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Chang S, Yang J, Novoseltseva A, Abdelhakeem A, Hyman M, Fu X, Li C, Chen S, Augustinack JC, Magnain C, Fischl B, Mckee AC, Boas DA, Chen IA, Wang H. Multi-Scale Label-Free Human Brain Imaging with Integrated Serial Sectioning Polarization Sensitive Optical Coherence Tomography and Two-Photon Microscopy. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2303381. [PMID: 37882348 PMCID: PMC10724383 DOI: 10.1002/advs.202303381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 08/29/2023] [Indexed: 10/27/2023]
Abstract
The study of aging and neurodegenerative processes in the human brain requires a comprehensive understanding of cytoarchitectonic, myeloarchitectonic, and vascular structures. Recent computational advances have enabled volumetric reconstruction of the human brain using thousands of stained slices, however, tissue distortions and loss resulting from standard histological processing have hindered deformation-free reconstruction. Here, the authors describe an integrated serial sectioning polarization-sensitive optical coherence tomography (PSOCT) and two photon microscopy (2PM) system to provide label-free multi-contrast imaging of intact brain structures, including scattering, birefringence, and autofluorescence of human brain tissue. The authors demonstrate high-throughput reconstruction of 4 × 4 × 2cm3 sample blocks and simple registration between PSOCT and 2PM images that enable comprehensive analysis of myelin content, vascular structure, and cellular information. The high-resolution 2PM images provide microscopic validation and enrichment of the cellular information provided by the PSOCT optical properties on the same sample, revealing the densely packed fibers, capillaries, and lipofuscin-filled cell bodies in the cortex and white matter. It is shown that the imaging system enables quantitative characterization of various pathological features in aging process, including myelin degradation, lipofuscin accumulation, and microvascular changes, which opens up numerous opportunities in the study of neurodegenerative diseases in the future.
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Affiliation(s)
- Shuaibin Chang
- Department of Electrical and Computer EngineeringBoston University8 St Mary's StBoston02215USA
| | - Jiarui Yang
- Department of Biomedical EngineeringBoston University44 Cummington MallBoston02215USA
| | - Anna Novoseltseva
- Department of Biomedical EngineeringBoston University44 Cummington MallBoston02215USA
| | - Ayman Abdelhakeem
- Department of Electrical and Computer EngineeringBoston University8 St Mary's StBoston02215USA
| | - Mackenzie Hyman
- Department of Biomedical EngineeringBoston University44 Cummington MallBoston02215USA
| | - Xinlei Fu
- Department of Mechanical EngineeringThe Chinese University of Hong KongHong Kong999077China
| | - Chenglin Li
- Department of Mechanical EngineeringThe Chinese University of Hong KongHong Kong999077China
| | - Shih‐Chi Chen
- Department of Mechanical EngineeringThe Chinese University of Hong KongHong Kong999077China
| | - Jean C. Augustinack
- Department of RadiologyMassachusetts General HospitalA.A. Martinos Center for Biomedical Imaging13th StreetBoston02129USA
| | - Caroline Magnain
- Department of RadiologyMassachusetts General HospitalA.A. Martinos Center for Biomedical Imaging13th StreetBoston02129USA
| | - Bruce Fischl
- Department of RadiologyMassachusetts General HospitalA.A. Martinos Center for Biomedical Imaging13th StreetBoston02129USA
| | - Ann C. Mckee
- VA Boston Healthcare SystemU.S. Department of Veteran AffairsBoston02132USA
- Boston University Chobanian and Avedisian School of MedicineBoston University Alzheimer's Disease Research Center and CTE CenterBoston02118USA
- Department of NeurologyBoston University Chobanian and Avedisian School of MedicineBoston02118USA
- Department of Pathology and Laboratory MedicineBoston University Chobanian and Avedisian School of MedicineBoston02118USA
- VA Bedford Healthcare SystemU.S. Department of Veteran AffairsBedfordMA01730‐1114USA
| | - David A. Boas
- Department of Electrical and Computer EngineeringBoston University8 St Mary's StBoston02215USA
- Department of Biomedical EngineeringBoston University44 Cummington MallBoston02215USA
| | - Ichun Anderson Chen
- Department of Biomedical EngineeringBoston University44 Cummington MallBoston02215USA
| | - Hui Wang
- Department of RadiologyMassachusetts General HospitalA.A. Martinos Center for Biomedical Imaging13th StreetBoston02129USA
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Yang X, Liu S, Xia F, Wu M, Adie S, Xu C. Simultaneous multimodal three-photon and optical coherence microscopy of the mouse brain in the 1700 nm optical window in vivo. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.11.557176. [PMID: 37745620 PMCID: PMC10515788 DOI: 10.1101/2023.09.11.557176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Multimodal microscopy combining various imaging approaches can provide complementary information about tissue in a single imaging session. Here, we demonstrate a multimodal approach combining three-photon microscopy (3PM) and spectral-domain optical coherence microscopy (SD-OCM). We show that an optical parametric chirped-pulse amplification (OPCPA) laser source, which is the standard source for three-photon fluorescence excitation and third harmonic generation (THG), can be used for simultaneous OCM, 3-photon (3P) fluorescence and THG imaging. We validated the system performance in deep mouse brains in vivo with an OPCPA source operating at 1620 nm center wavelength. We visualized small structures such as myelinated axons, neurons, and large fiber tracts in white matter with high spatial resolution non-invasively using linear and nonlinear contrast at >1 mm depth in intact adult mouse brain. Our results showed that simultaneous OCM and 3PM at the long wavelength window can be conveniently combined for deep tissue imaging in vivo.
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Affiliation(s)
- Xusan Yang
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY, 14853, USA
- Current address: Institute of Physics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY, 14853, USA
| | - Fei Xia
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY, 14853, USA
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA
- Current address: Laboratoire Kastler Brossel, ENS-Universite PSL, CNRS, Sorbonne Université, Collège de France, Paris, 75005, France
| | - Meiqi Wu
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA
| | - Steven Adie
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA
| | - Chris Xu
- School of Applied and Engineering Physics, Cornell University, Ithaca, NY, 14853, USA
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3
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Ko YM, Kang CM, Lee YJ, Jang HJ, Ahn TJ, Eom TJ. Nondestructive volumetric optical analysis of corroded copper oxidation using 1700nm swept-source optical coherence microscopy. OPTICS EXPRESS 2023; 31:36281-36292. [PMID: 38017783 DOI: 10.1364/oe.502411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 09/28/2023] [Indexed: 11/30/2023]
Abstract
This study presents a novel nondestructive analysis method for precise characterization of corroded copper oxidation using optical coherence microscopy (OCM). By exploiting the partial light transmission through metallic oxide layers, we employed a specialized OCM system with a wavelength of 1700nm and enhanced the analysis accuracy compared to conventional optical coherence tomography (OCT). The developed OCM system featured a numerical aperture (NA) of 0.15, providing improved surface profiling and higher lateral resolution than OCT. we developed a peak-finding algorithm to accurately determine the thickness of the copper oxide layer from the acquired interference data with zero padding. Our method was validated by comparing the measured thickness profiles with those obtained from scanning electron microscope (SEM) images of corroded metals. The copper oxidation specimens were prepared after heat treatment for 1, 2, 4, and 8 h in an alumina tube furnace at a temperature of 900 °C to find the correlation between the OCM thickness measurement. Additionally, the acquired enface 3D images enabled the identification of local corrosion distribution within a 4 mm × 4 mm area. The en-face mapping images are utilized to analyze the uniformity of the metal oxidation process across the imaging area of the copper oxidation specimens. With an increase in heat treatment time, the median value of the thickness histogram for the copper oxide within the area consistently remained around 10 µm. However, the thickness variation ranged from -2 µm to 5 µm. This indicates that as the heat treatment time progresses, the thickness of the copper oxide becomes more non-uniform. Our technique holds great potential for nondestructive and noncontact detection of metal corrosion and assessment of corrosion rates in various industrial applications. Future research efforts could focus on expanding the application of OCM to different metals and exploring its commercialization prospects for practical implementation in diverse industries.
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Delafontaine-Martel P, Zhang C, Lu X, Damseh R, Lesage F, Marchand PJ. Targeted capillary photothrombosis via multiphoton excitation of Rose Bengal. J Cereb Blood Flow Metab 2023; 43:1713-1725. [PMID: 36647768 PMCID: PMC10581236 DOI: 10.1177/0271678x231151560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 12/12/2022] [Accepted: 12/19/2022] [Indexed: 01/18/2023]
Abstract
Microvascular stalling, the process occurring when a capillary temporarily loses perfusion, has gained increasing interest in recent years through its demonstrated presence in various neuropathologies. Studying the impact of such stalls on the surrounding brain tissue is of paramount importance to understand their role in such diseases. Despite efforts trying to study the stalling events, investigations are hampered by their elusiveness and scarcity. In an attempt to alleviate these hurdles, we present here a novel methodology enabling transient occlusions of targeted microvascular segments through multiphoton excitation of Rose Bengal, an established photothrombotic agent. With n = 7 mice C57BL/6 J (5 males and 2 females) and 95 photothrombosis trials, we demonstrate the ability of triggering reversible blockages by illuminating a capillary segment during ∼300 s at 1000 nm, using a standard Ti:Sapphire femtosecond laser. Furthermore, we performed concurrent Optical Coherence Microscopy (OCM) angiography imaging of the microvascular network to highlight the specificity of the targeted occlusion and its duration. Through comparison with a control group, we conclude that blood flow cessation is indeed created by the photothrombotic agent via multiphoton excitation and is temporary, followed by a flow recovery in less than 24 h. Moreover, Immunohistology points toward a stalling mechanism driven by adherence of the neutrophil in the vascular lumen. This observation seems to be promoted by the inflammation locally created via multiphoton activation of Rose Bengal.
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Affiliation(s)
- Patrick Delafontaine-Martel
- Department of Electrical Engineering, Polytechnique Montreal, Montreal, Canada
- Research Center, Montreal Heart Institute, Montreal, Canada
| | - Cong Zhang
- Department of Electrical Engineering, Polytechnique Montreal, Montreal, Canada
- Research Center, Montreal Heart Institute, Montreal, Canada
| | - Xuecong Lu
- Research Center, Montreal Heart Institute, Montreal, Canada
- DeGroote School of Business – McMaster University, Ontario, Canada
| | - Rafat Damseh
- Research Center, Montreal Heart Institute, Montreal, Canada
- College of Information Technology, United Arab Emirates University, Al Ain, United Arab Emirates
| | - Frédéric Lesage
- Department of Electrical Engineering, Polytechnique Montreal, Montreal, Canada
- Research Center, Montreal Heart Institute, Montreal, Canada
| | - Paul J Marchand
- Department of Electrical Engineering, Polytechnique Montreal, Montreal, Canada
- Research Center, Montreal Heart Institute, Montreal, Canada
- École polytechnique fédérale de Lausanne- EPFL, Lausanne, Switzerland
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Chang S, Yang J, Novoseltseva A, Fu X, Li C, Chen SC, Augustinack JC, Magnain C, Fischl B, Mckee AC, Boas DA, Chen IA, Wang H. Multi-Scale Label-free Human Brain Imaging with Integrated Serial Sectioning Polarization Sensitive Optical Coherence Tomography and Two-Photon Microscopy. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.22.541785. [PMID: 37293092 PMCID: PMC10245911 DOI: 10.1101/2023.05.22.541785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The study of neurodegenerative processes in the human brain requires a comprehensive understanding of cytoarchitectonic, myeloarchitectonic, and vascular structures. Recent computational advances have enabled volumetric reconstruction of the human brain using thousands of stained slices, however, tissue distortions and loss resulting from standard histological processing have hindered deformation-free reconstruction of the human brain. The development of a multi-scale and volumetric human brain imaging technique that can measure intact brain structure would be a major technical advance. Here, we describe the development of integrated serial sectioning Polarization Sensitive Optical Coherence Tomography (PSOCT) and Two Photon Microscopy (2PM) to provide label-free multi-contrast imaging, including scattering, birefringence and autofluorescence of human brain tissue. We demonstrate that high-throughput reconstruction of 4×4×2cm3 sample blocks and simple registration of PSOCT and 2PM images enable comprehensive analysis of myelin content, vascular structure, and cellular information. We show that 2μm in-plane resolution 2PM images provide microscopic validation and enrichment of the cellular information provided by the PSOCT optical property maps on the same sample, revealing the sophisticated capillary networks and lipofuscin filled cell bodies across the cortical layers. Our method is applicable to the study of a variety of pathological processes, including demyelination, cell loss, and microvascular changes in neurodegenerative diseases such as Alzheimer's disease (AD) and Chronic Traumatic Encephalopathy (CTE).
