99851
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Li R, Huang Y, Shi X, Wang L, Li Z, Zhu D, Liang X, Cao J, Xiong Y. Dopant Site Engineering on 2D Co 3O 4 Enables Enhanced Toluene Oxidation in a Wide Temperature Range. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:13236-13246. [PMID: 37615390 DOI: 10.1021/acs.est.3c03617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Abstract
Development of cost-effective oxide catalysts holds the key to the removal of toluene, one of the most important volatile organic compounds. However, the catalysts follow varied working mechanisms at different reaction temperatures, posing a challenge to achieving efficient toluene removal over a wide temperature range. Here we report an agitation-assisted molten salt method, which achieves the rational doping on a two-dimensional Co3O4 catalyst and forms two different structures of active sites to enhance catalytic oxidation of toluene in specific temperature intervals, enabling a facile tandem design for working in a wide temperature range. Specifically, Co3O4 is doped with Cu at the octahedral site (Cu-Co3O4) and Zn at the tetrahedral site (Zn-Co3O4) to form CuOh-O-CoTe and ZnTe-O-CoOh structures on the surface, respectively. Mechanistic studies reveal the different working mechanisms of these two active sites toward remarkable performance enhancement at specific temperature intervals, and the improved performance derived from accelerated consumption of intermediates adsorbed on the catalyst surface. Taken together, Cu-Co3O4 and Zn-Co3O4 achieve excellent toluene purification performance over a wide temperature range. This work provides insights into the mechanism-oriented design of active sites at the atomic level.
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Affiliation(s)
- Rong Li
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Yu Huang
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
| | - Xianjin Shi
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Liqin Wang
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
| | - Zhiyu Li
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Dandan Zhu
- Key Laboratory of Aerosol Chemistry & Physics, State Key Laboratory of Loess and Quaternary Geology (SKLLQG), Institute of Earth Environment, Chinese Academy of Sciences (CAS), Xi'an 710061, P. R. China
- CAS Center for Excellence in Quaternary Science and Global Change, Xi'an 710061, P. R. China
| | - Xiaoliang Liang
- CAS Key Laboratory of Mineralogy and Metallogeny/Guangdong Provincial Key Laboratory of Mineral Physics and Materials, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, P. R. China
| | - Junji Cao
- Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100190, P. R. China
| | - Yujie Xiong
- Hefei National Research Center for Physical Sciences at the Microscale, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China
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99852
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Huang B, Li K, Ma QY, Xiang TX, Liang RX, Gong YN, Wang BJ, Zhang JH, Xie SM, Yuan LM. Homochiral Metallacycle Used as a Stationary Phase for Capillary Gas Chromatographic Separation of Chiral and Achiral Compounds. Anal Chem 2023; 95:13289-13296. [PMID: 37615071 DOI: 10.1021/acs.analchem.3c02438] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Abstract
Metallacycles are a novel class of supramolecular materials with circular structures, internal cavities, and abundant host-guest chemical properties that have exhibited good application prospects in many fields. However, to the best of our knowledge, no research on the use of metallacycles as stationary phases for gas chromatographic (GC) separations has been published yet. In this work, we report for the first time the use of a homochiral metallacycle, [ZnCl2L]2, as a stationary phase for GC separations. [ZnCl2L]2 was synthesized by reaction of (S)-(1-isonicotinoylpyrrolidin-2-yl)methyl-isonicotinate (L) with ZnCl2 via coordination-driven self-assembly. The [ZnCl2L]2-coated column displayed an excellent separation performance not only of organic isomers but also of racemic compounds. Sixteen racemates (including alcohols, esters, amino acid derivatives, ethers, organic acids, and epoxides) and 21 isomeric compounds (including positional, structural, and cis/trans-isomers) were well separated on the [ZnCl2L]2-coated column. Impressively, some racemates were resolved with high resolution values (Rs), including 1,2-butanediol diacetate (Rs = 25.86), ethyl 3-hydroxybutyrate (Rs = 20.97), 1,3-butanediol diacetate (Rs = 18.09), and threonine derivative (Rs = 18.61). Compared with the commercial β-DEX 120 column for separation of the tested racemates, the [ZnCl2L]2-coated column exhibited good enantioseparation complementarity, enabling separation of some racemates that could not be separated, or were not well resolved, by the β-DEX 120 column. In addition, many organic mixtures, such as n-alkanes, alkylbenzenes, n-alcohols, and a Grob test mixture, were also well separated on the [ZnCl2L]2-coated column. The column also has good reproducibility and thermal stability on separation. This work not only reveals the great potential of metallacycles for GC separations but also opens up a new application of metallacycles in separation science.
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Affiliation(s)
- Bin Huang
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Kuan Li
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Qi-Yu Ma
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Tuan-Xiu Xiang
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Rui-Xue Liang
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Ya-Nan Gong
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Bang-Jin Wang
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Jun-Hui Zhang
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Sheng-Ming Xie
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
| | - Li-Ming Yuan
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, People's Republic of China
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99853
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Bo Y, Zhou J, Cai K, Wang Y, Feng Y, Li W, Jiang Y, Kuo SH, Roy J, Anorma C, Gardner SH, Luu LM, Lau GW, Bao Y, Chan J, Wang H, Cheng J. Leveraging intracellular ALDH1A1 activity for selective cancer stem-like cell labeling and targeted treatment via in vivo click reaction. Proc Natl Acad Sci U S A 2023; 120:e2302342120. [PMID: 37639589 PMCID: PMC10483628 DOI: 10.1073/pnas.2302342120] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/09/2023] [Indexed: 08/31/2023] Open
Abstract
Inhibition of overexpressed enzymes is among the most promising approaches for targeted cancer treatment. However, many cancer-expressed enzymes are "nonlethal," in that the inhibition of the enzymes' activity is insufficient to kill cancer cells. Conventional antibody-based therapeutics can mediate efficient treatment by targeting extracellular nonlethal targets but can hardly target intracellular enzymes. Herein, we report a cancer targeting and treatment strategy to utilize intracellular nonlethal enzymes through a combination of selective cancer stem-like cell (CSC) labeling and Click chemistry-mediated drug delivery. A de novo designed compound, AAMCHO [N-(3,4,6-triacetyl- N-azidoacetylmannosamine)-cis-2-ethyl-3-formylacrylamideglycoside], selectively labeled cancer CSCs in vitro and in vivo through enzymatic oxidation by intracellular aldehyde dehydrogenase 1A1. Notably, azide labeling is more efficient in identifying tumorigenic cell populations than endogenous markers such as CD44. A dibenzocyclooctyne (DBCO)-toxin conjugate, DBCO-MMAE (Monomethylauristatin E), could next target the labeled CSCs in vivo via bioorthogonal Click reaction to achieve excellent anticancer efficacy against a series of tumor models, including orthotopic xenograft, drug-resistant tumor, and lung metastasis with low toxicity. A 5/7 complete remission was observed after single-cycle treatment of an advanced triple-negative breast cancer xenograft (~500 mm3).
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Affiliation(s)
- Yang Bo
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Jingyi Zhou
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Kaimin Cai
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Iria Pharma,Champaign, IL61820
| | - Ying Wang
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Yujun Feng
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Wenming Li
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Yunjiang Jiang
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Shanny Hsuan Kuo
- Department of Pathobiology at College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Jarron Roy
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Chelsea Anorma
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Sarah H. Gardner
- Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | | | - Gee W. Lau
- Department of Pathobiology at College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Yan Bao
- Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Medical Research Center, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, Guangdong510120, China
| | - Jefferson Chan
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Hua Wang
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Cancer Center at Illinois, University of Illinois at Urbana-Champaign, Urbana, IL61801
- School of Engineering, Westlake University, Hangzhou, Zhejiang Province310024, China
| | - Jianjun Cheng
- Department of Materials Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Iria Pharma,Champaign, IL61820
- Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
- Cancer Center at Illinois, University of Illinois at Urbana-Champaign, Urbana, IL61801
- School of Engineering, Westlake University, Hangzhou, Zhejiang Province310024, China
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99854
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Weng J, Yang J, Wang W, Wen J, Fang M, Zheng G, Xie J, Zheng X, Feng L, Yan Q. Application of microneedles combined with dendritic cell-targeted nanovaccine delivery system in percutaneous immunotherapy for triple-negative breast cancer. NANOTECHNOLOGY 2023; 34:475101. [PMID: 37478829 DOI: 10.1088/1361-6528/ace97b] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 07/21/2023] [Indexed: 07/23/2023]
Abstract
This work aims at developing a strategy to activate the antigen-presenting cells to enhance the effect of immunotherapy in triple-negative breast cancer (TNBC) through the dissolving microneedle patch (DMNP). In present study, mannosylated chitosan (MCS) nanoparticles (NPs) were designed to target dendritic cells (DCs), and the immunotherapy effect was enhanced by the adjuvant Bacillus Calmette-Guerin polysaccharide (BCG-PSN), achieving the purpose of transdermal immunotherapy for TNBC. Vaccination studies with mice demonstrated that MCS NPs effectively induce DCs maturation in the tumor-draining lymph nodes to stimulate strong immune responses in TNBC. Overall, chitosan-based DMNPs with complex adjuvant constituted a new potent transdermal vaccine delivery platform capable of exploiting more DCs in the skin for effective immunization.
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Affiliation(s)
- Jiaqi Weng
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Jing Yang
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Weiwei Wang
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Jiaoli Wen
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Min Fang
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Gensuo Zheng
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
| | - Jing Xie
- Third Clinical College of Wenzhou Medical University, Wenzhou People's Hospital, Wenzhou 325000, People's Republic of China
| | - Xi Zheng
- Analysis Center of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou 310058, People's Republic of China
| | - Lili Feng
- Department of Ophthalmology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, People's Republic of China
| | - Qinying Yan
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
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99855
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Ji G, Wu R, Zhang L, Yao J, Zhang C, Zhang X, Liu Z, Liu Y, Wang T, Fang C, Lu H. Global Analysis of Endogenously Intact S-Acylated Peptides Reveals Localization Differentiation of Heterogeneous Lipid Chains in Mammalian Cells. Anal Chem 2023; 95:13055-13063. [PMID: 37611173 DOI: 10.1021/acs.analchem.3c01484] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Abstract
S-acylation is a widespread lipidation form in eukaryotes in which various fatty acids can be covalently attached to specific cysteine residues. However, due to the low reactivity of the lipid moieties and lack of specific antibodies, purification of intact S-acylated peptides remains challenging. Here, we developed a pretreatment method for direct separation and global analysis of endogenously intact S-acylated peptides by nanographite fluoride-based solid-phase extraction (nGF-SPE), together with the investigation and optimization of the enrichment procedure as well as the LC-MS/MS analysis process. Consequently, we performed the first global profiling of endogenously intact S-acylated peptides, with 701 S-palmitoylated peptides from HeLa cell lysates in a restricted search. Furthermore, coupling the nGF-SPE method with open search mode, altogether 1119 intact S-acylated peptides were identified with the attached palmitate, palmitoleate, myristate, and octanoate chain, respectively, providing a global insight into the endogenously heterogeneous modification state. Notably, we found and validated that S-palmitoleoylation (C16:1) provided less affinity toward lipid rafts compared with S-palmitoylation (C16:0). This study developed the first straightforward way to characterize endogenously intact S-acylated peptides on a proteome-wide scale, providing the modified residues together with their attached lipid moieties simultaneously, which paves the way for further understanding of protein S-acylation.
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Affiliation(s)
- Guanghui Ji
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Roujun Wu
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Lei Zhang
- Institutes of Biomedical Sciences and NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai 200032, P. R. China
| | - Jun Yao
- Institutes of Biomedical Sciences and NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai 200032, P. R. China
| | - Cheng Zhang
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Xiaoqin Zhang
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Zhiyong Liu
- Institutes of Biomedical Sciences and NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai 200032, P. R. China
| | - Yang Liu
- Institutes of Biomedical Sciences and NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai 200032, P. R. China
| | - Ting Wang
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Caiyun Fang
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
| | - Haojie Lu
- Department of Chemistry and Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200433, P. R. China
- Institutes of Biomedical Sciences and NHC Key Laboratory of Glycoconjugates Research, Fudan University, Shanghai 200032, P. R. China
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99856
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Li SH, Zhang GR, He YT, Yang L, Li HL, Long CY, Cui Y, Wang XQ. Emission Wavelength-Tunable Bicyclic Dioxetane Chemiluminescent Probes for Precise In Vitro and In Vivo Imaging. Anal Chem 2023; 95:13191-13200. [PMID: 37610431 DOI: 10.1021/acs.analchem.3c02126] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Chemiluminescent probes have become increasingly popular in various research areas including precise tumor imaging and immunofluorescence analysis. Nevertheless, previously developed chemiluminescence probes are mainly limited to studying oxidation reaction-associated biological events. This study presents the first example of bioimaging applicable bicyclic dioxetane chemiluminescent probes with tunable emission wavelengths that range from 525 to 800 nm. These newly developed probes were able to detect the analytes of β-Gal, H2O2, and superoxide with high specificity and a limit of detection of 77 mU L-1, 96, and 28 nM, respectively. The bioimaging application of the probes was verified in ovarian and liver cancer cells and macrophage cells, allowing the detection of the content of β-Gal, H2O2, and superoxide inside the cells. The high specificity allowed us to image the xenografted tumor in mice. We expect that our probes will receive extensive applications in recording complex biomolecular events using noninvasive imaging techniques.
