1
|
Konopka M, Halgreen L, Dascalu AE, Chvojka M, Valkenier H. Controlling the transmembrane transport of chloride by dynamic covalent chemistry with azines. Chem Sci 2025; 16:3509-3515. [PMID: 39877820 PMCID: PMC11770589 DOI: 10.1039/d4sc08580a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Accepted: 01/19/2025] [Indexed: 01/31/2025] Open
Abstract
Stimuli-responsive transmembrane ion transport has become a prominent area of research due to its fundamental importance in cellular processes and potential therapeutic applications. Commonly used stimuli include pH, light, and reduction or oxidation agents. This paper presents the use of dynamic covalent chemistry to activate and modulate the transmembrane transport of chloride in liposomes. An active chloride transporter was obtained in situ within the lipid bilayer by dynamic azine metathesis. The transport activity was further tuned by changing the structure of the added azines, while the dynamic covalent chemistry could be activated by lowering the pH. This dynamic covalent chemistry opens a new approach towards controlling transmembrane transport.
Collapse
Affiliation(s)
- Marcin Konopka
- Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB) Avenue F.D. Roosevelt 50, CP165/64 B-1050 Brussels Belgium
| | - Lau Halgreen
- Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB) Avenue F.D. Roosevelt 50, CP165/64 B-1050 Brussels Belgium
| | - Anca-Elena Dascalu
- Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB) Avenue F.D. Roosevelt 50, CP165/64 B-1050 Brussels Belgium
| | - Matúš Chvojka
- Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB) Avenue F.D. Roosevelt 50, CP165/64 B-1050 Brussels Belgium
- Department of Chemistry and RECETOX Faculty of Science, Masaryk University Brno 62500 Czech Republic
| | - Hennie Valkenier
- Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB) Avenue F.D. Roosevelt 50, CP165/64 B-1050 Brussels Belgium
| |
Collapse
|
2
|
Brannetti S, Gentile S, Del Grosso E, Otto S, Ricci F. Covalent Dynamic DNA Networks to Translate Multiple Inputs into Programmable Outputs. J Am Chem Soc 2025; 147:5755-5763. [PMID: 39905964 DOI: 10.1021/jacs.4c13854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2025]
Abstract
Inspired by naturally occurring protein dimerization networks, in which a set of proteins interact with each other to achieve highly complex input-output behaviors, we demonstrate here a fully synthetic DNA-based dimerization network that enables highly programmable input-output computations. Our DNA-based dimerization network consists of DNA oligonucleotide monomers modified with reactive moieties that can covalently bond with each other to form dimer outputs in an all-to-all or many-to-many fashion. By designing DNA-based input strands that can specifically sequester DNA monomers, we can control the size of the reaction network and thus fine-tune the yield of each DNA dimer output in a predictable manner. Thanks to the programmability and specificity of DNA-DNA interactions, we show that this approach can be used to control the yield of different dimer outputs using different inputs. The approach is also versatile and we demonstrate dimerization networks based on two distinct covalent reactions: thiol-disulfide and strain-promoted azide-alkyne cycloaddition (SPAAC) reactions. Finally, we show here that the DNA-based dimerization network can be used to control the yield of a functional dimer output, ultimately controlling the assembly and disassembly of DNA nanostructures. The covalent dynamic DNA networks shown here provide a way to convert multiple inputs into programmable outputs that can control a broader range of functions, including ones that mimic those of living cells.
Collapse
Affiliation(s)
- Simone Brannetti
- Department of Chemical Sciences and Technologies, University of Rome, Tor Vergata, Via della Ricerca Scientifica, Rome 00133, Italy
| | - Serena Gentile
- Department of Chemical Sciences and Technologies, University of Rome, Tor Vergata, Via della Ricerca Scientifica, Rome 00133, Italy
| | - Erica Del Grosso
- Department of Chemical Sciences and Technologies, University of Rome, Tor Vergata, Via della Ricerca Scientifica, Rome 00133, Italy
| | - Sijbren Otto
- Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Groningen 9747 AG, Netherlands
| | - Francesco Ricci
- Department of Chemical Sciences and Technologies, University of Rome, Tor Vergata, Via della Ricerca Scientifica, Rome 00133, Italy
| |
Collapse
|
3
|
Xu Z, Ying X, Li Y, Dong X, Liu J, Wang S, Little MA, Zhang D, Xie Y, Zhang Z, Yu L, Huang F, Li S. Template-directed self-assembly of porphyrin nanorings through an imine condensation reaction. Chem Sci 2025:d4sc08569h. [PMID: 39981034 PMCID: PMC11837751 DOI: 10.1039/d4sc08569h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Accepted: 02/13/2025] [Indexed: 02/22/2025] Open
Abstract
Template-directed self-assembly has proven to be an extremely effective method for the precise fabrication of biomacromolecules in natural systems, while artificial template-directed self-assembly systems for the preparation of highly intricate molecules remain a great challenge. In this article, we report the template-directed self-assembly of porphyrin nanorings with different cavity sizes from a tetraaldehyde-derived Zn(ii) porphyrin and a diamine precursor through an imine condensation reaction. Up to 9 or 18 precursor molecules self-assemble together to produce a triporphyrin nanoring and a hexaporphyrin nanoring in one step, with the assistance of a tripyridine or hexapyridine template, respectively. The imine-linked porphyrin nanorings are further modified by reduction and acylation reactions to obtain more stable nanorings. The open cavities of porphyrin rings enable them to act as effective hosts to encapsulate fullerenes (C60 and C70). This work presents a highly efficient template-directed self-assembly strategy for the construction of complicated molecules by using dynamic covalent chemistry of imine bond formation.
Collapse
Affiliation(s)
- Ziwei Xu
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Xinwen Ying
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Yi Li
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Xiaoyan Dong
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Jiyong Liu
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University Hangzhou 310027 P. R. China
| | - Shuping Wang
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Marc A Little
- Department of Chemistry and Materials Innovation Factory, University of Liverpool Liverpool L7 3NY UK
| | - Dahao Zhang
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Yongshu Xie
- Key Laboratory for Advanced Materials and Institute of Fine Chemicals, School of Chemistry and Molecular Engineering, East China University of Science & Technology Shanghai 200237 P. R. China
| | - Zibin Zhang
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Ling Yu
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| | - Feihe Huang
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University Hangzhou 310027 P. R. China
- Zhejiang-Israel Joint Laboratory of Self-Assembling Functional Materials, ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University Hangzhou 311215 P. R. China
| | - Shijun Li
- College of Material, Chemistry and Chemical Engineering, Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 311121 P. R. China
| |
Collapse
|
4
|
Iizuka K, Takezawa H, Fujita M. Host-in-Host Complexation: Activating Classical Hosts through Complete Encapsulation within an M 9L 6 Coordination Cage. Angew Chem Int Ed Engl 2025; 64:e202422143. [PMID: 39635831 DOI: 10.1002/anie.202422143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Revised: 12/04/2024] [Accepted: 12/05/2024] [Indexed: 12/07/2024]
Abstract
This study reports a method for enhancing the functions and properties of traditional organic macrocyclic hosts by fully encapsulating them within a large M9L6 cage to form host-in-host complexes. Within the cage host, the macrocyclic organic hosts with electron-rich aromatic rings, such as cyclotriveratrylene and calix[8]arene, adopt specific orientations enhancing their inherent molecular recognition abilities. Due to the high crystallinity of the M9L6 cage, the guest encapsulation behavior of the host-in-host complexes can be observed by X-ray structural analysis.
Collapse
Affiliation(s)
- Kenta Iizuka
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa, Chiba 277-0882, Japan
| | - Hiroki Takezawa
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa, Chiba 277-0882, Japan
| | - Makoto Fujita
- Tokyo Colledge, UT Institutes for Advanced Study, The University of Tokyo, Mitsui Link Lab Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa, Chiba 277-0882, Japan
- Division of Advanced Molecular Science, Institute for Molecular Science (IMS), 5-1 Higashiyama, Myodaiji, Okazaki, 444-8787, Japan
| |
Collapse
|
5
|
Welsh A, Husbands D, Frei A. High-Throughput Combinatorial Metal Complex Synthesis. Angew Chem Int Ed Engl 2025; 64:e202420204. [PMID: 39714355 DOI: 10.1002/anie.202420204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Revised: 12/17/2024] [Accepted: 12/20/2024] [Indexed: 12/24/2024]
Abstract
High-throughput combinatorial metal complex synthesis has emerged as a powerful tool for rapidly generating and screening diverse libraries of metal complexes, enabling accelerated discovery in fields such as catalysis, medicinal chemistry, and materials science. By systematically combining building blocks under mild and efficient conditions, researchers can explore broad chemical spaces, increasing the likelihood of identifying complexes with desired properties. This method streamlines hit identification and optimisation, especially when integrated with high-throughput screening and data-driven approaches like machine learning. Despite challenges such as scalability and purity control, recent advancements in automation and predictive modelling are enhancing the efficiency of combinatorial synthesis, opening new avenues for the development of metal-based catalysts, therapeutic agents, and functional materials.
Collapse
Affiliation(s)
- A Welsh
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
- Department of Chemistry, University of York, York, YO10 5DD, U.K
| | - D Husbands
- Department of Chemistry, University of York, York, YO10 5DD, U.K
| | - A Frei
- Department of Chemistry, Biochemistry & Pharmaceutical Sciences, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland
- Department of Chemistry, University of York, York, YO10 5DD, U.K
| |
Collapse
|
6
|
Dockerill M, Ford DJ, Angerani S, Alwis I, Dowman LJ, Ripoll-Rozada J, Smythe RE, Liu JST, Pereira PJB, Jackson SP, Payne RJ, Winssinger N. Development of supramolecular anticoagulants with on-demand reversibility. Nat Biotechnol 2025; 43:186-193. [PMID: 38689027 PMCID: PMC11825364 DOI: 10.1038/s41587-024-02209-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 03/14/2024] [Indexed: 05/02/2024]
Abstract
Drugs are administered at a dosing schedule set by their therapeutic index, and termination of action is achieved by clearance and metabolism of the drug. In some cases, such as anticoagulant drugs or immunotherapeutics, it is important to be able to quickly reverse the drug's action. Here, we report a general strategy to achieve on-demand reversibility by designing a supramolecular drug (a noncovalent assembly of two cooperatively interacting drug fragments held together by transient hybridization of peptide nucleic acid (PNA)) that can be reversed with a PNA antidote that outcompetes the hybridization between the fragments. We demonstrate the approach with thrombin-inhibiting anticoagulants, creating very potent and reversible bivalent direct thrombin inhibitors (Ki = 74 pM). The supramolecular inhibitor effectively inhibited thrombus formation in mice in a needle injury thrombosis model, and this activity could be reversed by administration of the PNA antidote. This design is applicable to therapeutic targets where two binding sites can be identified.
Collapse
Affiliation(s)
- Millicent Dockerill
- Department of Organic Chemistry, NCCR Chemical Biology, Faculty of Sciences, University of Geneva, Geneva, Switzerland
| | - Daniel J Ford
- School of Chemistry, The University of Sydney, Sydney, New South Wales, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales, Australia
- Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, Australia
- Heart Research Institute, Sydney, New South Wales, Australia
| | - Simona Angerani
- Department of Organic Chemistry, NCCR Chemical Biology, Faculty of Sciences, University of Geneva, Geneva, Switzerland
| | - Imala Alwis
- Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, Australia
- Heart Research Institute, Sydney, New South Wales, Australia
| | - Luke J Dowman
- School of Chemistry, The University of Sydney, Sydney, New South Wales, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Jorge Ripoll-Rozada
- Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Porto, Portugal
- Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal
| | - Rhyll E Smythe
- Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, Australia
- Heart Research Institute, Sydney, New South Wales, Australia
| | - Joanna S T Liu
- Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, Australia
- Heart Research Institute, Sydney, New South Wales, Australia
| | - Pedro José Barbosa Pereira
- Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Porto, Portugal
- Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal
| | - Shaun P Jackson
- Charles Perkins Centre, The University of Sydney, Sydney, New South Wales, Australia
- Heart Research Institute, Sydney, New South Wales, Australia
| | - Richard J Payne
- School of Chemistry, The University of Sydney, Sydney, New South Wales, Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, Sydney, New South Wales, Australia
| | - Nicolas Winssinger
- Department of Organic Chemistry, NCCR Chemical Biology, Faculty of Sciences, University of Geneva, Geneva, Switzerland.
| |
Collapse
|
7
|
Li DM, Zuo R, Wang J, Le Z. The Designs and Applications of Tetraphenylethylene Macrocycles and Cages. Chemistry 2025; 31:e202403715. [PMID: 39663182 DOI: 10.1002/chem.202403715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2024] [Revised: 12/11/2024] [Accepted: 12/11/2024] [Indexed: 12/13/2024]
Abstract
Macrocycles and cages are very attractive for the development of functional materials due to their unique inner cavities. Building blocks with interesting functions and synthetic conveniences are especially attractive. Tetraphenylethylene (TPE) is such an entity with C2 symmetry and tetrakis-functional groups easily modifiable. As a typical aggregation-induced emission (AIE) active compound, TPE perfectly unites the functions of fluorescence and structural building blocks together. The unique marriage of the two roles into one component makes TPE an ideal platform for the development of functional molecular systems including macrocycles and cages. The TPE macrocycles and cages are not merely a simple combination of those two but also generate added values unseen in either component alone. The fluorescence properties of TPE in macrocycles/cages are greatly improved or modulated, which makes them more suitable for various applications compared to their linear counterparts. In this review, the chemistry and design principles of TPE macrocycles/cages are surveyed first. The unique properties of those compounds are also discussed to provide general guidance for their functionalization. A brief discussion of their applications focusing on the utilization of their unique fluorescence is also presented. In the last, outlooks and future perspectives of TPE macrocycles/cages are provided for further developments.
