborated the enhancement effects.

Patterns of repeated diagnostic testing for COVID-19 in relation to patient characteristics and outcomes

BACKGROUND

Whilst the COVID-19 diagnostic test has a high false-negative rate, not everyone initially negative is re-tested. Michigan Medicine, a primary regional centre, provided an ideal setting for studying testing patterns during the first wave of the pandemic.

OBJECTIVES

To identify the characteristics of patients who underwent repeated testing for COVID-19 and determine if repeated testing was associated with downstream outcomes amongst positive cases.

METHODS

Characteristics, test results, and health outcomes for patients presenting for a COVID-19 diagnostic test were collected. We examined whether patient characteristics differed with repeated testing and estimated a false-negative rate for the test. We then studied repeated testing patterns in patients with severe COVID-19-related outcomes.

RESULTS

Patient age, sex, body mass index, neighbourhood poverty levels, pre-existing type 2 diabetes, circulatory, kidney, and liver diseases, and cough, fever/chills, and pain symptoms 14 days prior to a first test were associated with repeated testing. Amongst patients with a positive result, age (OR: 1.17; 95% CI: (1.05, 1.34)) and pre-existing kidney diseases (OR: 2.26; 95% CI: (1.41, 3.68)) remained significant. Hospitalization (OR: 7.88; 95% CI: (5.15, 12.26)) and ICU-level care (OR: 6.93; 95% CI: (4.44, 10.92)) were associated with repeated testing. The estimated false-negative rate was 23.8% (95% CI: (19.5%, 28.5%)).

CONCLUSIONS

Whilst most patients were tested once and received a negative result, a meaningful subset underwent multiple rounds of testing. These results shed light on testing patterns and have important implications for understanding the variation of repeated testing results within and between patients.

Biocorrosion caused by microbial biofilms is ubiquitous around us

Biocorrosion first surfaced in the scientific literature when Richard H. Gaines associated corrosion with bacterial activities in 1910. It is also known as microbiologically influenced corrosion (MIC). In general, it covers two scenarios. One is that microbes cause corrosion directly, which usually means microbes secrete corrosive metabolites or microbes harvest electrons from a metal for respiration to produce energy. In the second scenario, microbes are behind the initiation or acceleration of corrosion caused by a pre-existing corrosive agent such as water and CO2 , by compromising the passive film (often a metal oxide film on a metal). MIC is caused by microbial biofilms. It is everywhere around us. This work dissects some notable examples with perspectives.

Pattern-recognition receptors in duck (Anas platyrhynchos): identification, expression and function analysis of toll-like receptor 3

1. Innate immunity provides the first line of defence against pathogenic organisms through a myriad of germline encoded receptors called pattern-recognition receptors (PRRs). Toll-like receptor (TLR) 3, as an important member of PRRs, is indispensable for host defence against viral infection by recognising virus-derived RNAs. However, little is known about the structure and function of TLR3 in ducks (Anas platyrhynchos), a natural host for the avian influenza virus.2. This study cloned the full-length cDNA of duck TLR3 using reverse transcription polymerase chain reaction (RT-PCR) with rapid amplification of cDNA ends (RACE). The cDNA sequence of duck TLR3 was 4046 bp in length and encoded 895 amino acids. Multiple sequence alignment showed that duck TLR3 shared high similarity with that from other vertebrates.3. Quantitative real-time PCR (qRT-PCR) analysis suggested that TLR3 mRNA was constitutively expressed in all tissues tested, having higher levels in the kidney, liver, breast muscle, ovary and heart. After stimulation with viral- or bacterial-mimics, including LPS, poly(I:C), pam3CSK4, FLS-1, FLA-ST and R848, the TLR3 transcript was significantly upregulated. Meanwhile, overexpression of duck TLR3 significantly promoted the transcription of IFN-β, IRF7, TRIF, Mx, STAT1 and STAT2 mRNA after stimulation with poly(I:C).4. These results suggested that TLR3 play an important role in resistance against viral and bacterial infections in ducks.

Cardioprotection by remote ischemic conditioning is transferable by plasma and mediated by exosomes

Background

Remote ischemic conditioning (RIC) by brief periods of limb ischemia and reperfusion protects against ischemia-reperfusion injury. However, the mechanism is unknown.

Purpose

We studied the role of exosomes for mediating the cardioprotective signal and whether they accumulate in injured myocardium.