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Affiliation(s)
- Shen-Huan Li
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Guo-Rong Zhang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Yu-Ting He
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Liu Yang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Han-Lu Li
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Cheng-Yu Long
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Yue Cui
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
| | - Xue-Qiang Wang
- Molecular Science and Biomedicine Laboratory (MBL), State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Aptamer Engineering Center of Hunan Province, Hunan University, Changsha 410082, China
- Zhejiang Cancer Hospital, Hangzhou Institute of Medicine (HIM), The Chinese Academy of Sciences, Hangzhou, Zhejiang 310022, China
- Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education, Hangzhou Normal University, Hangzhou 311121, People's Republic of China
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99857
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Liang Y, Zhou X, Gopi S, Wang R. Distinct selectivity inside self-assembled coordination cages. Front Chem 2023; 11:1269471. [PMID: 37731456 PMCID: PMC10507711 DOI: 10.3389/fchem.2023.1269471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Accepted: 08/21/2023] [Indexed: 09/22/2023] Open
Abstract
Supramolecular containers have long been applied to regulate organic reactions with distinct selectivity, owing to their diverse functions such as the ability to pose a guest molecule(s) with a certain orientation and conformation. In this review, we try to illustrate how self-assembled coordination cages could achieve this goal. Two representative cage hosts, namely, self-assembled Pd(II)-ligand octahedral coordination cages ([Pd6L4]12+) and self-assembled Ga(III)-ligand tetrahedral coordination cages ([Ga4L6]12-) are selected as the pilot hosts that this mini review covers. Representative works in this area are presented here in brief.
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Affiliation(s)
| | | | - Sreeraj Gopi
- Center for Supramolecular Chemistry and Catalysis and Department of Chemistry, College of Science, Shanghai University, Shanghai, China
| | - Rui Wang
- Center for Supramolecular Chemistry and Catalysis and Department of Chemistry, College of Science, Shanghai University, Shanghai, China
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99858
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Schulz F, Hühn J, Werner M, Hühn D, Kvelstad J, Koert U, Wutke N, Klapper M, Fröba M, Baulin V, Parak WJ. Local Environments Created by the Ligand Coating of Nanoparticles and Their Implications for Sensing and Surface Reactions. Acc Chem Res 2023; 56:2278-2285. [PMID: 37607332 PMCID: PMC10552541 DOI: 10.1021/acs.accounts.3c00139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Indexed: 08/24/2023]
Abstract
ConspectusThe ligand shells of colloidal nanoparticles (NPs) can serve different purposes. In general, they provide colloidal stability by introducing steric repulsion between NPs. In the context of biological applications, the ligand shell plays a critical role in targeting, enabling NPs to achieve specific biodistributions. However, there is also another important feature of the ligand shell of NPs, namely, the creation of a local environment differing from the bulk of the solvent in which the NPs are dispersed. It is known that charged ligand shells can attract or repel ions and change the effective charge of a NP through Debye-Hückel screening. Positively charged ions, such as H+ (or H3O+) are attracted to negatively charged surfaces, whereas negatively charged ions, such as Cl- are repelled. The distribution of the ions around charged NP surfaces is a radial function of distance from the center of the NP, which is governed by a balance of electrostatic forces and entropy of ions and ligands. As a result, the ion concentration at the NP surface is different from its bulk equilibrium concentration, i.e., the charged ligand shell around the NPs has formed a distinct local environment. This not only applies to charged ligand shells but also follows a more general principle of induced condensation and depletion. Polar/apolar ligand shells, for example, result in a locally increased concentration of polar/apolar molecules. Similar effects can be seen for biocatalysts like enzymes immobilized in nanoporous host structures, which provide a special environment due to their surface chemistry and geometrical nanoconfinement. The formation of a local environment close to the ligand shell of NPs has profound implications for NP sensing applications. As a result, analyte concentrations close to the ligand shell, which are the ones that are measured, may be very different from the analyte concentrations in bulk. Based on previous work describing this effect, it will be discussed herein how such local environments, created by the choice of used ligands, may allow for tailoring the NPs' sensing properties. In general, the ligand shell around NPs can be attractive/repulsive for molecules with distinct properties and thus forms an environment that can modulate the specific response. Such local environments can also be optimized to modulate chemical reactions close to the NP surface (for example, by size filtering within pores) or to attract specific low abundance proteins. The importance hereby is that this is based on interaction with low selectivity between the ligands and the target molecules.
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Affiliation(s)
- Florian Schulz
- Fachbereich
Physik, Universität Hamburg, 22607 Hamburg, Germany
| | - Jonas Hühn
- Fachbereich
Physik, Philipps Universität Marburg, 35037 Marburg, Germany
| | - Marco Werner
- Leibniz-Institut
fur Polymerforschung Dresden e.V., 01069 Dresden, Germany
| | - Dominik Hühn
- Fachbereich
Physik, Philipps Universität Marburg, 35037 Marburg, Germany
| | - Julia Kvelstad
- Fachbereich
Chemie, Philipps Universität Marburg, 35043 Marburg, Germany
| | - Ulrich Koert
- Fachbereich
Chemie, Philipps Universität Marburg, 35043 Marburg, Germany
| | - Nicole Wutke
- Max Planck
Institute für Polymerforschung, 55128 Mainz, Germany
| | - Markus Klapper
- Max Planck
Institute für Polymerforschung, 55128 Mainz, Germany
| | - Michael Fröba
- Fachbereich
Chemie, Universität Hamburg, 20146 Hamburg, Germany
| | - Vladimir Baulin
- Departament
Quimica Fisica i Inorganica, Universitat
Rovira i Virgili, 43007 Tarragona, Spain
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99859
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Montserrat Pagès A, Hertog M, Nicolaï B, Spasic D, Lammertyn J. Unraveling the Kinetics of the 10-23 RNA-Cleaving DNAzyme. Int J Mol Sci 2023; 24:13686. [PMID: 37761982 PMCID: PMC10531344 DOI: 10.3390/ijms241813686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 08/31/2023] [Accepted: 08/31/2023] [Indexed: 09/29/2023] Open
Abstract
DNA-based enzymes, or DNAzymes, are single-stranded DNA sequences with the ability to catalyze various chemical reactions, including the cleavage of the bond between two RNA nucleotides. Lately, an increasing interest has been observed in these RNA-cleaving DNAzymes in the biosensing and therapeutic fields for signal generation and the modulation of gene expression, respectively. Additionally, multiple efforts have been made to study the effects of the reaction environment and the sequence of the catalytic core on the conversion of the substrate into product. However, most of these studies have only reported alterations of the general reaction course, but only a few have focused on how each individual reaction step is affected. In this work, we present for the first time a mathematical model that describes and predicts the reaction of the 10-23 RNA-cleaving DNAzyme. Furthermore, the model has been employed to study the effect of temperature, magnesium cations and shorter substrate-binding arms of the DNAzyme on the different kinetic rate constants, broadening the range of conditions in which the model can be exploited. In conclusion, this work depicts the prospects of such mathematical models to study and anticipate the course of a reaction given a particular environment.
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Affiliation(s)
- Aida Montserrat Pagès
- Department of Biosystems, Biosensors Group, KU Leuven—University of Leuven, 3001 Leuven, Belgium
| | - Maarten Hertog
- Department of Biosystems, Postharvest Group, KU Leuven—University of Leuven, 3001 Leuven, Belgium
| | - Bart Nicolaï
- Department of Biosystems, Postharvest Group, KU Leuven—University of Leuven, 3001 Leuven, Belgium
| | - Dragana Spasic
- Department of Biosystems, Biosensors Group, KU Leuven—University of Leuven, 3001 Leuven, Belgium
| | - Jeroen Lammertyn
- Department of Biosystems, Biosensors Group, KU Leuven—University of Leuven, 3001 Leuven, Belgium
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99860
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Mazloomi S, Amarloei A, Gholami F, Haghighat GA, Badalians Gholikandi G, Nourmoradi H, Mohammadi AA, Fattahi M, Nguyen Le B. Parametric study and process modeling for metronidazole removal by rhombic dodecahedron ZIF-67 crystals. Sci Rep 2023; 13:14654. [PMID: 37669982 PMCID: PMC10480145 DOI: 10.1038/s41598-023-41724-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Accepted: 08/30/2023] [Indexed: 09/07/2023] Open
Abstract
Metronidazole (MNZ) is an extensively used antibiotic against bacterial infections for humans and farm animals. Prevention of antibiotics discharge is essential to prevent adverse environmental and health impacts. A member of metal-organic frameworks, zeolite imidazole framework-67 with cobalt sulfate precursor (ZIF-67-SO4) and exceptional physio-chemical properties was prepared via room temperature precipitation to adsorb MNZ. The study framework was designed by Box-Behnken Design to evaluate the effect of pH, ZIF-67-SO4 dose, and contact time on adsorption efficiency. The polynomial model fitted the adsorption system indicated the optimal condition for 97% MNZ removal occurs at pH = 7, adsorbent dosage = 1 g/L, and mixing time = 60 min. The model also revealed that the removal increased with contact time and decreased at strong pH. Equilibrium and kinetic study also indicated the adsorption of MNZ followed the intra-particle diffusion model and the Langmuir isotherm model with a qmax = 63.03 mg/g. The insignificant loss in removal efficacy in use-reuse adsorption cycles reflected the practical viability of ZIF-67-SO4.
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Affiliation(s)
- Sajad Mazloomi
- Biotechnology and Medicinal Plants Research Center, Faculty of Medicine, Ilam University of Medical Sciences, Ilam, Iran
- Department of Environmental Health Engineering, School of Public Health, Ilam University of Medical Sciences, Ilam, Iran
| | - Ali Amarloei
- Department of Environmental Health Engineering, School of Public Health, Ilam University of Medical Sciences, Ilam, Iran
- Health and Environment Research Center, Ilam University of Medical Sciences, Ilam, Iran
| | - Faeze Gholami
- Department of Environmental Health Engineering, School of Public Health, Iran University of Medical Sciences, Tehran, Iran
| | - Gholam Ali Haghighat
- Faculty of Civil, Water and Environmental Engineering, Shahid Beheshti University, Tehran, Iran
- Department of Environmental Health Engineering, School of Health, Jiroft University of Medical Sciences, Jiroft, Iran
| | | | - Heshmatollah Nourmoradi
- Department of Environmental Health Engineering, School of Public Health, Ilam University of Medical Sciences, Ilam, Iran
- Health and Environment Research Center, Ilam University of Medical Sciences, Ilam, Iran
| | - Ali Akbar Mohammadi
- Department of Environmental Health Engineering, Neyshabur University of Medical Sciences, Neyshabur, Iran.
| | - Mehdi Fattahi
- Institute of Research and Development, Duy Tan University, Da Nang, Vietnam.
- School of Engineering &Technology, Duy Tan University, Da Nang, Vietnam.
| | - Binh Nguyen Le
- Institute of Research and Development, Duy Tan University, Da Nang, Vietnam
- School of Engineering &Technology, Duy Tan University, Da Nang, Vietnam
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99861
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Huang X, Chen L, Zhi W, Zeng R, Ji G, Cai H, Xu J, Wang J, Chen S, Tang Y, Zhang J, Zhou H, Sun P. Urchin-Shaped Au-Ag@Pt Sensor Integrated Lateral Flow Immunoassay for Multimodal Detection and Specific Discrimination of Clinical Multiple Bacterial Infections. Anal Chem 2023; 95:13101-13112. [PMID: 37526338 DOI: 10.1021/acs.analchem.3c01631] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
A new lateral flow immunoassay strip (LFIA) combining sensitive detection and identification of multiple bacteria remains a huge challenge. In this study, we first developed multifunctional urchin-shaped Au-Ag@Pt nanoparticles (UAA@P NPs) with a unique combination of colorimetric-SERS-photothermal-catalytic (CM/SERS/PT/CL) properties and integrated them with LFIA for multiplexed detection and specific discrimination of pathogenic bacteria in blood samples. Unlike the conventional LFIA that relied on antibody (Ab), this novel LFIA introduced 4-mercaptophenylboronic acid (4-MPBA) as an ideal Ab replacer that was functionalized on UAA@P NPs (UAA@P/M NPs) with outstanding binding and enrichment capacities toward bacteria. Taking Staphylococcus aureus (S. aureus) as model bacteria, the limit of detection (LOD) was 3 CFU/mL for SERS-LFIA, 27 CFU/mL for PT-LFIA, and 18 CFU/mL for CL-LFIA, three of which were over 330-fold, 37-fold, and 55-fold more sensitive than ordinary visual CM-LFIA, respectively. Besides, this SERS-LFIA is capable of identifying three types of bacterial spiked blood samples (E. coli, S. aureus, and P. aeruginosa) effectively according to specific bacterial Raman "fingerprints" by partial least-squares-discriminant analysis (PLS-DA). More importantly, this LFIA was successfully applied to blood samples with satisfactory recoveries from 90.3% to 108.8% and capable of identifying the infected patients (N = 4) from healthy subjects (N = 2) with great accuracy. Overall, the multimodal LFIA incorporates bacteria discrimination and quantitative detection, offering an avenue for early warning and diagnosis of bacterial infection.