Collapse
Affiliation(s)
- Dong-Mi Li
- Henan Key Laboratory of Function-Oriented Porous Materials, College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang, 471000, China
| | - Ruhai Zuo
- School of Chemistry and Chemical Engineering, Nanchang University, 999 Xuefu avenue, Nanchang, 330031, China
| | - Jinhua Wang
- School of Chemistry and Chemical Engineering, Nanchang University, 999 Xuefu avenue, Nanchang, 330031, China
| | - Zhiping Le
- School of Chemistry and Chemical Engineering, Nanchang University, 999 Xuefu avenue, Nanchang, 330031, China
| |
Collapse
|
8
|
Kozibroda B, Lehn JM, Klymchenko AS. Fluorescent Artificial Receptor for Dopamine based on Molecular Recognition-driven Dynamic Covalent Chemistry in a Lipid Nanoreactor. Angew Chem Int Ed Engl 2025:e202419905. [PMID: 39806982 DOI: 10.1002/anie.202419905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/23/2024] [Accepted: 01/10/2025] [Indexed: 01/16/2025]
Abstract
Molecular recognition and detection of small bioactive molecules, like neurotransmitters, remain a challenge for chemists, whereas nature found an elegant solution in the form of protein receptors. Here, we introduce a concept of a dynamic artificial receptor that synergically combines molecular recognition with dynamic imine bond formation inside a lipid nanoreactor, inducing a fluorescence response. The designed supramolecular system combines a lipophilic recognition ligand derived from a boronic acid, a fluorescent aldehyde based on push-pull styryl pyridine and a phenol-based catalyst. The recognition ligand specifically captures dopamine inside lipid nanodroplets and thus triggers imine bond formation with the aldehyde, producing the emission color change. The rational design of the fluorescent aldehyde, the catalyst, and the recognition ligand allows dramatic acceleration of the imine bond formation required for rapid sensing of dopamine. The nanoprobe enables dopamine detection with micromolar sensitivity and singe-nanoprobe imaging of dopamine gradients through its robust two-color ratiometric response. It displays remarkable selectivity without the interference of competing biogenic primary amines and biological media: blood serum, plasma, urine and cell lysate. The proposed concept of a dynamic artificial receptor offers a solution to the long-standing problem of molecular recognition and sensing of small molecules in complex biological media.
Collapse
Affiliation(s)
- Bohdan Kozibroda
- UMR 7021 CNRS, Laboratoire de Bioimagerie et Pathologies, ITI SysChem-Chimie des Systèmes Complexes, Université de Strasbourg, 74 route du, Rhin, 67401, Illkirch, France
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 8 allée Gaspard Monge, 67000, Strasbourg, France
| | - Andrey S Klymchenko
- UMR 7021 CNRS, Laboratoire de Bioimagerie et Pathologies, ITI SysChem-Chimie des Systèmes Complexes, Université de Strasbourg, 74 route du, Rhin, 67401, Illkirch, France
| |
Collapse
|
9
|
Gu R, Lambertsen Larsen K, Wang A, Tan J. Approaching Dynamic Behaviors of Life through Systems Chemistry. Chemistry 2025; 31:e202403083. [PMID: 39485372 DOI: 10.1002/chem.202403083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Revised: 10/20/2024] [Accepted: 10/30/2024] [Indexed: 11/03/2024]
Abstract
The intricate interplay of metabolic reactions and molecular assembly in living systems enables spatiotemporally organization and gives rise to diverse dynamic behaviors that characterize life. Over the last decades, research efforts have increasingly focused on replicating the remarkable properties and characteristics of living systems, driving the rapid growth of systems chemistry. This young discipline which generally studies interacting molecular networks and emergent system-level properties, behaviors, and functions, offers new concepts and tools to tackle the complexity of life. In this review paper, we have explored seminal research and recent advancements in recreating dynamic behaviors of life with systems chemistry. We believe that the recreation of the dynamic behaviors of life through systems chemistry would set the initial steps to obtain synthetic life de novo.
Collapse
Affiliation(s)
- Ruirui Gu
- Key Laboratory for Advanced Materials, Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, Institute of Fine Chemicals, East China University of Science and Technology, 130 Meilong Road, Shanghai, China
| | - Kim Lambertsen Larsen
- Department of Chemistry and Bioscience, Section of Chemistry Science and Engineering, Aalborg University, Fredrik Bajers Vej 7H, Aalborg Ø, Denmark
| | - Ali Wang
- Department of Chemistry, Section of Biological Chemistry, University of Copenhagen, Universitetsparken 5, København Ø, Denmark
| | - Junjun Tan
- Department of Chemistry, Section of Biological Chemistry, University of Copenhagen, Universitetsparken 5, København Ø, Denmark
| |
Collapse
|
10
|
Prusinowska N, Czapik A, Szymkowiak J, Kwit M. Thio-modified trianglimines, a novel group of chiral macrocyclic compounds of high structural dynamics. Sci Rep 2025; 15:890. [PMID: 39762350 PMCID: PMC11704344 DOI: 10.1038/s41598-025-85179-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Accepted: 01/01/2025] [Indexed: 01/11/2025] Open
Abstract
The embellishing of the macrocycle core with sulfur substituents of varied sterical requirements changes the structural dynamics of chiral, triangular polyimines. Despite their formal high symmetry, these compounds adopt diverse conformations, in which the macrocycle core represents a non-changeable unit. DFT calculations reveal that the mutual arrangement of sulfur-containing substituents is controlled mainly by sterical interactions. The presence of sulfur atoms affects the chiroptical properties of these compounds and causes a red shift of respective absorption bands compared to the basic trianglimine. Unexpectedly, the aromatic fragments attached to the sulfur atom have less impact on ECD spectra, visible only in particular spectral regions. Such a possibility to adapt various conformations is also seen in the crystalline phase; however, a stiff basic unit - the triangular macrocycle core - caused macrocycles' self-assembly into columnar-like aggregates. In the crystal lattice, around the macrocycle having bulky SCPh3 groups, a space filled with solvent is formed; however, the macrocycle's internal cavity is closed and unavailable for guest molecules. Titration of the solutions of basic SBn-substituted imine and amine macrocycles by AgOTf results in significant changes in the ECD spectra, confirming possible binding interactions between macrocycle and metal cations.
Collapse
Affiliation(s)
- Natalia Prusinowska
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznan, 61 614, Poland
| | - Agnieszka Czapik
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznan, 61 614, Poland
| | - Joanna Szymkowiak
- Faculty of Science, Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC, V6T 1Z1, Canada
| | - Marcin Kwit
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznan, 61 614, Poland.
| |
Collapse
|
11
|
Afari MNK, Heikinmäki N, Virta P, Lönnberg T. The Impact of Secondary Structure on the Base-Filling of N-Methoxy-1,3-Oxazinane (MOANA) and N-Methoxy-1,3-Oxazolidine Glycol Nucleic Acid (MOGNA) Oligonucleotides. Chembiochem 2025; 26:e202400666. [PMID: 39243158 PMCID: PMC11727013 DOI: 10.1002/cbic.202400666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 09/06/2024] [Accepted: 09/06/2024] [Indexed: 09/09/2024]
Abstract
Various single-stranded and hairpin-forming DNA and 2'-O-methyl-RNA oligonucleotides bearing a single (2R,3S)-4-(methoxyamino)butane-1,2,3-triol residue esterified from either O1 and O2 or O1 and O3 were synthesized. Incubation of these oligonucleotides with equimolar mixtures of formylmethyl derivatives of the canonical nucleobases and 2-methylbenzimidazole under mildly acidic conditions revealed base-filling of the modified site to be strongly favored by base stacking of a double-helix, especially an A-type one. In 2'-O-methyl-RNA hairpin oligonucleotides, base-filling of the (2R,3S)-4-(methoxyamino)butane-1,2,3-triol residue with nucleobase aldehydes followed the rules of Watson-Crick base pairing, thymine being the only exception. In single-stranded oligonucleotides or the Hoogsteen strand of triple helices, both the yield and selectivity of base-filling were much more modest.
Collapse
Affiliation(s)
- Mark N. K. Afari
- Department of ChemistryUniversity of TurkuHenrikinkatu 220500TurkuFinland
| | - Ninna Heikinmäki
- Department of ChemistryUniversity of TurkuHenrikinkatu 220500TurkuFinland
| | - Pasi Virta
- Department of ChemistryUniversity of TurkuHenrikinkatu 220500TurkuFinland
| | - Tuomas Lönnberg
- Department of ChemistryUniversity of TurkuHenrikinkatu 220500TurkuFinland
| |
Collapse
|
12
|
Mudgal D, Yadav N, Srivastava GK, Mishra M, Mishra V. Click Reaction Inspired Enzyme Inhibitors in Diabetes Care: An Update in the Field of Chronic Metabolic Disorder. Curr Pharm Des 2025; 31:261-291. [PMID: 39410885 DOI: 10.2174/0113816128310031240923062555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Accepted: 05/21/2024] [Indexed: 02/20/2025]
Abstract
Diabetes is a chronic metabolic disorder that impacts all age groups and affects a large population worldwide. Humans receive glucose from almost every food source, and after absorption from the gut, it reaches the liver, which functions as the distribution center for it. The insulin-responsive glucose transporter type 4 (GLUT-4) is a major carrier of glucose to the various cells (majorly expressed in myocytes, adipocytes, and cardiomyocytes) in a well-fed state. In fasting periods, the glucose supply is maintained by glycogenolysis and gluconeogenesis. In diabetes, the distribution of glucose is hampered due to several reasons. Furthermore, to treat this disorder, several drugs have been synthesized, and click chemistry plays an important role. A more recent concept for producing pharmaceuticals with a click chemistry approach makes any reaction more practical and stereospecific, along with a higher yield of products and a smaller number of by-products. This approach comprises a compiled study of the activity of numerous compelling antidiabetic drugs containing 1,2,3-triazole derivatives supported by click chemistry. In this review, we discuss the synthetic antidiabetic drugs made via click chemistry and their commendable role in improving diabetes care.
Collapse
Affiliation(s)
- Deeksha Mudgal
- Amity Institute of Click Chemistry Research and Studies, Amity University Uttar Pradesh, Noida, 201303, India
| | - Nisha Yadav
- Amity Institute of Click Chemistry Research and Studies, Amity University Uttar Pradesh, Noida, 201303, India
| | - Gaurav Kumar Srivastava
- Integrated Drug Discovery, Aragen Life Sciences Limited, Hyderabad, Telangana, 500076, India
| | - Manish Mishra
- Department of Biomedical Sciences, School of Medicine, Mercer University, Macon, GA 31207, USA
| | - Vivek Mishra
- Amity Institute of Click Chemistry Research and Studies, Amity University Uttar Pradesh, Noida, 201303, India
| |
Collapse
|
13
|
Riera MB, Salazar MO, Furlan RLE. Multilevel Dynamic System as Molecular Morning-After Timer. Chemistry 2024; 30:e202402130. [PMID: 39356247 DOI: 10.1002/chem.202402130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 08/03/2024] [Accepted: 10/02/2024] [Indexed: 10/03/2024]
Abstract
Systems chemistry aims to develop molecular systems that display emerging properties arising from their network and absent in their individual constituents. Employing reversible chemistry under thermodynamic control represents a valuable tool for generating dynamic combinatorial libraries of interconverting molecules, which may exhibit intriguing collective behaviour. A simple dynamic combinatorial library was prepared using dithioacetal/thiol/disulfide exchanges. Because of the relative reactivities of these reversible reactions, the library constitutes a two-layer dynamic system with one layer active in an acid medium (thiol/dithioacetal exchange) and one layer active in a basic medium (thiol/disulfide exchange). This property enables the system to respond to momentary changes in acidity of the medium by activating different network regions, channeling some building blocks from one layer to another through shared thiol reagents (nodes). This momentaneous change in wiring affects the final steady state composition of the library, measured the next day, even though the event that caused it vanishes without leaving any residue. Therefore, the final composition of this dynamic system provides information about this transient past perturbation in the environment such as: when it occurred, how long it was, or how intense it was.
