Simple yet effective: Microbial and biotechnological benefits of rumen liquid addition to lignocellulose-degrading biogas plants

In biogas plants, lignocellulose-rich biomass (LCB) is particularly slowly degraded, causing high hydraulic retention times. This fact lowers the interests for such substrates. To enhance LCB-degradation, cattle rumen fluid, a highly active microbial resource accruing in the growing meat industry, might be used as a potential source for bioaugmentation. This study compares 0%, 20% and 40% rumen liquid in a batch anaerobic digestion approach. Moreover, it determines the biogas- and methane-potentials as well as degradation-speeds of corn straw, co-digested with cattle manure. It inspects microbial communities via marker-gene sequencing, qPCR and RNA-DGGE and draws attention on possible beneficial effects of rumen addition on the biogas-producing community. Bioaugmentation with 20% and 40% v/v rumen liquid accelerated methane yields by 5 and 6 days, respectively (i.e. reaching 90% of total methane production). It also enhanced LCB- as well as (hemi)cellulose- and volatile fatty acid degradation. These results are supported by increased abundances of bacteria, methanogens and anaerobic fungi in treatments with rumen liquid amendment, and point towards the persistence of specific rumen-borne microorganisms especially during the first phase of the experiment. The results suggest that rumen liquid addition is a promising strategy for enhanced and accelerated exploitation of LCB for biomethanisation.

Rabbit manure as a potential inoculum for anaerobic digestion

The potential of using rabbit manure as inoculum for biogas production was evaluated through batch assays using bean straw as substrate. The microbial diversity in the rabbit manure included lignin-degrading bacteria (classes Bacteroidia, Bacilli and Clostridia) as well as key acetoclastic (Matheanosarcina and Methanosaeta), and hydrogenotrophic (Methanobacterium, Methanolinea, and Methanovebribacter) archaea. The effects of particle size, substrate to inoculum ratio (S/X) and pH adjustment were studied to improve the inoculum activity. The adjustment of the pH entailed the highest improvement in methane production (515%) and rate (164%). However, high S/X, (3-4), resulted in the acidification of the processes, denoting an imbalance between hydrolytic bacteria and methanogenic archaea in the rabbit manure. This confirmed that the use of rabbit manure as inoculum could sustain anaerobic digestion from agricultural residues, although a proper enrichment and adaptation is necessary to ensure an appropriate methane production.

Prospective Approach to the Anaerobic Bioconversion of Benzo- and Dibenzothiophene Sulfones to Sulfide

Sulfur recovery from organic molecules such as toxic sulfones is an actual problem, and its solution through the use of environmentally friendly and nature-like processes looks attractive for research and application. For the first time, the possible bioconversion of organic sulfones (benzo-and dibenzothiophene sulfones) to inorganic sulfide under anaerobic conditions with simultaneous biogas production from glucose within a methanogenesis process is demonstrated. Biogas with a methane content of 50.7%-82.1% was obtained without H2S impurities. Methanogenesis with 99.7%-100% efficiency and 97.8%-100% conversion of benzo- and dibenzothiophene sulfones (up to 0.45 mM) to inorganic sulfide were obtained in eight days by using a combination of various anaerobic biocatalysts immobilized in a poly(vinyl alcohol) cryogel. Pure cell cultures of sulfate-reducing bacteria and/or H2-producing bacteria were tested as additives to the methanogenic activated sludge. The immobilized activated sludge "enhanced" by bacterial additives appeared to retain its properties and be usable multiple times for the conversion of sulfones under batch conditions.

Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

BACKGROUND

In biogas plants, complex microbial communities produce methane and carbon dioxide by anaerobic digestion of biomass. For the characterization of the microbial functional networks, samples of 11 reactors were analyzed using a high-resolution metaproteomics pipeline.

RESULTS

Examined methanogenesis archaeal communities were either mixotrophic or strictly hydrogenotrophic in syntrophy with bacterial acetate oxidizers. Mapping of identified metaproteins with process steps described by the Anaerobic Digestion Model 1 confirmed its main assumptions and also proposed some extensions such as syntrophic acetate oxidation or fermentation of alcohols. Results indicate that the microbial communities were shaped by syntrophy as well as competition and phage-host interactions causing cell lysis. For the families Bacillaceae, Enterobacteriaceae, and Clostridiaceae, the number of phages exceeded up to 20-fold the number of host cells.