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Affiliation(s)
- Shuaibin Chang
- Department of Electrical and Computer Engineering, Boston University, 8 St Mary’s St, Boston 02215, USA
| | - Jiarui Yang
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston 02215, USA
| | - Anna Novoseltseva
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston 02215, USA
| | - Xinlei Fu
- The Chinese University of Hong Kong, Department of Mechanical Engineering, Hong Kong Special Administrative Region, China
| | - Chenglin Li
- The Chinese University of Hong Kong, Department of Mechanical Engineering, Hong Kong Special Administrative Region, China
| | - Shih-Chi Chen
- The Chinese University of Hong Kong, Department of Mechanical Engineering, Hong Kong Special Administrative Region, China
| | - Jean C. Augustinack
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston 02129, USA
| | - Caroline Magnain
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston 02129, USA
| | - Bruce Fischl
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston 02129, USA
| | - Ann C. Mckee
- VA Boston Healthcare System, U.S. Department of Veteran Affairs
- Boston University Chobanian and Avedisian School of Medicine, Boston University Alzheimer’s Disease Research Center and CTE Center
- Department of Neurology, Boston University Chobanian and Avedisian School of Medicine
- Department of Pathology and Laboratory Medicine, Boston University Chobanian and Avedisian School of Medicine
- VA Bedford Healthcare System, U.S. Department of Veteran Affairs, Bedford, MA, USA
| | - David A. Boas
- Department of Electrical and Computer Engineering, Boston University, 8 St Mary’s St, Boston 02215, USA
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston 02215, USA
| | - Ichun Anderson Chen
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston 02215, USA
| | - Hui Wang
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston 02129, USA
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Stamenkovic S, Li Y, Waters J, Shih A. Deep Imaging to Dissect Microvascular Contributions to White Matter Degeneration in Rodent Models of Dementia. Stroke 2023; 54:1403-1415. [PMID: 37094035 PMCID: PMC10460612 DOI: 10.1161/strokeaha.122.037156] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
The increasing socio-economic burden of Alzheimer disease (AD) and AD-related dementias has created a pressing need to define targets for therapeutic intervention. Deficits in cerebral blood flow and neurovascular function have emerged as early contributors to disease progression. However, the cause, progression, and consequence of small vessel disease in AD/AD-related dementias remains poorly understood, making therapeutic targets difficult to pinpoint. Animal models that recapitulate features of AD/AD-related dementias may provide mechanistic insight because microvascular pathology can be studied as it develops in vivo. Recent advances in in vivo optical and ultrasound-based imaging of the rodent brain facilitate this goal by providing access to deeper brain structures, including white matter and hippocampus, which are more vulnerable to injury during cerebrovascular disease. Here, we highlight these novel imaging approaches and discuss their potential for improving our understanding of vascular contributions to AD/AD-related dementias.
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Affiliation(s)
- Stefan Stamenkovic
- Center for Developmental Biology and Regenerative Medicine, Seattle Children’s Research Institute, Seattle, WA, USA
| | - Yuandong Li
- Center for Developmental Biology and Regenerative Medicine, Seattle Children’s Research Institute, Seattle, WA, USA
| | - Jack Waters
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Andy Shih
- Center for Developmental Biology and Regenerative Medicine, Seattle Children’s Research Institute, Seattle, WA, USA
- Department of Pediatrics, University of Washington, Seattle, WA, USA
- Allen Institute for Brain Science, Seattle, WA, USA
- Department of Bioengineering, University of Washington, Seattle, WA, USA
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Saleah SA, Seong D, Wijesinghe RE, Han S, Kim S, Jeon M, Kim J. Development of a deviated focusing-based optical coherence microscope with a variable depth of focus for high-resolution imaging. OPTICS EXPRESS 2023; 31:1258-1268. [PMID: 36785165 DOI: 10.1364/oe.479709] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 12/12/2022] [Indexed: 06/18/2023]
Abstract
The aim of this study was to develop an optically deviated focusing-based variable depth-of-focus (DOF) oriented optical coherence microscopy (OCM) system to improve the DOF in high-resolution and precise focused imaging. In this study, an approach of varying beam diameter using deviated focusing was employed in the sample arm to enhance the DOF and to confirm precise focusing in OCM imaging. The optically deviated focusing technique was used to vary the focal point and DOF by altering the sample arm beam. The efficacy of the variable DOF imaging approach utilizing an optimized sample arm was confirmed by tissue-level imaging, where OCM images with varying DOF were obtained using deviated focusing. Experimentally confirmed lateral resolution of 2.19 µm was sufficient for the precise non-invasive visualization of abnormalities of fruit specimens. Thus, the proposed variable DOF-OCM system can be an alternative for precisely focused, high-resolution, and variable DOF imaging by improving the DOF in minimum lateral resolution variation.
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Kwon Y, Hong JH, Kang S, Lee H, Jo Y, Kim KH, Yoon S, Choi W. Computational conjugate adaptive optics microscopy for longitudinal through-skull imaging of cortical myelin. Nat Commun 2023; 14:105. [PMID: 36609405 PMCID: PMC9823103 DOI: 10.1038/s41467-022-35738-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 12/20/2022] [Indexed: 01/09/2023] Open
Abstract
Myelination processes are closely related to higher brain functions such as learning and memory. While their longitudinal observation has been crucial to understanding myelin-related physiology and various brain disorders, skull opening or thinning has been required to secure clear optical access. Here we present a high-speed reflection matrix microscope using a light source with a wavelength of 1.3 μm to reduce tissue scattering and aberration. Furthermore, we develop a computational conjugate adaptive optics algorithm designed for the recorded reflection matrix to optimally compensate for the skull aberrations. These developments allow us to realize label-free longitudinal imaging of cortical myelin through an intact mouse skull. The myelination processes of the same mice were observed from 3 to 10 postnatal weeks to the depth of cortical layer 4 with a spatial resolution of 0.79 μm. Our system will expedite the investigations on the role of myelination in learning, memory, and brain disorders.
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Affiliation(s)
- Yongwoo Kwon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Jin Hee Hong
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Sungsam Kang
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Hojun Lee
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Yonghyeon Jo
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Ki Hean Kim
- Department of Mechanical Engineering, Pohang University of Science and Technology, Pohang, 37673, Korea
| | - Seokchan Yoon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea. .,Department of Physics, Korea University, Seoul, 02855, Korea. .,School of Biomedical Convergence Engineering, Pusan National University, Yangsan, 50612, Korea.
| | - Wonshik Choi
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea. .,Department of Physics, Korea University, Seoul, 02855, Korea.
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Wang H, Gong D, Augustinack JC, Magnain C. Quantitative optical coherence microscopy of neuron morphology in human entorhinal cortex. Front Neurosci 2023; 17:1074660. [PMID: 37152599 PMCID: PMC10160389 DOI: 10.3389/fnins.2023.1074660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 03/06/2023] [Indexed: 05/09/2023] Open
Abstract
Introduction The size and shape of neurons are important features indicating aging and the pathology of neurodegenerative diseases. Despite the significant advances of optical microscopy, quantitative analysis of the neuronal features in the human brain remains largely incomplete. Traditional histology on thin slices bears tremendous distortions in three-dimensional reconstruction, the magnitude of which are often greater than the structure of interest. Recently development of tissue clearing techniques enable the whole brain to be analyzed in small animals; however, the application in the human remains challenging. Methods In this study, we present a label-free quantitative optical coherence microscopy (OCM) technique to obtain the morphological parameters of neurons in human entorhinal cortex (EC). OCM uses the intrinsic back-scattering property of tissue to identify individual neurons in 3D. The area, length, width, and orientation of individual neurons are quantified and compared between layer II and III in EC. Results The high-resolution mapping of neuron size, shape, and orientation shows significant differences between layer II and III neurons in EC. The results are validated by standard Nissl staining of the same samples. Discussion The quantitative OCM technique in our study offers a new solution to analyze variety of neurons and their organizations in the human brain, which opens new insights in advancing our understanding of neurodegenerative diseases.
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Yang J, Chang S, Chen IA, Kura S, Rosen GA, Saltiel NA, Huber BR, Varadarajan D, Balbastre Y, Magnain C, Chen SC, Fischl B, McKee AC, Boas DA, Wang H. Volumetric Characterization of Microvasculature in Ex Vivo Human Brain Samples By Serial Sectioning Optical Coherence Tomography. IEEE Trans Biomed Eng 2022; 69:3645-3656. [PMID: 35560084 PMCID: PMC9888394 DOI: 10.1109/tbme.2022.3175072] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
OBJECTIVE Serial sectioning optical coherence tomography (OCT) enables accurate volumetric reconstruction of several cubic centimeters of human brain samples. We aimed to identify anatomical features of the ex vivo human brain, such as intraparenchymal blood vessels and axonal fiber bundles, from the OCT data in 3D, using intrinsic optical contrast. METHODS We developed an automatic processing pipeline to enable characterization of the intraparenchymal microvascular network in human brain samples. RESULTS We demonstrated the automatic extraction of the vessels down to a 20 μm in diameter using a filtering strategy followed by a graphing representation and characterization of the geometrical properties of microvascular network in 3D. We also showed the ability to extend this processing strategy to extract axonal fiber bundles from the volumetric OCT image. CONCLUSION This method provides a viable tool for quantitative characterization of volumetric microvascular network as well as the axonal bundle properties in normal and pathological tissues of the ex vivo human brain.
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11
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Chiu KS, Tanifuji M, Sun CW, Rajagopalan UM, Nakamichi Y. Temporal mirror-symmetry in functional signals recorded from rat barrel cortex with optical coherence tomography. Cereb Cortex 2022; 33:4904-4914. [PMID: 36227198 DOI: 10.1093/cercor/bhac388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 08/31/2022] [Accepted: 09/01/2022] [Indexed: 11/14/2022] Open
Abstract
Functional optical coherence tomography (fOCT) detects activity-dependent light scattering changes in micro-structures of neural tissue, drawing attention as in vivo volumetric functional imaging technique at a sub-columnar level. There are 2 plausible origins for the light scattering changes: (i) hemodynamic responses such as changes in blood volume and in density of blood cells and (ii) reorientation of dipoles in cellular membrane. However, it has not been clarified which is the major contributor to fOCT signals. Furthermore, previous studies showed both increase and decrease of reflectivity as fOCT signals, making interpretation more difficult. We proposed combination of fOCT with Fourier imaging and adaptive statistics to the rat barrel cortex. Active voxels revealed barrels elongating throughout layers with mini-columns in superficial layers consistent with physiological studies, suggesting that active voxels revealed by fOCT reflect spatial patterns of activated neurons. These voxels included voxels with negative changes in reflectivity and those with positive changes in reflectivity. However, they were temporally mirror-symmetric, suggesting that they share common sources. It is hard to explain that hemodynamic responses elicit positive signals in some voxels and negative signals in the other. On the other hand, considering membrane dipoles, polarities of OCT signals can be positive and negative depending on orientations of scattering particles relative to the incident light. Therefore, the present study suggests that fOCT signals are induced by the reorientation of membrane dipoles.
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Affiliation(s)
- Kai-Shih Chiu
- Biomedical Optical Imaging Lab., Department of Photonics, College of Electrical and Computer Engineering, National Yang Ming Chiao Tung University, No. 1001, Daxue Rd., 30010, East Dist., Hsinchu, Taiwan, ROC
| | - Manabu Tanifuji
- Department of Life Science and Medical Bioscience, School of Advanced Science and Engineering, Waseda University, 2-2 Wakamatsu-cho, 162-8480, Shinjuku, Tokyo, Japan
| | - Chia-Wei Sun
- Biomedical Optical Imaging Lab., Department of Photonics, College of Electrical and Computer Engineering, National Yang Ming Chiao Tung University, No. 1001, Daxue Rd., 30010, East Dist., Hsinchu, Taiwan, ROC.,Institute of Biomedical Engineering, College of Electrical and Computer Engineering, National Yang Ming Chiao Tung University, No. 1001, Daxue Rd., 30010, East Dist., Hsinchu, Taiwan, ROC.,Medical Device Innovation and Translation Center, National Yang Ming Chiao Tung University, No. 155, Sec. 2, Linong St., 112304, Beitou Dist., Taipei, Taiwan, ROC
| | - Uma Maheswari Rajagopalan
- Department of Mechanical Engineering, Shibaura Institute of Technology, 3-7-5 Toyosu, 135-8548, Koto City, Tokyo, Japan
| | - Yu Nakamichi
- Department of Mechanical Engineering, Faculty of Engineering, Sanyo-Onoda City University, 1-1-1 Daigaku-dori, 756-0884, Sanyo-Onoda, Yamaguchi, Japan
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12
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Liu K, Yin M, Cai Z. Research and application advances in rehabilitation assessment of stroke. J Zhejiang Univ Sci B 2022; 23:625-641. [PMID: 35953757 DOI: 10.1631/jzus.b2100999] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Stroke has a high incidence and disability rate, and rehabilitation is an effective means to reduce the disability rate of patients. To systematize rehabilitation assessment, which is the foundation for rehabilitation therapy, we summarize the assessment methods commonly used in research and clinical applications, including the various types of stroke rehabilitation scales and their applicability, and related biomedical detection technologies, including surface electromyography (sEMG), motion analysis systems, transcranial magnetic stimulation (TMS), magnetic resonance imaging (MRI), and combinations of different techniques. We also introduce some assessment techniques that are still in the experimental phase, such as the prospective application of artificial intelligence (AI) with optical correlation tomography (OCT) in stroke rehabilitation. This review provides a useful bibliography for the assessment of not only the severity of stroke injury, but also the therapeutic effects of stroke rehabilitation, and establishes a solid base for the future development of stroke rehabilitation skills.
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Affiliation(s)
- Kezhou Liu
- Department of Biomedical Engineering, School of Automation (Artificial Intelligence), Hangzhou Dianzi University, Hangzhou 310018, China.
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13
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Lautman Z, Winetraub Y, Blacher E, Yu C, Terem I, Chibukhchyan A, Marshel JH, de la Zerda A. Intravital 3D visualization and segmentation of murine neural networks at micron resolution. Sci Rep 2022; 12:13130. [PMID: 35907928 PMCID: PMC9338956 DOI: 10.1038/s41598-022-14450-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 06/06/2022] [Indexed: 12/03/2022] Open
Abstract
Optical coherence tomography (OCT) allows label-free, micron-scale 3D imaging of biological tissues' fine structures with significant depth and large field-of-view. Here we introduce a novel OCT-based neuroimaging setting, accompanied by a feature segmentation algorithm, which enables rapid, accurate, and high-resolution in vivo imaging of 700 μm depth across the mouse cortex. Using a commercial OCT device, we demonstrate 3D reconstruction of microarchitectural elements through a cortical column. Our system is sensitive to structural and cellular changes at micron-scale resolution in vivo, such as those from injury or disease. Therefore, it can serve as a tool to visualize and quantify spatiotemporal brain elasticity patterns. This highly transformative and versatile platform allows accurate investigation of brain cellular architectural changes by quantifying features such as brain cell bodies' density, volume, and average distance to the nearest cell. Hence, it may assist in longitudinal studies of microstructural tissue alteration in aging, injury, or disease in a living rodent brain.