Collapse
Affiliation(s)
- Micaela B Riera
- Facultad de Ciencias Bioquímicasy Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, 2000, Rosario, Argentina
| | - Mario O Salazar
- Facultad de Ciencias Bioquímicasy Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, 2000, Rosario, Argentina
| | - Ricardo L E Furlan
- Facultad de Ciencias Bioquímicasy Farmacéuticas, Universidad Nacional de Rosario, CONICET, Suipacha 531, 2000, Rosario, Argentina
| |
Collapse
|
14
|
Tashiro S, Yamada Y, Kringe LA, Okajima Y, Shionoya M. Intricate Low-Symmetry Ag 6L4 Capsules Formed by Anion-Templated Self-Assembly of the Stereoisomers of an Unsymmetric Ligand. J Am Chem Soc 2024; 146:34501-34509. [PMID: 39616534 DOI: 10.1021/jacs.4c11583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2024]
Abstract
Metal-organic cages and capsules exhibit space-specific functions based on their discrete hollow structures. To acquire enzyme-like asymmetric or intricate structures, they have been modified by desymmetrization with two or more different ligands. There is a need to establish new strategies that can desymmetrize structures in a simple way using only one type of ligand, which is different from the mixed-ligand approach. In this study, a strategy was developed to form interconvertible stereoisomers using the unsymmetric macrocyclic ligand benzimidazole[3]arene. Single-crystal X-ray diffraction analysis revealed that the isomers assembled with silver tetrafluoroborate afforded a conformationally heteroleptic Ag6L4 capsule with an intricate structure. The six Ag ions in the capsule were desymmetrized, resulting in significantly different coordination geometries. Remarkably, the capsule encapsulates a single tetrafluoroborate anion via multipoint C-H···F-B hydrogen bonds in both the solid and solution states, suggesting that anions of appropriate size and shape can act as a template for the capsule formation. These results demonstrate that the use of isomerizable and unsymmetric ligands is the effectiveness of constructing highly dissymmetric supramolecular structures from a single ligand.
Collapse
Affiliation(s)
- Shohei Tashiro
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yoshihiko Yamada
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Lea Antonia Kringe
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yoshiki Okajima
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Mitsuhiko Shionoya
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
- Research Institute for Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| |
Collapse
|
15
|
Liu S, Wei L, Zeng T, Jiang W, Qiu Y, Yao X, Wang Q, Zhao Y, Zhang YB. Single-Crystal Dynamic Covalent Organic Frameworks for Adaptive Guest Alignments. J Am Chem Soc 2024; 146:34053-34063. [PMID: 39614830 DOI: 10.1021/jacs.4c13377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2024]
Abstract
Dynamic 3D covalent organic frameworks (COFs) have shown a concerted structural transformation upon adaptive guest inclusion. However, the origin of the conformational mobility and the host-guest adaptivity remain conjecture of the pedal motions of revolving imine linkages, often without considering the steric hindrance from the interwoven frameworks. Here, we present atomic-level observation of the rotational and translational dynamics in single-crystal COF-300 upon adaptive guest inclusion of various organic molecules, featuring multiple rotamers of covalent linkages and switchable interframework noncovalent interactions. Specifically, we developed a diffusion gradient transimination protocol to facilitate the growth of COF single crystals, enabling a high-resolution X-ray diffraction structural analysis. We uncovered metastable and low-symmetry intermediate phases from contracted to expanded phases during structural evolution. We identified torsion angles in the terephthalaldehyde diimine motifs that switch from anti-periplanar to syn-periplanar/anticlinal conformations. Moreover, the rotational dynamics of the imine linkage were concurrent with the translational dynamics of tetraphenylmethane units, which tend to form the translational quadruple phenyl embrace. Such conformational mobility allows the frameworks to adapt to various guest molecules, such as alcohols, esters, phenols, and diols, featuring double linear, herringbone, zigzag chains, triple helix, and tubular alignments. Quantitative energy analyses revealed that such dynamic structure transformations are not arbitrary but follow specific pathways that resemble protein folding. The work is paving the way to developing robust, dynamic, and crystalline molecular sponges for studying the condensed structure of liquids without the need for further crystallization.
Collapse
Affiliation(s)
- Shan Liu
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Lei Wei
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Tengwu Zeng
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Wentao Jiang
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Yu Qiu
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Xuan Yao
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Qisheng Wang
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academic of Sciences, Shanghai 201210, China
| | - Yingbo Zhao
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Yue-Biao Zhang
- School of Physical Science and Technology, Shanghai Key Laboratory of High-Resolution Electron Microscopy, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| |
Collapse
|
16
|
Zeroug-Metz L, Lee S. Biodynamers: applications of dynamic covalent chemistry in single-chain polymer nanoparticles. Drug Deliv Transl Res 2024; 14:3599-3607. [PMID: 39009930 PMCID: PMC11499429 DOI: 10.1007/s13346-024-01665-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/30/2024] [Indexed: 07/17/2024]
Abstract
Dynamic Covalent Chemistry (DCC) enables the development of responsive molecular systems through the integration of reversible bonds at the molecular level. These systems are thermodynamically stable and capable of undergoing various molecular assemblies and transformations, allowing them to adapt to changes in environmental conditions like temperature and pH. Introducing DCC into the field of polymer science has led to the design of Single-Chain Nanoparticles (SCNPs), which are formed by self-folding via intramolecular crosslinking mechanisms. Defined by their adaptability, SCNPs mimic biopolymers in size and functionality. Biodynamers, a subclass of SCNPs, are specifically designed for their stimuli-responsive and tunable, dynamic properties. Mimicking complex biological structures, their scope of application includes target-specific and pH-responsive drug delivery, enhanced cellular uptake and endosomal escape. In this manuscript, we discuss the integration of DCC for the design of SCNPs, focusing particularly on the characteristics of biodynamers and their biomedical and pharmaceutical applications. By underlining their potential, we highlight the factors driving the growing interest in SCNPs, providing an overview of recent developments and future perspectives in this research field.
Collapse
Affiliation(s)
- Lena Zeroug-Metz
- Department of Pharmacy, Saarland University, Campus C 4.1, 66123, Saarbrücken, Germany
| | - Sangeun Lee
- Department of Pharmacy, Saarland University, Campus C 4.1, 66123, Saarbrücken, Germany.
- Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI), Campus E 8.1, 66123, Saarbrücken, Germany.
| |
Collapse
|
17
|
Jadhav T, Dhokale B, Saeed ZM, Hadjichristidis N, Mohamed S. Dynamic Covalent Chemistry of Enamine-Ones: Exploring Tunable Reactivity in Vitrimeric Polymers and Covalent Organic Frameworks. CHEMSUSCHEM 2024; 17:e202400356. [PMID: 38842466 PMCID: PMC11587689 DOI: 10.1002/cssc.202400356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 06/05/2024] [Accepted: 06/05/2024] [Indexed: 06/07/2024]
Abstract
Dynamic covalent chemistry (DCC) has revolutionized the field of polymer science by offering new opportunities for the synthesis, processability, and recyclability of polymers as well as in the development of new materials with interesting properties such as vitrimers and covalent organic frameworks (COFs). Many DCC linkages have been explored for this purpose, but recently, enamine-ones have proven to be promising dynamic linkages because of their facile reversible transamination reactions under thermodynamic control. Their high stability, stimuli-responsive properties, and tunable kinetics make them promising dynamic cross-linkers in network polymers. Given the rapid developments in the field in recent years, this review provides a critical and up-to-date overview of recent developments in enamine-one chemistry, including factors that control their dynamics. The focus of the review will be on the utility of enamine-ones in designing a variety of processable and self-healable polymers with important applications in vitrimers and recyclable closed-loop polymers. The use of enamine-one linkages in crystalline polymers, known as COFs and their applications are also summarized. Finally, we provide an outlook for future developments in this field.
Collapse
Affiliation(s)
- Thaksen Jadhav
- Department of ChemistryGreen Chemistry & Materials Modelling LaboratoryKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
- Center for Catalysis and SeparationsKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
| | - Bhausaheb Dhokale
- Department of ChemistryGreen Chemistry & Materials Modelling LaboratoryKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
- Department of ChemistryUniversity of WyomingLaramieWyoming 82071United States of America
| | - Zeinab M. Saeed
- Department of ChemistryGreen Chemistry & Materials Modelling LaboratoryKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
- Center for Catalysis and SeparationsKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
| | - Nikos Hadjichristidis
- Chemistry ProgramKAUST Catalysis CenterPhysical Sciences and Engineering DivisionKing Abdullah University of Science and Technology (KAUST)Thuwal23955Saudi Arabia
| | - Sharmarke Mohamed
- Department of ChemistryGreen Chemistry & Materials Modelling LaboratoryKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
- Center for Catalysis and SeparationsKhalifa University of Science and TechnologyPO BoxAbu Dhabi127788United Arab Emirates
| |
Collapse
|
18
|
Díaz-Casado L, Mann E, Jiménez-Moreno E, Villacampa A, Montalvillo-Jiménez L, Sánchez-García C, Corzana F, Jiménez-Barbero J, Gómez AM, Santana A, Asensio JL. Opposed Aromatic Surfaces Behave as Independent Binding Sites for Carbohydrate Stacking: Analysis of Sandwich-like CH/π/CH Complexes. JACS AU 2024; 4:4466-4473. [PMID: 39610730 PMCID: PMC11600182 DOI: 10.1021/jacsau.4c00795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 10/02/2024] [Accepted: 10/04/2024] [Indexed: 11/30/2024]
Abstract
CH/π bonds are versatile elements for the construction of complex molecular architectures, thus playing key roles in many biomolecular recognition processes. Although seldom acknowledged, aromatic units are inherently bivalent and can participate in CH/π bonds through either face simultaneously, leading to the formation of ternary stacking complexes. This sandwich-like arrangement is by far the most common in natural complexes and could potentially lead to negative cooperativity due to unfavorable polarization or electrostatic effects, especially when polarized CH fragments are involved. To evaluate the energetics of such interaction modes, we selected a biologically relevant model, carbohydrate/aromatic stacking, and conducted an experimental analysis comparing binary CH/π interactions to ternary CH/π/CH stacking. Our approach utilized a dynamic combinatorial strategy, which is well-suited to reveal minor stability differences among aromatic complexes. Our results showed that carbohydrate/aromatic stacking is relatively insensitive to molecular recognition events occurring on the opposite side of the aromatic platform, whether exposed to water or involved in additional CH/π contacts, with free energy fluctuations lower than 10%. Based on these data, for all practical purposes, the two opposing aromatic surfaces can be considered independent, noninteracting binding sites, making aromatic platforms optimal connecting elements for supramolecular cross-linking.
Collapse
Affiliation(s)
- Laura Díaz-Casado
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Enrique Mann
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Ester Jiménez-Moreno
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Alejandro Villacampa
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | | | - Claudia Sánchez-García
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Francisco Corzana
- Dept.
Química and Centro de Investigación en Síntesis
Química, Universidad de La Rioja, 26006 La Rioja, Spain
| | - Jesús Jiménez-Barbero
- Center
for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) , 48160 Derio, Bizkaia ,Spain
- Ikerbasque,
Basque Foundation for Science, 48009 Bilbao, Spain
- Centro
de Investigacion Biomedica En Red de Enfermedades Respiratorias, 28029 Madrid, Spain
| | - Ana María Gómez
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Andrés
G. Santana
- Instituto
de Productos Naturales y Agrobiología (IPNA-CSIC), Av. Astrofísico Fco. Sánchez
3, 38206 San Cristobal
de la Laguna, Tenerife ,Spain
| | - Juan Luis Asensio
- Instituto
de Química Orgánica General (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| |
Collapse
|
19
|
Malcolmson SJ. Catalysis-enabled amine sorting. Nat Chem 2024:10.1038/s41557-024-01676-w. [PMID: 39558139 DOI: 10.1038/s41557-024-01676-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2024]
|
20
|
Wang YH, Tong KW, Xiong SR, Chen CQ, Song YH, Yang P. Steerable Structural Evolvement and Adsorption Behavior of Metastable Polyoxovanadate-Based Metal-Organic Polyhedra. Inorg Chem 2024; 63:20984-20992. [PMID: 39441664 DOI: 10.1021/acs.inorgchem.4c02394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2024]
Abstract
Promoting the advancement of the structure and function of metastable substances is challenging but worthwhile. In particular, how to harness the entangled state and evolution path of labile porous structures has been at the forefront of research in molecular self-assembly. In this work, the metastable structures of polyoxovanadate-based metal-organic polyhedra (VMOPs) can be manually regulated, including separation of the interlocked aggregate by a ligand-widening approach as well as transformation from a tetrahedral to capsule-like scaffold via a vertice-remodeling strategy. In these processes, intra- and intermolecular π···π and C-H···π interactions have been recognized as the primary driving forces. Besides being responsible for commanding the structural evolvement of VMOPs, such weak interactions were able to program their spatial arrangements and hence the adsorption performances for dye and iodine. The successful use of such a weak force-dominated design concept beacons a feasible route for customization of the function-oriented metastable structures. Separation and transformation of the interlocked metastable VMOPs have been achieved via the respective ligand-widening approach and vertice-remodeling strategy. Not only their structures but also adsorption features could be well regulated by such a weak force-dominated design concept.