CONCLUSION

Phage-induced cell lysis might slow down the conversion of substrates to biogas, though, it could support the growth of auxotrophic microbes by cycling of nutrients.

Investigation on the Cultivation Conditions of a Newly Isolated Fusarium Fungal Strain for Enhanced Lipid Production

Fusarium equiseti UMN-1 fungal strain isolated from soybean is selected as a potential oleaginous fungal strain for biodiesel generation. It possesses desirable features, such as high lipid content (up to 56%) and high fatty acid methyl ester (FAME) content (more than 98%) in total lipids, and also has the capability to produce cellulase. This research focused on the investigation of the characteristics of this strain and optimization of culture conditions to enhance lipid production. Impact of temperature, agitation, C/N ratio, medium composition, and carbon and nitrogen sources has been observed, and central composite design (CCD) has been applied to improve the lipid accumulation. The optimum range for temperature, agitation, C/N ratio, and carbon and nitrogen concentrations was discovered, and the CCD model with the optimized growth medium and growth conditions achieved a maximum lipid production of 3.89 g/L. This research on F. equiseti UMN-1 fungal strain is expected to improve the feasibility of using microbial lipids of F. equiseti UMN-1 strains as the source of biofuels.

The Toxic Effect of Herbicidal Ionic Liquids on Biogas-Producing Microbial Community

The aim of the study was to evaluate the effect of herbicidal ionic liquids on the population changes of microorganisms used in a batch anaerobic digester. The influence of the following ionic liquids: benzalkonium (2,4-dichlorophenoxy)acetate (BA)(2,4-D), benzalkonium (4-chloro-2-methylphenoxy)acetate (BA)(MCPA), didecyldimethylammonium (2,4-dichlorophenoxy)acetate (DDA)(2,4-D), didecyldimethylammonium (4-chloro-2-methylphenoxy)acetate (DDA)(MCPA), as well as reference herbicides (4-chloro-2-methylphenoxy)acetic acid (MCPA) and (2,4-dichlorophenoxy)acetic acid (2,4-D) in the form of sodium salts on biogas production efficiency was investigated. The effective concentration (EC50) values were determined for all tested compounds. (MCPA)^- was the most toxic, with an EC50 value of 38.6⁻41.2 mg/L. The EC50 for 2,4-D was 55.7⁻59.8 mg/L. The addition of the test substances resulted in changes of the population structure of the microbiota which formed the fermentation pulp. The research was based on 16S rDNA analysis with the use of the Next Generation Sequencing method and the MiSeq platform (Illumina, San Diego, CA, USA). There was a significant decrease in bacteria belonging to Firmicutes and Archaea belonging to Euryarchaeota. A significant decrease of the biodiversity of the methane fermentation microbiota was also established, which was expressed by the decrease of the operational taxonomic units (OTUs) and the value of Shannon's entropy. In order to determine the functional potential of bacterial metapopulations based on the 16SrDNAprofile, the PICRUSt(Phylogenetic Investigation of Communities by Reconstruction of Unobserved States)tool was used, which allowed to determine the gene potency of microorganisms and their ability to biodegrade the herbicides. In the framework of the conducted analysis, no key genes related to the biodegradation of MCPA or 2,4-D were found, and the observed decrease of their content in the supernatant liquid was caused by their sorption on bacterial biomass.

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis

Ammonia caused disturbance of biogas production is one of the most frequent incidents in regular operation of biogas reactors. This study provides a detailed insight into the microbial community of a mesophilic, full-scale biogas reactor (477 kWh h-1 ) fed with maize silage, dried poultry manure and cow manure undergoing initial process disturbance by increased ammonia concentration. Over a time period of 587 days, the microbial community of the reactor was regularly monitored on a monthly basis by high-throughput amplicon sequencing of the archaeal and bacterial 16S rRNA genes. During this sampling period, the total ammonia concentrations varied between 2.7 and 5.8 g l-1 [NH4 + -N]. To gain further inside into the active metabolic pathways, for selected time points metatranscriptomic shotgun analysis was performed allowing the quantification of marker genes for methanogenesis, hydrolysis and syntrophic interactions. The results obtained demonstrated a microbial community typical for a mesophilic biogas plant. However in response to the observed changing process conditions (e.g. increasing NH4 + levels, changing feedstock composition), the microbial community reacted highly flexible by changing and adapting the community composition. The Methanosarcina-dominated archaeal community was shifted to a Methanomicrobiales-dominated archaeal community in the presence of increased ammonia conditions. A similar trend as in the phylogenetic composition was observed in the transcription activity of genes coding for enzymes involved in acetoclastic methanogenesis and syntrophic acetate oxidations (Codh/Acs and Fthfs). In accordance, Clostridia simultaneously increased under elevated ammonia concentrations in abundance and were identified as the primary syntrophic interaction partner with the now Methanomicrobiales-dominated archaeal community. In conclusion, overall stable process performance was maintained during increased ammonia concentration in the studied reactor based on the microbial communities' ability to flexibly respond by reorganizing the community composition while remaining functionally stable.