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Affiliation(s)
- Ziv Lautman
- Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA
- Department of Bioengineering, Stanford University, Stanford, CA, 94305, USA
- Molecular Imaging Program at Stanford, Stanford, CA, 94305, USA
| | - Yonatan Winetraub
- Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA
- Molecular Imaging Program at Stanford, Stanford, CA, 94305, USA
- Biophysics Program at Stanford, Stanford, CA, 94305, USA
- The Bio-X Program, Stanford, CA, 94305, USA
| | - Eran Blacher
- Department of Neurology and Neurological Sciences, Stanford School of Medicine, Stanford, CA, 94305, USA
- Department of Biological Chemistry, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus Givat-Ram, 9190401, Jerusalem, Israel
| | - Caroline Yu
- Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA
- Molecular Imaging Program at Stanford, Stanford, CA, 94305, USA
| | - Itamar Terem
- Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA
- Molecular Imaging Program at Stanford, Stanford, CA, 94305, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA
| | | | - James H Marshel
- CNC Department, Stanford University, Stanford, CA, 94305, USA
| | - Adam de la Zerda
- Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
- Molecular Imaging Program at Stanford, Stanford, CA, 94305, USA.
- Biophysics Program at Stanford, Stanford, CA, 94305, USA.
- The Bio-X Program, Stanford, CA, 94305, USA.
- Department of Electrical Engineering, Stanford University, Stanford, CA, 94305, USA.
- The Chan Zuckerberg Biohub, San Francisco, CA, 94158, USA.
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14
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Chang S, Varadarajan D, Yang J, Chen IA, Kura S, Magnain C, Augustinack JC, Fischl B, Greve DN, Boas DA, Wang H. Scalable mapping of myelin and neuron density in the human brain with micrometer resolution. Sci Rep 2022; 12:363. [PMID: 35013441 PMCID: PMC8748995 DOI: 10.1038/s41598-021-04093-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 12/03/2021] [Indexed: 12/23/2022] Open
Abstract
Optical coherence tomography (OCT) is an emerging 3D imaging technique that allows quantification of intrinsic optical properties such as scattering coefficient and back-scattering coefficient, and has proved useful in distinguishing delicate microstructures in the human brain. The origins of scattering in brain tissues are contributed by the myelin content, neuron size and density primarily; however, no quantitative relationships between them have been reported, which hampers the use of OCT in fundamental studies of architectonic areas in the human brain and the pathological evaluations of diseases. Here, we built a generalized linear model based on Mie scattering theory that quantitatively links tissue scattering to myelin content and neuron density in the human brain. We report a strong linear relationship between scattering coefficient and the myelin content that is retained across different regions of the brain. Neuronal cell body turns out to be a secondary contribution to the overall scattering. The optical property of OCT provides a label-free solution for quantifying volumetric myelin content and neuron cells in the human brain.
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Affiliation(s)
- Shuaibin Chang
- Department of Electrical and Computer Engineering, Boston University, 8 St Mary's St, Boston, 02215, USA
| | - Divya Varadarajan
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA
| | - Jiarui Yang
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston, 02215, USA
| | - Ichun Anderson Chen
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston, 02215, USA
| | - Sreekanth Kura
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston, 02215, USA
| | - Caroline Magnain
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA
| | - Jean C Augustinack
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA
| | - Bruce Fischl
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA
| | - Douglas N Greve
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA
| | - David A Boas
- Department of Biomedical Engineering, Boston University, 44 Cummington Mall, Boston, 02215, USA
- Department of Electrical and Computer Engineering, Boston University, 8 St Mary's St, Boston, 02215, USA
| | - Hui Wang
- Department of Radiology, Massachusetts General Hospital, A.A. Martinos Center for Biomedical Imaging, 13th Street, Boston, 02129, USA.
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15
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Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, El Khatib M, Emiliani V, Fomin-Thunemann N, Fainman Y, Fernandez-Alfonso T, Ferri CGL, Gilad A, Han X, Harris A, Hillman EMC, Hochgeschwender U, Holt MG, Ji N, Kılıç K, Lake EMR, Li L, Li T, Mächler P, Miller EW, Mesquita RC, Nadella KMNS, Nägerl UV, Nasu Y, Nimmerjahn A, Ondráčková P, Pavone FS, Perez Campos C, Peterka DS, Pisano F, Pisanello F, Puppo F, Sabatini BL, Sadegh S, Sakadzic S, Shoham S, Shroff SN, Silver RA, Sims RR, Smith SL, Srinivasan VJ, Thunemann M, Tian L, Tian L, Troxler T, Valera A, Vaziri A, Vinogradov SA, Vitale F, Wang LV, Uhlířová H, Xu C, Yang C, Yang MH, Yellen G, Yizhar O, Zhao Y. Neurophotonic tools for microscopic measurements and manipulation: status report. NEUROPHOTONICS 2022; 9:013001. [PMID: 35493335 PMCID: PMC9047450 DOI: 10.1117/1.nph.9.s1.013001] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Neurophotonics was launched in 2014 coinciding with the launch of the BRAIN Initiative focused on development of technologies for advancement of neuroscience. For the last seven years, Neurophotonics' agenda has been well aligned with this focus on neurotechnologies featuring new optical methods and tools applicable to brain studies. While the BRAIN Initiative 2.0 is pivoting towards applications of these novel tools in the quest to understand the brain, this status report reviews an extensive and diverse toolkit of novel methods to explore brain function that have emerged from the BRAIN Initiative and related large-scale efforts for measurement and manipulation of brain structure and function. Here, we focus on neurophotonic tools mostly applicable to animal studies. A companion report, scheduled to appear later this year, will cover diffuse optical imaging methods applicable to noninvasive human studies. For each domain, we outline the current state-of-the-art of the respective technologies, identify the areas where innovation is needed, and provide an outlook for the future directions.
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Affiliation(s)
- Ahmed S. Abdelfattah
- Brown University, Department of Neuroscience, Providence, Rhode Island, United States
| | - Sapna Ahuja
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Taner Akkin
- University of Minnesota, Department of Biomedical Engineering, Minneapolis, Minnesota, United States
| | - Srinivasa Rao Allu
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Joshua Brake
- Harvey Mudd College, Department of Engineering, Claremont, California, United States
| | - David A. Boas
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Erin M. Buckley
- Georgia Institute of Technology and Emory University, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
- Emory University, Department of Pediatrics, Atlanta, Georgia, United States
| | - Robert E. Campbell
- University of Tokyo, Department of Chemistry, Tokyo, Japan
- University of Alberta, Department of Chemistry, Edmonton, Alberta, Canada
| | - Anderson I. Chen
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Xiaojun Cheng
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Tomáš Čižmár
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Irene Costantini
- University of Florence, European Laboratory for Non-Linear Spectroscopy, Department of Biology, Florence, Italy
- National Institute of Optics, National Research Council, Rome, Italy
| | - Massimo De Vittorio
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Anna Devor
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Patrick R. Doran
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Mirna El Khatib
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | | | - Natalie Fomin-Thunemann
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Yeshaiahu Fainman
- University of California San Diego, Department of Electrical and Computer Engineering, La Jolla, California, United States
| | - Tomas Fernandez-Alfonso
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Christopher G. L. Ferri
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Ariel Gilad
- The Hebrew University of Jerusalem, Institute for Medical Research Israel–Canada, Department of Medical Neurobiology, Faculty of Medicine, Jerusalem, Israel
| | - Xue Han
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Andrew Harris
- Weizmann Institute of Science, Department of Brain Sciences, Rehovot, Israel
| | | | - Ute Hochgeschwender
- Central Michigan University, Department of Neuroscience, Mount Pleasant, Michigan, United States
| | - Matthew G. Holt
- University of Porto, Instituto de Investigação e Inovação em Saúde (i3S), Porto, Portugal
| | - Na Ji
- University of California Berkeley, Department of Physics, Berkeley, California, United States
| | - Kıvılcım Kılıç
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Evelyn M. R. Lake
- Yale School of Medicine, Department of Radiology and Biomedical Imaging, New Haven, Connecticut, United States
| | - Lei Li
- California Institute of Technology, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, Pasadena, California, United States
| | - Tianqi Li
- University of Minnesota, Department of Biomedical Engineering, Minneapolis, Minnesota, United States
| | - Philipp Mächler
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Evan W. Miller
- University of California Berkeley, Departments of Chemistry and Molecular & Cell Biology and Helen Wills Neuroscience Institute, Berkeley, California, United States
| | | | | | - U. Valentin Nägerl
- Interdisciplinary Institute for Neuroscience University of Bordeaux & CNRS, Bordeaux, France
| | - Yusuke Nasu
- University of Tokyo, Department of Chemistry, Tokyo, Japan
| | - Axel Nimmerjahn
- Salk Institute for Biological Studies, Waitt Advanced Biophotonics Center, La Jolla, California, United States
| | - Petra Ondráčková
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Francesco S. Pavone
- National Institute of Optics, National Research Council, Rome, Italy
- University of Florence, European Laboratory for Non-Linear Spectroscopy, Department of Physics, Florence, Italy
| | - Citlali Perez Campos
- Columbia University, Zuckerman Mind Brain Behavior Institute, New York, United States
| | - Darcy S. Peterka
- Columbia University, Zuckerman Mind Brain Behavior Institute, New York, United States
| | - Filippo Pisano
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Ferruccio Pisanello
- Istituto Italiano di Tecnologia, Center for Biomolecular Nanotechnologies, Arnesano, Italy
| | - Francesca Puppo
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Bernardo L. Sabatini
- Harvard Medical School, Howard Hughes Medical Institute, Department of Neurobiology, Boston, Massachusetts, United States
| | - Sanaz Sadegh
- University of California San Diego, Departments of Neurosciences, La Jolla, California, United States
| | - Sava Sakadzic
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Shy Shoham
- New York University Grossman School of Medicine, Tech4Health and Neuroscience Institutes, New York, New York, United States
| | - Sanaya N. Shroff
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - R. Angus Silver
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Ruth R. Sims
- Sorbonne University, INSERM, CNRS, Institut de la Vision, Paris, France
| | - Spencer L. Smith
- University of California Santa Barbara, Department of Electrical and Computer Engineering, Santa Barbara, California, United States
| | - Vivek J. Srinivasan
- New York University Langone Health, Departments of Ophthalmology and Radiology, New York, New York, United States
| | - Martin Thunemann
- Boston University, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Lei Tian
- Boston University, Departments of Electrical Engineering and Biomedical Engineering, Boston, Massachusetts, United States
| | - Lin Tian
- University of California Davis, Department of Biochemistry and Molecular Medicine, Davis, California, United States
| | - Thomas Troxler
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Antoine Valera
- University College London, Department of Neuroscience, Physiology and Pharmacology, London, United Kingdom
| | - Alipasha Vaziri
- Rockefeller University, Laboratory of Neurotechnology and Biophysics, New York, New York, United States
- The Rockefeller University, The Kavli Neural Systems Institute, New York, New York, United States
| | - Sergei A. Vinogradov
- University of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Biophysics, Philadelphia, Pennsylvania, United States
- University of Pennsylvania, School of Arts and Sciences, Department of Chemistry, Philadelphia, Pennsylvania, United States
| | - Flavia Vitale
- Center for Neuroengineering and Therapeutics, Departments of Neurology, Bioengineering, Physical Medicine and Rehabilitation, Philadelphia, Pennsylvania, United States
| | - Lihong V. Wang
- California Institute of Technology, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, Pasadena, California, United States
| | - Hana Uhlířová
- Institute of Scientific Instruments of the Czech Academy of Sciences, Brno, Czech Republic
| | - Chris Xu
- Cornell University, School of Applied and Engineering Physics, Ithaca, New York, United States
| | - Changhuei Yang
- California Institute of Technology, Departments of Electrical Engineering, Bioengineering and Medical Engineering, Pasadena, California, United States
| | - Mu-Han Yang
- University of California San Diego, Department of Electrical and Computer Engineering, La Jolla, California, United States
| | - Gary Yellen
- Harvard Medical School, Department of Neurobiology, Boston, Massachusetts, United States
| | - Ofer Yizhar
- Weizmann Institute of Science, Department of Brain Sciences, Rehovot, Israel
| | - Yongxin Zhao
- Carnegie Mellon University, Department of Biological Sciences, Pittsburgh, Pennsylvania, United States
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16
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Sen D, Classen A, Fernández A, Grüner-Nielsen L, Gibbs HC, Esmaeili S, Hemmer P, Baltuska A, Sokolov AV, Leitgeb RA, Verhoef AJ. Extended focal depth Fourier domain optical coherence microscopy with a Bessel-beam - LP 02 mode - from a higher order mode fiber. BIOMEDICAL OPTICS EXPRESS 2021; 12:7327-7337. [PMID: 35003836 PMCID: PMC8713682 DOI: 10.1364/boe.442081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 10/25/2021] [Accepted: 10/25/2021] [Indexed: 05/27/2023]
Abstract
We present a robust fiber-based setup for Bessel-like beam extended depth-of-focus Fourier-domain optical coherence microscopy, where the Bessel-like beam is generated in a higher order mode fiber module. In this module a stable guided LP02 core mode is selectively excited by a long period grating written in the higher order mode fiber. Imaging performance of this system in terms of lateral resolution and depth of focus was analyzed using samples of suspended microbeads and compared to the case where illumination is provided by the fundamental LP01 mode of a single mode fiber. Illumination with the LP02 mode allowed for a lateral resolution down to 2.5 µm as compared to 4.5 µm achieved with the LP01 mode of the single mode fiber. A three-fold enhancement of the depth of focus compared to a Gaussian beam with equally tight focus is achieved with the LP02 mode. Analysis of the theoretical lateral point spread functions for the case of LP01 and LP02 illumination agrees well with the experimental data. As the design space of waveguides and long-period gratings allows for further optimization of the beam parameters of the generated Bessel-like beams in an all-fiber module, this approach offers a robust and yet flexible alternative to free-space optics approaches or the use of conical fiber tips.