Collapse
Affiliation(s)
- Yan-Hu Wang
- College of Chemistry and Chemical Engineering, Advanced Catalytic Engineering Research Center of the Ministry of Education, Hunan University, Changsha 410082, P. R. China
| | - Ke-Wei Tong
- College of Chemistry and Chemical Engineering, Advanced Catalytic Engineering Research Center of the Ministry of Education, Hunan University, Changsha 410082, P. R. China
| | - Shi-Ru Xiong
- College of Chemistry and Chemical Engineering, Advanced Catalytic Engineering Research Center of the Ministry of Education, Hunan University, Changsha 410082, P. R. China
| | - Chao-Qin Chen
- College of Chemistry and Chemical Engineering, Advanced Catalytic Engineering Research Center of the Ministry of Education, Hunan University, Changsha 410082, P. R. China
| | - Yue-Hong Song
- Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, College of Chemical Engineering and Modern Materials, Shangluo University, Shangluo 726000, P. R. China
| | - Peng Yang
- College of Chemistry and Chemical Engineering, Advanced Catalytic Engineering Research Center of the Ministry of Education, Hunan University, Changsha 410082, P. R. China
| |
Collapse
|
21
|
Hu Y, Willner I. Oligo-Adenine Derived Secondary Nucleic Acid Frameworks: From Structural Characteristics to Applications. Angew Chem Int Ed Engl 2024; 63:e202412106. [PMID: 39183707 DOI: 10.1002/anie.202412106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 08/19/2024] [Accepted: 08/20/2024] [Indexed: 08/27/2024]
Abstract
Oligo-adenine (polyA) is primarily known for its critical role in mRNA stability, translational status, and gene regulation. Beyond its biological functions, extensive research has unveiled the diverse applications of polyA. In response to environmental stimuli, single polyA strands undergo distinctive structural transitions into diverse secondary configurations, which are reversible upon the introduction of appropriate counter-triggers. In this review, we systematically summarize recent advances of noncanonical structures derived from polyA, including A-motif duplex, A-cyanuric acid triplex, A-coralyne-A duplex, and T ⋅ A-T triplex. The structural characteristics and mechanisms underlying these conformations under specific external stimuli are addressed, followed by examples of their applications in stimuli-responsive DNA hydrogels, supramolecular fibre assembly, molecular electronics and switches, biosensing and bioengineering, payloads encapsulation and release, and others. A detailed comparison of these polyA-derived noncanonical structures is provided, highlighting their distinctive features. Furthermore, by integrating their stimuli-responsiveness and conformational characteristics, advanced material development, such as pH-cascaded DNA hydrogels and supramolecular fibres exhibiting dynamic structural transitions adapting environmental cues, are introduced. An outlook for future developments is also discussed. These polyA derived, stimuli-responsive, noncanonical structures enrich the arsenal of DNA "toolbox", offering dynamic DNA frameworks for diverse future applications.
Collapse
Affiliation(s)
- Yuwei Hu
- Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR), 2 Fusionopolis Way, Innovis #08-03, 138634, Singapore, Republic of Singapore
| | - Itamar Willner
- Institute of Chemistry, The Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, 91904, Jerusalem, Israel
| |
Collapse
|
22
|
Wang LS, Xiang JC, Wu AX. Advances in the self-organized total synthesis of natural products. Chem Commun (Camb) 2024; 60:12803-12815. [PMID: 39377098 DOI: 10.1039/d4cc04288c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/09/2024]
Abstract
Natural product total synthesis has trailblazed in the era of multistep synthesis. The strategic application of existing synthetic methodologies and the stepwise construction that revolves around newly developed, tailored key steps, are two basic tactics in the principle of classic retrosynthetic analysis. However, a new synthetic model, termed self-organized total synthesis, has emerged in recent years, enabling the rapid creation of specific natural products by a one-pot reaction. Distinct from conventional analysis associated with certain bond disconnections, the design of self-organized total synthesis focuses on seeking a series of self-organized reaction sequences which can be integrated compatibly under a uniform condition, therefore allowing the entire sequence to proceed in one pot, and most importantly, starting from commercially available feedstocks or biomass materials. Whilst dauntingly challenging, this synthetic strategy is more consistent with the biogenetic pathway of natural products compared with conventional counterparts, and will hopefully provide the shortest synthesis for such natural products. Through this rational analysis, one-pot total synthesis is no longer in the way of serendipity but can be precisely designed and manipulated. In this review, we account for the definition, delimitation, and categorization of self-organized total synthesis and then elucidate a comprehensive understanding of this synthetic strategy based on our intensive explorations. We also highlight the contributions of other research groups in this growing field and anticipate that it will give rise to advancing new methodologies, as well as new concepts within organic synthesis.
Collapse
Affiliation(s)
- Li-Sheng Wang
- State Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
| | - Jia-Chen Xiang
- School of Chemistry and Chemical Engineering, Southeast University, Nanjing 211189, P. R. China.
| | - An-Xin Wu
- State Key Laboratory of Green Pesticide, International Joint Research Center for Intelligent Biosensor Technology and Health, College of Chemistry, Central China Normal University, Wuhan 430079, P. R. China.
- State Key Laboratory of Applied Organic Chemistry, Lanzhou University, Lanzhou 730000, P. R. China
| |
Collapse
|
23
|
Lyu Y, Hu Y, Yang J, Wang X, Li J. Mutualistic Synthesis from Orthogonal Dynamic Covalent Reactions. Angew Chem Int Ed Engl 2024; 63:e202412020. [PMID: 38993096 DOI: 10.1002/anie.202412020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 07/11/2024] [Indexed: 07/13/2024]
Abstract
Mutualisms are interactions that benefit all species involved. It has been widely investigated in neighbouring subjects, such as biology, ecology, sociology, and economics. However, such a reciprocal relationship in synthetic chemical systems has rarely been studied. Here, we demonstrate a mutualistic synthesis where byproducts from two orthogonal chemical reactions aid each other's production. Disulfide exchange and hydrazone exchange were chosen to generate two dynamic combinatorial libraries. A minor tetrameric macrocycle from the active disulfide library was quantitatively amplified in the presence of the hydrazone library. This incorporation also turned on the previously inert hydrazone reaction, producing a linear species that formed a "handcuffs" catenane with the disulfide tetramer. These findings not only lend robust support to the hypothesis of "RNA-peptide coevolution" for the origin of life but also broaden the scope of synthetic chemistry, highlighting the untapped potential of minor products from different reactions. Additionally, the co-self-assembly of these mutualistic entities to form supramolecular structures opens new avenues for future development of composite nanosystems with synergistic properties.
Collapse
Affiliation(s)
- Yonglei Lyu
- MediCity Research Laboratory, University of Turku, Tykistökatu 6, 20520, Turku, Finland
- Department of Chemistry, University of Turku, Henrikinkatu 2, Aurum, 20500, Turku, Finland
| | - Ying Hu
- Department of Chemistry, China Pharmaceutical University, Nanjing, 211198, Jiangsu province, P. R. China
| | - Jinghui Yang
- MediCity Research Laboratory, University of Turku, Tykistökatu 6, 20520, Turku, Finland
- Department of Chemistry, University of Turku, Henrikinkatu 2, Aurum, 20500, Turku, Finland
| | - Xin Wang
- MediCity Research Laboratory, University of Turku, Tykistökatu 6, 20520, Turku, Finland
- Department of Chemistry, University of Turku, Henrikinkatu 2, Aurum, 20500, Turku, Finland
| | - Jianwei Li
- MediCity Research Laboratory, University of Turku, Tykistökatu 6, 20520, Turku, Finland
| |
Collapse
|
24
|
Xu C, Sun N, Li H, Han X, Zhang A, Sun P. Stimuli-Responsive Vesicles and Hydrogels Formed by a Single-Tailed Dynamic Covalent Surfactant in Aqueous Solutions. Molecules 2024; 29:4984. [PMID: 39519626 PMCID: PMC11547677 DOI: 10.3390/molecules29214984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Revised: 10/04/2024] [Accepted: 10/19/2024] [Indexed: 11/16/2024] Open
Abstract
Controlling the hierarchical self-assembly of surfactants in aqueous solutions has drawn much attention due to their broad range of applications, from targeted drug release, preparation of smart material, to biocatalysis. However, the synthetic procedures for surfactants with stimuli-responsive hydrophobic chains are complicated, which restricts the development of surfactants. Herein, a novel single-tailed responsive surfactant, 1-methyl-3-(2-(4-((tetradecylimino) methyl) phenoxy) ethyl)-3-imidazolium bromides (C14PMimBr), was facilely fabricated in situ by simply mixing an aldehyde-functionalized imidazolium cation (3-(2-(4-formylphenoxy) ethyl)-1-methyl imidazolium bromide, BAMimBr) and aliphatic amine (tetradecylamine, TDA) through dynamic imine bonding. With increasing concentration, micelles, vesicles, and hydrogels were spontaneously formed by the hierarchical self-assembly of C14PMimBr in aqueous solutions without any additives. The morphologies of vesicles and hydrogels were characterized by cryogenic transmission electron microscopy and scanning electron microscopy. The mechanical properties and microstructure information of hydrogels were demonstrated by rheological measurement, X-ray diffraction, and density functional theory calculation. In addition, the vesicles could be disassembled and reassembled with the breakage and reformation of imine bonds by adding acid/bubbling CO2 and adding alkali. This work provides a simple method for constructing stimuli-responsive surfactant systems and shows great potential application in targeted drug release, drug delivery, and intelligent materials.
Collapse
Affiliation(s)
- Chunlin Xu
- School of Bioscience and Technology, Shandong Second Medical University, Weifang 261053, China; (C.X.); (H.L.); (X.H.)
| | - Na Sun
- College of Pharmacy, Shandong Second Medical University, Weifang 261053, China;
| | - Huaixiu Li
- School of Bioscience and Technology, Shandong Second Medical University, Weifang 261053, China; (C.X.); (H.L.); (X.H.)
| | - Xingchen Han
- School of Bioscience and Technology, Shandong Second Medical University, Weifang 261053, China; (C.X.); (H.L.); (X.H.)
| | - Ailing Zhang
- College of Chemical Engineering and Environmental Chemistry, Weifang University, Weifang 261061, China
| | - Panpan Sun
- School of Bioscience and Technology, Shandong Second Medical University, Weifang 261053, China; (C.X.); (H.L.); (X.H.)
| |
Collapse
|
25
|
Ousaka N, MacLachlan MJ, Akine S. Redox-Triggered Reversible Switching between Dynamic and Quasi-static α-Helical Peptides. Chemistry 2024; 30:e202402704. [PMID: 39023308 DOI: 10.1002/chem.202402704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 07/17/2024] [Accepted: 07/18/2024] [Indexed: 07/20/2024]
Abstract
We report the reversible transformation between a singly stapled dynamic α-helical peptide and a doubly stapled quasi-static one through redox-triggered dithiol/disulfide conversions of a stapling moiety. This process allows the rate of interconversion between the right-handed (P) and left-handed (M) α-helices to be altered by a factor of approximately 103 before and after the transformation. An as-obtained doubly stapled α-helical peptide, which is composed of an achiral peptide having an l-valine carboxylic acid residue at the C-terminus, a disulfide-based reversible staple, and a biphenyl-based fixed staple, adopts an (M)-rich form as a kinetically trapped state. The (M)-rich helix was subsequently transformed into the thermodynamically stable (P)-rich form in 1,1,2,2-tetrachloroethane with the half-life time (t1/2) of approximately 44 days at 25 °C. Reduction of the doubly stapled peptide with tri-n-butylphosphine in tetrahydrofuran/water (10/1, v/v) produced the corresponding singly stapled dynamic α-helical peptide bearing two thiol groups at the side chains, which underwent solvent-induced reversible helicity inversion. The resulting dithiol of the singly stapled peptide could be reoxidized to form the original doubly stapled form using 4,4'-dithiodipyridine. Furthermore, the P/M interconversion of a doubly stapled peptide with two flexible hydrocarbon-based staples is considerably more rapid than that with more rigid staples.