Anaerobic treatability and residual biogas potential of the effluent stream of anaerobic digestion processes

Although anaerobic digestion is a well-established technology, the treatment and disposal of the digestate still presents a challenge due to lack of viable methods for processing. The residual organic matter in digestates also creates a significant residual biogas potential. This fact indicates that the digestates need further processing not only to reduce their organic content for disposal, but also to capture the biogas associated with this residual organic content. This study investigated anaerobic treatment and residual biogas potential of digestates obtained from five full-scale farm-based digesters. The results indicated that it was possible to reduce the total chemical oxygen demand (COD_t ) of the digestates with an efficiency of 21%-84%. The corresponding biogas yields of digestates ranged between 0.078 and 0.326 L_biogas /g VS_added . This level of biogas production is comparable to the biogas production potential of several commonly used raw substrates. PRACTITIONER POINTS: Significant CODt reduction and biogas capture can be attained by AD of digestates. The digestates subjected to anaerobic treatment yielded up to 82% CODt removal. Residual biogas yields of digestates ranged between 0.078-0.326 Lbiogas/g VSadded. Biogas yields obtained were comparable to many raw feedstocks of biogas plants.

A novel rapid ultrasonication-microwave treatment for total lipid extraction from wet oleaginous yeast biomass for sustainable biodiesel production

Oleaginous yeasts have emerged as a sustainable source of renewable oils for liquid biofuels. However, biodiesel production from them has a few constraints with respect to their cell disruption and lipid extraction techniques. The lipid extraction from oleaginous yeasts commonly includes dewatering and drying of cell biomass, which requires energy and time. The aim of this work was to establish a process for the lipid extraction from wet biomass applying acid catalyzed hot water, as well as microwave, and rapid ultrasonication-microwave treatment together with the conventional Bligh and Dyer method. In the wake of testing all procedures, it was revealed that rapid ultrasonication-microwave treatment has great potential to give high lipid content (70.86% w/w) on the cell dry weight basis. The lipid profile after treatment showed the presence of appropriate quantities of saturated (10.39 ± 0.15%), monounsaturated (76.55 ± 0.19%) and polyunsaturated fatty acids (11.49 ± 0.23%) which further improves biodiesel quality compared to the other methods. To the best of our knowledge, this is the first report of using rapid ultrasonication-microwave treatment for the lipid extraction from wet oleaginous yeast biomass in the literature.

Energy balance for biodiesel production processes using microbial oil and scum

Biodiesel production using microbial oil is a promising technology. The main aim of this study is to check practical feasibility (in terms of energy balance) of different biodiesel production processes. Mass and energy balance of biodiesel production have been performed for 3 separate processes: (1) microbial lipid production from T. oleaginosus using waste substrates followed by INRS downstream process (2) microbial lipid production from pure substrate using R. toruloides followed by traditional and INRS downstream process and 3) oil extraction from scum and conversion to biodiesel. It was found that employing waste substrates like crude glycerol and municipal sludge in fermentation reduced the energy input by 50%. While employing biodegradable surfactants and petroleum-diesel as solvent (PD) for lipid extraction and recovery significantly reduced the energy input at cell wall disruption step. Biodiesel production from scum is a two-step process which is fast and energetically favorable.