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Affiliation(s)
- Dipankar Sen
- Texas A&M University, College Station, TX 77843, USA
| | - Anton Classen
- Texas A&M University, College Station, TX 77843, USA
| | | | - Lars Grüner-Nielsen
- Danish Optical Fiber Innovation, Åvendingen 22A, 2700 Brønshøj, Denmark
- Technical University of Denmark, Department of Photonics Engineering, 2800 Kgs. Lyngby, Denmark
| | | | | | - Philip Hemmer
- Texas A&M University, College Station, TX 77843, USA
| | - Andrius Baltuska
- Photonics Institute, TU Wien, Gusshausstraße 27-29/387, 1040 Vienna, Austria
| | | | - Rainer A. Leitgeb
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Währinger Gürtel 18-20/4L, 1090 Vienna, Austria
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17
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Petrescu SMS, Țuculină MJ, Osiac E, Camen A, Sălan AI, Mărășescu FI, Nicola AG, Bechir ES, Dascălu IT. Use of optical coherence tomography in orthodontics. Exp Ther Med 2021; 22:1424. [PMID: 34707705 PMCID: PMC8543239 DOI: 10.3892/etm.2021.10859] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 09/07/2021] [Indexed: 11/24/2022] Open
Abstract
Optical coherence tomography (OCT) is a modern imaging method with applicability in orthodontics. In recent years, there has been an increasing trend in the use of ceramic brackets. The aim of the present study was to investigate the effects of bonding metallic and ceramic brackets on tooth enamel, using optical coherence tomography. For this purpose, 20 permanent teeth we bonded and were subsequently debonded using a side cutter or anterior bracket removal pliers. Using the OCT technique, the enamel, the amount of adhesive remaining and the bracket fragments remaining on the tooth surface were analyzed following the debonding procedure. It was demonstrated that enamel cracks were present only in the samples bonded with ceramic brackets. At the same time, it was noted that the type of pliers did not affect the incidence and extent of damage to the enamel. The type of debonding technique (using the side cutter or the anterior removal pliers) used did not markedly affect the amount of adhesive remaining on the teeth. Thus, as demonstrated herein, by analyzing the enamel structure through the use of OCT, the quality of the processes and the materials used for manufacturing brackets can be increased.
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Affiliation(s)
| | - Mihaela Jana Țuculină
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
| | - Eugen Osiac
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
| | - Adrian Camen
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
| | - Alex Ioan Sălan
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
| | | | - Andreea Gabriela Nicola
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
| | - Edwin Sever Bechir
- Faculty of Dentistry, University of Medicine and Pharmacy of Târgu Mureș, 540142 Târgu Mureș, Romania
| | - Ionela Teodora Dascălu
- Faculty of Dentistry, University of Medicine and Pharmacy of Craiova, 200349 Craiova, Romania
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18
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Wu M, Liu S, Leartprapun N, Adie S. Investigation of multiple scattering in space and spatial-frequency domains: with application to the analysis of aberration-diverse optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2021; 12:7478-7499. [PMID: 35003847 PMCID: PMC8713691 DOI: 10.1364/boe.439395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/25/2021] [Accepted: 10/26/2021] [Indexed: 05/12/2023]
Abstract
Optical microscopy suffers from multiple scattering (MS), which limits the optical imaging depth into scattering media. We previously demonstrated aberration-diverse optical coherence tomography (AD-OCT) for MS suppression, based on the principle that for datasets acquired with different aberration states of the imaging beam, MS backgrounds become decorrelated while single scattering (SS) signals remain correlated, so that a simple coherent average can be used to enhance the SS signal over the MS background. Here, we propose a space/spatial-frequency domain analysis framework for the investigation of MS in OCT, and apply the framework to compare AD-OCT (using astigmatic beams) to standard Gaussian-beam OCT via experiments in scattering tissue phantoms. Utilizing this framework, we found that increasing the astigmatic magnitude produced a large drop in both MS background and SS signal, but the decay experienced by the MS background was larger than the SS signal. Accounting for the decay in both SS signal and MS background, the overall signal-to-background ratio (SBR) of AD-OCT was similar to the Gaussian control after about 10 coherent averages, when deeper line foci was positioned at the plane-of-interest and the line foci spacing was smaller than or equal to 80 µm. For an even larger line foci spacing of 160 µm, AD-OCT resulted in a lower SBR than the Gaussian-beam control. This work provides an analysis framework to gain deeper levels of understanding and insights for the future study of MS and MS suppression in both the space and spatial-frequency domains.
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Affiliation(s)
- Meiqi Wu
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Nichaluk Leartprapun
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Steven Adie
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
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19
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Tang P, Wang RK. 1700 nm broadband laser source enables deep brain optical biopsy. LIGHT, SCIENCE & APPLICATIONS 2021; 10:205. [PMID: 34608128 PMCID: PMC8490362 DOI: 10.1038/s41377-021-00652-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
An OCM system that employs a 1700 nm broadband laser source enables cellular level deep brain imaging, providing cytoarchitectural and myeloarchitectural information across cortical depth, without requiring tissue slicing. CC – corpus callosum. [Image: see text]
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Affiliation(s)
- Peijun Tang
- Department of Bioengineering, University of Washington, 3720 15th Ave NE, Seattle, WA, 98195, USA
| | - Ruikang K Wang
- Department of Bioengineering, University of Washington, 3720 15th Ave NE, Seattle, WA, 98195, USA.
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20
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Liu K, Li J, Raghunathan R, Zhao H, Li X, Wong STC. The Progress of Label-Free Optical Imaging in Alzheimer's Disease Screening and Diagnosis. Front Aging Neurosci 2021; 13:699024. [PMID: 34366828 PMCID: PMC8341907 DOI: 10.3389/fnagi.2021.699024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 07/02/2021] [Indexed: 01/13/2023] Open
Abstract
As the major neurodegenerative disease of dementia, Alzheimer's disease (AD) has caused an enormous social and economic burden on society. Currently, AD has neither clear pathogenesis nor effective treatments. Positron emission tomography (PET) and magnetic resonance imaging (MRI) have been verified as potential tools for diagnosing and monitoring Alzheimer's disease. However, the high costs, low spatial resolution, and long acquisition time limit their broad clinical utilization. The gold standard of AD diagnosis routinely used in research is imaging AD biomarkers with dyes or other reagents, which are unsuitable for in vivo studies owing to their potential toxicity and prolonged and costly process of the U.S. Food and Drug Administration (FDA) approval for human use. Furthermore, these exogenous reagents might bring unwarranted interference to mechanistic studies, causing unreliable results. Several label-free optical imaging techniques, such as infrared spectroscopic imaging (IRSI), Raman spectroscopic imaging (RSI), optical coherence tomography (OCT), autofluorescence imaging (AFI), optical harmonic generation imaging (OHGI), etc., have been developed to circumvent this issue and made it possible to offer an accurate and detailed analysis of AD biomarkers. In this review, we present the emerging label-free optical imaging techniques and their applications in AD, along with their potential and challenges in AD diagnosis.
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Affiliation(s)
- Kai Liu
- Translational Biophotonics Laboratory, Systems Medicine and Bioengineering Department, Houston Methodist Cancer Center, Houston, TX, United States
- Department of Gastrointestinal Surgery, The Third Xiangya Hospital of Central South University, Changsha, China
| | - Jiasong Li
- Translational Biophotonics Laboratory, Systems Medicine and Bioengineering Department, Houston Methodist Cancer Center, Houston, TX, United States
- T. T. and W. F. Chao Center for BRAIN, Houston Methodist Hospital, Houston, TX, United States
| | - Raksha Raghunathan
- Translational Biophotonics Laboratory, Systems Medicine and Bioengineering Department, Houston Methodist Cancer Center, Houston, TX, United States
- T. T. and W. F. Chao Center for BRAIN, Houston Methodist Hospital, Houston, TX, United States
| | - Hong Zhao
- Translational Biophotonics Laboratory, Systems Medicine and Bioengineering Department, Houston Methodist Cancer Center, Houston, TX, United States
| | - Xuping Li
- T. T. and W. F. Chao Center for BRAIN, Houston Methodist Hospital, Houston, TX, United States
| | - Stephen T. C. Wong
- Translational Biophotonics Laboratory, Systems Medicine and Bioengineering Department, Houston Methodist Cancer Center, Houston, TX, United States
- T. T. and W. F. Chao Center for BRAIN, Houston Methodist Hospital, Houston, TX, United States
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21
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Zhu J, Freitas HR, Maezawa I, Jin LW, Srinivasan VJ. 1700 nm optical coherence microscopy enables minimally invasive, label-free, in vivo optical biopsy deep in the mouse brain. LIGHT, SCIENCE & APPLICATIONS 2021; 10:145. [PMID: 34262015 PMCID: PMC8280201 DOI: 10.1038/s41377-021-00586-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 06/25/2021] [Accepted: 06/29/2021] [Indexed: 05/05/2023]
Abstract
In vivo, minimally invasive microscopy in deep cortical and sub-cortical regions of the mouse brain has been challenging. To address this challenge, we present an in vivo high numerical aperture optical coherence microscopy (OCM) approach that fully utilizes the water absorption window around 1700 nm, where ballistic attenuation in the brain is minimized. Key issues, including detector noise, excess light source noise, chromatic dispersion, and the resolution-speckle tradeoff, are analyzed and optimized. Imaging through a thinned-skull preparation that preserves intracranial space, we present volumetric imaging of cytoarchitecture and myeloarchitecture across the entire depth of the mouse neocortex, and some sub-cortical regions. In an Alzheimer's disease model, we report that findings in superficial and deep cortical layers diverge, highlighting the importance of deep optical biopsy. Compared to other microscopic techniques, our 1700 nm OCM approach achieves a unique combination of intrinsic contrast, minimal invasiveness, and high resolution for deep brain imaging.
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Affiliation(s)
- Jun Zhu
- Department of Biomedical Engineering, University of California Davis, Davis, CA, 95616, USA
| | - Hercules Rezende Freitas
- Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, 95817, USA
| | - Izumi Maezawa
- Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, 95817, USA
| | - Lee-Way Jin
- Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, 95817, USA
| | - Vivek J Srinivasan
- Department of Biomedical Engineering, University of California Davis, Davis, CA, 95616, USA.
- Department of Ophthalmology and Vision Science, School of Medicine, University of California Davis, Sacramento, CA, 95817, USA.
- Department of Ophthalmology, NYU Langone Health, New York, NY, 10017, USA.
- Department of Radiology, NYU Langone Health, New York, NY, 10016, USA.
- Tech4Health Institute, NYU Langone Health, New York, NY, 10010, USA.
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22
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Osiac E, Mitran SI, Manea CN, Cojocaru A, Rosu G, Osiac M, Pirici DN, Bălșeanu AT, Cătălin B. Optical coherence tomography microscopy in experimental traumatic brain injury. Microsc Res Tech 2021; 84:422-431. [PMID: 33009699 PMCID: PMC7891427 DOI: 10.1002/jemt.23599] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Revised: 08/19/2020] [Accepted: 08/30/2020] [Indexed: 12/28/2022]
Abstract
Worldwide elderly traumatic brain injury (TBI) patients tend to become an increasing burden to the society. Thus, a faster and less expensive way of evaluating TBI victims is needed. In the present study we investigated if optical coherence tomography (OCT) could be used as such a method. By using an animal model, we established if OCT can detect cortical changes in the acute phase of a penetrating TBI, in young (5-7 months) and old (20-22 months) rats. Due to the long-term evolution of TBI's, we wanted to investigate to what extent OCT could detect changes within the cortex in the chronic phase. Adult (7-12 months) male rats were used. Surprisingly, OCT imaging of the normal hemisphere was able to discriminate age-related differences in the mean gray values (MGV) of recorded pixels (p = .032). Furthermore, in the acute phase of TBI, OCT images recorded at 24 hr after the injury showed differences between the apparent damaged area of young and aged animals. Changes of MGV and skewness were only recorded 48 hr after injury. Monitoring the chronical evolution of the TBI with OCT revealed changes over time exceeding the normal range recorded for MGV, skewness and kurtosis, 14 and 21 days after TBI. Although in the present study we still used an extremely invasive approach, as technology improves, less invasive and non-harmful ways of recording OCT may allow for an objective way to detect changes within the brain structure after brain injuries.
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Affiliation(s)
- Eugen Osiac
- Experimental Research Center for Normal and Pathological AgingUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
- Department of BiophysicsUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Smaranda Ioana Mitran
- Experimental Research Center for Normal and Pathological AgingUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
- Department of PhysiologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Cătălin Nicolae Manea
- Experimental Research Center for Normal and Pathological AgingUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
- Department of Informatics, Communication and StatisticsUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Alexandru Cojocaru
- Department of PhysiologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Gabriela‐Camelia Rosu
- Department of Research MethodologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Mariana Osiac
- Department of Physics, Faculty of ScienceUniversity of CraiovaCraiovaRomania
| | - Daniel Nicolae Pirici
- Department of Research MethodologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Adrian Tudor Bălșeanu
- Experimental Research Center for Normal and Pathological AgingUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
- Department of PhysiologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
| | - Bogdan Cătălin
- Experimental Research Center for Normal and Pathological AgingUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
- Department of PhysiologyUniversity of Medicine and Pharmacy of CraiovaCraiovaRomania
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23
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Soliton microcomb based spectral domain optical coherence tomography. Nat Commun 2021; 12:427. [PMID: 33462200 PMCID: PMC7813855 DOI: 10.1038/s41467-020-20404-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 11/05/2020] [Indexed: 12/22/2022] Open
Abstract
Spectral domain optical coherence tomography (OCT) is a widely employed, minimally invasive bio-medical imaging technique, which requires a broadband light source, typically implemented by super-luminescent diodes. Recent advances in soliton based photonic integrated frequency combs (soliton microcombs) have enabled the development of low-noise, broadband chipscale frequency comb sources, whose potential for OCT imaging has not yet been unexplored. Here, we explore the use of dissipative Kerr soliton microcombs in spectral domain OCT and show that, by using photonic chipscale Si3N4 resonators in conjunction with 1300 nm pump lasers, spectral bandwidths exceeding those of commercial OCT sources are possible. We characterized the exceptional noise properties of our source (in comparison to conventional OCT sources) and demonstrate that the soliton states in microresonators exhibit a residual intensity noise floor at high offset frequencies that is ca. 3 dB lower than a traditional OCT source at identical power, and can exhibit significantly lower noise performance for powers at the milli-Watt level. Moreover, we demonstrate that classical amplitude noise of all soliton comb teeth are correlated, i.e., common mode, in contrast to superluminescent diodes or incoherent microcomb states, which opens a new avenue to improve imaging speed and performance beyond the thermal noise limit. Superluminescent diodes, that provide a broadband spectrum are typically used in spectral domain coherence tomography. Here, the authors use chipscale silicon nitride resonators to generate soliton microcombs with a lower noise flor that could substitute the diode sources.