Collapse
Affiliation(s)
- Naoki Ousaka
- Nano Life Science Institute (WPI-NanoLSI), Kakuma-machi, Kanazawa University, 920-1192, Kanazawa, Japan
- Research Center for Negative Emissions Technologies, Kyushu University, 819-0395, Fukuoka, Japan
| | - Mark J MacLachlan
- Nano Life Science Institute (WPI-NanoLSI), Kakuma-machi, Kanazawa University, 920-1192, Kanazawa, Japan
- Department of Chemistry, University of British Columbia, 2036 Main Mall, V6T 1Z1, Vancouver, BC, Canada
- Quantum Matter Institute, University of British Columbia, 2355 East Mall, V6T 1Z4, Vancouver, BC, Canada
| | - Shigehisa Akine
- Nano Life Science Institute (WPI-NanoLSI), Kakuma-machi, Kanazawa University, 920-1192, Kanazawa, Japan
- Graduate School of Natural Science and Technology, Kanazawa University, 920-1192, Kanazawa, Japan
| |
Collapse
|
26
|
Ouyang Y, Zhang P, Willner I. DNA Tetrahedra as Functional Nanostructures: From Basic Principles to Applications. Angew Chem Int Ed Engl 2024; 63:e202411118. [PMID: 39037936 DOI: 10.1002/anie.202411118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/22/2024] [Accepted: 07/22/2024] [Indexed: 07/24/2024]
Abstract
Self-assembled supramolecular DNA tetrahedra composed of programmed sequence-engineered complementary base-paired strands represent elusive nanostructures having key contributions to the development and diverse applications of DNA nanotechnology. By appropriate engineering of the strands, DNA tetrahedra of tuneable sizes and chemical functionalities were designed. Programmed functionalities for diverse applications were integrated into tetrahedra structures including sequence-specific recognition strands (aptamers), catalytic DNAzymes, nanoparticles, proteins, or fluorophore. The article presents a comprehensive review addressing methods to assemble and characterize the DNA tetrahedra nanostructures, and diverse applications of DNA tetrahedra framework are discussed. Topics being addressed include the application of structurally functionalized DNA tetrahedra nanostructure for the assembly of diverse optical or electrochemical sensing platforms and functionalized intracellular sensing and imaging modules. In addition, the triggered reconfiguration of DNA tetrahedra nanostructures and dynamic networks and circuits emulating biological transformations are introduced. Moreover, the functionalization of DNA tetrahedra frameworks with nanoparticles provides building units for the assembly of optical devices and for the programmed crystallization of nanoparticle superlattices. Finally, diverse applications of DNA tetrahedra in the field of nanomedicine are addressed. These include the DNA tetrahedra-assisted permeation of nanocarriers into cells for imaging, controlled drug release, active chemodynamic/photodynamic treatment of target tissues, and regenerative medicine.
Collapse
Affiliation(s)
- Yu Ouyang
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| | - Pu Zhang
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
- Current address: Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing, 400715, P.R. China
| | - Itamar Willner
- Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, 91904, Israel
| |
Collapse
|
27
|
Di Adamo J, Ollivier N, Cantel S, Diemer V, Melnyk O. Peptide Alkyl Thioester Synthesis from Advanced Thiols and Peptide Hydrazides. J Org Chem 2024; 89:13719-13724. [PMID: 39257180 DOI: 10.1021/acs.joc.4c01251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]
Abstract
Peptide alkyl thioesters are versatile reagents in various synthetic applications, commonly generated from peptide hydrazides and thiols. However, a notable limitation is the need for a substantial excess of the thiol reagent, restricting the usage to simple thiols. Here, we introduce an adapted procedure that significantly enhances thioester production with just a minimal thiol excess, facilitating the use of advanced thiol nucleophiles.
Collapse
Affiliation(s)
- Julie Di Adamo
- Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, Lille F-59000, France
| | - Nathalie Ollivier
- Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, Lille F-59000, France
| | - Sonia Cantel
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247, Université de Montpellier, CNRS, ENSCM, Montpellier 34090, France
| | - Vincent Diemer
- Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, Lille F-59000, France
| | - Oleg Melnyk
- Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 9017 - CIIL - Center for Infection and Immunity of Lille, Lille F-59000, France
| |
Collapse
|
28
|
Gahlot S, Schmitt JL, Chevalier A, Villa M, Roy M, Ceroni P, Lehn JM, Gingras M. "The Sulfur Dance" Around Arenes and Heteroarenes - the Reversible Nature of Nucleophilic Aromatic Substitutions. Chemistry 2024; 30:e202400231. [PMID: 38289151 DOI: 10.1002/chem.202400231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Indexed: 02/20/2024]
Abstract
We disclose the features of a category of reversible nucleophilic aromatic substitutions in view of their significance and generality in dynamic aromatic chemistry. Exchange of sulfur components surrounding arenes and heteroarenes may occur at 25 °C, in a process that one may call a "sulfur dance". These SNAr systems present their own features, apart from common reversible reactions utilized in dynamic covalent chemistry (DCC). By varying conditions, covalent dynamics may operate to provide libraries of thiaarenes with some selectivity, or conversion of a hexa(thio)benzene asterisk into another one. The reversible nature of SNAr is confirmed by three methods: a convergence of the products distribution in reversible SNAr systems, a related product redistribution between two per(thio)benzenes by using a thiolate promoter, and from kinetic/thermodynamic data. A four-component dynamic covalent system further illustrates the thermodynamically-driven formation of a thiacalix[2]arene[2]pyrimidine by sulfur component exchanges. This work stimulates the implementation of reversible SNAr in aromatic chemistry and in DCC.
Collapse
Affiliation(s)
- Sapna Gahlot
- Aix Marseille Univ, CNRS, CINaM, 13288, Marseille, France
| | - Jean-Louis Schmitt
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS), CNRS UMR 7006, Université de Strasbourg, 8 allée Gaspard Monge, BP 70028, 67083, Strasbourg Cedex, France
| | - Aline Chevalier
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS), CNRS UMR 7006, Université de Strasbourg, 8 allée Gaspard Monge, BP 70028, 67083, Strasbourg Cedex, France
| | - Marco Villa
- Aix Marseille Univ, CNRS, CINaM, 13288, Marseille, France
- Department of Chemistry ("Giacomo Ciamician"), University of Bologna, Via Selmi, 2, 40126, Bologna, Italy
| | - Myriam Roy
- Aix Marseille Univ, CNRS, CINaM, 13288, Marseille, France
- Institut Parisien de Chimie Moléculaire, Sorbonne Université, 75005, Paris, France
| | - Paola Ceroni
- Department of Chemistry ("Giacomo Ciamician"), University of Bologna, Via Selmi, 2, 40126, Bologna, Italy
| | - Jean-Marie Lehn
- Institut de Science et d'Ingénierie Supramoléculaires (ISIS), CNRS UMR 7006, Université de Strasbourg, 8 allée Gaspard Monge, BP 70028, 67083, Strasbourg Cedex, France
| | - Marc Gingras
- Aix Marseille Univ, CNRS, CINaM, 13288, Marseille, France
| |
Collapse
|
29
|
Alfonso I. Supramolecular chemical biology: designed receptors and dynamic chemical systems. Chem Commun (Camb) 2024; 60:9692-9703. [PMID: 39129537 DOI: 10.1039/d4cc03163f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
Abstract
Supramolecular chemistry focuses on the study of species joined by non-covalent interactions, and therefore on dynamic and relatively ill-defined structures. Despite being a well-developed field, it has to face important challenges when dealing with the selective recognition of biomolecules in highly competitive biomimetic media. However, supramolecular interactions reside at the core of chemical biology systems, since many processes in nature are governed by weak, non-covalent, strongly dynamic contacts. Therefore, there is a natural connection between these two research fields, which are not frequently related or share interests. In this feature article, I will highlight our most recent results in the molecular recognition of biologically relevant species, following different conceptual approaches from the most conventional design of elaborated receptors to the less popular dynamic combinatorial chemistry methodology. Selected illustrative examples from other groups will be also included. The discussion has been focused mainly on systems with potential biomedical applications.
Collapse
Affiliation(s)
- Ignacio Alfonso
- Department of Biological Chemistry, Institute for Advanced Chemistry of Catalonia (IQAC), The Spanish National Research Council (CSIC), Jordi Girona 18-26, 08034, Barcelona, Spain.
| |
Collapse
|
30
|
Scholes AM, Kershaw Cook LJ, Szczypiński FT, Luzyanin KV, Egleston BD, Greenaway RL, Slater AG. Dynamic and solid-state behaviour of bromoisotrianglimine. Chem Sci 2024; 15:d4sc04207g. [PMID: 39149217 PMCID: PMC11320023 DOI: 10.1039/d4sc04207g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 07/28/2024] [Indexed: 08/17/2024] Open
Abstract
Solid-state materials formed from discrete imine macrocycles have potential in industrial separations, but dynamic behaviour during both synthesis and crystallisation makes them challenging to exploit. Here, we explore opportunities for structural control by investigating the dynamic nature of a C-5 brominated isotrianglimine in solution and under crystallisation conditions. In solution, the equilibrium between the [3 + 3] and the less reported [2 + 2] macrocycle was investigated, and both macrocycles were fully characterised. Solvent templating during crystallisation was used to form new packing motifs for the [3 + 3] macrocycle and a previously unreported [4 + 4] macrocycle. Finally, chiral self-sorting was used to demonstrate how crystallisation conditions can not only influence packing arrangements but also shift the macrocycle equilibrium to yield new structures. This work thus exemplifies three strategies for exploiting dynamic behaviour to form isotrianglimine materials, and highlights the importance of understanding the dynamic behaviour of a system when designing and crystallising functional materials formed using dynamic covalent chemistry.
Collapse
Affiliation(s)
- Abbie M Scholes
- Department of Chemistry and Materials Innovation Factory, School of Physical Sciences, University of Liverpool UK
| | - Laurence J Kershaw Cook
- Department of Chemistry and Materials Innovation Factory, School of Physical Sciences, University of Liverpool UK
| | - Filip T Szczypiński
- Department of Chemistry and Materials Innovation Factory, School of Physical Sciences, University of Liverpool UK
| | - Konstantin V Luzyanin
- Department of Chemistry and Materials Innovation Factory, School of Physical Sciences, University of Liverpool UK
| | - Benjamin D Egleston
- Department of Chemistry, Molecular Sciences Research Hub Imperial College London London UK
| | - Rebecca L Greenaway
- Department of Chemistry, Molecular Sciences Research Hub Imperial College London London UK
| | - Anna G Slater
- Department of Chemistry and Materials Innovation Factory, School of Physical Sciences, University of Liverpool UK
| |
Collapse
|
31
|
Hu J, Launay JP, Chaumont A, Heitz V, Jacquot de Rouville HP. Self-Assembled Bis-Acridinium Tweezer Equilibria Controlled by Multi-Responsive Properties. Chemistry 2024; 30:e202401866. [PMID: 38780863 DOI: 10.1002/chem.202401866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 05/23/2024] [Accepted: 05/23/2024] [Indexed: 05/25/2024]
Abstract
Protonated and methylated bis-acridinium tweezers built around a 2,6-diphenylpyridyl and an electron enriched 2,6-di(p-anisyl)pyridyl spacer have been synthesized. These tweezers can self-assemble in their corresponding homodimers and the associated thermodynamic parameters have been probed in organic solvents. The switching properties of the tweezers have been exploited in biphasic transfer experiments showing the shift of the equilibria towards the homodimers. Moreover, the thermodynamic parameters of the formation of the reduced methylated homodimers investigated by electrochemical experiments revealed the dissociation of the dimers. Thus, in addition to solvent and temperature, the pH and redox responsiveness of the acridinium units of the tweezers make it possible to modulate to a larger extent the monomer-dimer equilibria.
Collapse
Affiliation(s)
- Johnny Hu
- LSAMM, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Jean-Pierre Launay
- CEMES-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, 31055, Toulouse, France
| | - Alain Chaumont
- Chimie de la Matière Complexe, CNRS UMR 7140, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Valérie Heitz
- LSAMM, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| | - Henri-Pierre Jacquot de Rouville
- LSAMM, Institut de Chimie de Strasbourg, CNRS UMR 7177, Université de Strasbourg, 4, rue Blaise Pascal, 67000, Strasbourg, France
| |
Collapse
|
32
|
Kriebisch CME, Burger L, Zozulia O, Stasi M, Floroni A, Braun D, Gerland U, Boekhoven J. Template-based copying in chemically fuelled dynamic combinatorial libraries. Nat Chem 2024; 16:1240-1249. [PMID: 39014158 PMCID: PMC11321992 DOI: 10.1038/s41557-024-01570-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Accepted: 06/06/2024] [Indexed: 07/18/2024]
Abstract
One of science's greatest challenges is determining how life can spontaneously emerge from a mixture of molecules. A complicating factor is that life and its molecules are inherently unstable-RNA and proteins are prone to hydrolysis and denaturation. For the de novo synthesis of life or to better understand its emergence at its origin, selection mechanisms are needed for unstable molecules. Here we present a chemically fuelled dynamic combinatorial library to model RNA oligomerization and deoligomerization and shine new light on selection and purification mechanisms under kinetic control. In the experiments, oligomers can only be sustained by continuous production. Hybridization is a powerful tool for selecting unstable molecules, offering feedback on oligomerization and deoligomerization rates. Moreover, we find that templation can be used to purify libraries of oligomers. In addition, template-assisted formation of oligomers within coacervate-based protocells changes its compartment's physical properties, such as their ability to fuse. Such reciprocal coupling between oligomer production and physical properties is a key step towards synthetic life.