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Affiliation(s)
- Xueqin Huang
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Lingzhi Chen
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Weixia Zhi
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Runmin Zeng
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Guanxu Ji
- Oncology Department, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Huaihong Cai
- College of Chemistry and Materials Science, Jinan University, Guangzhou 510632, China
| | - Jun Xu
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Jinyong Wang
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
- Institute of Infectious Diseases, Shenzhen Bay Laboratory, Shenzhen 518107, China
| | - Shanze Chen
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Yong Tang
- College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Jianglin Zhang
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Haibo Zhou
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
| | - Pinghua Sun
- The Second Clinical Medical College (Shenzhen People's Hospital), Jinan University, Shenzhen 518020, China
- The Fifth Affiliated Hospital of Jinan University, Heyuan 517000, China
- College of Pharmacy, Jinan University, Guangzhou 510632, China
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99862
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Delhali A, Assen AH, Mohammed A, Adil K, Belmabkhout Y. Enabling simultaneous valorization of tannery effluent and waste plastic via sustainable preparation of Cr-BDC MOFs for water adsorption. Sci Rep 2023; 13:14653. [PMID: 37670113 PMCID: PMC10480428 DOI: 10.1038/s41598-023-41840-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 08/31/2023] [Indexed: 09/07/2023] Open
Abstract
Advanced materials undergo a complex and lengthy process of maturation for scaling up and deployment, mainly due to the high cost of their precursors. Therefore, it is highly desirable to fabricate highly valuable advanced porous solid-state materials, with proven applicability, by sustainably combining organic and inorganic waste materials as precursors. This study successfully demonstrates the preparation of Cr-terephthalate Metal-Organic Frameworks (Cr-BDC MOFs) by combining metal salt and organic linker extracted from tannery effluent and waste plastic bottles. The waste from tanneries was used as the source of Cr(III), while terephthalic acid was obtained from the alkaline hydrolysis of plastic bottles. Appropriate extraction and assembly processes led to the functional Cr-BDC MOFs, MIL-101(Cr) and MIL-53(Cr). The prepared MOFs showed similar properties (surface area, hydrolytic and thermal stability, and water adsorption performance) to similar MOFs synthesized from pure commercial-grade precursors, as confirmed by N2 sorption, XRD, TGA, and water adsorption experiments. The advancements made in this study represent significant progress in overcoming the bottleneck of MOF production cost efficiency via applying sustainability principles and pave the way for easy scaling-up and maturation of MOF-based processes, for air dehumidification and water harvesting as a case study.
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Affiliation(s)
- Achraf Delhali
- Applied Chemistry and Engineering Research Centre of Excellence (ACER CoE), Mohammed VI Polytechnic University (UM6P), Lot 660 - Hay Moulay Rachid, 43150, Ben Guerir, Morocco
- Institut des Molécules et des Matériaux du Mans, Le Mans Université, Avenue Olivier Messiaen, 72085, Le Mans Cedex, France
| | - Ayalew H Assen
- Department of Chemistry, College of Natural Science, Wollo University, Dessie, Ethiopia.
| | - Aminat Mohammed
- Department of Chemistry, College of Natural Science, Wollo University, Dessie, Ethiopia
| | - Karim Adil
- Applied Chemistry and Engineering Research Centre of Excellence (ACER CoE), Mohammed VI Polytechnic University (UM6P), Lot 660 - Hay Moulay Rachid, 43150, Ben Guerir, Morocco.
- Institut des Molécules et des Matériaux du Mans, Le Mans Université, Avenue Olivier Messiaen, 72085, Le Mans Cedex, France.
| | - Youssef Belmabkhout
- Applied Chemistry and Engineering Research Centre of Excellence (ACER CoE), Mohammed VI Polytechnic University (UM6P), Lot 660 - Hay Moulay Rachid, 43150, Ben Guerir, Morocco.
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99863
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Shafiq I, Khalid M, Asghar MA, Baby R, Braga AAC, Alshehri SM, Ahmed S. Influence of azacycle donor moieties on the photovoltaic properties of benzo[c][1,2,5]thiadiazole based organic systems: a DFT study. Sci Rep 2023; 13:14630. [PMID: 37670033 PMCID: PMC10480204 DOI: 10.1038/s41598-023-41679-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 08/30/2023] [Indexed: 09/07/2023] Open
Abstract
Fullerene free organic chromophores are widely utilized to improve the efficacy of photovoltaic materials. Herein, we designed D-π-A-π-D form chromophores (TAZD1-TAZD5) via end-capped redistribution of donor moieties by keeping the same π-bridge and central acceptor unit for organic solar cells (OSCs). To analyze the photovoltaic characteristics of these derivatives, DFT estimations were accomplished at B3LYP/6-311 G (d,p) functional. Different investigations like frontier molecular orbital (FMO), absorption spectra (UV-Vis), density of states (DOS), binding energy (Eb), open circuit voltage (Voc), and transition density matrix (TDMs) were performed to examine the optical, photophysical and electronic characteristics of afore-mentioned chromophores. A suitable band gap (∆E = 2.723-2.659 eV) with larger bathochromic shift (λmax = 554.218-543.261 nm in acetonitrile) was seen in TAZD1-TAZD5. An effective charge transference from donor to acceptor via spacer was observed by FMO analysis which further supported by DOS and TDM. Further, lower binding energy values also supported the higher exciton dissociation and greater CT in TAZD1-TAZD5. Among all the designed chromophores, TAZD5 exhibited the narrowest Egap (2.659 eV) and maximum red-shifted absorption in solvent as well as gas phase i.e. 554.218 nm and 533.219 nm, respectively which perhaps as a result of the phenothiazine-based donor group (MPT). In a nutshell, all the tailored chromophores can be considered as efficient compounds for promising OSCs with a good Voc response, interestingly, TAZD5 is found to be excellent chromophores as compared to all these designed compounds.
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Affiliation(s)
- Iqra Shafiq
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
| | - Muhammad Khalid
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan.
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan.
| | - Muhammad Adnan Asghar
- Department of Chemistry, Division of Science and Technology, University of Education Lahore, Lahore, Pakistan
| | - Rabia Baby
- Department of Education, Sukkur IBA University, Sukkur, 65200, Pakistan
| | - Ataualpa A C Braga
- Departamento de Qu´ımica Fundamental, Instituto de Qu´ımica, Universidade de Sao˜ Paulo, Av. Prof. Lineu Prestes, 748, Sao Paulo, 05508-000, Brazil
| | - Saad M Alshehri
- Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Sarfraz Ahmed
- Wellman Center for Photomedicine, Harvard Medical School, Massachusetts General Hospital, Boston, MA, 02114, USA
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99864
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Meredith RJ, Carmichael I, Woods RJ, Serianni AS. MA'AT Analysis: Probability Distributions of Molecular Torsion Angles in Solution from NMR Spectroscopy. Acc Chem Res 2023; 56:2313-2328. [PMID: 37566472 DOI: 10.1021/acs.accounts.3c00286] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2023]
Abstract
ConspectusMonosaccharides adopt multiple conformations in solution, and this structural complexity increases significantly when they are assembled into oligosaccharides and polysaccharides. Characterization of the conformational properties of saccharides in solution by NMR spectroscopy has been hampered by several complicating factors, including difficulty interpreting spectra because of significant signal overlap, population averaging of NMR parameters, and unique properties of the spectra that make accurate measurements of NMR parameters prone to error (e.g., non-first-order effects on J-couplings). Current conformational assignments rely heavily on theoretical calculations, especially molecular dynamics (MD) simulations, to interpret the experimental NMR parameters. While these studies assert that the available experimental data fit the calculated models well, a lack of independent experimental validation of the force fields from which MD models are derived and an inability to test all possible models that might be compatible with the experimental data in an unbiased manner make the approach less than ideal.NMR spin couplings or J-couplings have been used as structure constraints in organic and other types of molecules for more than six decades. The dihedral angle dependence of vicinal (three-bond) 1H-1H spin couplings (3JHH) first described by Karplus led to an explosion of applications for a wide range of conformational problems. Other vicinal J-couplings (e.g., 3JCCOP, 3JHCOP, and 3JCOCH) have been found to exhibit similar dihedral angle dependencies. 3J values have been used to assign the preferred conformation in molecules that are conformationally homogeneous. However, many molecules, particularly those in biological systems, are conformationally flexible, which complicates structural interpretations of J values in solution. Three-state staggered models are often assumed in order to deconvolute the conformationally averaged J values into conformer populations. While widely applied, this approach assumes highly idealized models of molecular torsion angles that are likely to be poor representations of those found in solution. In addition, this treatment often gives negative populations and neglects the presence of librational averaging of molecular torsion angles.Recent work in this research group has focused on the development of a hybrid experimental-computational method, MA'AT analysis, that provides probability distributions of molecular torsion angles in solution that can be superimposed on those obtained by MD. Ensembles of redundant NMR spin couplings, including 3J (vicinal), 2J (geminal), and sometimes 1J (direct) values, are used in conjunction with circular statistics to provide single- and multistate models of these angles. MA'AT analysis provides accurate mean torsion angles and circular standard deviations (CSDs) of each mean angle that describe the librational motion about the angle. Both conformational equilibria and dynamics are revealed by the method. In this Account, the salient features of MA'AT analysis are discussed, including some applications to conformational problems involving saccharides and peptides.
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Affiliation(s)
- Reagan J Meredith
- Texas Biomedical Research Institute, San Antonio, Texas 78227, United States
| | | | - Robert J Woods
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States
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99865
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Song J, Li L, Fang Y, Lin Y, Wu L, Wan W, Wei G, Hua F, Ying J. FOXN Transcription Factors: Regulation and Significant Role in Cancer. Mol Cancer Ther 2023; 22:1028-1039. [PMID: 37566097 DOI: 10.1158/1535-7163.mct-23-0208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 06/29/2023] [Accepted: 07/19/2023] [Indexed: 08/12/2023]
Abstract
A growing number of studies have demonstrated that cancer development is closely linked to abnormal gene expression, including alterations in the transcriptional activity of transcription factors. The Forkhead box class N (FOXN) proteins FOXN1-6 form a highly conserved class of transcription factors, which have been shown in recent years to be involved in the regulation of malignant progression in a variety of cancers. FOXNs mediate cell proliferation, cell-cycle progression, cell differentiation, metabolic homeostasis, embryonic development, DNA damage repair, tumor angiogenesis, and other critical biological processes. Therefore, transcriptional dysregulation of FOXNs can directly affect cellular physiology and promote cancer development. Numerous studies have demonstrated that the transcriptional activity of FOXNs is regulated by protein-protein interactions, microRNAs (miRNA), and posttranslational modifications (PTM). However, the mechanisms underlying the molecular regulation of FOXNs in cancer development are unclear. Here, we reviewed the molecular regulatory mechanisms of FOXNs expression and activity, their role in the malignant progression of tumors, and their value for clinical applications in cancer therapy. This review may help design experimental studies involving FOXN transcription factors, and enhance their therapeutic potential as antitumor targets.
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Affiliation(s)
- Jiali Song
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Longshan Li
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Yang Fang
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Yue Lin
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Luojia Wu
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Wei Wan
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Gen Wei
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Fuzhou Hua
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
| | - Jun Ying
- Department of Anesthesiology, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, P.R. China
- Key Laboratory of Anesthesiology of Jiangxi Province, Nanchang City, Jiangxi Province, P.R. China
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99866
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Jia Y, Zhang L, Guan W, Lu C. Vesicles as a Multifunctional Microenvironment for Electrochemiluminescence Signal Amplification. Anal Chem 2023; 95:13273-13280. [PMID: 37616465 DOI: 10.1021/acs.analchem.3c02424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/26/2023]
Abstract
Vesicles as a typical interface-rich microenvironment can promote the reaction rate and the intermediate stability, which are promising for introduction in electrochemiluminescence (ECL) signal amplification. In this work, a kind of multilamellar vesicle obtained from sodium bis(2-ethylhexyl) sulfosuccinate (AOT) was used to modify the electrode surface. The AOT vesicle-modified microenvironment could significantly enhance the ECL performances for the luminol/O2 system in a neutral medium. The mechanism study demonstrated that the nanoscale multilamellar vesicles could maintain the vesicle structure on the electrode surface, which substantially improved the electron transfer and reaction rate, luminescence efficiency of the excited-state 3-aminophthalate anion, and stability of the superoxide anion radical. Alternatively, such a multifunctional microenvironment was also able to enhance the ECL signals from the tris(2,2'-bipyridine)ruthenium(II) (Ru(bpy)32+)/tripropylamine (TPrA) system. Moreover, another dodecyl dimethyl(3-sulfopropyl) ammonium hydroxide inner salt (DSB)-based vesicle was constructed to further verify the versatility of the vesicle-modified microenvironment for ECL signal amplification. Our work not only provides a versatile microenvironment for improving the efficiency of various ECL systems but also offers new insights for the microenvironment construction using the ordered assemblies in ECL fields.
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Affiliation(s)
- Yunxiu Jia
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Li Zhang
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Weijiang Guan
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Chao Lu
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, China
- Green Catalysis Center, College of Chemistry, Zhengzhou University, Zhengzhou 450001, China
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99867
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Lv M, Gao Y, Cai Z, Tang Z, Zhang Y, Wang T, Li W. A theoretical study on the excited state behavior of a series of novel triazole pyrimidine group fluorophores: ESIPT or ICT. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122706. [PMID: 37054571 DOI: 10.1016/j.saa.2023.122706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 03/30/2023] [Accepted: 04/02/2023] [Indexed: 05/14/2023]
Abstract
Fluoropurine analogues are a kind of unnatural bases, which are widely used in chemistry, biological science, pharmacy and other fields. At the same time, fluoropurine analogues of aza-heterocycles play an important role in medicinals research and development. In this work, the excited state behavior of a group of newly developed fluoropurine analogues of aza-heterocycles, triazole pyrimidinyl fluorophores, was comprehensively studied. The reaction energy profiles indicate that excited state intramolecular proton transfer (ESIPT) is difficult to happen, which is further proved by fluorescent spectra results. This work proposed a new and reasonable fluorescence mechanism based on the original experiment, and found that the large Stokes shift of the triazole pyrimidine fluorophore is due to the intramolecular charge transfer (ICT) process of the excited state. Our new discovery is of great significance for the application of this group of fluorescent compounds in other fields and the regulation of fluorescence properties.