Producing Oleaginous Microorganisms Using Wastewater: Methods and Guidelines for Lab- and Industrial-Scale Production

Cultivation of oleaginous microorganisms on wastewater provides alternative biofuel options while also acting as a remediation technique for alternative wastewater treatment. This chapter describes guidelines and methods for the production of oleaginous microorganisms-with a focus on microalgae-using wastewater as a growth medium while considering a variety of general challenges for both lab- and industrial-scale production. Cultivation techniques described here range in scale from microplates with 10-mL working volumes, up to multigallon, industrial-scale microorganism cultivation, with a focus on microalgae. This chapter includes guidelines for the preparation of wastewater and selection of oleaginous microorganisms combined with methods for the production of oleaginous microorganisms cultivated using wastewater.

Targeted knockout of phospholipase A2 to increase lipid productivity in Chlamydomonas reinhardtii for biodiesel production

Biofuel derived from microalgae have several advantages over other oleaginous crops, however, still needs to be improved with its cost aspect and can be achieved by developing of a strain with improved lipid productivity. In this study, the CRISPR-Cas9 system was incorporated to carry out a target-specific knockout of the phospholipase A₂ gene in Chlamydomonas reinhardtii. The targeted gene encodes a key enzyme in the Lands cycle. As a result, the mutants showed a characteristic of increased diacylglycerol pool, followed by a higher accumulation of triacylglycerol without being significantly compensated with the cell growth. As a result, the overall lipid productivities of phospholipase A₂ knockout mutants have increased by up to 64.25% (to 80.92 g L^-1 d^-1). This study can provide crucial information for the biodiesel industry.

Performance of a novel photobioreactor for nutrient removal from piggery biogas slurry: Operation parameters, microbial diversity and nutrient recovery potential

Photobioreactor is deemed to be one of limiting factors for the commercial application of wastewater treatment based on microalgae cultivation. In this study, a novel Flat-Plate Continuous Open Photobioreactor (FPCO-PBR) was developed to treat piggery biogas slurry. The operation parameters, microbial stability and nutrient recovery potential of FPCO-PBR were investigated. Results showed that the appropriate influent mode for FPCO-PBR was multi-point or spraying mode. The optimal hydraulic retention time and interval time for biomass harvesting of FPCO-PBR were both 2 d. Nitrogen and phosphorus recovery rate were 30 mg L^-1 d^-1 and 7 mg L^-1 d^-1 respectively under optimal operating parameters. Microbial diversity remained relatively stable in FPCO-PBR. Biomass production rate of FPCO-PBR was 0.47 g L^-1 d^-1 under optimal operating parameters. The revenue generated from biomass was estimated to be 15.06 $ kg^-1, which means that treating one ton of wastewater can generate $ 7.08 in revenue.

Concomitant production of chitosan and lipids from a newly isolated Mucor circinelloides ZSKP for biodiesel production

A newly-isolated oleaginous fungus Mucor circinelloides ZSKP concurrently yielded 21.4% lipids and 11.2% chitosan per gram of biomass. Parameters affecting the co-production were identified using Plackett-Burman design and were statistically optimized using Response Surface Methodology, which resulted in a 3-fold improvement in lipid production. The lipid profile showed a high content of unsaturated fatty acids including oleic (37%), linolenic (14%) and linoleic acids (19%), while palmitic acid was the major saturated fatty acid (21%). A comparative study to evaluate the efficacy of enzymatic (lipase) and chemical treatments for biodiesel production from fungal lipids and sunflower oil revealed enhanced production of biodiesel from fungal lipids. Synthesized biodiesel from M. circinelloides ZSKP satisfied standard specifications and had a higher cetane number (56), lower kinematic viscosity (4.6 mm²/s) and lower acid number (0.03) compared to sunflower oil. Results suggest Mucor circinelloides ZSKP is a promising candidate for implementation of the biorefinery concept.

Conversion of Microbial Lipids to Biodiesel and Basic Lab Tests for Analysis of Fuel-Quality Parameters

This chapter describes lab-scale procedures for the direct conversion of microbial lipids to fatty acid methyl esters (FAMEs) for use as biodiesel fuel. Methods for the gas chromatography analysis of FAME profiles and equations to predict several fuel-quality parameters are detailed herein. This chapter also provides a complete list summarizing each of the fuel quality tests (e.g., sample size and equipment) that are required by ASTM International D6751 regulations for pure biodiesel fuel (B100) or blend stock. Recommendations for the decolorization of microbial lipid sources containing pigments are also included. This resource should provide a guide to basic conversion and characterization of microbial-derived biodiesel fuels and a roadmap for more-detailed testing required to assess commercial feasibility.