Collapse
Affiliation(s)
- Christine M E Kriebisch
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany
| | - Ludwig Burger
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany
| | - Oleksii Zozulia
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany
| | - Michele Stasi
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany
| | - Alexander Floroni
- Systems Biophysics Center for Nano-Science and Origins Cluster Initiative, Department of Physics, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Dieter Braun
- Systems Biophysics Center for Nano-Science and Origins Cluster Initiative, Department of Physics, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Ulrich Gerland
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany
| | - Job Boekhoven
- School of Natural Sciences, Department of Bioscience, Technical University of Munich, Garching, Germany.
| |
Collapse
|
33
|
Fan Y, Feng R, Zhang X, Wang ZL, Xiong F, Zhang S, Zhong ZF, Yu H, Zhang QW, Zhang Z, Wang Y, Li G. Encoding and display technologies for combinatorial libraries in drug discovery: The coming of age from biology to therapy. Acta Pharm Sin B 2024; 14:3362-3384. [PMID: 39220863 PMCID: PMC11365444 DOI: 10.1016/j.apsb.2024.04.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 03/19/2024] [Accepted: 04/08/2024] [Indexed: 09/04/2024] Open
Abstract
Drug discovery is a sophisticated process that incorporates scientific innovations and cutting-edge technologies. Compared to traditional bioactivity-based screening methods, encoding and display technologies for combinatorial libraries have recently advanced from proof-of-principle experiments to promising tools for pharmaceutical hit discovery due to their high screening efficiency, throughput, and resource minimization. This review systematically summarizes the development history, typology, and prospective applications of encoding and displayed technologies, including phage display, ribosomal display, mRNA display, yeast cell display, one-bead one-compound, DNA-encoded, peptide nucleic acid-encoded, and new peptide-encoded technologies, and examples of preclinical and clinical translation. We discuss the progress of novel targeted therapeutic agents, covering a spectrum from small-molecule inhibitors and nonpeptidic macrocycles to linear, monocyclic, and bicyclic peptides, in addition to antibodies. We also address the pending challenges and future prospects of drug discovery, including the size of screening libraries, advantages and disadvantages of the technology, clinical translational potential, and market space. This review is intended to establish a comprehensive high-throughput drug discovery strategy for scientific researchers and clinical drug developers.
Collapse
Affiliation(s)
- Yu Fan
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- Zhuhai UM Science and Technology Research Institute, Zhuhai 519031, China
| | - Ruibing Feng
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
| | - Xinya Zhang
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- Zhuhai UM Science and Technology Research Institute, Zhuhai 519031, China
| | - Zhen-Liang Wang
- Geriatric Medicine, First People's Hospital of XinXiang and the Fifth Affiliated Hospital of Xinxiang Medical College, Xinxiang 453100, China
| | - Feng Xiong
- Shenzhen Innovation Center for Small Molecule Drug Discovery Co., Ltd., Shenzhen 518000, China
| | - Shuihua Zhang
- Shenzhen Innovation Center for Small Molecule Drug Discovery Co., Ltd., Shenzhen 518000, China
| | - Zhang-Feng Zhong
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
| | - Hua Yu
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
| | - Qing-Wen Zhang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
| | - Zhang Zhang
- International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development, Ministry of Education (MoE) of People's Republic of China, College of Pharmacy, Jinan University, Guangzhou 510632, China
- Department of Pharmacy, Guangzhou Red Cross Hospital, Faculty of Medical Science, Jinan University, Guangzhou 510632, China
| | - Yitao Wang
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
| | - Guodong Li
- Macao Centre for Research and Development in Chinese Medicine, State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao SAR 999078, China
- Zhuhai UM Science and Technology Research Institute, Zhuhai 519031, China
| |
Collapse
|
34
|
Zhang MY, Ji RX, Fang L, Shen JS. Spectral-Sensing System for Distinguishing CH 3OH and CD 3OD. J Phys Chem B 2024. [PMID: 39052231 DOI: 10.1021/acs.jpcb.4c01270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Spectrally discriminating CH3OH and CD3OD, and even detecting CH3OH contents in the CD3OD solvent, are important yet have not been achieved so far, likely owing to their very similar chemical/physical properties. Herein, dynamic transesterification reactions, which can be achieved via two-step proton transfers, can be signaled via ultraviolet UV-visible (UV/vis) absorption and fluorescence spectroscopies under mild experimental conditions. Introduction of strong electron-withdrawing groups, such as -NO2, to the aromatic ring (benzoic acid moiety or phenol moiety) of carboxylate esters to activate the esters is important for transesterification reactions and is an intriguing method for modulating the selectivity of the spectral response. The rate constant of the transesterification reaction enhanced with increasing the total number of strong electron-withdrawing groups. Furthermore, the rate constants of esters in which substituent(s) are connected to the phenol moiety are higher than those of corresponding esters in which substituent(s) are connected to the benzoic acid moiety. In transesterification systems, added aliphatic amines mainly play two roles: (i) lowering the energy barrier of the first transesterification step via the formation of intermolecular hydrogen bonding in ternary systems and (ii) deprotonating the released 4-nitrophenol in UV/vis absorption spectral systems to generate an UV/vis absorption spectral signal reporter, i.e., nitrophenolate anions. As a result of the methanol-mediated transesterification reaction, spectral-sensing systems can be established for discriminating CH3OH and CD3OD and even detecting low CH3OH contents in the CD3OD solvent, owing to the kinetic isotope effect. This is the first example of spectral recognition between CD3OD and CH3OH.
Collapse
Affiliation(s)
- Mu-Yi Zhang
- College of Materials Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Rui-Xue Ji
- College of Materials Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Lei Fang
- College of Materials Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Jiang-Shan Shen
- College of Materials Science and Engineering, Huaqiao University, Xiamen 361021, China
- Xiamen Key Laboratory of Optoelectronic Materials and Advanced Manufacturing, Huaqiao University, Xiamen 361021, China
| |
Collapse
|
35
|
Rivero DS, Pérez-Pérez Y, Perretti MD, Santos T, Scoccia J, Tejedor D, Carrillo R. Kinetic Control of Complexity in Multiple Dynamic Libraries. Angew Chem Int Ed Engl 2024; 63:e202406654. [PMID: 38660925 DOI: 10.1002/anie.202406654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/22/2024] [Accepted: 04/24/2024] [Indexed: 04/26/2024]
Abstract
Multiple dynamic libraries of compounds are generated when more than one reversible reaction comes into play. Commonly, two or more orthogonal reversible reactions are used, leading to non-communicating dynamic libraries which share no building blocks. Only a few examples of communicating libraries have been reported, and in all those cases, building blocks are reversibly exchanged from one library to the other, constituting an antiparallel dynamic covalent system. Herein we report that communication between two different dynamic libraries through an irreversible process is also possible. Indeed, alkyl amines cancel the dynamic regime on the nucleophilic substitution of tetrazines, generating kinetically inert compounds. Interestingly, such amine can be part of another dynamic library, an imine-amine exchange. Thus, both libraries are interconnected with each other by an irreversible process which leads to kinetically inert structures that contain parts from both libraries, causing a collapse of the complexity. Additionally, a latent irreversible intercommunication could be developed. In such a way, a stable molecular system with specific host-guest and fluorescence properties, could be irreversibly transformed when the right stimulus was applied, triggering the cancellation of the original supramolecular and luminescent properties and the emergence of new ones.
Collapse
Affiliation(s)
- David S Rivero
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Yaiza Pérez-Pérez
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Marcelle D Perretti
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Tanausú Santos
- Departamento de Química, Centro de Investigación en Síntesis Química, Universidad de La Rioja, 26006, Logroño, Spain
| | - Jimena Scoccia
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - David Tejedor
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| | - Romen Carrillo
- Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206, La Laguna, Spain
| |
Collapse
|
36
|
Karchilakis G, Varlas S, Johnson EC, Norvilaite O, Farmer MAH, Sanderson G, Leggett GJ, Armes SP. Capturing Enzyme-Loaded Diblock Copolymer Vesicles Using an Aldehyde-Functionalized Hydrophilic Polymer Brush. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:14086-14098. [PMID: 38934738 PMCID: PMC11238591 DOI: 10.1021/acs.langmuir.4c01561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 06/04/2024] [Accepted: 06/12/2024] [Indexed: 06/28/2024]
Abstract
Compared to lipids, block copolymer vesicles are potentially robust nanocontainers for enzymes owing to their enhanced chemical stability, particularly in challenging environments. Herein we report that cis-diol-functional diblock copolymer vesicles can be chemically adsorbed onto a hydrophilic aldehyde-functional polymer brush via acetal bond formation under mild conditions (pH 5.5, 20 °C). Quartz crystal microbalance studies indicated an adsorbed amount, Γ, of 158 mg m-2 for vesicle adsorption onto such brushes, whereas negligible adsorption (Γ = 0.1 mg m-2) was observed for a control experiment conducted using a cis-diol-functionalized brush. Scanning electron microscopy and ellipsometry studies indicated a mean surface coverage of around 30% at the brush surface, which suggests reasonably efficient chemical adsorption. Importantly, such vesicles can be conveniently loaded with a model enzyme (horseradish peroxidase, HRP) using an aqueous polymerization-induced self-assembly formulation. Moreover, the immobilized vesicles remained permeable toward small molecules while retaining their enzyme payload. The enzymatic activity of such HRP-loaded vesicles was demonstrated using a well-established colorimetric assay. In principle, this efficient vesicle-on-brush strategy can be applied to a wide range of enzymes and functional proteins for the design of next-generation immobilized nanoreactors for enzyme-mediated catalysis.
Collapse
Affiliation(s)
- Georgios Karchilakis
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - Spyridon Varlas
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - Edwin C. Johnson
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - Oleta Norvilaite
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - Matthew A. H. Farmer
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - George Sanderson
- GEO
Specialty Chemicals, Hythe, Southampton, Hampshire SO45 3ZG, U.K.
| | - Graham J. Leggett
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| | - Steven P. Armes
- Dainton
Building, Department of Chemistry, The University
of Sheffield, Brook Hill, Sheffield, South
Yorkshire S3 7HF, U.K.
| |
Collapse
|
37
|
Montà-González G, Bastante-Rodríguez D, García-Fernández A, Lusby PJ, Martínez-Máñez R, Martí-Centelles V. Comparing organic and metallo-organic hydrazone molecular cages as potential carriers for doxorubicin delivery. Chem Sci 2024; 15:10010-10017. [PMID: 38966373 PMCID: PMC11220577 DOI: 10.1039/d4sc02294g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Accepted: 06/06/2024] [Indexed: 07/06/2024] Open
Abstract
Molecular cages are three-dimensional supramolecular structures that completely wrap guest molecules by encapsulation. We describe a rare comparative study between a metallo-organic cage and a fully organic analogous system, obtained by hydrazone bond formation self-assembly. Both cages are able to encapsulate the anticancer drug doxorubicin, with the organic cage forming a 1 : 1 inclusion complex with μM affinity, whereas the metallo-organic host experiences disassembly by interaction with the drug. Stability experiments reveal that the ligands of the metallo-organic cage are displaced in buffer at neutral, acidic, and basic pH, while the organic cage only disassembles under acidic conditions. Notably, the organic cage also shows minimal cell toxicity, even at high doses, whilst the doxorubicin-cage complex shows in vitro anti-cancer activity. Collectively, these results show that the attributes of the pure organic molecular cage are suitable for the future challenges of in vivo drug delivery using molecular cages.