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24
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Wei W, Zhang Q, Rayner SG, Qin W, Cheng Y, Wang F, Zheng Y, Wang RK. Automated vessel diameter quantification and vessel tracing for OCT angiography. JOURNAL OF BIOPHOTONICS 2020; 13:e202000248. [PMID: 32857462 PMCID: PMC7857721 DOI: 10.1002/jbio.202000248] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Revised: 08/21/2020] [Accepted: 08/25/2020] [Indexed: 06/11/2023]
Abstract
Optical coherence tomography angiography (OCTA) is capable of non-invasively imaging the vascular networks within circulatory tissue beds in vivo. Following improvements in OCTA image quality, it is now possible to extract vascular parameters from imaging data to potentially facilitate the diagnosis and treatment of human disease. In this paper, we present a method for automated mapping of vessel diameter down to the individual capillary level, through gradient-guided minimum radial distance (MRD). During validation using well-characterized microfluidic flow phantoms, this method demonstrated superior consistency and a nearly threefold decrease in error when compared to currently accepted techniques. In addition, the MRD technique exhibited a high tolerance to rotation of the vasculature pattern. We also incorporated a modified A* path searching algorithm to trace vessel branches and calculate the diameter of each branch from the OCTA images. After validation in vitro, we applied these algorithms to the in vivo setting through analysis of mouse cortical vasculature. Our algorithm returned results that followed Murray's law, until reaching the capillary level, agreeing well with known physiological data. From our tracing process, vessel tortuosity and branching angle could also be measured. Our techniques provide a platform for the automated evaluation of the vasculature and may aid in diagnosis of vascular diseases, especially those resulting in regional early-stage morphological changes.
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Affiliation(s)
- Wei Wei
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Qinqin Zhang
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Samuel G. Rayner
- Department of Bioengineering, University of Washington, Seattle, Washington
- Department of Medicine, University of Washington, Seattle, Washington
| | - Wan Qin
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Yuxuan Cheng
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Fupeng Wang
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Ying Zheng
- Department of Bioengineering, University of Washington, Seattle, Washington
| | - Ruikang K. Wang
- Department of Bioengineering, University of Washington, Seattle, Washington
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25
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Yoon S, Lee H, Hong JH, Lim YS, Choi W. Laser scanning reflection-matrix microscopy for aberration-free imaging through intact mouse skull. Nat Commun 2020; 11:5721. [PMID: 33184297 PMCID: PMC7665219 DOI: 10.1038/s41467-020-19550-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 10/14/2020] [Indexed: 11/09/2022] Open
Abstract
A mouse skull is a barrier for high-resolution optical imaging because its thick and inhomogeneous internal structures induce complex aberrations varying drastically from position to position. Invasive procedures creating either thinned-skull or open-skull windows are often required for the microscopic imaging of brain tissues underneath. Here, we propose a label-free imaging modality termed laser scanning reflection-matrix microscopy for recording the amplitude and phase maps of reflected waves at non-confocal points as well as confocal points. The proposed method enables us to find and computationally correct up to 10,000 angular modes of aberrations varying at every 10 × 10 µm2 patch in the sample plane. We realized reflectance imaging of myelinated axons in vivo underneath an intact mouse skull, with an ideal diffraction-limited spatial resolution of 450 nm. Furthermore, we demonstrated through-skull two-photon fluorescence imaging of neuronal dendrites and their spines by physically correcting the aberrations identified from the reflection matrix.
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Affiliation(s)
- Seokchan Yoon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Hojun Lee
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Jin Hee Hong
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea.,Department of Physics, Korea University, Seoul, 02855, Korea
| | - Yong-Sik Lim
- Department of Nano Science and Mechanical Engineering and Nanotechnology Research Center, Konkuk University, Chungbuk, Korea
| | - Wonshik Choi
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul, 02841, Korea. .,Department of Physics, Korea University, Seoul, 02855, Korea.
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26
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Cui J, Turcotte R, Hampson KM, Wincott M, Schmidt CC, Emptage NJ, Charalampaki P, Booth MJ. Compact and contactless reflectance confocal microscope for neurosurgery. BIOMEDICAL OPTICS EXPRESS 2020; 11:4772-4785. [PMID: 32923077 PMCID: PMC7449734 DOI: 10.1364/boe.397832] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 06/19/2020] [Accepted: 06/22/2020] [Indexed: 05/08/2023]
Abstract
Visual guidance at the cellular level during neurosurgical procedures is essential for complete tumour resection. We present a compact reflectance confocal microscope with a 20 mm working distance that provided <1.2 µm spatial resolution over a 600 µm × 600 µm field of view in the near-infrared region. A physical footprint of 200 mm × 550 mm was achieved using only standard off-the-shelf components. Theoretical performance of the optical design was first evaluated via commercial Zemax software. Then three specimens from rodents: fixed brain, frozen calvaria and live hippocampal slices, were used to experimentally assess system capability and robustness. Results show great potential for the proposed system to be translated into use as a next generation label-free and contactless neurosurgical microscope.
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Affiliation(s)
- Jiahe Cui
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Raphaël Turcotte
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Karen M. Hampson
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Matthew Wincott
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
| | - Carla C. Schmidt
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Nigel J. Emptage
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford OX1 3QT, United Kingdom
| | - Patra Charalampaki
- Department of Neurosurgery, Cologne Medical Center, University Witten-Herdecke, Witten 58455, Germany
| | - Martin J. Booth
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, United Kingdom
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27
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Lichtenegger A, Gesperger J, Niederleithner M, Ginner L, Woehrer A, Drexler W, Baumann B, Leitgeb RA, Salas M. Ex-vivo Alzheimer's disease brain tissue investigation: a multiscale approach using 1060-nm swept source optical coherence tomography for a direct correlation to histology. NEUROPHOTONICS 2020; 7:035004. [PMID: 32855993 PMCID: PMC7441220 DOI: 10.1117/1.nph.7.3.035004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 08/04/2020] [Indexed: 06/11/2023]
Abstract
Significance: Amyloid-beta ( A - β ) plaques are pathological protein deposits formed in the brain of Alzheimer's disease (AD) patients upon disease progression. Further research is needed to elucidate the complex underlying mechanisms involved in their formation using label-free, tissue preserving, and volumetric techniques. Aim: The aim is to achieve a one-to-one correlation of optical coherence tomography (OCT) data to histological micrographs of brain tissue using 1060-nm swept source OCT. Approach: A - β plaques were investigated in ex-vivo AD brain tissue using OCT with the capability of switching between two magnifications. For the exact correlation to histology, a 3D-printed tool was designed to generate samples with parallel flat surfaces. Large field-of-view (FoV) and sequentially high-resolution volumes at different locations were acquired. The large FoV served to align the OCT to histology images; the high-resolution images were used to visualize fine details. Results: The instrument and the presented method enabled an accurate correlation of histological micrographs with OCT data. A - β plaques were identified as hyperscattering features in both FoV OCT modalities. The plaques identified in volumetric OCT data were in good agreement with immunohistochemically derived micrographs. Conclusion: OCT combined with the 3D-printed tool is a promising approach for label-free, nondestructive, volumetric, and fast tissue analysis.
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Affiliation(s)
- Antonia Lichtenegger
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Johanna Gesperger
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- Medical University of Vienna, Division of Neuropathology and Neurochemistry, Department of Neurology, Vienna, Austria
| | - Michael Niederleithner
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Laurin Ginner
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- AIT Austrian Institute of Technology GmbH, Vienna, Austria
| | - Adelheid Woehrer
- Medical University of Vienna, Division of Neuropathology and Neurochemistry, Department of Neurology, Vienna, Austria
| | - Wolfgang Drexler
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Bernhard Baumann
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Rainer A. Leitgeb
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- Medical University of Vienna, Christian Doppler Laboratory for Innovative Optical Imaging and its Translation to Medicine, Vienna, Austria
| | - Matthias Salas
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- Medical University of Vienna, Division of Neuropathology and Neurochemistry, Department of Neurology, Vienna, Austria
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28
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Min E, Ban S, Lee J, Vavilin A, Baek S, Jung S, Ahn Y, Park K, Shin S, Han S, Cho H, Lee-Kwon W, Kim J, Lee CJ, Jung W. Serial optical coherence microscopy for label-free volumetric histopathology. Sci Rep 2020; 10:6711. [PMID: 32317719 PMCID: PMC7174280 DOI: 10.1038/s41598-020-63460-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 03/18/2020] [Indexed: 11/09/2022] Open
Abstract
The observation of histopathology using optical microscope is an essential procedure for examination of tissue biopsies or surgically excised specimens in biological and clinical laboratories. However, slide-based microscopic pathology is not suitable for visualizing the large-scale tissue and native 3D organ structure due to its sampling limitation and shallow imaging depth. Here, we demonstrate serial optical coherence microscopy (SOCM) technique that offers label-free, high-throughput, and large-volume imaging of ex vivo mouse organs. A 3D histopathology of whole mouse brain and kidney including blood vessel structure is reconstructed by deep tissue optical imaging in serial sectioning techniques. Our results demonstrate that SOCM has unique advantages as it can visualize both native 3D structures and quantitative regional volume without introduction of any contrast agents.
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Affiliation(s)
- Eunjung Min
- Max Planck Institute for Biological Cybernetics, 72076, Tübingen, Germany
| | - Sungbea Ban
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Junwon Lee
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Andrey Vavilin
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Songyee Baek
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Sunwoo Jung
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Yujin Ahn
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Kibeom Park
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Sungwon Shin
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - SoHyun Han
- Martinos Center for Biomedical Imaging, Charlestown, MA, 02129, United States
| | - Hyungjoon Cho
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Whaseon Lee-Kwon
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea
| | - Jeehyun Kim
- School of Electronics Engineering, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - C Justin Lee
- Center for Cognition and Sociality, Institute for Basic Science, Daejeon, 34126, Republic of Korea
| | - Woonggyu Jung
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, 44919, Republic of Korea.
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29
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Wang S, Larina IV, Larin KV. Label-free optical imaging in developmental biology [Invited]. BIOMEDICAL OPTICS EXPRESS 2020; 11:2017-2040. [PMID: 32341864 PMCID: PMC7173889 DOI: 10.1364/boe.381359] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 01/30/2020] [Accepted: 02/25/2020] [Indexed: 05/03/2023]
Abstract
Application of optical imaging in developmental biology marks an exciting frontier in biomedical optics. Optical resolution and imaging depth allow for investigation of growing embryos at subcellular, cellular, and whole organism levels, while the complexity and variety of embryonic processes set multiple challenges stimulating the development of various live dynamic embryonic imaging approaches. Among other optical methods, label-free optical techniques attract an increasing interest as they allow investigation of developmental mechanisms without application of exogenous markers or fluorescent reporters. There has been a boost in development of label-free optical imaging techniques for studying embryonic development in animal models over the last decade, which revealed new information about early development and created new areas for investigation. Here, we review the recent progress in label-free optical embryonic imaging, discuss specific applications, and comment on future developments at the interface of photonics, engineering, and developmental biology.
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Affiliation(s)
- Shang Wang
- Department of Biomedical Engineering, Stevens Institute of Technology, 1 Castle Point Terrace, Hoboken, NJ 07030, USA
| | - Irina V. Larina
- Department of Molecular Physiology and Biophysics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA
| | - Kirill V. Larin
- Department of Molecular Physiology and Biophysics, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA
- Department of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, TX 77204, USA
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30
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Almog IF, Chen F, Senova S, Fomenko A, Gondard E, Sacher WD, Lozano AM, Poon JKS. Full-field swept-source optical coherence tomography and neural tissue classification for deep brain imaging. JOURNAL OF BIOPHOTONICS 2020; 13:e201960083. [PMID: 31710771 PMCID: PMC7065632 DOI: 10.1002/jbio.201960083] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Revised: 10/19/2019] [Accepted: 11/06/2019] [Indexed: 05/28/2023]
Abstract
Optical coherence tomography can differentiate brain regions with intrinsic contrast and at a micron scale resolution. Such a device can be particularly useful as a real-time neurosurgical guidance tool. We present, to our knowledge, the first full-field swept-source optical coherence tomography system operating near a wavelength of 1310 nm. The proof-of-concept system was integrated with an endoscopic probe tip, which is compatible with deep brain stimulation keyhole neurosurgery. Neuroimaging experiments were performed on ex vivo brain tissues and in vivo in rat brains. Using classification algorithms involving texture features and optical attenuation, images were successfully classified into three brain tissue types.