Methods

Blood samples from 12 healthy male volunteers were obtained prior to and one hour after RIC. Plasma obtained before and after RIC (n=4) (P-Pre and P-Post) was used to evaluate the transferability of RIC. Pre- and Post-RIC plasma (n=8) was separated into an exosome rich fraction (Exo-Pre and Exo-Post) and an exosome depleted fraction (Prot-Pre and Prot-Post) by size exclusion chromatography. All studies were carried out in duplicate samples from each volunteer. Infarct size was compared in Sprague-Dawley rat hearts perfused with plasma, exosomes and exosome depleted fractions in a Langendorff model. We investigated changes in the miRNA content of the exosomes after RIC by a human miRNA panel. Additionally, fluorescently labeled exosomes isolated from C2C12 cells were used to assess accumulation in injured myocardium in an in vivo rat model. Rats were divided into an infarct group (n=6) (left anterior descending artery ligation) and a sham group (n=6) (without ligation). Labelled exosomes were injected in the femoral vein prior to reperfusion. Exosome-accumulation in infarcted or sham myocardium was evaluated.

Results

P-Post reduced infarct size by 15% points compared with P-Pre (55±4% vs 70±6%, p=0.03) (Fig. 1a). Exo-Post reduced infarct size by 16% points compared with Exo-Pre (53±15% vs 68±12%, p=0.03) (Fig. 1b). Prot-Post did not affect infarct size compared to Prot-Pre (64±3% and 68±10%, p>0.99). We found miRNA-16, miRNA-144 and miRNA-451 to be upregulated in exosomes after RIC and the mTOR-pathway as a potential target for these miRNAs. In the in vivo model, labelled exosomes accumulated more intensively in the infarct area than in remote areas and sham hearts (Fig. 1c).

Conclusion

Cardioprotection by RIC is mediated by exosomes with a changed miRNA profile and exosomes accumulate in injured myocardium.

Figure 1

Funding Acknowledgement

Type of funding source: Private company. Main funding source(s): Novo synergy

Ultrasound-assisted leaching of spent lithium ion batteries by natural organic acids and H2O2

Ultrasound-assisted bioacid leaching was examined for the extraction of valuable metals from spent lithium ion batteries (LIBs). In this work, organic acids in lemon juice were used as the leaching agent together with H₂O₂. Three effective factors, namely solid/liquid (S/L) ratio, lemon juice percentage, and H₂O₂ volume percentage, were optimized using Response Surface Methodology (RSM). The optimal conditions were found to be 0.98% (w/v) S/L ratio, 57.8% (v/v) lemon juice and 8.07% (v/v) H₂O₂ in the leaching liquor, achieving recovery of 100% Li, 96% Co and 96% Ni. Furthermore, the individual effects of ultrasound, H₂O₂ and lemon juice on metal recovery were studied and the results showed that without H₂O₂ or lemon juice, the metal recovery rates decreased greatly while the absence of ultrasound reduced recovery rates to a much smaller extent, indicating that both H₂O₂ and lemon juice were essential in the leaching process. The effect of time on the metals recoveries was examined and results showed that Li and Co recovery reached 100% with the leaching time of 35 min. The modified shrinking core modeling results suggested that chemical reaction was the rate controlling step.

Preliminary Investigation of Utilization of a Cellulose-Based Polymer in Enhanced Oil Recovery by Oilfield Anaerobic Microbes and its Impact on Carbon Steel Corrosion

Water injection increases reservoir pressure in enhanced oil recovery (EOR). Among other oilfield performance chemicals, an EOR polymer is added to the injection water to provide the viscosity necessary for effective displacement of viscous crude oil from the reservoir formation. However, these organic macromolecules may be degraded by microbes downhole, causing undesirable viscosity loss. The organic carbon utilization by the microbes promotes microbial metabolism, thus potentially exacerbating microbiologically influenced corrosion (MIC). In this preliminary laboratory investigation, 3,000 ppm (w/w) carboxymethyl cellulose sodium (CMCS), a commonly used EOR polymer, was found to be utilized by an oilfield biofilm consortium. This oilfield biofilm consortium consisted of bacteria (including that can degrade large organic molecules), sulfate-reducing bacteria (SRB), and other microorganisms. A 30-day incubation in 125 mL anaerobic vials was conducted with an artificial seawater medium without yeast extract and lactate supplements at 37°C. The polymer biodegradation led to 16% viscosity loss in the broth and a 30× higher SRB sessile cell count. Slightly increased MIC weight loss and pitting corrosion were observed on C1018 carbon steel coupons. Thus, the use of CMCS in EOR should take into the consideration of microbial degradation and its impact on MIC.