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Affiliation(s)
- Meiheng Lv
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China; State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, PR China
| | - Yue Gao
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China
| | - Zexu Cai
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China
| | - Zhe Tang
- Life and Health Intelligent Research Institute, Tianjin University of Technology, Tianjin 300384, PR China
| | - Yuhang Zhang
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China
| | - Tingting Wang
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China
| | - Wenze Li
- College of Science, Shenyang University of Chemical Technology, Shenyang 110142, PR China.
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99868
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Keeler AM, Petruzziello PE, Boger EG, D'Ambrosio HK, Derbyshire ER. Exploring the Chain Release Mechanism from an Atypical Apicomplexan Polyketide Synthase. Biochemistry 2023; 62:2677-2688. [PMID: 37556730 DOI: 10.1021/acs.biochem.3c00272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/11/2023]
Abstract
Polyketide synthases (PKSs) are megaenzymes that form chemically diverse polyketides and are found within the genomes of nearly all classes of life. We recently discovered the type I PKS from the apicomplexan parasite Toxoplasma gondii, TgPKS2, which contains a unique putative chain release mechanism that includes ketosynthase (KS) and thioester reductase (TR) domains. Our bioinformatic analysis of the thioester reductase of TgPKS2, TgTR, suggests differences compared to other systems and hints at a possibly conserved release mechanism within the apicomplexan subclass Coccidia. To evaluate this release module, we first isolated TgTR and observed that it is capable of 4 electron (4e-) reduction of octanoyl-CoA to the primary alcohol, octanol, utilizing NADH. TgTR was also capable of generating octanol in the presence of octanal and NADH, but no reactions were observed when NADPH was supplied as a cofactor. To biochemically characterize the protein, we measured the catalytic efficiency of TgTR using a fluorescence assay and determined the TgTR binding affinity for cofactor and substrates using isothermal titration calorimetry (ITC). We additionally show that TgTR is capable of reducing an acyl carrier protein (ACP)-tethered substrate by liquid chromatography mass spectrometry and determine that TgTR binds to holo-TgACP4, its predicted cognate ACP, with a KD of 5.75 ± 0.77 μM. Finally, our transcriptional analysis shows that TgPKS2 is upregulated ∼4-fold in the parasite's cyst-forming bradyzoite stage compared to tachyzoites. Our study identifies features that distinguish TgPKS2 from well-characterized systems in bacteria and fungi and suggests it aids the T. gondii cyst stage.
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Affiliation(s)
- Aaron M Keeler
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Porter E Petruzziello
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Elizabeth G Boger
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Hannah K D'Ambrosio
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
| | - Emily R Derbyshire
- Department of Chemistry, Duke University, Durham, North Carolina 27708, United States
- Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710, United States
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99869
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Murúa P, Garvetto A, Egan S, Gachon CMM. The Reemergence of Phycopathology: When Algal Biology Meets Ecology and Biosecurity. ANNUAL REVIEW OF PHYTOPATHOLOGY 2023; 61:231-255. [PMID: 37253694 DOI: 10.1146/annurev-phyto-020620-120425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Viruses, bacteria, and eukaryotic symbionts interact with algae in a variety of ways to cause disease complexes, often shaping marine and freshwater ecosystems. The advent of phyconomy (a.k.a. seaweed agronomy) represents a need for a greater understanding of algal disease interactions, where underestimated cryptic diversity and lack of phycopathological basis are prospective constraints for algal domestication. Here, we highlight the limited yet increasing knowledge of algal pathogen biodiversity and the ecological interaction with their algal hosts. Finally, we discuss how ecology and cultivation experience contribute to and reinforce aquaculture practice, with the potential to reshape biosecurity policies of seaweed cultivation worldwide.
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Affiliation(s)
- Pedro Murúa
- Instituto de Acuicultura, Universidad Austral de Chile-Sede Puerto Montt, Los Lagos, Chile;
- Scottish Association for Marine Science, Scottish Marine Institute, Oban, United Kingdom
| | - Andrea Garvetto
- Scottish Association for Marine Science, Scottish Marine Institute, Oban, United Kingdom
- Institute of Microbiology, Universität Innsbruck, Innsbruck, Tyrol, Austria
| | - Suhelen Egan
- Centre for Marine Science and Innovation, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, Australia
| | - Claire M M Gachon
- Scottish Association for Marine Science, Scottish Marine Institute, Oban, United Kingdom
- Muséum National d'Histoire Naturelle, CNRS, Paris, France
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99870
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Richter-Dahlfors A, Kärkkäinen E, Choong FX. Fluorescent optotracers for bacterial and biofilm detection and diagnostics. SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS 2023; 24:2246867. [PMID: 37680974 PMCID: PMC10481766 DOI: 10.1080/14686996.2023.2246867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 07/03/2023] [Accepted: 08/07/2023] [Indexed: 09/09/2023]
Abstract
Effective treatment of bacterial infections requires methods that accurately and quickly identify which antibiotic should be prescribed. This review describes recent research on the development of optotracing methodologies for bacterial and biofilm detection and diagnostics. Optotracers are small, chemically well-defined, anionic fluorescent tracer molecules that detect peptide- and carbohydrate-based biopolymers. This class of organic molecules (luminescent conjugated oligothiophenes) show unique electronic, electrochemical and optical properties originating from the conjugated structure of the compounds. The photophysical properties are further improved as donor-acceptor-donor (D-A-D)-type motifs are incorporated in the conjugated backbone. Optotracers bind their biopolymeric target molecules via electrostatic interactions. Binding alters the optical properties of these tracer molecules, shown as altered absorption and emission spectra, as well as ON-like switch of fluorescence. As the optotracer provides a defined spectral signature for each binding partner, a fingerprint is generated that can be used for identification of the target biopolymer. Alongside their use for in situ experimentation, optotracers have demonstrated excellent use in studies of a number of clinically relevant microbial pathogens. These methods will find widespread use across a variety of communities engaged in reducing the effect of antibiotic resistance. This includes basic researchers studying molecular resistance mechanisms, academia and pharma developing new antimicrobials targeting biofilm infections and tests to diagnose biofilm infections, as well as those developing antibiotic susceptibility tests for biofilm infections (biofilm-AST). By iterating between the microbial world and that of plants, development of the optotracing technology has become a prime example of successful cross-feeding across the boundaries of disciplines. As optotracers offers a capacity to redefine the way we work with polysaccharides in the microbial world as well as with plant biomass, the technology is providing novel outputs desperately needed for global impact of the threat of antimicrobial resistance as well as our strive for a circular bioeconomy.
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Affiliation(s)
- Agneta Richter-Dahlfors
- AIMES – Center for the Advancement of Integrated Medical and Engineering Sciences at Karolinska Institutet and KTH Royal Institute of Technology, Stockholm, Sweden
- Department of Neuroscience, Karolinska Institutet, Stockholm, Sweden
- Department of Fiber and Polymer Technology, School of Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden
| | - Elina Kärkkäinen
- AIMES – Center for the Advancement of Integrated Medical and Engineering Sciences at Karolinska Institutet and KTH Royal Institute of Technology, Stockholm, Sweden
- Department of Neuroscience, Karolinska Institutet, Stockholm, Sweden
| | - Ferdinand X. Choong
- AIMES – Center for the Advancement of Integrated Medical and Engineering Sciences at Karolinska Institutet and KTH Royal Institute of Technology, Stockholm, Sweden
- Department of Neuroscience, Karolinska Institutet, Stockholm, Sweden
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99871
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Park SY, Labanti C, Pacalaj RA, Lee TH, Dong Y, Chin YC, Luke J, Ryu G, Minami D, Yun S, Park JI, Fang F, Park KB, Durrant JR, Kim JS. The State-of-the-Art Solution-Processed Single Component Organic Photodetectors Achieved by Strong Quenching of Intermolecular Emissive State and High Quadrupole Moment in Non-Fullerene Acceptors. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023:e2306655. [PMID: 37670609 DOI: 10.1002/adma.202306655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 08/21/2023] [Indexed: 09/07/2023]
Abstract
A bulk-heterojunction (BHJ) blend is commonly used as the photoactive layer in organic photodetectors (OPDs) to utilize the donor (D)/acceptor (A) interfacial energetic offset for exciton dissociation. However, this strategy often complicates optimization procedures, raising serious concerns over device processability, reproducibility, and stability. Herein, highly efficient OPDs fabricated with single-component organic semiconductors are demonstrated via solution-processing. The non-fullerene acceptors (NFAs) with strong intrinsic D/A character are used as the photoactive layer, where the emissive intermolecular charge transfer excitonic (CTE) states are formed within <1 ps, and efficient photocurrent generation is achieved via strong quenching of these CTE states by reverse bias. Y6 and IT-4F-based OPDs show excellent OPD performances, low dark current density (≈10-9 A cm-2 ), high responsivity (≥0.15 A W-1 ), high specific detectivity (>1012 Jones), and fast photo-response time (<10 µs), comparable to the state-of-the-art BHJ OPDs. Together with strong CTE state quenching by electric field, these excellent OPD performances are also attributed to the high quadrupole moments of NFA molecules, which can lead to large interfacial energetic offset for efficient CTE dissociation. This work opens a new way to realize efficient OPDs using single-component systems via solution-processing and provides important molecular design rules.
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Affiliation(s)
- Song Yi Park
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
| | - Chiara Labanti
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
| | - Richard A Pacalaj
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, White City Campus, London, W12 0BZ, UK
| | - Tack Ho Lee
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, White City Campus, London, W12 0BZ, UK
- Department of Chemistry Education, Graduate Department of Chemical Materials, Institute for Plastic Information and Energy Materials, Sustainable Utilization of Photovoltaic Energy Research Center, Pusan National University, 46241, Busan, Republic of Korea
| | - Yifan Dong
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, White City Campus, London, W12 0BZ, UK
| | - Yi-Chun Chin
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
| | - Joel Luke
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
| | - Gihan Ryu
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
| | - Daiki Minami
- CSE team, Innovation Center, Samsung Electronics, Co. Ltd., 1 Samsungjeonja-ro, Hwasung-si, Gyeonggi-do, 18448, Republic of Korea
| | - Sungyoung Yun
- Organic Materials Lab, Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Samsung-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do, 16678, Republic of Korea
| | - Jeong-Il Park
- Organic Materials Lab, Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Samsung-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do, 16678, Republic of Korea
| | - Feifei Fang
- Organic Materials Lab, Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Samsung-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do, 16678, Republic of Korea
| | - Kyung-Bae Park
- Organic Materials Lab, Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Samsung-ro, Yeongtong-gu, Suwon-si, Gyeonggi-do, 16678, Republic of Korea
| | - James R Durrant
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, White City Campus, London, W12 0BZ, UK
- SPECIFIC IKC, Faculty of Science and Engineering, Swansea University, Swansea, SA2 7AX, UK
| | - Ji-Seon Kim
- Department of Physics and Centre for Processable Electronics, Imperial College London, London, SW7 2AZ, UK
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99872
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Tai Q, Yu H, Gao M, Zhang X. In Situ Capturing and Counting Device for the Specific Depletion and Purification of Cancer-Derived Exosomes. Anal Chem 2023; 95:13113-13122. [PMID: 37609888 DOI: 10.1021/acs.analchem.3c01670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
From metabolic waste to biological mediators, exosomes have emerged as the key player in a variety of pathological processes, particularly in oncogenesis. The exosome-mediated communication network involves nearly every step of cancer progression, promoting the proliferation and immune escape of cancer cells. Therefore, the removal of cancer-derived exosomes has profound clinical significance. Current methods for exosome separation and enrichment are either for large-scale samples or require complex pretreatment processes, lacking effective methods for trace-volume exosome capture in situ. Herein, we have developed an in situ exosome capturing and counting device based on the antibody-functionalized capillary. Specific antibodies targeting exosome biomarkers were immobilized to the inner wall of the capillary via biotin-streptavidin interaction for direct cancer exosome capturing. Subsequent exosome staining enabled imaging and enumeration. Acceptable linearity and reproducibility were achieved with our device, with the capturing and detective range between 3.3 × 104 and 3.3 × 108 particles, surpassing the nanoparticle tracking analysis by 2 orders of magnitude while requiring merely 30 μL sample. We demonstrated that MCF-7-derived exosomes induced epithelial-mesenchymal transition of epithelial cells MCF-10A, and our method was able to completely or partially reverse the transition by complete depletion or specific depletion of cancer exosomes without any preprocessing. Moreover, both whole exosomes and cancer-specific exosomes alone from mimic blood samples were successfully captured and counted, without obvious non-specific adsorption. In all, our approach realized the in situ depletion and number-counting of cancer-derived exosomes directly from the complex humoral environment, having the potential to provide a comprehensive tumor therapeutic and prognosis evaluation tool by targeted hemodialysis and counting of tumor-derived exosomes.