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Affiliation(s)
- Ilan Felts Almog
- Edward S. Rogers Sr. Department of Electrical and Computer EngineeringUniversity of TorontoTorontoOntarioCanada
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
| | - Fu‐Der Chen
- Edward S. Rogers Sr. Department of Electrical and Computer EngineeringUniversity of TorontoTorontoOntarioCanada
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
| | - Suhan Senova
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
- Department of NeurosurgeryCentre Hospitalier Universitaire Henri‐Mondor, APHPCréteilFrance
- INSERM Unit 955, Institut Mondor de Recherche Biomédicale, Université Paris‐EstCréteilFrance
| | - Anton Fomenko
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
| | - Elise Gondard
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
| | - Wesley D. Sacher
- Edward S. Rogers Sr. Department of Electrical and Computer EngineeringUniversity of TorontoTorontoOntarioCanada
- Max Planck Institute of Microstructure PhysicsHalleGermany
| | - Andres M. Lozano
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
- Division of Neurosurgery, Department of SurgeryToronto Western HospitalTorontoOntarioCanada
| | - Joyce K. S. Poon
- Edward S. Rogers Sr. Department of Electrical and Computer EngineeringUniversity of TorontoTorontoOntarioCanada
- Krembil Research InstituteToronto Western HospitalTorontoOntarioCanada
- Max Planck Institute of Microstructure PhysicsHalleGermany
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31
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Zhang Y, Yao L, Yang F, Yang S, Edathodathil A, Xi W, Roe AW, Li P. INS-fOCT: a label-free, all-optical method for simultaneously manipulating and mapping brain function. NEUROPHOTONICS 2020; 7:015014. [PMID: 32258220 PMCID: PMC7108754 DOI: 10.1117/1.nph.7.1.015014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 03/18/2020] [Indexed: 06/11/2023]
Abstract
Significance: Current approaches to stimulating and recording from the brain have combined electrical or optogenetic stimulation with recording approaches, such as two-photon, electrophysiology (EP), and optical intrinsic signal imaging (OISI). However, we lack a label-free, all-optical approach with high spatial and temporal resolution. Aim: To develop a label-free, all-optical method that simultaneously manipulates and images brain function using pulsed near-infrared light (INS) and functional optical coherence tomography (fOCT), respectively. Approach: We built a coregistered INS, fOCT, and OISI system. OISI and EP recordings were employed to validate the fOCT signals. Results: The fOCT signal was reliable and regional, and the area of fOCT signal corresponded with the INS-activated region. The fOCT signal was in synchrony with the INS onset time with a delay of ∼ 30 ms . The magnitude of fOCT signal exhibited a linear correlation with the INS radiant exposure. The significant correlation between the fOCT signal and INS was further supported by OISI and EP recordings. Conclusions: The proposed fiber-based, all-optical INS-fOCT method allows simultaneous stimulation and mapping without the risk of interchannel cross-talk and the requirement of contrast injection and viral transfection and offers a deep penetration depth and high resolution.
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Affiliation(s)
- Ying Zhang
- Zhejiang University, College of Optical Science and Engineering, State Key Lab of Modern Optical Instrumentation, Hangzhou, China
- Zhejiang University, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Hangzhou, Zhejiang, China
| | - Lin Yao
- Zhejiang University, College of Optical Science and Engineering, State Key Lab of Modern Optical Instrumentation, Hangzhou, China
| | - Fen Yang
- Zhejiang University, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Hangzhou, Zhejiang, China
| | - Shanshan Yang
- Zhejiang University, College of Optical Science and Engineering, State Key Lab of Modern Optical Instrumentation, Hangzhou, China
| | - Akshay Edathodathil
- Zhejiang University, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Hangzhou, Zhejiang, China
| | - Wang Xi
- Zhejiang University, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Hangzhou, Zhejiang, China
| | - Anna Wang Roe
- Zhejiang University, Interdisciplinary Institute of Neuroscience and Technology, School of Medicine, Hangzhou, Zhejiang, China
- Zhejiang University, Key Laboratory of Biomedical Engineering of Ministry of Education, Hangzhou, Zhejiang, China
- Oregon Health & Sciences University, Oregon National Primate Research Center, Division of Neuroscience, Beaverton, Oregon, United States
| | - Peng Li
- Zhejiang University, College of Optical Science and Engineering, State Key Lab of Modern Optical Instrumentation, Hangzhou, China
- Zhejiang University, International Research Center for Advanced Photonics, Hangzhou, Zhejiang, China
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32
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Yoon C, Qi Y, Mestre H, Canavesi C, Marola OJ, Cogliati A, Nedergaard M, Libby RT, Rolland JP. Gabor domain optical coherence microscopy combined with laser scanning confocal fluorescence microscopy. BIOMEDICAL OPTICS EXPRESS 2019; 10:6242-6257. [PMID: 31853397 PMCID: PMC6913392 DOI: 10.1364/boe.10.006242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 10/26/2019] [Accepted: 11/05/2019] [Indexed: 06/10/2023]
Abstract
We report on the development of fluorescence Gabor domain optical coherence microscopy (Fluo GD-OCM), a combination of GD-OCM with laser scanning confocal fluorescence microscopy (LSCFM) for synchronous micro-structural and fluorescence imaging. The dynamic focusing capability of GD-OCM provided the adaptive illumination environment for both modalities without any mechanical movement. Using Fluo GD-OCM, we imaged ex vivo DsRed-expressing cells in the brain of a transgenic mouse, as well as Cy3-labeled ganglion cells and Cy3-labeled astrocytes from a mouse retina. The self-registration of images taken by the two different imaging modalities showed the potential for a correlative study of subjects and double identification of the target.
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Affiliation(s)
- Changsik Yoon
- The Institute of Optics, University of Rochester, Wilmot Building, Rochester, New York 14627, USA
| | - Yue Qi
- Department of Biomedical Engineering, University of Rochester, Robert B. Goergen Hall, Rochester, New York 14627, USA
| | - Humberto Mestre
- Center for Translational Neuromedicine, Department of Neurosurgery, University of Rochester Medical Center, Rochester, New York 14642, USA
| | - Cristina Canavesi
- LighTopTech Corp., 150 Lucius Gordon Dr., Ste 201, West Henrietta, New York 14586, USA
| | - Olivia J. Marola
- Flaum Eye Institute, Department of Ophthalmology, University of Rochester Medical Center, Rochester, New York 14642, USA
| | - Andrea Cogliati
- LighTopTech Corp., 150 Lucius Gordon Dr., Ste 201, West Henrietta, New York 14586, USA
| | - Maiken Nedergaard
- Center for Translational Neuromedicine, Department of Neurosurgery, University of Rochester Medical Center, Rochester, New York 14642, USA
| | - Richard T. Libby
- Flaum Eye Institute, Department of Ophthalmology, University of Rochester Medical Center, Rochester, New York 14642, USA
| | - Jannick P. Rolland
- The Institute of Optics, University of Rochester, Wilmot Building, Rochester, New York 14627, USA
- Department of Biomedical Engineering, University of Rochester, Robert B. Goergen Hall, Rochester, New York 14627, USA
- LighTopTech Corp., 150 Lucius Gordon Dr., Ste 201, West Henrietta, New York 14586, USA
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33
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Yamanaka M, Hayakawa N, Nishizawa N. Signal-to-background ratio and lateral resolution in deep tissue imaging by optical coherence microscopy in the 1700 nm spectral band. Sci Rep 2019; 9:16041. [PMID: 31690729 PMCID: PMC6831679 DOI: 10.1038/s41598-019-52175-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Accepted: 10/09/2019] [Indexed: 11/08/2022] Open
Abstract
We quantitatively investigated the image quality in deep tissue imaging with optical coherence microscopy (OCM) in the 1700 nm spectral band, in terms of the signal-to-background ratio (SBR) and lateral resolution. In this work, to demonstrate the benefits of using the 1700 nm spectral band for OCM imaging of brain samples, we compared the imaging quality of OCM en-face images obtained at the same position by using a hybrid 1300 nm/1700 nm spectral domain (SD) OCM system with shared sample and reference arms. By observing a reflective resolution test target through a 1.5 mm-thick tissue phantom, which had a similar scattering coefficient to brain cortex tissue, we confirmed that 1700 nm OCM achieved an SBR about 6-times higher than 1300 nm OCM, although the lateral resolution of the both OCMs was similarly degraded with the increase of the imaging depth. Finally, we also demonstrated high-contrast deep tissue imaging of a mouse brain at a depth up to 1.8 mm by using high-resolution 1700 nm SD-OCM.
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Affiliation(s)
- Masahito Yamanaka
- Department of Electronics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8603, Japan.
| | - Naoki Hayakawa
- Department of Electronics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8603, Japan
| | - Norihiko Nishizawa
- Department of Electronics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8603, Japan
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34
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Wu M, Small DM, Nishimura N, Adie SG. Computed optical coherence microscopy of mouse brain ex vivo. JOURNAL OF BIOMEDICAL OPTICS 2019; 24:1-18. [PMID: 31773937 PMCID: PMC6880187 DOI: 10.1117/1.jbo.24.11.116002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 10/18/2019] [Indexed: 05/25/2023]
Abstract
The compromise between lateral resolution and usable imaging depth range is a bottleneck for optical coherence tomography (OCT). Existing solutions for optical coherence microscopy (OCM) suffer from either large data size and long acquisition time or a nonideal point spread function. We present volumetric OCM of mouse brain ex vivo with a large depth coverage by leveraging computational adaptive optics (CAO) to significantly reduce the number of OCM volumes that need to be acquired with a Gaussian beam focused at different depths. We demonstrate volumetric reconstruction of ex-vivo mouse brain with lateral resolution of 2.2 μm, axial resolution of 4.7 μm, and depth range of ∼1.2 mm optical path length, using only 11 OCT data volumes acquired on a spectral-domain OCM system. Compared to focus scanning with step size equal to the Rayleigh length of the beam, this is a factor of 4 fewer datasets required for volumetric imaging. Coregistered two-photon microscopy confirmed that CAO-OCM reconstructions can visualize various tissue microstructures in the brain. Our results also highlight the limitations of CAO in highly scattering media, particularly when attempting to reconstruct far from the focal plane or when imaging deep within the sample.
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Affiliation(s)
- Meiqi Wu
- Cornell University, Meinig School of Biomedical Engineering, Ithaca, New York, United States
| | - David M. Small
- Cornell University, Meinig School of Biomedical Engineering, Ithaca, New York, United States
| | - Nozomi Nishimura
- Cornell University, Meinig School of Biomedical Engineering, Ithaca, New York, United States
| | - Steven G. Adie
- Cornell University, Meinig School of Biomedical Engineering, Ithaca, New York, United States
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35
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Li Y, Tang P, Song S, Rakymzhan A, Wang RK. Electrically tunable lens integrated with optical coherence tomography angiography for cerebral blood flow imaging in deep cortical layers in mice. OPTICS LETTERS 2019; 44:5037-5040. [PMID: 31613257 PMCID: PMC7818849 DOI: 10.1364/ol.44.005037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 09/17/2019] [Indexed: 05/09/2023]
Abstract
We report the use of an electrically tunable lens (ETL) in a 1.3 μm spectral-domain optical coherence tomography (SD-OCT) system to overcome the depth of focus (DOF) limitation in conventional OCT systems for OCT angiography (OCTA) in a mouse cerebral cortex. The ETL provides fast and dynamic control of the axial focus of the probe beam along the entire range of the mouse cortex, upon which we performed cerebral blood flow imaging of all cortical layers by stitching the OCTA images automatically captured at six focal depths. Capillary vasculature and axial blood flow velocity were revealed in distinctive cortical layers and, for the first time, to the best of our knowledge, in white matter. The results have shown the system capability to conveniently investigate the hemodynamics in deep cortical layers in the mouse brain. More importantly, the compact integration of an ETL will benefit the future design of handheld or intra-cavity OCT probes for a wide range of applications in research and clinical fields.
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Affiliation(s)
- Yuandong Li
- Department of Bioengineering, School of Engineering, University of Washington, Seattle, Washington 98195, USA
| | - Peijun Tang
- Department of Bioengineering, School of Engineering, University of Washington, Seattle, Washington 98195, USA
| | - Shaozhen Song
- Department of Bioengineering, School of Engineering, University of Washington, Seattle, Washington 98195, USA
| | - Adiya Rakymzhan
- Department of Bioengineering, School of Engineering, University of Washington, Seattle, Washington 98195, USA
| | - Ruikang K. Wang
- Department of Bioengineering, School of Engineering, University of Washington, Seattle, Washington 98195, USA
- Department of Ophthalmology, School of Medicine, University of Washington, Seattle, Washington 98195, USA
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36
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Label-free neuroimaging in vivo using synchronous angular scanning microscopy with single-scattering accumulation algorithm. Nat Commun 2019; 10:3152. [PMID: 31316065 PMCID: PMC6637127 DOI: 10.1038/s41467-019-11040-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 06/14/2019] [Indexed: 12/21/2022] Open
Abstract
Label-free in vivo imaging is crucial for elucidating the underlying mechanisms of many important biological systems in their most native states. However, the applicability of existing modalities has been limited to either superficial layers or early developmental stages due to tissue turbidity. Here, we report a synchronous angular scanning microscope for the rapid interferometric recording of the time-gated reflection matrix, which is a unique matrix characterizing full light-specimen interaction. By applying single scattering accumulation algorithm to the recorded matrix, we removed both high-order sample-induced aberrations and multiple scattering noise with the effective aberration correction speed of 10,000 modes/s. We demonstrated in vivo imaging of whole neural network throughout the hindbrain of the larval zebrafish at a matured stage where physical dissection used to be required for conventional imaging. Our method will expand the scope of applications for optical imaging, where fully non-invasive interrogation of living specimens is critical. A major challenge of in vivo imaging is imaging deeper, including in turbid tissue. The authors report an adaptive optics based microscope that uses coherent single scattering signal to reduce sample-induced aberrations and enable fast deep-tissue imaging of in vivo larval zebrafish brain.