Collapse
Affiliation(s)
- Giovanni Montà-González
- Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València Camino de Vera, s/n 46022 Valencia Spain
- Departamento de Química, Universitat Politècnica de València Camí de Vera s/n 46022 Valencia Spain
- EaStCHEM, School of Chemistry Joseph Black Building, David Brewster Road EH93FJ Edinburgh UK
| | - David Bastante-Rodríguez
- Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València Camino de Vera, s/n 46022 Valencia Spain
- Unidad Mixta UPV-CIPF de Investigación en Mecanismos de Enfermedades y Nanomedicina, Valencia, Universitat Politècnica de València, Centro de Investigación Príncipe Felipe Avenida Eduardo Primo Yúfera, 3 46012 Valencia Spain
| | - Alba García-Fernández
- Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València Camino de Vera, s/n 46022 Valencia Spain
- CIBER de Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), Instituto de Salud Carlos III 28029 Madrid Spain
- Unidad Mixta UPV-CIPF de Investigación en Mecanismos de Enfermedades y Nanomedicina, Valencia, Universitat Politècnica de València, Centro de Investigación Príncipe Felipe Avenida Eduardo Primo Yúfera, 3 46012 Valencia Spain
| | - Paul J Lusby
- EaStCHEM, School of Chemistry Joseph Black Building, David Brewster Road EH93FJ Edinburgh UK
| | - Ramón Martínez-Máñez
- Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València Camino de Vera, s/n 46022 Valencia Spain
- CIBER de Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), Instituto de Salud Carlos III 28029 Madrid Spain
- Unidad Mixta UPV-CIPF de Investigación en Mecanismos de Enfermedades y Nanomedicina, Valencia, Universitat Politècnica de València, Centro de Investigación Príncipe Felipe Avenida Eduardo Primo Yúfera, 3 46012 Valencia Spain
- Unidad Mixta de Investigación en Nanomedicina y Sensores, Universitat Politècnica de València, Instituto de Investigación Sanitaria La Fe (IISLAFE) Avenida Fernando Abril Martorell, 106 46026 Valencia Spain
- Departamento de Química, Universitat Politècnica de València Camí de Vera s/n 46022 Valencia Spain
| | - Vicente Martí-Centelles
- Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València Camino de Vera, s/n 46022 Valencia Spain
- CIBER de Bioingeniería Biomateriales y Nanomedicina (CIBER-BBN), Instituto de Salud Carlos III 28029 Madrid Spain
- Departamento de Química, Universitat Politècnica de València Camí de Vera s/n 46022 Valencia Spain
| |
Collapse
|
38
|
Kimoto M, Sugiyama S, Kumano K, Inagaki S, Ito S. Social Self-Sorting of Quasi-Racemates: A Unique Approach for Dual-Pore Molecular Crystals. J Am Chem Soc 2024; 146:17559-17565. [PMID: 38916517 PMCID: PMC11229008 DOI: 10.1021/jacs.4c01654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 05/04/2024] [Accepted: 06/03/2024] [Indexed: 06/26/2024]
Abstract
Despite recent advances in porous organic molecular crystals, the engineering of dual-pore systems within the intermolecular voids remains a significant challenge. In this study, we have achieved the crystallization-induced social self-sorting of "quasi-racemic" dialdehydes into a macrocyclic imine. X-ray crystallographic analysis unambiguously characterizes the resulting structure as incorporating two quasi-racemate pairs with four diamine molecules. Notably, different alkyl substituents on the quasi-racemates afford two types of one-dimensional pores within the macrocyclic imine crystal. The different adsorption properties of these pores were substantiated through adsorption experiments. An intriguing helical arrangement of guest molecules was observed within one of the pores. This study provides pioneering evidence that the social self-sorting of quasi-racemates offers a new methodology for creating dual-functional supramolecular materials.
Collapse
Affiliation(s)
- Momoka Kimoto
- Department
of Chemistry and Life Science, Graduate School of Engineering Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Shoichi Sugiyama
- Department
of Chemistry and Life Science, Graduate School of Engineering Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Keigo Kumano
- Department
of Chemistry and Life Science, Graduate School of Engineering Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Satoshi Inagaki
- Department
of Chemistry and Life Science, Graduate School of Engineering Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
| | - Suguru Ito
- Department
of Chemistry and Life Science, Graduate School of Engineering Science, Yokohama National University, 79-5 Tokiwadai, Hodogaya-ku, Yokohama 240-8501, Japan
- PRESTO,
Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| |
Collapse
|
39
|
Martínez D, Schlossarek T, Würthner F, Soberats B. Isothermal Phase Transitions in Liquid Crystals Driven by Dynamic Covalent Chemistry. Angew Chem Int Ed Engl 2024; 63:e202403910. [PMID: 38635375 DOI: 10.1002/anie.202403910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 04/18/2024] [Accepted: 04/18/2024] [Indexed: 04/20/2024]
Abstract
The dynamic nature of calamitic liquid crystals is exploited to perform isothermal phase transitions driven by dynamic covalent chemistry. For this purpose, nematic (N) arrays based on aldehyde 1 were treated with different amines (A-E) in an on-surface process, which resulted in different isothermal phase transitions. These phase transformations were caused by in situ imination reactions and are dependent on the nature of the added amine. Transitions from the N to crystal (1A, 1E), isotropic (1B), and smectic (Sm) (1C, 1D) phases were achieved, while the resulting materials feature thermotropic liquid crystal behavior. A sequential transformation from the N 1 to the Sm 1C and then to the N 1B was achieved by coupling an imination to a transimination processes and adjusting the temperature. All of these processes were well characterized by microscopic, spectroscopic, and X-ray techniques, unlocking not only the constitutional but also the structural aspects of the phase transitions. This work provides new insights into designing constitutionally and structurally adaptable liquid crystal systems, paving the way toward the conception of programable evolutive pathways and adaptive materials.
Collapse
Affiliation(s)
- Daniel Martínez
- Department of Chemistry, Universitat de les Illes Balears, Cra. Valldemossa, Km. 7.5, 07122, Palma de Mallorca, Spain
| | - Tim Schlossarek
- Institut für Organische Chemie, Center for Nanosystems Chemistry (CNC), and Bavarian Polymer Institute (BPI), Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Frank Würthner
- Institut für Organische Chemie, Center for Nanosystems Chemistry (CNC), and Bavarian Polymer Institute (BPI), Universität Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Bartolome Soberats
- Department of Chemistry, Universitat de les Illes Balears, Cra. Valldemossa, Km. 7.5, 07122, Palma de Mallorca, Spain
| |
Collapse
|
40
|
Yang B, Zhang YM, Wang C, Gu C, Li C, Yin H, Yan Y, Yang G, Zhang SXA. An electrochemically responsive B-O dynamic bond to switch photoluminescence of boron-nitrogen-doped polyaromatics. Nat Commun 2024; 15:5166. [PMID: 38886345 PMCID: PMC11183244 DOI: 10.1038/s41467-024-48918-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 05/17/2024] [Indexed: 06/20/2024] Open
Abstract
Boron-doped polycyclic aromatic hydrocarbons exhibit excellent optical properties, and regulating their photophysical processes is a powerful strategy to understand the luminescence mechanism and develop new materials and applications. Herein, an electrochemically responsive B-O dynamic coordination bond is proposed, and used to regulate the photophysical processes of boron-nitrogen-doped polyaromatic hydrocarbons. The formation of the B-O coordination bond under a suitable voltage is confirmed by experiments and theoretical calculations, and B-O coordination bond can be broken back to the initial state under opposite voltage. The whole process is accompanied by reversible changes in photophysical properties. Further, electrofluorochromic devices are successfully prepared based on the above electrochemically responsive coordination bond. The success and harvest of this exploration are beneficial to understand the luminescence mechanism of boron-nitrogen-doped polyaromatic hydrocarbons, and provide ideas for design of dynamic covalent bonds and broaden material types and applications.
Collapse
Affiliation(s)
- Baige Yang
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China
| | - Yu-Mo Zhang
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China.
| | - Chunyu Wang
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China
| | - Chang Gu
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China
| | - Chenglong Li
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China.
| | - Hang Yin
- Institute of Atomic and Molecular Physics, Jilin University, Changchun, P. R. China.
| | - Yan Yan
- College of Instrumentation & Electrical Engineering, Jilin University, Changchun, P. R. China
| | - Guojian Yang
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China
| | - Sean Xiao-An Zhang
- State Key Lab of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, P. R. China.
| |
Collapse
|
41
|
Diehl CJ, Salerno A, Ciulli A. Ternary Complex-Templated Dynamic Combinatorial Chemistry for the Selection and Identification of Homo-PROTACs. Angew Chem Int Ed Engl 2024; 63:e202319456. [PMID: 38626385 DOI: 10.1002/anie.202319456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 04/08/2024] [Accepted: 04/15/2024] [Indexed: 04/18/2024]
Abstract
Dynamic combinatorial chemistry (DCC) leverages a reversible reaction to generate compound libraries from constituting building blocks under thermodynamic control. The position of this equilibrium can be biased by addition of a target macromolecule towards enrichment of bound ligands. While DCC has been applied to select ligands for a single target protein, its application to identifying chimeric molecules inducing proximity between two proteins is unprecedented. In this proof-of-concept study, we develop a DCC approach to select bifunctional proteolysis targeting chimeras (PROTACs) based on their ability to stabilize the ternary complex. We focus on VHL-targeting Homo-PROTACs as model system, and show that the formation of a VHL2 : Homo-PROTAC ternary complex reversibly assembled using thiol-disulfide exchange chemistry leads to amplification of potent VHL Homo-PROTACs with degradation activities which correlated well with their biophysical ability to dimerize VHL. Ternary complex templated dynamic combinatorial libraries allowed identification of novel Homo-PROTAC degraders. We anticipate future applications of ternary-complex directed DCC to early PROTAC screenings and expansion to other proximity-inducing modalities beyond PROTACs.
Collapse
Affiliation(s)
- Claudia J Diehl
- Centre for Targeted Protein Degradation, School of Life Sciences, University of Dundee, 1 James Lindsay Place, DD1 5JJ, Dundee, Scotland, U.K
| | - Alessandra Salerno
- Centre for Targeted Protein Degradation, School of Life Sciences, University of Dundee, 1 James Lindsay Place, DD1 5JJ, Dundee, Scotland, U.K
| | - Alessio Ciulli
- Centre for Targeted Protein Degradation, School of Life Sciences, University of Dundee, 1 James Lindsay Place, DD1 5JJ, Dundee, Scotland, U.K
| |
Collapse
|
42
|
Nosek V, Míšek J. Sulfinamide Crossover Reaction. J Org Chem 2024; 89:7927-7932. [PMID: 38785122 PMCID: PMC11165587 DOI: 10.1021/acs.joc.4c00572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 05/10/2024] [Accepted: 05/15/2024] [Indexed: 05/25/2024]
Abstract
This study unveils a new catalytic crossover reaction of sulfinamides. Leveraging mild acid catalysis, the reaction demonstrates a high tolerance to structural variations, yielding equimolar products across diverse sulfinamide substrates. Notably, small sulfinamide libraries can be selectively oxidized to sulfonamides, providing a new platform for ligand optimization and discovery in medicinal chemistry. This crossover chemotype provides a new tool for high-throughput experimentation in discovery chemistry.
Collapse
Affiliation(s)
- Vladimír Nosek
- Department of Organic Chemistry, Faculty
of Science, Charles University in Prague, Hlavova 2030/8, 12843 Prague 2, Czech Republic
| | - Jiří Míšek
- Department of Organic Chemistry, Faculty
of Science, Charles University in Prague, Hlavova 2030/8, 12843 Prague 2, Czech Republic
| |
Collapse
|
43
|
Chen Q, Zhu K. Advancements and strategic approaches in catenane synthesis. Chem Soc Rev 2024; 53:5677-5703. [PMID: 38659402 DOI: 10.1039/d3cs00499f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Catenanes, a distinctive category of mechanically interlocked molecules composed of intertwined macrocycles, have undergone significant advancements since their initial stages characterized by inefficient statistical synthesis methods. Through the aid of molecular recognition processes and principles of self-assembly, a diverse array of catenanes with intricate structures can now be readily accessed utilizing template-directed synthetic protocols. The rapid evolution and emergence of this field have catalyzed the design and construction of artificial molecular switches and machines, leading to the development of increasingly integrated functional systems and materials. This review endeavors to explore the pivotal advancements in catenane synthesis from its inception, offering a comprehensive discussion of the synthetic methodologies employed in recent years. By elucidating the progress made in synthetic approaches to catenanes, our aim is to provide a clearer understanding of the future challenges in further advancing catenane chemistry from a synthetic perspective.
Collapse
Affiliation(s)
- Qing Chen
- School of Chemistry, Sun Yat-Sen University, Guangzhou, 510275, China.
| | - Kelong Zhu
- School of Chemistry, Sun Yat-Sen University, Guangzhou, 510275, China.
| |
Collapse
|
44
|
Chetot T, Marocco Stuardi F, Forot A, Ducreux M, Baudouin A, Chefdeville E, Perret F, Vial L, Leclaire J. Switching between Nonisoenergetic Dynamic Covalent Reactions Using Host-Guest Chemistry. J Am Chem Soc 2024; 146:13580-13587. [PMID: 38687470 DOI: 10.1021/jacs.4c03400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
CO2 reacts with simple amines in the presence of water to generate dynamic combinatorial libraries of majority (i.e., ammonium carbamates) and minority (i.e., ammonium carbonates) nonisoenergetic covalent adducts. Over the past two decades, our laboratory has reported on a new class of cavitands, namely, dyn[n]arenes, from which a polyanionic macrocycle is a highly efficient receptor for linear polyammoniums that forms [2]pseudorotaxanes in water at neutral pH. Herein, we demonstrate that the formation of [2]pseudorotaxanes shifts the equilibrium of CO2 capture by polyamines in water toward the quasi-exclusive formation of carbonate adducts, providing the first example of a switch between two competitive and reversible covalent processes triggered by host-guest interactions. In addition, this supramolecular approach to CO2 capture exhibits enhanced capture efficiency by increasing the state of protonation of complexed vs uncomplexed polyamines. Altogether, we report here that a templating approach can divert the outcome of two reversible covalent chemistries involving nucleophilic additions and acid-base reactions, challenging therefore the common knowledge that noncovalent and covalent bonds operate in separate energy frames.