Life Cycle Analysis of Producing Microbial Lipids and Biodiesel: Comparison with Plant Lipids

Life Cycle Assessment is the "compilation and evaluation of the inputs, outputs and the potential environmental impacts of a product system throughout its life cycle" (ISO 14040). Examples of environmental impacts include climate change, ozone depletion, toxicity, eutrophication, particulate matter, radiation, and more. In this chapter we describe the process of undertaking an LCA for algal products, considering the ISO 14040 and ISO 14044, standards, as well as information from the European Renewable Energy Directive. We describe popular software packages, and the approach of purely using a spreadsheet with an example of algae- and soy-based biodiesel.

Producing Oleaginous Organisms Using Food Waste: Challenges and Outcomes

With organic or food waste being one of the main constituents of the total urban waste generated, it not only makes it essential to seek means for its safe disposal but at the same time reiterates the huge potential that lies with the proper utilization of such a widely available resource. Oleaginous microbes that are effective in producing or storing oil would use food waste rich in carbohydrates, lipids, and proteins, and this oil in turn could be an alternative feedstock for the production of biofuels. However, there are few challenges in the process. The various challenges in this process and methods to address them are discussed in the present chapter.

Potential of aquatic oomycete as a novel feedstock for microbial oil grown on waste sugarcane bagasse

Biodiesel production from vegetable oils is not sustainable and economical due to the food crisis worldwide. The development of a cost-effective non-edible feedstock is essential. In this study, we proposed to use aquatic oomycetes for microbial oils, which are cellulolytic fungus-like filamentous eukaryotic microorganisms, commonly known as water molds. They differ from true fungi as cellulose is present in their cell wall and chitin is absent. They show parasitic as well as saprophytic nature and have great potential to utilize decaying animal and plant debris in freshwater habitats. To study the triacylglycerol (TAG) accumulation in the aquatic oomycetes, the isolated water mold Achlya diffusa was cultivated under semi-solid-state conditions on waste sugarcane bagasse, which was compared with the cultivation in Czapek (DOX) medium. A. diffusa grown on waste sugarcane bagasse showed large lipid droplets in its cellular compartment and synthesized 124.03 ± 1.93 mg/gds cell dry weight with 50.26 ± 1.76% w/w lipid content. The cell dry weight and lipid content of this water mold decreased to 89.54 ± 1.21 mg/gds and 38.82% w/w, respectively, when cultivated on standard medium Czapek-Dox agar (CDA). For the fatty acid profile of A. diffusa grown in sugarcane bagasse and CDA, in situ transesterification (IST) and indirect transesterification (IDT) approaches were evaluated. The lipid profile of this mold revealed the presence of C_12:0, C_14:0, C_16:0, C_18:0, C_18:1, C_18:2, C_20:0, and C_21:0 fatty acids, which is similar to vegetable oils. The biodiesel properties of the lipids obtained from A. diffusa satisfied the limits as determined by international standards ASTM-D6751 and EN-14214 demonstrating its suitability as a fuel for diesel engines.

Responses and successions of sulfonamides, tetracyclines and fluoroquinolones resistance genes and bacterial community during the short-term storage of biogas residue and organic manure under the incubator and natural conditions

Biogas residue and organic manure are frequently used for crop planting. However, the evaluation of antibiotic resistant bacteria (ARB), antibiotic resistance genes (ARGs) and bacterial community before their applications to fields is still lacking. This study monitored the variations of bacteria resistant to sulfadiazine, tetracycline and norfloxacin, 57 resistance genes for sulfonamides, tetracyclines and fluoroquinolones as well as the bacterial community during the 28-day aerobic storage of biogas residue and organic manure by using viable plate counts, high-throughput qPCR and Illumina MiSeq sequencing methods. Then two storage conditions, incubator (25 °C) and natural environment, were used to assess the responses of ARB and ARGs to the environmental factors. Results showed that a total of 35 and 21 ARGs were detected in biogas residue and organic manure, respectively. ARB and ARGs were enriched up to 8.01-fold in biogas residue after the 28-day storage, but varied in a narrow range during the storage of organic manure. Compared with the incubator condition, the proliferation of ARB and ARGs in biogas residue under the natural condition was relatively inhibited by the varied and complicated environmental factors. However, we found that there was no significant difference of ARB and ARGs in organic manure between the incubator and natural conditions. Bacterial community was also shifted during the storage of biogas residue, especially Bacteroidetes_VC2.1_Bac22, Aequorivita, Luteimonas and Arenimonas. Network analysis revealed that the relationship in biogas residue was much more complicated than that in organic manure, which ultimately resulted in large successions of ARB and ARGs during the short-term storage of biogas residue. Therefore, we suggest that further measures should be taken before the application of biogas residue to fields.

Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics

BACKGROUND

The expansion of renewable energy produced by windmills and photovoltaic panels has generated a considerable electricity surplus, which can be utilized in water electrolysis systems for hydrogen production. The resulting hydrogen can then be funneled to anaerobic digesters for biogas upgrading (biomethanation) purposes (power-to-methane) or to produce high value-added compounds such as short-chain fatty acids (power-to-chemicals). Genome-centric metagenomics and metatranscriptomic analyses were performed to better understand the metabolic dynamics associated with H₂ injection in two different configurations of anaerobic digesters treating acidic wastes, specifically cheese manufacturing byproducts. These approaches revealed the key-genes involved in methanation and carbon fixation pathways at species level.

RESULTS

The biogas upgrading process in the single-stage configuration increased the CH₄ content by 7%. The dominant methanogenic species responsible for the upregulation of the hydrogenotrophic pathway in this reactor was Methanothermobacter wolfeii UC0008. In the two-stage configuration, H₂ injection induced an upregulation of CO₂ fixation pathways producing short-chain fatty acids, mainly acetate and butyrate. In this configuration, the abundant species Anaerobaculum hydrogeniformans UC0046 and Defluviitoga tunisiensis UC0050 primarily upregulated genes related to electron transport chains, suggesting putative syntrophisms with hydrogen scavenger microbes. Interestingly, Tepidanaerobacter acetatoxydans UC0018 did not act as an acetate-oxidizer in either reactor configurations, and instead regulated pathways involved in acetate production and uptake. A putative syntrophic association between Coprothermobacter proteolyticus UC0011 and M. wolfeii UC0008 was proposed in the two-stage reactor. In order to support the transcriptomic findings regarding the hydrogen utilization routes, an advanced bioconversion model was adapted for the simulation of the single- and two-stage reactor setups.

CONCLUSIONS

This is the first study investigating biogas reactor metatranscriptome dynamics following hydrogen injection for biomethanation and carbon fixation to short-chain fatty acids purposes. The same microbes showed different patterns of metabolic regulation in the two reactor configurations. It was observed an effect of the specialized acidogenic reactor on the overall microbial consortium composition and activity in the two-stage digester. There were also suggested the main species responsible for methanation, short-chain fatty acids production, and electron transport chain mechanisms, in both reactor configurations.

Human gut microbe co-cultures have greater potential than monocultures for food waste remediation to commodity chemicals

Food waste represents an underutilized resource for commodity chemical generation. Constituents of the human gut microbiota that are already adapted to a food waste stream could be repurposed for useful chemical production. Industrial fermentations utilizing these microbes maintain organisms in isolation; however, microbial consortia offer an attractive alternative to monocultures in that metabolic interactions may result in more efficient processes with higher yields. Here we computationally assess the ability of co-cultures vs. monocultures to anaerobically convert a Western diet to commodity chemicals. The combination of genome-scale metabolic models with flux-balance analysis predicts that every organism analyzed can benefit from interactions with another microbe, as evidenced by increased biomass fluxes in co-culture vs. monoculture. Furthermore, microbe combinations result in emergent or increased commodity chemical production including butanol, methane, formaldehyde, propionate, hydrogen gas, and urea. These overproducing co-cultures are enriched for mutualistic and commensal interactions. Using Clostridium beijerinckii co-cultures as representative examples, models predict cross-fed metabolites will simultaneously modify multiple internal pathways, evident by different internal metabolic network structures. Differences in degree and betweenness centrality of hub precursor metabolites were correlated to C. beijerinckii metabolic outputs, and thus demonstrate the potential of co-cultures to differentially direct metabolisms to useful products.