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37
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Speckle modulation enables high-resolution wide-field human brain tumor margin detection and in vivo murine neuroimaging. Sci Rep 2019; 9:10388. [PMID: 31316099 PMCID: PMC6637128 DOI: 10.1038/s41598-019-45902-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 06/05/2019] [Indexed: 11/18/2022] Open
Abstract
Current in vivo neuroimaging techniques provide limited field of view or spatial resolution and often require exogenous contrast. These limitations prohibit detailed structural imaging across wide fields of view and hinder intraoperative tumor margin detection. Here we present a novel neuroimaging technique, speckle-modulating optical coherence tomography (SM-OCT), which allows us to image the brains of live mice and ex vivo human samples with unprecedented resolution and wide field of view using only endogenous contrast. The increased visibility provided by speckle elimination reveals white matter fascicles and cortical layer architecture in brains of live mice. To our knowledge, the data reported herein represents the highest resolution imaging of murine white matter structure achieved in vivo across a wide field of view of several millimeters. When applied to an orthotopic murine glioblastoma xenograft model, SM-OCT readily identifies brain tumor margins with resolution of approximately 10 μm. SM-OCT of ex vivo human temporal lobe tissue reveals fine structures including cortical layers and myelinated axons. Finally, when applied to an ex vivo sample of a low-grade glioma resection margin, SM-OCT is able to resolve the brain tumor margin. Based on these findings, SM-OCT represents a novel approach for intraoperative tumor margin detection and in vivo neuroimaging.
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38
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Yang S, Liu K, Ding H, Gao H, Zheng X, Ding Z, Xu K, Li P. Longitudinal in vivo intrinsic optical imaging of cortical blood perfusion and tissue damage in focal photothrombosis stroke model. J Cereb Blood Flow Metab 2019; 39. [PMID: 29521548 PMCID: PMC6668510 DOI: 10.1177/0271678x18762636] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
A thorough understanding of the spatiotemporal dynamics of blood supply and tissue viability is of great importance in stroke researches. In the current study, vascular and cellular responses to focal ischemia were monitored with optical coherence tomography on chronic rat photothrombotic stroke model. The 3D mapping of blood perfusion and cellular scattering were achieved by analyzing the temporal dynamics and depth attenuation of intrinsic backscattered light respectively. Optical coherence tomography revealed that vessels of different types presented various spatial and temporal dynamics during the photothrombotic occlusion and the later recovery period. The large distal middle cerebral arteries presented a spontaneous recanalization and the small pial microvessels presented a reperfusion along with newly appeared vessels from the peripheral into the core area. The cortical capillary perfusion presented a weak recovery. Compared to the male group, the female rats showed a faster vascular recovery after photothrombotic. Moreover, the dynamic changes of the cellular scattering signal showed a high spatial and temporal correlation with the cortical capillary perfusion. Combined with well-designed photothrombotic stroke model and chronic optical window, optical coherence tomography imaging offers a unique approach to improve the understanding of stroke procedure and evaluate the treatment outcomes.
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Affiliation(s)
- Shanshan Yang
- 1 State Key Lab of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, Zhejiang, China
| | - Kezhou Liu
- 2 Department of Biomedical Engineering, Key Laboratory of Biomedical Engineering of Education Ministry, Zhejiang University, Hangzhou, China.,3 College of Life Information Science and Instruments Engineering, Hangzhou Dianzi University, Hangzhou, China
| | - Huijie Ding
- 3 College of Life Information Science and Instruments Engineering, Hangzhou Dianzi University, Hangzhou, China
| | - Huan Gao
- 4 Qiushi Academy for Advanced Studies (QAAS), Zhejiang University, Hangzhou, China
| | - Xiaoxiang Zheng
- 2 Department of Biomedical Engineering, Key Laboratory of Biomedical Engineering of Education Ministry, Zhejiang University, Hangzhou, China.,4 Qiushi Academy for Advanced Studies (QAAS), Zhejiang University, Hangzhou, China.,5 Zhejiang Provincial Key Laboratory of Cardio-Cerebral Vascular Detection Technology and Medicinal Effectiveness Appraisal, Zhejiang University, Hangzhou, China
| | - Zhihua Ding
- 1 State Key Lab of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, Zhejiang, China
| | - Kedi Xu
- 2 Department of Biomedical Engineering, Key Laboratory of Biomedical Engineering of Education Ministry, Zhejiang University, Hangzhou, China.,4 Qiushi Academy for Advanced Studies (QAAS), Zhejiang University, Hangzhou, China.,5 Zhejiang Provincial Key Laboratory of Cardio-Cerebral Vascular Detection Technology and Medicinal Effectiveness Appraisal, Zhejiang University, Hangzhou, China
| | - Peng Li
- 1 State Key Lab of Modern Optical Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou, Zhejiang, China
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39
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Pham TT, Chen L, Heidari AE, Chen JJ, Zhukhovitskaya A, Li Y, Patel U, Chen Z, Wong BJ. Computational analysis of six optical coherence tomography systems for vocal fold imaging: A comparison study. Lasers Surg Med 2019; 51:412-422. [PMID: 30681167 PMCID: PMC6658351 DOI: 10.1002/lsm.23060] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/30/2018] [Indexed: 11/09/2022]
Abstract
OBJECTIVES There have been many advancements in laryngeal imaging using optical coherence tomography (OCT), with varying system design and probes for use in research, office, and operating room settings. We evaluated the performance of six distinct OCT systems in imaging porcine vocal folds (cords) using computational image processing and segmentation. METHODS Porcine vocal folds were scanned using six OCT systems. Imaging system and probe performance were quantitatively assessed for signal penetration, layer differentiation, and epithelium (EP) measurement. Fitted exponential decay curves with corresponding α constant and intensity thresholding segmentation were utilized to quantify the aforementioned parameters. RESULTS The smallest average α constant and deepest signal penetration was of the SS-OCT 1700 nm 90 kHz microscope system (α = -1.74), followed by the SS-OCT 1310 nm 200 kHz VCSEL microscope system (α = -1.99), and SS-OCT 1310 nm 50 kHz rigid forward viewing endoscope system (α = -2.23). The EP was not readily visualized for three out of six systems, but was detected using automated segmentation. Average EP thickness (mean ± SD) was calculated as 55.79 ± 31.86 μm which agrees favorably with previous literature. CONCLUSION Comparisons of OCT systems are challenging, as they encompass different probe design, optical path, and lasers, depending on application. Practical evaluation of different systems using computer based quantitative image processing and segmentation revealed basic, constructive information, such as EP measurements. To further validate the comparisons of system performance with clinical usability, in vivo human laryngeal imaging will be conducted. Further development of automated image processing and segmentation can be useful in rapid analysis of information. Lasers Surg. Med. 51:412-422, 2019. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Tiffany T. Pham
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- School of Medicine, University of California—Irvine, Irvine, California 92617
| | - Lily Chen
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
| | - Andrew E. Heidari
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- Department of Biomedical Engineering, University of California—Irvine, Irvine, California 92697
| | - Jason J. Chen
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- Department of Biomedical Engineering, University of California—Irvine, Irvine, California 92697
| | - Alisa Zhukhovitskaya
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- Department of Otolaryngology—Head and Neck Surgery, University of California—Irvine, Orange, California 92868
| | - Yan Li
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- Department of Biomedical Engineering, University of California—Irvine, Irvine, California 92697
| | - Urja Patel
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
| | - Zhongping Chen
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- Department of Biomedical Engineering, University of California—Irvine, Irvine, California 92697
| | - Brian J.F. Wong
- Beckman Laser Institute & Medical Clinic, University of California—Irvine, Irvine, California 92612
- School of Medicine, University of California—Irvine, Irvine, California 92617
- Department of Biomedical Engineering, University of California—Irvine, Irvine, California 92697
- Department of Otolaryngology—Head and Neck Surgery, University of California—Irvine, Orange, California 92868
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40
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Yamanaka M, Hayakawa N, Nishizawa N. High-spatial-resolution deep tissue imaging with spectral-domain optical coherence microscopy in the 1700-nm spectral band. JOURNAL OF BIOMEDICAL OPTICS 2019; 24:1-4. [PMID: 31364330 PMCID: PMC6995893 DOI: 10.1117/1.jbo.24.7.070502] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2019] [Accepted: 07/10/2019] [Indexed: 05/25/2023]
Abstract
We present three-dimensional (3-D) high-resolution spectral-domain optical coherence microscopy (SD-OCM) by using a supercontinuum (SC) fiber laser source with 300-nm spectral bandwidth (full-width at half-maximum) in the 1700-nm spectral band. By using low-coherence interferometry with SC light and a confocal detection scheme, we realized lateral and axial resolutions of 3.4 and 3.8 μm in tissue (n = 1.38), respectively. This is, to the best of our knowledge, the highest 3-D spatial resolution reported among those of Fourier-domain optical coherence imaging techniques in the 1700-nm spectral band. In our SD-OCM, to enhance the imaging depth, a full-range method was implemented, which suppressed the formation of a coherent ghost image and allowed us to set the zero-delay position inside the samples. We demonstrated the 3-D high-resolution imaging capability of 1700-nm SD-OCM through the measurement of an interference signal from a mirror surface and imaging of a single 200-nm polystyrene bead and a pig thyroid gland. Deep tissue imaging at a depth of up to 1.8 mm was also demonstrated. This is the first demonstration of 3-D high-resolution SD-OCM in the 1700-nm spectral band.
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Affiliation(s)
| | - Naoki Hayakawa
- Nagoya University, Department of Electronics, Nagoya, Aichi, Japan
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41
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Lichtenegger A, Gesperger J, Kiesel B, Muck M, Eugui P, Harper DJ, Salas M, Augustin M, Merkle CW, Hitzenberger CK, Widhalm G, Woehrer A, Baumann B. Revealing brain pathologies with multimodal visible light optical coherence microscopy and fluorescence imaging. JOURNAL OF BIOMEDICAL OPTICS 2019; 24:1-11. [PMID: 31240898 PMCID: PMC6977170 DOI: 10.1117/1.jbo.24.6.066010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Accepted: 06/07/2019] [Indexed: 05/28/2023]
Abstract
We present a multimodal visible light optical coherence microscopy (OCM) and fluorescence imaging (FI) setup. Specification and phantom measurements were performed to characterize the system. Two applications in neuroimaging were investigated. First, curcumin-stained brain slices of a mouse model of Alzheimer's disease were examined. Amyloid-beta plaques were identified based on the fluorescence of curcumin, and coregistered morphological images of the brain tissue were provided by the OCM channel. Second, human brain tumor biopsies retrieved intraoperatively were imaged prior to conventional neuropathologic work-up. OCM revealed the three-dimensional structure of the brain parenchyma, and FI added the tumor tissue-specific contrast. Attenuation coefficients computed from the OCM data and the florescence intensity values were analyzed and showed a statistically significant difference for 5-aminolevulinic acid (5-ALA)-positive and -negative brain tissues. OCM findings correlated well with malignant hot spots within brain tumor biopsies upon histopathology. The combination of OCM and FI seems to be a promising optical imaging modality providing complementary contrast for applications in the field of neuroimaging.
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Affiliation(s)
- Antonia Lichtenegger
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Johanna Gesperger
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- General Hospital and Medical University of Vienna, Institute of Neurology, Vienna, Austria
| | - Barbara Kiesel
- General Hospital and Medical University of Vienna, Univ. Klinik Neurochirurgie, Vienna, Austria
| | - Martina Muck
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
- General Hospital and Medical University of Vienna, Institute of Neurology, Vienna, Austria
| | - Pablo Eugui
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Danielle J. Harper
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Matthias Salas
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Marco Augustin
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Conrad W. Merkle
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Christoph K. Hitzenberger
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
| | - Georg Widhalm
- General Hospital and Medical University of Vienna, Univ. Klinik Neurochirurgie, Vienna, Austria
| | - Adelheid Woehrer
- General Hospital and Medical University of Vienna, Institute of Neurology, Vienna, Austria
| | - Bernhard Baumann
- Medical University of Vienna, Center for Medical Physics and Biomedical Engineering, Vienna, Austria
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42
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Ahn H, Bae J, Park J, Jin J. A Hybrid Non-destructive Measuring Method of Three-dimensional Profile of Through Silicon Vias for Realization of Smart Devices. Sci Rep 2018; 8:15342. [PMID: 30367137 PMCID: PMC6203746 DOI: 10.1038/s41598-018-33728-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 10/05/2018] [Indexed: 11/09/2022] Open
Abstract
Smart devices have been fabricated based on design concept of multiple layer structures which require through silicon vias to transfer electric signals between stacked layers. Because even a single defect leads to fail of the packaged devices, the dimensions of the through silicon vias are needed to be measured through whole sampling inspection process. For that, a novel hybrid optical probe working based on optical interferometry, confocal microscopy and optical microscopy was proposed and realized for enhancing inspection efficiency in this report. The optical microscope was utilized for coarsely monitoring the specimen in a large field of view, and the other methods of interferometry and confocal microscopy were used to measure dimensions of small features with high speed by eliminating time-consuming process of the vertical scanning. Owing to the importance of the reliability, the uncertainty evaluation of the proposed method was fulfilled, which offers a practical example for estimating the performance of inspection machines operating with numerous principles at semiconductor manufacturing sites. According to the measurement results, the mean values of the diameter and depth were 40.420 µm and 5.954 µm with the expanded uncertainty of 0.050 µm (k = 2) and 0.208 µm (k = 2), respectively.
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Affiliation(s)
- Heulbi Ahn
- Department of Science of Measurement, Korea University of Science and Technology (UST), 217, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea
| | - Jaeseok Bae
- Department of Science of Measurement, Korea University of Science and Technology (UST), 217, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea
| | - Jungjae Park
- Department of Science of Measurement, Korea University of Science and Technology (UST), 217, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea
- Division of Physical Metrology, Korea Research Institute of Standards and Science (KRISS), 267, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea
| | - Jonghan Jin
- Department of Science of Measurement, Korea University of Science and Technology (UST), 217, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea.
- Division of Physical Metrology, Korea Research Institute of Standards and Science (KRISS), 267, Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea.
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43
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Recovering distance information in spectral domain interferometry. Sci Rep 2018; 8:15445. [PMID: 30337645 PMCID: PMC6194011 DOI: 10.1038/s41598-018-33821-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 10/01/2018] [Indexed: 11/09/2022] Open
Abstract
This work evaluates the performance of the Complex Master Slave (CMS) method, that processes the spectra at the interferometer output of a spectral domain interferometry device without involving Fourier transforms (FT) after data acquisition. Reliability and performance of CMS are compared side by side with the conventional method based on FT, phase calibration with dispersion compensation (PCDC). We demonstrate that both methods provide similar results in terms of resolution and sensitivity drop-off. The mathematical operations required to produce CMS results are highly parallelizable, allowing real-time, simultaneous delivery of data from several points of different optical path differences in the interferometer, not possible via PCDC.