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Affiliation(s)
- Qunfei Tai
- Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Hailong Yu
- Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Mingxia Gao
- Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Xiangmin Zhang
- Department of Chemistry, Fudan University, Shanghai 200438, China
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99873
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Gao XJ, Zhao Y, Gao X. Catalytic Signal Transduction Theory Enabled Virtual Screening of Nanomaterials for Medical Functions. Acc Chem Res 2023; 56:2366-2377. [PMID: 37589655 DOI: 10.1021/acs.accounts.3c00339] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Affiliation(s)
- Xuejiao J Gao
- College of Chemistry and Chemical Engineering, Jiangxi Normal University, Nanchang 330022 China
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology of China, Beijing 100190, China
| | - Yuliang Zhao
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology of China, Beijing 100190, China
| | - Xingfa Gao
- Laboratory of Theoretical and Computational Nanoscience, National Center for Nanoscience and Technology of China, Beijing 100190, China
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99874
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Fechtner S, Allen BE, Chriswell ME, Jubair WK, Robertson CE, Kofonow JN, Frank DN, Holers VM, Kuhn KA. 3,3-dimethyl-1-butanol and its metabolite 3,3-dimethylbutyrate ameliorate collagen-induced arthritis independent of choline trimethylamine lyase activity. RESEARCH SQUARE 2023:rs.3.rs-3297018. [PMID: 37720032 PMCID: PMC10503834 DOI: 10.21203/rs.3.rs-3297018/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
Previous studies have identified significant alterations in intestinal carnitine metabolism in mice with collagen-induced arthritis (CIA), potentially linking bacterial dysbiosis with autoimmunity. Bacterial trimethylamine (TMA) lyases metabolize dietary carnitine to TMA, which is oxidized in the liver to trimethylamine-N-oxide (TMAO). TMAO is associated with inflammatory diseases, such as atherosclerosis, whose immunologic processes mirror that of rheumatoid arthritis (RA). Therefore, we investigated the possibility of ameliorating CIA by inhibiting TMA lyase activity using 3,3-dimethyl-1-butanol (DMB) or fluoromethylcholine (FMC). During CIA, mice were treated with 1% vol/vol DMB, 100mg/kg FMC, or vehicle. DMB-treated mice demonstrated significant (>50%) reduction in arthritis severity compared to FMC and vehicle-treated mice. However, in contrast to FMC, DMB treatment did not reduce cecal TMA nor circulating TMAO concentrations. Using gas chromatography, we confirmed the effect of DMB is independent of TMA lyase inhibition. Further, we identified a novel host-derived metabolite of DMB, 3,3-dimethyl-1-butyric acid (DMBut), which also significantly reduced disease and proinflammatory cytokines in CIA mice. Altogether, our study suggests that DMB the immunomodulatory activity of DMB and/or its metabolites are protective in CIA. Elucidating its target and mechanism of action may provide new directions for RA therapeutic development.
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99875
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Grahn E, Kaufmann SV, Askarova M, Ninov M, Welp LM, Berger TK, Urlaub H, Kaupp UB. Control of intracellular pH and bicarbonate by CO 2 diffusion into human sperm. Nat Commun 2023; 14:5395. [PMID: 37669933 PMCID: PMC10480191 DOI: 10.1038/s41467-023-40855-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 08/14/2023] [Indexed: 09/07/2023] Open
Abstract
The reaction of CO2 with H2O to form bicarbonate (HCO3-) and H+ controls sperm motility and fertilization via HCO3--stimulated cAMP synthesis. A complex network of signaling proteins participates in this reaction. Here, we identify key players that regulate intracellular pH (pHi) and HCO3- in human sperm by quantitative mass spectrometry (MS) and kinetic patch-clamp fluorometry. The resting pHi is set by amiloride-sensitive Na+/H+ exchange. The sperm-specific putative Na+/H+ exchanger SLC9C1, unlike its sea urchin homologue, is not gated by voltage or cAMP. Transporters and channels implied in HCO3- transport are not detected, and may be present at copy numbers < 10 molecules/sperm cell. Instead, HCO3- is produced by diffusion of CO2 into cells and readjustment of the CO2/HCO3-/H+ equilibrium. The proton channel Hv1 may serve as a unidirectional valve that blunts the acidification ensuing from HCO3- synthesis. This work provides a new framework for the study of male infertility.
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Affiliation(s)
- Elena Grahn
- Max Planck Institute for Neurobiology of Behavior-caesar, Molecular Sensory Systems, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany
| | - Svenja V Kaufmann
- Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany
| | - Malika Askarova
- Max Planck Institute for Neurobiology of Behavior-caesar, Molecular Sensory Systems, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany
| | - Momchil Ninov
- Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany
- University Medical Center Göttingen, Institute of Clinical Chemistry, Bioanalytics, Robert-Koch-Strasse 40, 37075, Göttingen, Germany
| | - Luisa M Welp
- Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany
- University Medical Center Göttingen, Institute of Clinical Chemistry, Bioanalytics, Robert-Koch-Strasse 40, 37075, Göttingen, Germany
| | - Thomas K Berger
- Max Planck Institute for Neurobiology of Behavior-caesar, Molecular Sensory Systems, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany.
- Department of Neurophysiology, Institute of Physiology and Pathophysiology, Philipps-University Marburg, Deutschhausstrasse 1-2, 35037, Marburg, Germany.
| | - Henning Urlaub
- Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany.
- University Medical Center Göttingen, Institute of Clinical Chemistry, Bioanalytics, Robert-Koch-Strasse 40, 37075, Göttingen, Germany.
- Cluster of Excellence, Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells (MBExC), University of Göttingen, Göttingen, Germany.
| | - U Benjamin Kaupp
- Max Planck Institute for Neurobiology of Behavior-caesar, Molecular Sensory Systems, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany.
- Life & Medical Sciences Institute (LIMES), University Bonn, Carl-Troll-Strasse 31, 53115, Bonn, Germany.
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99876
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Korpanty J, Gianneschi NC. Exploration of Organic Nanomaterials with Liquid-Phase Transmission Electron Microscopy. Acc Chem Res 2023; 56:2298-2312. [PMID: 37580021 DOI: 10.1021/acs.accounts.3c00211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2023]
Abstract
ConspectusOrganic, soft materials with solution-phase nanoscale structures, such as emulsions, hydrogels, and thermally responsive materials, are inherently difficult to directly image via dry state and cryogenic-transmission electron microscopy (TEM). Therefore, we lack a routine microscopy method with sufficient resolution that can, in tandem with scattering techniques, probe the morphology and dynamics of these and many related systems. These challenges motivate liquid cell (LC) TEM method development, aimed at making the technique generally available and routine. To date, the field has been and continues to be dominantly focused on analyzing solution-phase inorganic materials. These mostly metallic nanoparticles have been studied at electron fluxes that can allow for high-resolution imaging, in the range of hundreds to thousands of e- Å-2 s-1. Despite excellent contrast, in these cases, one often contends with knock-on damage, direct radiolysis, and sensitization of the solvent by virtue of enhanced secondary electron production by the impinging electron beam. With an interest in soft materials, we face both related and distinct challenges, especially in achieving a high-enough contrast within solvated liquid cells. Additionally, we must be aware of artifacts associated with high-flux imaging conditions in terms of direct radiolysis of the solvent and the sensitive materials themselves. Regardless, with care, it has become possible to gain real insight into both static and dynamic organic nanomaterials in solution. This is due, in large part, to key advances that have been made, including improved sample preparation protocols, image capture technologies, and image analysis, which have allowed LCTEM to have utility. To enable solvated soft matter characterization by LCTEM, a generalizable multimodal workflow was developed by leveraging both experimental and theoretical precedents from across the LCTEM field and adjacent works concerned with solution radiolysis and nanoparticle tracking analyses. This workflow consists of (1) modeling electron beam-solvent interactions, (2) studying electron beam-sample interactions via LCTEM coupled with post-mortem analysis, (3) the construction of "damage plots" displaying sample integrity under varied imaging and sample conditions, (4) optimized LCTEM imaging, (5) image processing, and (6) correlative analysis via X-ray or light scattering. In this Account, we present this outlook and the challenges we continue to overcome in the direct imaging of dynamic solvated nanoscale soft materials.
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Affiliation(s)
- Joanna Korpanty
- Department of Chemistry, International Institute for Nanotechnology, Chemistry of Life Processes Institute, Simpson Querrey Institute, Lurie Cancer Center, Northwestern University, Evanston, Illinois 60208, United States
| | - Nathan C Gianneschi
- Department of Chemistry, International Institute for Nanotechnology, Chemistry of Life Processes Institute, Simpson Querrey Institute, Lurie Cancer Center, Northwestern University, Evanston, Illinois 60208, United States
- Department of Materials Science & Engineering, Department of Biomedical Engineering and Department of Pharmacology, Northwestern University, Evanston, Illinois 60208, United States
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99877
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Hall DR, Gauthier J, Peng H. Querying the In Vitro Proteome Cysteine Reactivity of 8:2 Fluorotelomer Acrylate. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:13015-13024. [PMID: 37607404 DOI: 10.1021/acs.est.3c02930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Despite the phase out of legacy per- and polyfluoroalkyl substances (PFAS), fluorotelomer-based polymers (FTP) have been used for many applications, notably textile surface coatings. FTPs are of a health concern due to their breakdown into legacy PFAS and the co-occurrence of fluorotelomer acrylate (FTAC) monomers, of which the latter may potentially react with cellular thiols. To evaluate this hypothesis, we employed fluorous-solid-phase extraction (FSPE), to enrich peptides covalently modified by 8:2 fluorotelomer acrylate (8:2 FTAC) and coupled it to a modified nano-liquid chromatography method for the identification of in vitro protein adducts using bottom-up data-dependent proteomics analysis. Using this method, over 100 unique peptides were detected with 8:2 FTAC modifications, although none of the modified cysteine residues were annotated active site nucleophiles. In parallel, a synthetic C6F13-iodoacetamide (F13-IAM) chemical probe was used to gauge the upper bound of PFAS-thiol reactivity. Over seven hundred peptides were detected with modifications but only 9 of 28 annotated active site cysteines in this dataset were modified by F13-IAM. Further exploration of the impacts of 8:2 FTAC adducts on protein function revealed that 8:2 FTAC modification promotes protein aggregation in vitro. These results suggest that 8:2 FTAC may exhibit significant proteome thiol reactivity and imply a more general mechanism of toxicity of PFAS-induced protein aggregation.
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Affiliation(s)
- David Ross Hall
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A1, Canada
- School of the Environment, University of Toronto, Toronto, Ontario M5S 1A1, Canada
| | - Jeremy Gauthier
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A1, Canada
| | - Hui Peng
- Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A1, Canada
- School of the Environment, University of Toronto, Toronto, Ontario M5S 1A1, Canada
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99878
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Yang Z, Li D, Yang K, Chen L, Wang J, Zhu X, Chen B. Optimized Water Supply in a Solar Evaporator for Simultaneous Freshwater Production and Salt Recycle. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:13047-13055. [PMID: 37607016 DOI: 10.1021/acs.est.3c03457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/23/2023]
Abstract
Solar desalination has shown great potential in alleviating global water scarcity. However, the trade-off between energy efficiency and salt rejection remains a challenge, restricting its practical applications. In this study, we report a three-dimensional nitrocellulose membrane-based evaporator featuring a high evaporation rate (1.5 kg m-2 h-1) and efficient salt precipitation at the edges. Additionally, the salt is isolated from the photothermal area of the evaporator and falls automatically with a salt recovery rate of 97 g m-2 h-1 in brine with 10 wt % salt content. The distinctive performance is attributed to the precise water supply control, which was adjusted by changing the resistance force and driven force in the evaporator. With a high evaporation rate, stable performance, and specific salt recovery ability, this solar evaporation structure holds great potential in water desalination and resource recovery.
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Affiliation(s)
- Zhi Yang
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Dawei Li
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Kaijie Yang
- Advanced Membranes and Porous Materials (AMPM) Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Lei Chen
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Jian Wang
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Xiaoying Zhu
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Baoliang Chen
- Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
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99879
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Zhang H, Yao M, Feng L, Wei Z, Wang Y, Han W, Zhang S. Escherichia coli-Based In Situ Triggerable Probe as an Amplifier for Sensitive Diagnosis and Penetrated Therapy of Cancer. Anal Chem 2023; 95:13073-13081. [PMID: 37610670 DOI: 10.1021/acs.analchem.3c01505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Escherichia coli (E. coli) was used for cancer therapy due to the tumor-targeting, catalytic, and surface-reducing properties. Effective diagnosis combined with treatment of cancer based on E. coli, however, was rarely demonstrated. In this study, E. coli was used to surface reduce HAuCl4 and as a carrier to modify riboflavin (Rf) and luminol (E-Au@Rf@Lum). After targeted delivery to tumor, the E-Au@Rf@Lum probe could actively emit 425 nm blue-violet chemiluminescence (CL) to achieve cell imaging for cancer diagnosis. Furthermore, this light could in situ trigger the photosensitizer (Rf) through CL resonance energy transfer, which produces reactive oxygen species (ROS) for accurate photodynamic therapy. In return, the excessive ROS enhanced the blue-violet light which was further absorbed by Rf, and ROS production was cyclically amplified. Abundant ROS broke down the dense extracellular matrix network and penetrated deep into tumors. Besides, E. coli with excellent catalytic property could decompose H2O2 to O2 to relieve tumor hypoxia for a long time and enhance the photosensitized process of Rf. By self-illumination, effective penetration, and tumor hypoxia relief, this work opens a self-amplified therapy modality to tumor.