Pseudallescheria boydii and Meyerozyma guilliermondii: behavior of deteriogenic fungi during simulated storage of diesel, biodiesel, and B10 blend in Brazil

Due to their renewable and sustainable nature, biodiesel blends boost studies predicting their stability during storage. Besides chemical degradation, biodiesel is more susceptible to biodegradation due to its raw composition. The aim of this work was to evaluate the deteriogenic potential (growth and degradation) of Pseudallescheria boydii and Meyerozyma guilliermondii in degrading pure diesel (B0), pure biodiesel (B100), and a B10 blend in mineral medium during storage. The biodeterioration susceptibility at different fuel ratios and in BH minimal mineral medium were evaluated. The biomass measurements of P. boydii during 45 days indicated higher biomass production in the B10 blend. The growth curve of M. guilliermondii showed similar growth in B10 and B100. Although there was no significant production of biosurfactant, lipase production was detected in the tributyrin agar medium of both microorganisms. The main compounds identified in the aqueous phase by GC-MS were alcohols, esters, acids, sulfur, ketones, and phenols. The results showed that P. boydii grew at the expense of fuels, degrading biodiesel esters, and diesel hydrocarbons. M. guilliermondii grew in B100 and B10; however, degradation was not detected.

Microbial community composition and diversity in rice straw digestion bioreactors with and without dairy manure

Anaerobic digestion (AD) uses a range of substrates to generate biogas, including energy crops such as globally abundant rice straw (RS). Unfortunately, RS is high in lignocellulosic material and has high to C:N ratios (~80:1), which makes it (alone) a comparatively poor substrate for AD. Co-digestion with dairy manure (DM) has been promoted as a method for balancing C:N ratios to improve RS AD whilst also treating another farm waste and co-producing a potentially useful fertiliser. However, past co-digestion studies have not directly compared RS AD microbial communities with and without DM additions, which has made it hard to assess all impacts of DM addition to RS AD processes. Here, four RS:DM ratios were contrasted in identical semi-continuous-fed AD bioreactors, and 100% RS was found to produce the highest specific methane yields (112 mL CH4/g VS/day; VS, volatile solids), which is over double yields achieved in the reactor with the highest DM content (30:70 RS:DM by mass; 48 mL CH4/g VS/day). To underpin these data, microbial communities were sequenced and characterised across the four reactors. Dominant operational taxonomic units (OTUs) in the 100% RS unit were Bacteroidetes/Firmicutes, whereas the 30:70 RS:DM unit was dominated by Proteobacteria/Spirochaetes, suggesting major microbial community shifts occur with DM additions. However, community richness was lowest with 100% RS (despite higher specific yields), suggesting particular OTUs may be more important to yields than microbial diversity. Further, ambient VFA and VS levels were significantly higher when no DM was added, suggesting DM-amended reactors may cope better with higher organic loading rates (OLR). Results show that RS AD without DM addition is feasible, although co-digestion with DM will probably allow higher OLRs, resulting in great RS throughput in farm AD units.

Interfacing nature's catalytic machinery with synthetic materials for semi-artificial photosynthesis

Semi-artificial photosynthetic systems aim to overcome the limitations of natural and artificial photosynthesis while providing an opportunity to investigate their respective functionality. The progress and studies of these hybrid systems is the focus of this forward-looking perspective. In this Review, we discuss how enzymes have been interfaced with synthetic materials and employed for semi-artificial fuel production. In parallel, we examine how more complex living cellular systems can be recruited for in vivo fuel and chemical production in an approach where inorganic nanostructures are hybridized with photosynthetic and non-photosynthetic microorganisms. Side-by-side comparisons reveal strengths and limitations of enzyme- and microorganism-based hybrid systems, and how lessons extracted from studying enzyme hybrids can be applied to investigations of microorganism-hybrid devices. We conclude by putting semi-artificial photosynthesis in the context of its own ambitions and discuss how it can help address the grand challenges facing artificial systems for the efficient generation of solar fuels and chemicals.

Anaerobic Process

A review of the literatures published in 2017 on topics relating to anaerobic process issues in the improvement of biogas production and fermentation efficiency of various kinds of organic waste. New process methodology and technology of digestion is also presented. This review is divided into the following sections: pretreatment, organic waste and co-digestion, multiple-stage process, process methodology and technology.