Microbial ingress and in vitro degradation enhanced by glucose on bioabsorbable Mg-Li-Ca alloy

Biodegradable magnesium alloys are challenging to be implanted in patients with hyperglycemia and diabetes. A hypothesis is suggested that glucose accelerates microbial ingress and in vitro degradation of Mg-Li-Ca implants. Corrosion resistance and mechanical properties was demonstrated using electrochemical, hydrogen evolution and tensile tests. The bacteria from Hank's solution were isolated via 16S rRNA gene analysis. The results revealed that Mg-1Li-1Ca alloy exhibited different responses to Hank's solution with and without glucose. The solution acidity was ascribed to Microbacterium hominis and Enterobacter xiangfangensis, indicating that glucose promoted microbial activity and degradation and deterioration in mechanical property of Mg-1Li-1Ca alloy.

A NOVEL INTRAGENIC DELETION RELATED TO THE ARGININE VASOPRESSIN V2 RECEPTOR CAUSES NEPHROGENIC DIABETES INSIPIDUS

BACKGROUND

Nephrogenic diabetes insipidus (NDI) is a disease characterized by a defective response to the antidiuretic hormone (ADH) of the renal collecting duct leading to a decline in the ability of the pro-urine concentration.

CASE PRESENTATION

A 23-year-old man presented with an over 20-year history of polyuria concomitant with hydronephrosis. The diagnosis of NDI was established by gene analysis as well as a water-deprivation and vasopressin test. All exons of arginine vasopressin V2 receptor (AVPR2) gene were amplified and sequenced. A novel hemizygous intragenic inframe deletion, cDNA 255^th bp to 263^th bp in exon 2 of AVPR2, was identified. These relevant translations from the 85^th amino acid Asp to 88^th amino acid Val were missed and replaced by amino acid Glu. After treating the patient with hydrochlorothiazide, his symptoms improved significantly.

CONCLUSION

The genetic analysis revealed a novel X-linked intragenic inframe deletion, AVPR2 gene cDNA 255^th bp to 263^th bp, causing NDI.

Characteristics of oxidative stress and antioxidant defenses by a mixed culture of acidophilic bacteria in response to Co2+ exposure

During bioleaching of Cobalt from waste lithium-ion batteries, the biooxidation activity of acidophilic bacteria is inhibited by a high concentration of Co ion in the liquid phase. However, the mechanism for Co²⁺ toxicity to acidophilic bacteria has not been fully elucidated. In this study, the effects of Co²⁺ concentration on the biooxidation activity for Fe²⁺, intracellular reactive oxygen species (ROS) level and antioxidant defense systems in a mixed-culture of acidophilic bacteria (MCAB) were investigated. The results showed that the biooxidation activity of the MCAB was inhibited by Co²⁺. Furthermore, it was indicated that the intracellular ROS contents of the MCAB under conditions of 0.4 M and 0.6 M Co²⁺ were 2.60 and 3.34 times higher than that under the condition of 0 M Co²⁺. The increase in intracellular malondialdehyde content indicated that the oxidative damage was induced by Co²⁺. Moreover, the antioxidant systems in MCAB were affected by Co²⁺. It was observed that the Co²⁺ exposure increased the catalase and glutathione peroxidase activities while reducing the superoxide dismutase activity and the intracellular glutathione (GSH) content. It was found that an exogenous GSH supplementation eliminated excess intracellular ROS and improved the biooxidation activity of the MCAB.

Oxidative Stress Induced by Metal Ions in Bioleaching of LiCoO2 by an Acidophilic Microbial Consortium

An acidophilic microbial consortium (AMC) was used to investigate the fundamental mechanism behind the adverse effects of pulp density increase in the bioleaching of waste lithium ion batteries (WLIBs). Results showed that there existed the effect of metal-ion stress on the bio-oxidative activity of AMC. The Li+ and Co2+ accumulated in the leachate were the direct cause for the decrease in lithium and cobalt recovery yields under a high pulp density. In a simulated bioleaching system with 4.0% (w ⋅v-1) LiCoO2, the intracellular reactive oxygen species (ROS) content in AMC increased from 0.82 to 6.02 within 24 h, which was almost three times higher than that of the control (2.04). After the supplementation of 0.30 g⋅L-1 of exogenous glutathione (GSH), the bacterial intracellular ROS content decreased by 40% within 24 h and the activities of intracellular ROS scavenging enzymes, including glutathione peroxidase (GSH-Px) and catalase (CAT), were 1.4- and 2.0-folds higher in comparison with the control within 24 h. In the biofilms formed on pyrite in the bioleaching of WLIBs, it was found that metal-ion stress had a great influence on the 3-D structure and the amount of biomass of the biofilms. After the exogenous addition of GSH, the structure and the amount of biomass of the biofilms were restored to some extent. Eventually, through ROS regulation by the exogenous addition of GSH, very high metal recovery yields of 98.1% Li and 96.3% Co were obtained at 5.0% pulp density.