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44
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Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct 2018; 224:351-362. [PMID: 30328512 DOI: 10.1007/s00429-018-1777-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 10/03/2018] [Indexed: 12/11/2022]
Abstract
Optical coherence tomography is an optical technique that uses backscattered light to highlight intrinsic structure, and when applied to brain tissue, it can resolve cortical layers and fiber bundles. Optical coherence microscopy (OCM) is higher resolution (i.e., 1.25 µm) and is capable of detecting neurons. In a previous report, we compared the correspondence of OCM acquired imaging of neurons with traditional Nissl stained histology in entorhinal cortex layer II. In the current method-oriented study, we aimed to determine the colocalization success rate between OCM and Nissl in other brain cortical areas with different laminar arrangements and cell packing density. We focused on two additional cortical areas: medial prefrontal, pre-genual Brodmann area (BA) 32 and lateral temporal BA 21. We present the data as colocalization matrices and as quantitative percentages. The overall average colocalization in OCM compared to Nissl was 67% for BA 32 (47% for Nissl colocalization) and 60% for BA 21 (52% for Nissl colocalization), but with a large variability across cases and layers. One source of variability and confounds could be ascribed to an obscuring effect from large and dense intracortical fiber bundles. Other technical challenges, including obstacles inherent to human brain tissue, are discussed. Despite limitations, OCM is a promising semi-high throughput tool for demonstrating detail at the neuronal level, and, with further development, has distinct potential for the automatic acquisition of large databases as are required for the human brain.
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Lefebvre J, Delafontaine-Martel P, Pouliot P, Girouard H, Descoteaux M, Lesage F. Fully automated dual-resolution serial optical coherence tomography aimed at diffusion MRI validation in whole mouse brains. NEUROPHOTONICS 2018; 5:045004. [PMID: 30681668 PMCID: PMC6215086 DOI: 10.1117/1.nph.5.4.045004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Accepted: 10/12/2018] [Indexed: 06/09/2023]
Abstract
An automated dual-resolution serial optical coherence tomography (2R-SOCT) scanner is developed. The serial histology system combines a low-resolution ( 25 μ m / voxel ) 3 × OCT with a high-resolution ( 1.5 μ m / voxel ) 40 × OCT to acquire whole mouse brains at low resolution and to target specific regions of interest (ROIs) at high resolution. The 40 × ROIs positions are selected either manually by the microscope operator or using an automated ROI positioning selection algorithm. Additionally, a multimodal and multiresolution registration pipeline is developed in order to align the 2R-SOCT data onto diffusion MRI (dMRI) data acquired in the same ex vivo mouse brains prior to automated histology. Using this imaging system, 3 whole mouse brains are imaged, and 250 high-resolution 40 × three-dimensional ROIs are acquired. The capability of this system to perform multimodal imaging studies is demonstrated by labeling the ROIs using a mouse brain atlas and by categorizing the ROIs based on their associated dMRI measures. This reveals a good correspondence of the tissue microstructure imaged by the high-resolution OCT with various dMRI measures such as fractional anisotropy, number of fiber orientations, apparent fiber density, orientation dispersion, and intracellular volume fraction.
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Affiliation(s)
- Joël Lefebvre
- École Polytechnique de Montréal, Laboratoire d’imagerie optique et moléculaire, Montreal, Canada
| | | | - Philippe Pouliot
- École Polytechnique de Montréal, Laboratoire d’imagerie optique et moléculaire, Montreal, Canada
- Université de Montréal, Research Centre, Montréal Heart Institute, Montreal, Canada
| | - Hélène Girouard
- Université de Montréal, Institut universitaire de gériatrie de Montréal, Montreal, Canada
| | - Maxime Descoteaux
- Université de Sherbrooke, Sherbrooke Connectivity Imaging Laboratory, Sherbrooke, Canada
| | - Frédéric Lesage
- École Polytechnique de Montréal, Laboratoire d’imagerie optique et moléculaire, Montreal, Canada
- Université de Montréal, Research Centre, Montréal Heart Institute, Montreal, Canada
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Liu S, Lamont MRE, Mulligan JA, Adie SG. Aberration-diverse optical coherence tomography for suppression of multiple scattering and speckle. BIOMEDICAL OPTICS EXPRESS 2018; 9:4919-4935. [PMID: 30319912 PMCID: PMC6179412 DOI: 10.1364/boe.9.004919] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 09/06/2018] [Accepted: 09/07/2018] [Indexed: 05/05/2023]
Abstract
Multiple scattering is a major barrier that limits the optical imaging depth in scattering media. In order to alleviate this effect, we demonstrate aberration-diverse optical coherence tomography (AD-OCT), which exploits the phase correlation between the deterministic signals from single-scattered photons to suppress the random background caused by multiple scattering and speckle. AD-OCT illuminates the sample volume with diverse aberrated point spread functions, and computationally removes these intentionally applied aberrations. After accumulating 12 astigmatism-diverse OCT volumes, we show a 10 dB enhancement in signal-to-background ratio via a coherent average of reconstructed signals from a USAF target located 7.2 scattering mean free paths below a thick scattering layer, and a 3× speckle contrast reduction from an incoherent average of reconstructed signals inside the scattering layer. This AD-OCT method, when implemented using astigmatic illumination, is a promising approach for ultra-deep volumetric optical coherence microscopy.
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Affiliation(s)
- Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Michael R. E. Lamont
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Jeffrey A. Mulligan
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Steven G. Adie
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
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Dubois A, Levecq O, Azimani H, Siret D, Barut A, Suppa M, Del Marmol V, Malvehy J, Cinotti E, Rubegni P, Perrot JL. Line-field confocal optical coherence tomography for high-resolution noninvasive imaging of skin tumors. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-9. [PMID: 30353716 DOI: 10.1117/1.jbo.23.10.106007] [Citation(s) in RCA: 120] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 10/01/2018] [Indexed: 05/06/2023]
Abstract
An optical technique called line-field confocal optical coherence tomography (LC-OCT) is introduced for high-resolution, noninvasive imaging of human skin in vivo. LC-OCT combines the principles of time-domain optical coherence tomography and confocal microscopy with line illumination and detection using a broadband laser and a line-scan camera. LC-OCT measures the echo-time delay and amplitude of light backscattered from cutaneous microstructures through low-coherence interferometry associated with confocal spatial filtering. Multiple A-scans are acquired simultaneously while dynamically adjusting the focus. The resulting cross-sectional B-scan image is produced in real time at 10 frame / s. With an isotropic spatial resolution of ∼1 μm, the LC-OCT images reveal a comprehensive structural mapping of skin at the cellular level down to a depth of ∼500 μm. LC-OCT has been applied to the imaging of various skin lesions, in vivo, including carcinomas and melanomas. LC-OCT images are found to strongly correlate with conventional histopathological images. The use of LC-OCT as an adjunct tool in medical practice could significantly improve clinical diagnostic accuracy while reducing the number of biopsies of benign lesions.
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Affiliation(s)
- Arnaud Dubois
- Université Paris-Saclay, Institut d'Optique Graduate School, Laboratoire Charles Fabry, Palaiseau, France
| | | | | | | | | | - Mariano Suppa
- Hôpital Erasme, Université Libre de Bruxelles, Department of Dermatology, Brussels, Belgium
| | - Véronique Del Marmol
- Hôpital Erasme, Université Libre de Bruxelles, Department of Dermatology, Brussels, Belgium
| | - Josep Malvehy
- University Hospital Clinic of Barcelona, Barcelona, Spain
| | - Elisa Cinotti
- University of Siena, Department of Medical, Surgical and Neurological Sciences, Dermatology Unit, Si, Italy
| | - Pietro Rubegni
- University of Siena, Department of Medical, Surgical and Neurological Sciences, Dermatology Unit, Si, Italy
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Mondello SE, Sunshine MD, Fischedick AE, Dreyer SJ, Horwitz GD, Anikeeva P, Horner PJ, Moritz CT. Optogenetic surface stimulation of the rat cervical spinal cord. J Neurophysiol 2018; 120:795-811. [DOI: 10.1152/jn.00461.2017] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Electrical intraspinal microstimulation (ISMS) at various sites along the cervical spinal cord permits forelimb muscle activation, elicits complex limb movements and may enhance functional recovery after spinal cord injury. Here, we explore optogenetic spinal stimulation (OSS) as a less invasive and cell type-specific alternative to ISMS. To map forelimb muscle activation by OSS in rats, adeno-associated viruses (AAV) carrying the blue-light sensitive ion channels channelrhodopsin-2 (ChR2) and Chronos were injected into the cervical spinal cord at different depths and volumes. Following an AAV incubation period of several weeks, OSS-induced forelimb muscle activation and movements were assessed at 16 sites along the dorsal surface of the cervical spinal cord. Three distinct movement types were observed. We find that AAV injection volume and depth can be titrated to achieve OSS-based activation of several movements. Optical stimulation of the spinal cord is thus a promising method for dissecting the function of spinal circuitry and targeting therapies following injury. NEW & NOTEWORTHY Optogenetics in the spinal cord can be used both for therapeutic treatments and to uncover basic mechanisms of spinal cord physiology. For the first time, we describe the methodology and outcomes of optogenetic surface stimulation of the rat spinal cord. Specifically, we describe the evoked responses of forelimbs and address the effects of different adeno-associated virus injection paradigms. Additionally, we are the first to report on the limitations of light penetration through the rat spinal cord.
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Affiliation(s)
- S. E. Mondello
- Department of Rehabilitation Medicine, University of Washington, Seattle, Washington
- Center for Sensorimotor Neural Engineering, Seattle, Washington
| | - M. D. Sunshine
- Department of Rehabilitation Medicine, University of Washington, Seattle, Washington
- Center for Sensorimotor Neural Engineering, Seattle, Washington
| | - A. E. Fischedick
- Department of Rehabilitation Medicine, University of Washington, Seattle, Washington
| | - S. J. Dreyer
- Center for Sensorimotor Neural Engineering, Seattle, Washington
- Department of Bioengineering, University of Illinois, Chicago, Illinois
| | - G. D. Horwitz
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington
- Washington National Primate Research Center, Seattle, Washington
| | - P. Anikeeva
- Center for Sensorimotor Neural Engineering, Seattle, Washington
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts
- Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts
| | - P. J. Horner
- Center for Neuroregeneration, Department of Neurological Surgery, Houston Methodist Research Institute, Houston, Texas
| | - C. T. Moritz
- Department of Rehabilitation Medicine, University of Washington, Seattle, Washington
- University of Washington Institute for Neuroengineering, University of Washington, Seattle, Washington
- Department of Physiology and Biophysics, University of Washington, Seattle, Washington
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington
- Center for Sensorimotor Neural Engineering, Seattle, Washington
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Wang M, Wu C, Sinefeld D, Li B, Xia F, Xu C. Comparing the effective attenuation lengths for long wavelength in vivo imaging of the mouse brain. BIOMEDICAL OPTICS EXPRESS 2018; 9:3534-3543. [PMID: 30338138 PMCID: PMC6191617 DOI: 10.1364/boe.9.003534] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Revised: 06/13/2018] [Accepted: 06/20/2018] [Indexed: 05/05/2023]
Abstract
Light attenuation in thick biological tissues, caused by a combination of absorption and scattering, limits the penetration depth in multiphoton microscopy (MPM). Both tissue scattering and absorption are dependent on wavelengths, which makes it essential to choose the excitation wavelength with minimum attenuation for deep imaging. Although theoretical models have been established to predict the wavelength dependence of light attenuation in brain tissues, the accuracy of these models in experimental settings needs to be verified. Furthermore, the water absorption contribution to the tissue attenuation, especially at 1450 nm where strong water absorption is predicted to be the dominant contributor in light attenuation, has not been confirmed. Here we performed a systematic study of in vivo three-photon imaging at different excitation wavelengths, 1300 nm, 1450 nm, 1500 nm, 1550 nm, and 1700 nm, and quantified the tissue attenuation by calculating the effective attenuation length at each wavelength. The experimental data show that the effective attenuation length at 1450 nm is significantly shorter than that at 1300 nm or 1700 nm. Our results provide unequivocal validation of the theoretical estimations based on water absorption and tissue scattering in predicting the effective attenuation lengths for long wavelength in vivo imaging.
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Liu S, Mulligan JA, Adie SG. Volumetric optical coherence microscopy with a high space-bandwidth- time product enabled by hybrid adaptive optics. BIOMEDICAL OPTICS EXPRESS 2018; 9:3137-3152. [PMID: 29984088 PMCID: PMC6033577 DOI: 10.1364/boe.9.003137] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 05/31/2018] [Accepted: 05/31/2018] [Indexed: 05/06/2023]
Abstract
Optical coherence microscopy (OCM) is a promising modality for high resolution imaging, but has limited ability to capture large-scale volumetric information about dynamic biological processes with cellular resolution. To enhance the throughput of OCM, we implemented a hybrid adaptive optics (hyAO) approach that combines computational adaptive optics with an intentionally aberrated imaging beam generated via hardware adaptive optics. Using hyAO, we demonstrate the depth-equalized illumination and collection ability of an astigmatic beam compared to a Gaussian beam for cellular-resolution imaging. With this advantage, we achieved volumetric OCM with a higher space-bandwidth-time product compared to Gaussian-beam acquisition that employed focus-scanning across depth. HyAO was also used to perform volumetric time-lapse OCM imaging of cellular dynamics over a 1mm × 1mm × 1mm field-of-view with 2 μm isotropic spatial resolution and 3-minute temporal resolution. As hyAO is compatible with both spectral-domain and swept-source beam-scanning OCM systems, significant further improvements in absolute volumetric throughput are possible by use of ultrahigh-speed swept sources.
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Affiliation(s)
- Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Jeffrey A. Mulligan
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Steven G. Adie
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
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