Collapse
Affiliation(s)
- Titouan Chetot
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| | | | - Adrien Forot
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| | - Maxime Ducreux
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| | - Anne Baudouin
- Université Claude Bernard Lyon 1, CCRMN, F-69622 Villeurbanne, France
| | | | - Florent Perret
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| | - Laurent Vial
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| | - Julien Leclaire
- CNRS, Université Claude Bernard Lyon 1, ICBMS UMR5246, F-69622 Villeurbanne, France
| |
Collapse
|
45
|
Min F, Dreiss CA, Chu Z. Dynamic covalent surfactants and their uses in the development of smart materials. Adv Colloid Interface Sci 2024; 327:103159. [PMID: 38640843 DOI: 10.1016/j.cis.2024.103159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 03/08/2024] [Accepted: 04/14/2024] [Indexed: 04/21/2024]
Abstract
Dynamic covalent chemistry, which leverages the dynamic nature of reversible covalent bonds controlled by the conditions of reaction equilibrium, has demonstrated great potential in diverse applications related to both the stability of covalent bonds and the possibility of exchanging building blocks, imparting to the systems the possibility of "error checking" and "proof-reading". By incorporating dynamic covalent bonds into surfactant molecular architectures, combinatorial libraries of surfactants with bespoke functionalities can be readily fabricated through a facile strategy, with minimum effort in organic synthesis. Consequently, a multidisciplinary field of research involving the creation and application of dynamic covalent surfactants has recently emerged, which has aroused great attention in surfactant and colloid science, supramolecular chemistry, self-assembly, smart materials, drug delivery, and nanotechnology. This review reports results in this field published over recent years, discusses the possibilities presented by dynamic covalent surfactants and their applications in developing smart self-assembled materials, and outlines some future perspectives.
Collapse
Affiliation(s)
- Fan Min
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China; Greater Bay Area Institute for Innovation, Hunan University, Guangzhou 511300, China
| | - Cécile A Dreiss
- Institute of Pharmaceutical Science, King's College London, Franklin-Wilkins Building, 150 Stamford Street, London SE1 9NH, UK.
| | - Zonglin Chu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China; Greater Bay Area Institute for Innovation, Hunan University, Guangzhou 511300, China.
| |
Collapse
|
46
|
Pehlivan Ö, Wojtkowiak K, Jezierska A, Waliczek M, Stefanowicz P. Photochemical Transformations of Peptides Containing the N-(2-Selenoethyl)glycine Moiety. ACS OMEGA 2024; 9:16775-16791. [PMID: 38617632 PMCID: PMC11007844 DOI: 10.1021/acsomega.4c01015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/18/2024] [Accepted: 03/21/2024] [Indexed: 04/16/2024]
Abstract
The diselenide bond has attracted considerable attention due to its ability to undergo the metathesis reaction in response to visible light. In our previous study, we demonstrated visible-light-induced diselenide metathesis of selenocysteine-containing linear peptides, allowing for the convenient generation of peptide libraries. Here, we investigated the transformation of linear and cyclic peptides containing the N-(2-selenoethyl)glycine moiety. The linear peptides were highly susceptible to the metathesis reaction, whereas the cyclic systems gave only limited conversion yields of the metathesis product. In both cases, side reactions leading to the formation of mono-, di-, and polyselenides were observed upon prolonged irradiation. To confirm the radical mechanism of the reaction, the radical initiator 2,2'-azobis[2-(2-imidazolin-2-yl)propane] dihydrochloride (VA-044) was tested, and it was found to induce diselenide metathesis without photochemical activation. The data were interpreted in the light of quantum-chemical simulations based on density functional theory (DFT). The simulations were performed at the B3LYP-D3BJ/def2-TZVP level of theory using a continuum solvation model (IEF-PCM) and methanol as a solvent.
Collapse
Affiliation(s)
- Özge Pehlivan
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie str. 14, 50-383 Wrocław, Poland
| | - Kamil Wojtkowiak
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie str. 14, 50-383 Wrocław, Poland
| | - Aneta Jezierska
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie str. 14, 50-383 Wrocław, Poland
| | - Mateusz Waliczek
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie str. 14, 50-383 Wrocław, Poland
| | - Piotr Stefanowicz
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie str. 14, 50-383 Wrocław, Poland
| |
Collapse
|
47
|
Rieu T, Osypenko A, Lehn JM. Triple Adaptation of Constitutional Dynamic Networks of Imines in Response to Micellar Agents: Internal Uptake-Interfacial Localization-Shape Transition. J Am Chem Soc 2024; 146:9096-9111. [PMID: 38526415 DOI: 10.1021/jacs.3c14200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
Abstract
Understanding the behavior of complex chemical reaction networks and how environmental conditions can modulate their organization as well as the associated outcomes may take advantage of the design of related artificial systems. Microenvironments with defined boundaries are of particular interest for their unique properties and prebiotic significance. Dynamic covalent libraries (DCvLs) and their underlying constitutional dynamic networks (CDNs) have been shown to be appropriate for studying adaptation to several processes, including compartmentalization. However, microcompartments (e.g., micelles) provide specific environments for the selective protection from interfering reactions such as hydrolysis and an enhanced chemical promiscuity due to the interface, governing different processes of network modulation. Different interactions between the micelles and the library constituents lead to dynamic sensing, resulting in different expressions of the network through pattern generation. The constituents integrated into the micelles are protected from hydrolysis and hence preferentially expressed in the network composition at the cost of constitutionally linked members. In the present work, micellar integration was observed for two processes: internal uptake based on hydrophobic forces and interfacial localization relying on attractive electrostatic interactions. The latter drives a complex triple adaptation of the network with feedback on the shape of the self-assembled entity. Our results demonstrate how microcompartments can enforce the expression of constituents of CDNs by reducing the hydrolysis of uptaken members, unravelling processes that govern the response of reactions networks. Such studies open the way toward using DCvLs and CDNs to understand the emergence of complexity within reaction networks by their interactions with microenvironments.
Collapse
Affiliation(s)
- Tanguy Rieu
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 8 allée Gaspard Monge, 67000 Strasbourg, France
| | - Artem Osypenko
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 8 allée Gaspard Monge, 67000 Strasbourg, France
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 8 allée Gaspard Monge, 67000 Strasbourg, France
| |
Collapse
|
48
|
Xu J, Shao M, Wang X, Chen T, Li S, Zhang X, Wang T, Zhang Y, Yang Z, Wang Q. Flexible Cages Enable Robust Supramolecular Elastomers. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2311992. [PMID: 38183353 DOI: 10.1002/adma.202311992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 12/19/2023] [Indexed: 01/08/2024]
Abstract
Advances in modern industrial technology continue to place stricter demands on engineering polymeric materials, but simultaneously possessing superior strength and toughness remains a daunting challenge. Herein, a pioneering flexible cage-reinforced supramolecular elastomer (CSE) is reported that exhibits superb robustness, tear resistance, anti-fatigue, and shape memory properties, achieved by innovatively introducing organic imide cages (OICs) into supramolecular networks. Intriguingly, extremely small amounts of OICs make the elastomer stronger, significantly improving mechanical strength (85.0 MPa; ≈10-fold increase) and toughness (418.4 MJ m-3; ≈7-fold increase). Significantly, the cooperative effect of gradient hydrogen bonds and OICs is experimentally and theoretically demonstrated as flexible nodes, enabling more robust supramolecular networks. In short, the proposed strengthening strategy of adding flexible cages effectively balances the inherent conflict between material strength and toughness, and the prepared CSEs are anticipated to be served in large-scale devices such as TBMs in the future.
Collapse
Affiliation(s)
- Jing Xu
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Mingchao Shao
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Xiaoyue Wang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Tianze Chen
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Song Li
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Xinrui Zhang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Tingmei Wang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Yaoming Zhang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Zenghui Yang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Qihua Wang
- State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences, Beijing, 100049, China
- Key Laboratory of Science and Technology on Wear and Protection of Materials, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| |
Collapse
|
49
|
Singh A, Avinash K, Malaspina LA, Banoo M, Alhameedi K, Jayatilaka D, Grabowsky S, Thomas SP. Dynamic Covalent Bonds in the Ebselen Class of Antioxidants Probed by X-ray Quantum Crystallography. Chemistry 2024; 30:e202303384. [PMID: 38126954 DOI: 10.1002/chem.202303384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 12/19/2023] [Accepted: 12/20/2023] [Indexed: 12/23/2023]
Abstract
Dynamic bonds are essential structural ingredients of dynamic covalent chemistry that involve reversible cleavage and formation of bonds. Herein, we explore the electronic characteristics of Se-N bonds in the organo-selenium antioxidant ebselen and its derivatives for their propensity to function as dynamic covalent bonds by employing high-resolution X-ray quantum crystallography and complementary computational studies. An analysis of the experimentally reconstructed X-ray wavefunctions reveals the salient electronic features of the Se-N bonds with very low electron density localized at the bonding region and a positive Laplacian value at the bond critical point. Bond orders and percentage covalency and ionicity estimated from the X-ray wavefunctions, along with localized orbital locator (LOL) and electron localization function (ELF) analyses show that the Se-N bond is unique in its closed shell-like features, despite being a covalent bond. Time-dependent DFT calculations simulate the cleavage of Se-N bonds in ebselen in the excited state, further substantiating their nature as dynamic bonds.
Collapse
Affiliation(s)
- Ashi Singh
- Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, 110016, India
| | - Kiran Avinash
- Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, 110016, India
| | - Lorraine A Malaspina
- University of Bern, Department of Chemistry, Biochemistry and Pharmaceutical Sciences, Freiestrasse 3, 3012, Bern, Switzerland
| | - Masoumeh Banoo
- Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, 110016, India
| | - Khidhir Alhameedi
- School of Molecular Sciences, University of Western Australia, Perth, WA, 6009, Australia
- Faculty of Education for Pure Sciences -, University of Kerbala, Karbala, Iraq
| | - Dylan Jayatilaka
- School of Molecular Sciences, University of Western Australia, Perth, WA, 6009, Australia
| | - Simon Grabowsky
- University of Bern, Department of Chemistry, Biochemistry and Pharmaceutical Sciences, Freiestrasse 3, 3012, Bern, Switzerland
| | - Sajesh P Thomas
- Department of Chemistry, Indian Institute of Technology Delhi, New Delhi, 110016, India
| |
Collapse
|
50
|
Song G, Lee S, Jeong KS. Complexation-driven assembly of imine-linked helical receptors showing adaptive folding and temperature-dependent guest selection. Nat Commun 2024; 15:1501. [PMID: 38374171 PMCID: PMC10876968 DOI: 10.1038/s41467-024-45322-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 01/22/2024] [Indexed: 02/21/2024] Open
Abstract
The development of synthetic receptors capable of selectively binding guests with diverse structures and multiple functional groups poses a significant challenge. Here, we present the efficient assembly of foldamer-based receptors for monosaccharides, utilising the principles of complexation-induced equilibrium shifting and adaptive folding. Diimine 4 can be quantitatively assembled from smaller components when D-galactose is added as a guest among monosaccharides we examined. During this assembly, dual complexation-induced equilibrium shifts toward both the formation of diimine 4 and the conversion of D-galactose into α-D-galactofuranose are observed. Diimine 6 is quantitatively assembled in the presence of two different guests, methyl β-D-glucopyranoside and methyl β-D-galactopyranoside, resulting in the formation of two dimeric complexes: (6-MP)2⊃(methyl β-D-glucopyranoside)2 and (6-MM)2⊃(methyl β-D-galactopyranoside∙2H2O)2, respectively. These two complexes exhibit distinct folding structures with domain-swapping cavities depending on the bound guest and temperature. Interestingly, (6-MM)2⊃(methyl β-D-galactopyranoside∙2H2O)2 is exclusively formed at lower temperatures, while (6-MP)2⊃(methyl β-D-glucopyranoside)2 is only formed at higher temperatures.
Collapse
Affiliation(s)
- Geunmoo Song
- Department of Chemistry, Yonsei University, Seoul, 03722, South Korea
| | - Seungwon Lee
- Department of Chemistry, Yonsei University, Seoul, 03722, South Korea
| | - Kyu-Sung Jeong
- Department of Chemistry, Yonsei University, Seoul, 03722, South Korea.
| |
Collapse
|