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Affiliation(s)
- Huairong Zhang
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Mei Yao
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Lu Feng
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Zizhen Wei
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Yuqi Wang
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Wenxiu Han
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
| | - Shusheng Zhang
- Collaborative Innovation Center of Tumor Marker Detection Technology, Equipment and Diagnosis-Therapy Integration in Universities of Shandong, Shandong Province Key Laboratory of Detection Technology for Tumor Makers, School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, China
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99880
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Son FA, Fahy KM, Gaidimas MA, Smoljan CS, Wasson MC, Farha OK. Investigating the mechanical stability of flexible metal-organic frameworks. Commun Chem 2023; 6:185. [PMID: 37670014 PMCID: PMC10480183 DOI: 10.1038/s42004-023-00981-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 08/09/2023] [Indexed: 09/07/2023] Open
Abstract
As we continue to develop metal-organic frameworks (MOFs) for potential industrial applications, it becomes increasingly imperative to understand their mechanical stability. Notably, amongst flexible MOFs, structure-property relationships regarding their compressibility under pressure remain unclear. In this work, we conducted in situ variable pressure powder X-ray diffraction (PXRD) measurements up to moderate pressures (<1 GPa) using a synchrotron source on two families of flexible MOFs: (i) NU-1400 and NU-1401, and (ii) MIL-88B, MIL-88B-(CH3)2, and MIL-88B-(CH3)4. In this project scope, we found a positive correlation between bulk moduli and degree of flexibility, where increased rigidity (e.g., smaller swelling or breathing amplitude) arising from steric hindrance was deleterious, and observed reversibility in the unit cell compression of these MOFs. This study serves as a primer for the community to begin to untangle the factors that engender flexible frameworks with mechanical resilience.
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Affiliation(s)
- Florencia A Son
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, IL, 60208, USA
| | - Kira M Fahy
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, IL, 60208, USA
| | - Madeleine A Gaidimas
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, IL, 60208, USA
| | - Courtney S Smoljan
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA
| | - Megan C Wasson
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, IL, 60208, USA
| | - Omar K Farha
- Department of Chemistry and International Institute for Nanotechnology, Northwestern University, Evanston, IL, 60208, USA.
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA.
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99881
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Ferreira MML, de Souza SEG, da Silva CC, Souza LEA, Bicev RN, da Silva ER, Nakaie CR. Pyroglutamination-Induced Changes in the Physicochemical Features of a CXCR4 Chemokine Peptide: Kinetic and Structural Analysis. Biochemistry 2023; 62:2530-2540. [PMID: 37540799 DOI: 10.1021/acs.biochem.3c00124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/06/2023]
Abstract
We investigate the physicochemical effects of pyroglutamination on the QHALTSV-NH2 peptide, a segment of cytosolic helix 8 of the human C-X-C chemokine G-protein-coupled receptor type 4 (CXCR4). This modification, resulting from the spontaneous conversion of glutamine to pyroglutamic acid, has significant impacts on the physicochemical features of peptides. Using a static approach, we compared the transformation in different conditions and experimentally found that the rate of product formation increases with temperature, underscoring the need for caution during laboratory experiments to prevent glutamine cyclization. Circular dichroism experiments revealed that the QHALTSV-NH2 segment plays a minor role in the structuration of H8 CXCR4; however, its pyroglutaminated analogue interacts differently with its chemical environment, showing increased susceptibility to solvent variations compared to the native form. The pyroglutaminated analogue exhibits altered behavior when interacting with lipid models, suggesting a significant impact on its interaction with cell membranes. A unique combination of atomic force microscopy and infrared nanospectroscopy revealed that pyroglutamination affects supramolecular self-assembly, leading to highly packed molecular arrangements and a crystalline structure. Moreover, the presence of pyroglumatic acid has been found to favor the formation of amyloidogenic aggregates. Our findings emphasize the importance of considering pyroglutamination in peptide synthesis and proteomics and its potential significance in amyloidosis.
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Affiliation(s)
- Mariana M L Ferreira
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Sinval E G de Souza
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Caroline C da Silva
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Louise E A Souza
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Renata N Bicev
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Emerson R da Silva
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
| | - Clovis R Nakaie
- Departamento de Biofísica─Escola Paulista de Medicina, Universidade Federal de São Paulo─São Paulo, São Paulo 04023-062, Brazil
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99882
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Xing G, Shang Y, Ai J, Lin H, Wu Z, Zhang Q, Lin JM, Pu Q, Lin L. Nanozyme-Mediated Catalytic Signal Amplification for Microfluidic Biosensing of Foodborne Bacteria. Anal Chem 2023; 95:13391-13399. [PMID: 37610722 DOI: 10.1021/acs.analchem.3c03232] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Early detection of foodborne bacteria is urgently needed to ensure food quality and to avoid the outbreak of foodborne bacterial diseases. Here, a kind of metal-organic framework (Zr-MOF) modified with Pt nanoparticles (Pt-PCN-224) was designed as a peroxidase-like signal amplifier for microfluidic biosensing of foodborne bacteria. Taking Escherichia coli (E. coli) O157:H7 as a model, a linear range from 2.93 × 102 to 2.93 × 108 CFU/mL and a limit of detection of 2 CFU/mL were obtained. The whole detection procedure was integrated into a single microfluidic chip. Water, milk, and cabbage samples were successfully detected, showing consistency with the results of the standard culture method. Recoveries were in the range from 90 to 110% in spiked testing. The proposed microfluidic biosensor realized the specific and sensitive detection of E. coli O157:H7 within 1 h, implying broad prospects of MOF with biomimetic enzyme activities for biosensing.
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Affiliation(s)
- Gaowa Xing
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
- Beijing Key Laboratory of Microanalysis Methods and Instrumentation, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Yuting Shang
- Beijing Key Laboratory of Microanalysis Methods and Instrumentation, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Jiebing Ai
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Haifeng Lin
- Department of Bioengineering, Beijing Technology and Business University, Beijing 100048, China
| | - Zengnan Wu
- Beijing Key Laboratory of Microanalysis Methods and Instrumentation, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Qiang Zhang
- Beijing Key Laboratory of Microanalysis Methods and Instrumentation, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Jin-Ming Lin
- Beijing Key Laboratory of Microanalysis Methods and Instrumentation, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Qiaosheng Pu
- College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China
| | - Ling Lin
- Department of Bioengineering, Beijing Technology and Business University, Beijing 100048, China
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99883
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Wang Y, Zhang F, Liu J, Yang B, Yuan Y, Zhou Y, Bi S. A fluorescence nanoprobe of N-Acetyl-L-Cysteine capped CdTe QDs for sensitive detection of nitrofurazone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122709. [PMID: 37058841 DOI: 10.1016/j.saa.2023.122709] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 02/25/2023] [Accepted: 04/02/2023] [Indexed: 05/14/2023]
Abstract
A method was established for detecting the content of nitrofurazone (NFZ) by fluorescence quenching of N-Acetyl-L-Cysteine (NAC) coated cadmium telluride quantum dots (CdTe QDs). By means of transmission electron microscopy (TEM) and multispectral methods such as fluorescence and ultraviolet visible spectra (UV-vis), the synthesized CdTe QDs were characterized. The quantum yield (φ) of CdTe QDs was measured as 0.33 by reference method. The CdTe QDs had a better stability, the RSD of fluorescence intensity was 1.51% in three months. NFZ quenching the emission light of CdTe QDs was observed. The analyses of Stern-Volmer and time-resolved fluorescence suggested the quenching was static. The binding constants (Ka) between NFZ and CdTe QDs were 1.14 × 104 (293 K), 0.74 × 104 (303 K) and 0.51 × 104 (313 K) L mol-1. The hydrogen bond or van der Waals force was the dominated binding force between NFZ and CdTe QDs. The interaction was further characterized by UV-vis absorption as well as Fourier transform infrared spectra (FT-IR). Using fluorescence quenching effect, a quantitative determination of NFZ was carried out. The optimal experimental conditions were studied and determined as following: pH was 7 and contact time was 10 min. The effects of reagent addition sequence, temperature and the foreign substances including some metals (Mg2+; Zn2+; Ca2+; K+; Cu2+), glucose, bovine serum albumin (BSA) and furazolidone on the determination were studied. There was a high correlation between the concentration of NFZ (0.40 - 39.63 μg mL-1) and F0/F with the standard curve F0/F = 0.0262c + 0.9910 (r = 0.9994). The detection limit (LOD) reached 0.04 μg mL-1 (3S0/S). The contents of NFZ in beef and bacteriostatic liquid were detected. The recovery of NFZ was 95.13% - 103.03% and RSD was 0.66% - 1.37% (n = 5).
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Affiliation(s)
- Yuting Wang
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Fengming Zhang
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Jia Liu
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Bin Yang
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Yue Yuan
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Yanyan Zhou
- College of Chemistry, Changchun Normal University, Changchun 130032, China
| | - Shuyun Bi
- College of Chemistry, Changchun Normal University, Changchun 130032, China.
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99884
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Shen GB, Qian BC, Luo GZ, Fu YH, Zhu XQ. Thermodynamic Evaluations of Amines as Hydrides or Two Hydrogen Ions Reductants and Imines as Protons or Two Hydrogen Ions Acceptors, as Well as Their Application in Hydrogenation Reactions. ACS OMEGA 2023; 8:31984-31997. [PMID: 37692224 PMCID: PMC10483529 DOI: 10.1021/acsomega.3c03804] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 08/10/2023] [Indexed: 09/12/2023]
Abstract
Since the hydrogenation of imines (X) and the dehydrogenation of amines (XH2) generally involve the two hydrogen ions (H- + H+) transfer, the thermodynamic abilities of various amines releasing hydrides or two hydrogen ions as well as various imines accepting protons or two hydrogen ions are important and characteristic physical parameters. In this work, the pKa values of 84 protonated imines (XH+) in acetonitrile were predicted. Combining Gibbs free energy changes of amines releasing hydrides in acetonitrile from our previous work with the pKa(XH+) values, the Gibbs free energy changes of amines releasing two hydrogen ions and imines accepting two hydrogen ions were derived using Hess's law by constructing thermochemical cycles, and the thermodynamic evaluations of amines as hydrides or two hydrogen ions reductants and imines as protons or two hydrogen ions acceptors are well compared and discussed. Eventually, the practical application of thermodynamic data for amines and imines on hydrogenation feasibility, mechanism, and possible elementary steps was shown and discussed in this paper from the point of thermodynamics.
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Affiliation(s)
- Guang-Bin Shen
- School
of Medical Engineering, Jining Medical University, Jining, Shandong 272000, P. R. China
| | - Bao-Chen Qian
- School
of Medical Engineering, Jining Medical University, Jining, Shandong 272000, P. R. China
| | - Guang-Ze Luo
- School
of Medical Engineering, Jining Medical University, Jining, Shandong 272000, P. R. China
| | - Yan-Hua Fu
- College
of Chemistry and Environmental Engineering, Anyang Institute of Technology, Anyang, Henan 455000, China
| | - Xiao-Qing Zhu
- The
State Key Laboratory of Elemento-Organic Chemistry, Department of
Chemistry, Nankai University, Tianjin 300071, China
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99885
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Yang L, Wang Z. Bench-to-bedside: Innovation of small molecule anti-SARS-CoV-2 drugs in China. Eur J Med Chem 2023; 257:115503. [PMID: 37229831 PMCID: PMC10193775 DOI: 10.1016/j.ejmech.2023.115503] [Citation(s) in RCA: 48] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 04/19/2023] [Accepted: 05/16/2023] [Indexed: 05/27/2023]
Abstract
The ongoing COVID-19 pandemic has resulted in millions of deaths globally, highlighting the need to develop potent prophylactic and therapeutic strategies against SARS-CoV-2. Small molecule inhibitors (remdesivir, Paxlovid, and molnupiravir) are essential complements to vaccines and play important roles in clinical treatment of SARS-CoV-2. Many advances have been made in development of anti-SARS-CoV-2 inhibitors in China, but progress in discovery and characterization of pharmacological activity, antiviral mechanisms, and clinical efficacy are limited. We review development of small molecule anti-SARS-CoV-2 drugs (azvudine [approved by the NMPA of China on July 25, 2022], VV116 [approved by the NMPA of China on January 29, 2023], FB2001, WPV01, pentarlandir, and cepharanthine) in China and summarize their pharmacological activity, potential mechanisms of action, clinical trials and use, and important milestones in their discovery. The role of structural biology in drug development is also reviewed. Future studies should focus on development of diverse second-generation inhibitors with excellent oral bioavailability, superior plasma half-life, increased antiviral activity against SARS-CoV-2 and its variants, high target specificity, minimal side effects, reduced drug-drug interactions, and improved lung histopathology.
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Affiliation(s)
- Liyan Yang
- School of Physics and Physical Engineering, Qufu Normal University, Qufu, 273165, PR China; Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China.
| | - Zhonglei Wang
- Key Laboratory of Green Natural Products and Pharmaceutical Intermediates in Colleges and Universities of Shandong Province, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu, 273165, PR China; School of Pharmaceutical Sciences, Key Laboratory of Bioorganic Phosphorus, Chemistry & Chemical Biology (Ministry of Education), Tsinghua University, Beijing, 100084, PR China.