Correction: Ultrasound-assisted leaching of vanadium from fly ash using lemon juice organic acids

Correction for ‘Ultrasound-assisted leaching of vanadium from fly ash using lemon juice organic acids’ by G. Rahimi et al., RSC Adv., 2020, 10, 1685–1696, DOI: 10.1039/C9RA09352G.

Ultrasound-assisted leaching of vanadium from fly ash using lemon juice organic acids

In this work, vanadium (V) was selectively extracted from fuel-oil fly ash using a leaching process utilizing organic acids extracted from lemon juice with assistance from ultrasound and H₂O₂. Response Surface Methodology (RSM) was used to optimize the main operating factors. The V recovery was 88.7% at the optimal conditions: 27.9% (v/v) lemon juice, 10% (v/v) hydrogen peroxide (H₂O₂), solid/liquid (S/L) ratio 0.01% (w/v), ultrasound power 159 W at 20 kHz in 2 h, and initial temperature of 35 °C. The effect of time on the V recovery was examined. The maximum recovery was 100% after 3 h. Furthermore, the individual effects of ultrasound and H₂O₂ on V recovery were studied, and the results showed that without H₂O₂ and ultrasound, the V recovery decreased greatly, indicating that both factors were essential in the leaching process. According to the modified shrinking core model, test results indicated that mass diffusion was the controlling step of the overall reaction kinetics. The activation energy of the leaching reaction in the temperature range 25 to 65 °C was found to be 17.1 kJ mol⁻¹.

In this work, vanadium (V) was selectively extracted from fuel-oil fly ash using a leaching process utilizing organic acids extracted from lemon juice with assistance from ultrasound and H₂O₂.

Microbiologically Influenced Corrosion of Carbon Steel Beneath a Deposit in CO2-Saturated Formation Water Containing Desulfotomaculum nigrificans

The corrosion mechanism of carbon steel under deposit in the presence of sulfate reducing bacterium (SRB) Desulfotomaculum nigrificans was studied using surface analysis, weight loss and electrochemical measurements. Results showed that both the general corrosion and localized corrosion were considerably promoted by SRB under deposit. The corrosion rate of steel in the presence of SRB was approximately 6 times of that for the control according to the weight loss measurements. The maximum corrosion pit depth in the presence of SRB was approximately 7.7 times of that of the control. Both the anodic and cathodic reactions were significantly accelerated by SRB. A galvanic effect in the presence of SRB due to the heterogeneous biofilm led to serious localized corrosion.

Carbon dioxide sequestration accompanied by bioenergy generation using a bubbling-type photosynthetic algae microbial fuel cell

This study developed a bubbling-type photosynthetic algae microbial fuel cell (B-PAMFC) to treat synthetic wastewater and capture CO₂ using Chlorella vulgaris with simultaneous power production. The performance of B-PAMFC in CO₂ fixation and bioenergy production was compared with the photosynthetic algae microbial fuel cell (PAMFC) and bubbling photobioreactor. Different nitrogen sources for C. vulgaris growth, namely sodium nitrate, urea, ammonium acetate and acetamide were studied. The maximum CO₂ fixation rate in B-PAMFC with 2.8 g L^-1 urea reached 605.3 mg L^-1 d^-1, 3.86-fold higher than that in PAMFC. Urea also enhanced the solution absorption of CO₂. Furthermore, the B-PAMFC reached a high lipid productivity of 105.9 mg L^-1 d^-1. An energy balance analysis indicated that B-PAMFC had a maximum net energy of 1.824 kWh m^-3, making it a lab-scale energy-positive system. The B-PAMFC with urea as nitrogen source would provide an attractive strategy for simultaneous CO₂ sequestration and bioenergy production.

Advances in bioleaching for recovery of metals and bioremediation of fuel ash and sewage sludge

Bioleaching has been successfully used in commercial metal mining for decades. It uses microbes to biosolubilize metal-containing inorganic compounds such as metal oxides and sulfides. There is a growing interest in using bioleaching for bioremediation of solid wastes by removing heavy metals from ash and sewage sludge. This review presents the state of the art in bioleaching research for recovery of metals and bioremediation of solid wastes. Various process parameters such as reaction time, pH, temperature, mass transfer rate, nutrient requirement, pulp density and particle size are discussed. Selections of more effective microbes are assessed. Pretreatment methods that enhance bioleaching are also discussed. Critical issues in bioreactor scale-up are analyzed. The potential impact of advances in biofilm and microbiome is explained.