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99886
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Ghosh M, Raghav S, Ghosh P, Maity S, Mohela K, Jain D. Structural analysis of novel drug targets for mitigation of Pseudomonas aeruginosa biofilms. FEMS Microbiol Rev 2023; 47:fuad054. [PMID: 37771093 DOI: 10.1093/femsre/fuad054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 09/20/2023] [Accepted: 09/27/2023] [Indexed: 09/30/2023] Open
Abstract
Pseudomonas aeruginosa is an opportunistic human pathogen responsible for acute and chronic, hard to treat infections. Persistence of P. aeruginosa is due to its ability to develop into biofilms, which are sessile bacterial communities adhered to substratum and encapsulated in layers of self-produced exopolysaccharides. These biofilms provide enhanced protection from the host immune system and resilience towards antibiotics, which poses a challenge for treatment. Various strategies have been expended for combating biofilms, which involve inhibiting biofilm formation or promoting their dispersal. The current remediation approaches offer some hope for clinical usage, however, treatment and eradication of preformed biofilms is still a challenge. Thus, identifying novel targets and understanding the detailed mechanism of biofilm regulation becomes imperative. Structure-based drug discovery (SBDD) provides a powerful tool that exploits the knowledge of atomic resolution details of the targets to search for high affinity ligands. This review describes the available structural information on the putative target protein structures that can be utilized for high throughput in silico drug discovery against P. aeruginosa biofilms. Integrating available structural information on the target proteins in readily accessible format will accelerate the process of drug discovery.
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Affiliation(s)
- Moumita Ghosh
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
| | - Shikha Raghav
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
| | - Puja Ghosh
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
| | - Swagatam Maity
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
| | - Kavery Mohela
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
| | - Deepti Jain
- Transcription Regulation Lab, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Faridabad-Gurugram Expressway, Faridabad, Haryana-121001, India
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99887
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Pan M, Wang M, Yang L, Song Y, Jiang M, Yu X, Xu L. Construction of Metal Organic Framework-Derived Fe-N-C Oxidase Nanozyme for Rapid and Sensitive Detection of Alkaline Phosphatase. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:2496. [PMID: 37764526 PMCID: PMC10537703 DOI: 10.3390/nano13182496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/23/2023] [Accepted: 08/31/2023] [Indexed: 09/29/2023]
Abstract
Alkaline phosphatase (ALP) is a phosphomonoester hydrolase and serves as a biomarker in various diseases. However, current detection methods for ALP rely on bulky instruments, extended time, and complex operations, which are particularly challenging in resource-limited regions. Herein, we synthesized a MOF-derived Fe-N-C nanozyme to create biosensors for the coulometric and visual detection of ALP. Specifically, we found the Fe-N-C nanozyme can efficiently oxidize 3,3',5,5'-tetramethylbenzidine (TMB) to generate blue-colored tetramethyl benzidine (TMBox) without the need for H2O2. To construct the biosensor, we incorporated the ALP enzymatic catalytic reaction to inhibit the oxidation of TMB by Fe-N-C oxidase nanozyme. This biosensor showed rapid and highly sensitive detection of ALP in both buffer and clinical samples. The limit of detection (LOD) of our approach could be achieved at 3.38 U L-1, and the linear range was from 5 to 60 U L-1. Moreover, we also developed a visual detection for ALP by using a smartphone-based assay and facilitated practical and accessible point-and-care testing (POCT) in resource-limited areas. The visual detection method also achieved a similar LOD of 2.12 U L-1 and a linear range of 5-60 U L-1. Our approach presents potential applications for other biomarker detections by using ALP-based ELISA methods.
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Affiliation(s)
- Mengmeng Pan
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
| | - Ming Wang
- Department of Clinical Laboratory, Renmin Hospital of Wuhan University, Wuhan 430060, China;
| | - Linjiao Yang
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
| | - Yongli Song
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
| | - Ming Jiang
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
| | - Xu Yu
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
- Hubei Jiangxia Laboratory, Wuhan 430200, China
| | - Li Xu
- Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China; (M.P.); (Y.S.); (M.J.)
- Hubei Jiangxia Laboratory, Wuhan 430200, China
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99888
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Schweitzer-Stenner R, Kurbaj R, O'Neill N, Andrews B, Shah R, Urbanc B. Conformational Manifold Sampled by Two Short Linear Motif Segments Probed by Circular Dichroism, Vibrational, and Nuclear Magnetic Resonance Spectroscopy. Biochemistry 2023; 62:2571-2586. [PMID: 37595285 DOI: 10.1021/acs.biochem.3c00212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/20/2023]
Abstract
Disordered protein segments called short linear motifs (SLiM) serve as recognition sites for a variety of biological processes and act as targeting signals, modification, and ligand binding sites. While SLiMs do not adopt one of the known regular secondary structures, the conformational distribution might still reflect the structural propensities of their amino acid residues and possible interactions between them. In the past, conformational analyses of short peptides provided compelling evidence for the notion that individual residues are less conformationally flexible than locally expected for a random coil. Here, we combined various spectroscopies (NMR, IR, vibrational, and UV circular dichroism) to determine the Ramachandran plots of two SLiM motifs, i.e., GRRDSG and GRRTSG. They are two representatives of RxxS motifs that are capable of being phosphorylated by protein kinase A, an enzyme that plays a fundamental role in a variety of biological processes. Our results reveal that the nearest and non-nearest interactions between residues cause redistributions between polyproline II and β-strand basins while concomitantly stabilizing extended relative to turn-forming and helical structures. They also cause shifts in basin positions. With increasing temperature, β-strand populations become more populated at the expense of polyproline II. While molecular dynamics simulations with Amber ff14SB and CHARMM 36m force fields indicate residue-residue interactions, they do not account for the observed structural changes.
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Affiliation(s)
| | - Raghed Kurbaj
- Department of Chemistry, Drexel University, Philadelphia, PA19104Pennsylvania,United States
| | - Nichole O'Neill
- Department of Chemistry, Drexel University, Philadelphia, PA19104Pennsylvania,United States
| | - Brian Andrews
- Department of Physics, Drexel University, Philadelphia,PA19104Pennsylvania,United States
| | - Riya Shah
- Department of Physics, Drexel University, Philadelphia,PA19104Pennsylvania,United States
| | - Brigita Urbanc
- Department of Physics, Drexel University, Philadelphia,PA19104Pennsylvania,United States
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99889
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Dutta A, Sepehri A, Lazaridis T. Putative Pore Structures of Amyloid β 25-35 in Lipid Bilayers. Biochemistry 2023; 62:2549-2558. [PMID: 37582191 DOI: 10.1021/acs.biochem.3c00323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2023]
Abstract
The amyloid β peptide aggregates to form extracellular plaques in the brains of Alzheimer's disease patients. Certain of its fragments have been found to have similar properties to those of the full-length peptide. The best-studied of these is 25-35, which aggregates into fibrils, is toxic to neurons, and forms ion channels in synthetic lipid bilayers. Here, we investigate possible pore-forming structures of oligomers of this peptide in a POPC/POPG membrane. We consider octameric and decameric β-barrels of different topology, strand orientation, and shear, evaluate their stability in an implicit membrane model, and subject the best models to multimicrosecond all-atom molecular dynamics simulations. We find two decameric structures that are kinetically stable in membranes on this time scale: an imperfectly closed antiparallel β-barrel with K28 in the pore lumen and a short parallel β-barrel with K28 toward the membrane interface. Both structures exhibit dehydrated gaps in the pore lumen, which are larger for the antiparallel barrel. Based on these results, the experimental cation selectivity, the dependence of ion channel activity on voltage direction, and certain mutation data, the parallel model seems more compatible with experimental data.
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Affiliation(s)
- Ankita Dutta
- Department of Chemistry, City College of New York/CUNY, 160 Convent Avenue, New York, New York 10031, United States
- Graduate Program in Biochemistry, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
| | - Aliasghar Sepehri
- Department of Chemistry, City College of New York/CUNY, 160 Convent Avenue, New York, New York 10031, United States
| | - Themis Lazaridis
- Department of Chemistry, City College of New York/CUNY, 160 Convent Avenue, New York, New York 10031, United States
- Graduate Programs in Chemistry, Biochemistry, and Physics The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
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99890
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Sun G, Fang H. Fluorescent deactivation behaviors based on ESIPT and TICT of novel double target fluorescent probe and its sensing mechanism for Al 3+/Mg 2+: A TD-DFT study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122718. [PMID: 37054565 DOI: 10.1016/j.saa.2023.122718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/14/2023] [Accepted: 04/04/2023] [Indexed: 05/14/2023]
Abstract
Based on density functional theory (DFT) and time-dependent DFT (TD-DFT) methods with integral equation formula polarized continuum model (IEFPCM), the fluorescent behavior and recognizing mechanism of probe N'-((1-hydroxynaphthalen-2-yl)methylene)isoquinoline-3-carbohydrazide (NHMI) for Al3+/Mg2+ ion were investigated in more detail. Excited state intramolecular proton transfer (ESIPT) process in probe NHMI occurs in the stepwise pattern. The proton H5 of enol structure (E1) firstly moves from O4 to N6 to form single proton-transfer (SPT2) structure, and then the proton H2 of SPT2 transfers from N1 to N3 to form the stable double proton-transfer (DPT) structure. Subsequently, the transformation from DPT to its isomer (DPT1) induces the twisted intramolecular charge transfer (TICT) process. Two non-emissive TICT states (TICT1 and TICT2) were obtained, and TICT2 state quenches the fluorescence observed in the experiment. With the addition of aluminum (Al3+) or magnesium (Mg2+) ion, TICT process is prohibited by the coordination interaction between NHMI and Al3+/Mg2+, and the strong fluorescent signal is turned on. For probe NHMI, the twisted C-N single bond of acylhydrazone part leads to the TICT state. This sensing mechanism may inspire researchers to develop new probes from a different direction.
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Affiliation(s)
- Guotao Sun
- Department of Chemistry and Material Science, College of Science, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Hua Fang
- Department of Chemistry and Material Science, College of Science, Nanjing Forestry University, Nanjing 210037, People's Republic of China.
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99891
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Ivánczi M, Balogh B, Kis L, Mándity I. Molecular Dynamics Simulations of Drug-Conjugated Cell-Penetrating Peptides. Pharmaceuticals (Basel) 2023; 16:1251. [PMID: 37765059 PMCID: PMC10535489 DOI: 10.3390/ph16091251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 08/08/2023] [Accepted: 08/11/2023] [Indexed: 09/29/2023] Open
Abstract
Cell-penetrating peptides (CPPs) are small peptides capable of translocating through biological membranes carrying various attached cargo into cells and even into the nucleus. They may also participate in transcellular transport. Our in silico study intends to model several peptides and their conjugates. We have selected three CPPs with a linear backbone, including penetratin, a naturally occurring oligopeptide; two of its modified sequence analogues (6,14-Phe-penetratin and dodeca-penetratin); and three natural CPPs with a cyclic backbone: Kalata B1, the Sunflower trypsin inhibitor 1 (SFT1), and Momordica cochinchinensis trypsin inhibitor II (MCoTI-II). We have also built conjugates with the small-molecule drug compounds doxorubicin, zidovudine, and rasagiline for each peptide. Molecular dynamics (MD) simulations were carried out with explicit membrane models. The analysis of the trajectories showed that the interaction of penetratin with the membrane led to spectacular rearrangements in the secondary structure of the peptide, while cyclic peptides remained unchanged due to their high conformational stability. Membrane-peptide and membrane-conjugate interactions have been identified and compared. Taking into account well-known examples from the literature, our simulations demonstrated the utility of computational methods for CPP complexes, and they may contribute to a better understanding of the mechanism of penetration, which could serve as the basis for delivering conjugated drug molecules to their intracellular targets.
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Affiliation(s)
- Márton Ivánczi
- Institute of Organic Chemistry, Semmelweis University, Hőgyes Endre Utca 7., H-1092 Budapest, Hungary (L.K.)
| | - Balázs Balogh
- Institute of Organic Chemistry, Semmelweis University, Hőgyes Endre Utca 7., H-1092 Budapest, Hungary (L.K.)
| | - Loretta Kis
- Institute of Organic Chemistry, Semmelweis University, Hőgyes Endre Utca 7., H-1092 Budapest, Hungary (L.K.)
| | - István Mándity
- Institute of Organic Chemistry, Semmelweis University, Hőgyes Endre Utca 7., H-1092 Budapest, Hungary (L.K.)
- Artificial Transporters Research Group, Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok Körútja 2., H-1117 Budapest, Hungary
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99892
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Li M, Zhang L, Chen CW. Diverse Roles of Protein Palmitoylation in Cancer Progression, Immunity, Stemness, and Beyond. Cells 2023; 12:2209. [PMID: 37759431 PMCID: PMC10526800 DOI: 10.3390/cells12182209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 08/27/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023] Open
Abstract
Protein S-palmitoylation, a type of post-translational modification, refers to the reversible process of attachment of a fatty acyl chain-a 16-carbon palmitate acid-to the specific cysteine residues on target proteins. By adding the lipid chain to proteins, it increases the hydrophobicity of proteins and modulates protein stability, interaction with effector proteins, subcellular localization, and membrane trafficking. Palmitoylation is catalyzed by a group of zinc finger DHHC-containing proteins (ZDHHCs), whereas depalmitoylation is catalyzed by a family of acyl-protein thioesterases. Increasing numbers of oncoproteins and tumor suppressors have been identified to be palmitoylated, and palmitoylation is essential for their functions. Understanding how palmitoylation influences the function of individual proteins, the physiological roles of palmitoylation, and how dysregulated palmitoylation leads to pathological consequences are important drivers of current research in this research field. Further, due to the critical roles in modifying functions of oncoproteins and tumor suppressors, targeting palmitoylation has been used as a candidate therapeutic strategy for cancer treatment. Here, based on recent literatures, we discuss the progress of investigating roles of palmitoylation in regulating cancer progression, immune responses against cancer, and cancer stem cell properties.
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Affiliation(s)
- Mingli Li
- Department of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA;
| | - Leisi Zhang
- Department of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA;
| | - Chun-Wei Chen
- Department of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA;
- City of Hope Comprehensive Cancer Center, Duarte, CA 91010, USA
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99893
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Wei P, Gao P, Yang J, Pu W. Investigating the Behavior of Various Lubrication Regimes under Dynamic Conditions Using Nonequilibrium Molecular Dynamics. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:12365-12383. [PMID: 37611147 DOI: 10.1021/acs.langmuir.3c01468] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Abstract
It is crucial to comprehend how the oil film varies under dynamic operating conditions and the accompanying friction properties to better grasp the friction mechanism and control friction behavior. To model the friction characteristics under boundary lubrication (BL) and elastohydrodynamic lubrication (EHL), nonequilibrium molecular dynamics simulations with various numbers of hexadecane molecules as lubricating oil were conducted in this research under the conditions of dynamic speed and dynamic load. All the dynamic operating conditions have the form of sine waves, with various frequencies and amplitudes. According to the findings, the friction force is strongly connected with interfaces where relative sliding takes place, whose number, velocity difference, and the degree of solidification have significant influences. The variation of amplitude under dynamic load can cause a regular change in the density of the lubricating layer, while the variation of frequency can cause a change in molecular layer's range of motion. Both effects are crucial for friction. The structure of the lubricating layer with lower friction varies with various frequencies for dynamic velocity. Both high and small amplitudes of velocity offer advantages to form a stable film structure at low frequencies in the BL and EHL regions, while the amplitude in the BL area has minimal association with friction at high frequencies. At high frequencies in the EHL region, the friction rises as the amplitude of velocity grows and the lubricating layer becomes more unstable.
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Affiliation(s)
- Pengchong Wei
- School of Aeronautics and Astronautics, Sichuan University, Chengdu 610065, China
| | - Pan Gao
- School of Aeronautics and Astronautics, Sichuan University, Chengdu 610065, China
| | - Jialong Yang
- School of Aeronautics and Astronautics, Sichuan University, Chengdu 610065, China
| | - Wei Pu
- School of Aeronautics and Astronautics, Sichuan University, Chengdu 610065, China
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99894
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Srivastava P, Stierwalt DA, Elles CG. Broadband Two-Photon Absorption Spectroscopy with Stimulated Raman Scattering as an Internal Standard. Anal Chem 2023; 95:13227-13234. [PMID: 37603818 PMCID: PMC10484208 DOI: 10.1021/acs.analchem.3c02298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 08/10/2023] [Indexed: 08/23/2023]
Abstract
Two-photon absorption (2PA) spectroscopy provides valuable information about the nonlinear properties of molecules. In contrast with single-wavelength methods, broadband 2PA spectroscopy using a pump-probe approach gives a continuous 2PA spectrum across a wide range of transition energies without tuning the excitation laser. This contribution shows how stimulated Raman scattering from the solvent can be used as a convenient and robust internal standard for obtaining accurate absolute 2PA cross sections using the broadband approach. Stimulated Raman scattering has the same pump-probe overlap dependence as 2PA, thus eliminating the need to measure the intensity-dependent overlap of the pump and probe directly. Eliminating the overlap represents an important improvement because intensity profiles are typically the largest source of uncertainty in the measurement of absolute 2PA cross sections using any method. Raman scattering cross sections are a fundamental property of the solvent and therefore provide a universal standard that can be applied any time the 2PA and Raman signals are present within the same probe wavelength range. We demonstrate this approach using sample solutions of coumarin 153 in methanol, DMSO, and toluene, as well as fluorescein in water.
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Affiliation(s)
- Prasenjit Srivastava
- Department of Chemistry, University
of Kansas, Lawrence, Kansas 66045, United States
| | - David A. Stierwalt
- Department of Chemistry, University
of Kansas, Lawrence, Kansas 66045, United States
| | - Christopher G. Elles
- Department of Chemistry, University
of Kansas, Lawrence, Kansas 66045, United States
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99895
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Loh ZH, Hungerford NL, Ouwerkerk D, Klieve AV, Fletcher MT. Identification of Acid Hydrolysis Metabolites of the Pimelea Toxin Simplexin for Targeted UPLC-MS/MS Analysis. Toxins (Basel) 2023; 15:551. [PMID: 37755977 PMCID: PMC10535249 DOI: 10.3390/toxins15090551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 08/23/2023] [Accepted: 08/26/2023] [Indexed: 09/28/2023] Open
Abstract
Pimelea poisoning of cattle is a unique Australian toxic condition caused by the daphnane orthoester simplexin present in native Pimelea pasture plants. Rumen microorganisms have been proposed to metabolise simplexin by enzymatic reactions, likely at the orthoester and epoxide moieties of simplexin, but a metabolic pathway has not been confirmed. This study aimed to investigate this metabolic pathway through the analysis of putative simplexin metabolites. Purified simplexin was hydrolysed with aqueous hydrochloric acid and sulfuric acid to produce target metabolites for UPLC-MS/MS analysis of fermentation fluid samples, bacterial isolate samples, and other biological samples. UPLC-MS/MS analysis identified predicted hydrolysed products from both acid hydrolysis procedures with MS breakdown of these putative products sharing high-resolution accurate mass (HRAM) fragmentation ions with simplexin. However, targeted UPLC-MS/MS analysis of the biological samples failed to detect the H2SO4 degradation products, suggesting that the rumen microorganisms were unable to produce similar simplexin degradation products at detectable levels, or that metabolites, once formed, were further metabolised. Overall, in vitro acid hydrolysis was able to hydrolyse simplexin at the orthoester and epoxide functionalities, but targeted UPLC-MS/MS analysis of biological samples did not detect any of the identified simplexin hydrolysis products.
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Affiliation(s)
- Zhi Hung Loh
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Health and Food Sciences Precinct, Coopers Plains, QLD 4108, Australia; (Z.H.L.); (N.L.H.); (D.O.); (A.V.K.)
| | - Natasha L. Hungerford
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Health and Food Sciences Precinct, Coopers Plains, QLD 4108, Australia; (Z.H.L.); (N.L.H.); (D.O.); (A.V.K.)
| | - Diane Ouwerkerk
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Health and Food Sciences Precinct, Coopers Plains, QLD 4108, Australia; (Z.H.L.); (N.L.H.); (D.O.); (A.V.K.)
- Agri-Science Queensland, Department of Agriculture and Fisheries (DAF), Ecosciences Precinct, Dutton Park, QLD 4102, Australia
| | - Athol V. Klieve
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Health and Food Sciences Precinct, Coopers Plains, QLD 4108, Australia; (Z.H.L.); (N.L.H.); (D.O.); (A.V.K.)
| | - Mary T. Fletcher
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Health and Food Sciences Precinct, Coopers Plains, QLD 4108, Australia; (Z.H.L.); (N.L.H.); (D.O.); (A.V.K.)
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99896
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Jia Y, Yan B. Visual ratiometric fluorescence sensing of L-lactate in sweat by Eu-MOF and the design of logic devices. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122764. [PMID: 37119612 DOI: 10.1016/j.saa.2023.122764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Revised: 03/31/2023] [Accepted: 04/17/2023] [Indexed: 05/14/2023]
Abstract
Using 1, 4-H2NDC as ligand and Eu as the center metal, the lanthanide MOF Eu-NDC was synthesized by hydrothermal method. The material showed a fast ratiometric response to L-lactate, and the fluorescence of the material varied from red to blue with the growth of lactate concentration, which can be used as a fluorescent sensor for L-lactate in sweat. The sensor exhibited good fluorescence stability to interfering components in human sweat and good detection limits for lactate in artificial sweat. Based on this, a visualized molecular logic gate that can monitor sweat lactate levels was constructed, and the material's characteristic of showing different colors with lactate concentration changes was used to indicate possible hypoxia during exercise, opening a new path for combining sweat lactate monitoring with smart molecular devices.
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Affiliation(s)
- Yinghua Jia
- School of Chem. Science and Engineering, Tongji University, Siping Road 1239, Shanghai 200092, China
| | - Bing Yan
- School of Chem. Science and Engineering, Tongji University, Siping Road 1239, Shanghai 200092, China; School of Materials Science and Engineering, Liaocheng University, Liaocheng 252000, China.
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99897
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Varshney A, Mishra AP. Synthesis, spectral characterization, computational studies, antifungal, DNA interaction, antioxidant and fluorescence property of novel Schiff base ligand and its metal chelates. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 297:122765. [PMID: 37099994 DOI: 10.1016/j.saa.2023.122765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 03/30/2023] [Accepted: 04/17/2023] [Indexed: 05/14/2023]
Abstract
Cobalt, Copper, Nickel and Zinc coordinated metal complexes were synthesized by novel thiazole Schiff base ligand 2-ethoxy-4-((5-methylthiazol-2-ylimino)methyl) phenol derived from 3-ethoxy-4-hydroxybenzaldehyde and 2-amino- 5-methylthiazol. The synthesized compounds were spectrochemically characterized by elemental analysis, molar conductance, FT-IR, UV-Vis, Mass spectral analysis, Powdered-XRD and cyclic voltammetry. The thermal stability of synthesized complexes were investigated by using thermogravimetric analysis (TGA). Theoretical computational study were performed for all the synthesized compounds utilizing the DFT/B3LYP method at the 6-31G basic set for Schiff base ligand whereas LANL2DZ basis set for metal complexes. Molecular Electrostatic Potential (MEP), HOMO-LUMO, Mulliken charges and global reactivity descriptors, including chemical potential (μ), global softness (S), chemical hardness (η), and electrophilicity index (ω) were measured and correlated with antimicrobial activity. The synthesized thiazole Schiff base ligand and its coordinated metal complexes shows good antifungal agreement against Fusarium Oxysporum and Aspergillus Niger species. These compounds also exhibit DNA binding, DNA cleaving and antioxidant activity. All the synthesized molecules indicate potential fluorescence property.
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Affiliation(s)
- Anshita Varshney
- Department of Chemistry, Dr. Hari Singh Gour Vishwavidyalaya (a Central University), Sagar, Madhya Pradesh 470003, India.
| | - A P Mishra
- Department of Chemistry, Dr. Hari Singh Gour Vishwavidyalaya (a Central University), Sagar, Madhya Pradesh 470003, India.
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99898
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Gayathry TC, Gaur M, Mishra L, Mishra M, Barooah N, Bhasikuttan AC, Mohanty J. Supramolecular assembly of coumarin 7 with sulfobutylether-β-cyclodextrin for biomolecular applications. Front Chem 2023; 11:1245518. [PMID: 37731459 PMCID: PMC10508339 DOI: 10.3389/fchem.2023.1245518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 08/21/2023] [Indexed: 09/22/2023] Open
Abstract
Coumarins, in general, exhibit a wide range of photophysical characteristics and are highly sensitive to their microenvironment, and, therefore, their fluorescence characteristics have attracted immense attention as sensors in chemical and biological systems. In the present study, the supramolecular interaction of a bichromophoric coumarin dye, namely, Coumarin 7 (C7) with sulfobutylether-β-cyclodextrin (SBE7βCD) macrocyclic host at different pH conditions has been investigated by using optical spectroscopic techniques such as absorption, steady-state and time-resolved emissions, and circular dichroism measurements and compared with that of βCD. Considerable enhancement in the fluorescence intensity and lifetime of C7 on complexation with SBE7βCD proposes that non-radiative processes like TICT behavior are strictly hindered due to the confinement in the host cavity experienced by the C7 dye. The increase in the rotational correlation time evaluated from the fluorescence anisotropy decay kinetics further confirms the formation of tightly bound inclusion complexes. The binding constant values reveal that the monocationic form of dye at pH 3 shows ∼3 times stronger interaction with SBE7βCD than the neutral form of dye at pH 7 due to strong electrostatic cation-anion interaction. SBE7βCD:C7 exhibits an improved photostability and an upward pK a shift of 0.4 unit compared to the contrasting downward pK a shift of 0.5 with the βCD. The enhanced fluorescence yield and increased photostability have been exploited for bioimaging applications, and better images were captured by staining the Drosophila fly gut with the SBE7βCD:C7 complex. The enhancement in the binding interaction and the emission intensity were found to be responsive to external stimuli such as small competitive binders or metal ions and nearly quantitative dissociation of the complex was demonstrated to release the dye and would find stimuli-responsive applications.
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Affiliation(s)
- T. C. Gayathry
- Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, India
| | - Monika Gaur
- Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Training School Complex, Mumbai, India
| | - Lopamudra Mishra
- Department of Life Science, National Institute of Technology Rourkela, Rourkela, India
| | - Monalisa Mishra
- Department of Life Science, National Institute of Technology Rourkela, Rourkela, India
| | - Nilotpal Barooah
- Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Training School Complex, Mumbai, India
| | - Achikanath C. Bhasikuttan
- Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Training School Complex, Mumbai, India
| | - Jyotirmayee Mohanty
- Radiation and Photochemistry Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Training School Complex, Mumbai, India
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99899
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Tatsubo D, Suyama K, Sakamoto N, Tomohara K, Taniguchi S, Maeda I, Nose T. Determining the Sequence Dependency of Self-Assembly of Elastin-Like Peptides Using Short Peptide Analogues with Shuffled Repetitive Sequences. Biochemistry 2023; 62:2559-2570. [PMID: 37540116 DOI: 10.1021/acs.biochem.3c00146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
Synthetic elastin-like peptides (ELPs) that possess characteristic tropoelastin-derived hydrophobic repetitive sequences, such as (VPGVG)n, exhibit thermoresponsive reversible self-assembly. Although their thermoresponsive properties have been well-studied, the sequence-dependent and structural requirements for self-assembly remain ambiguous. In particular, it is still unclear whether the amino acid sequences derived from tropoelastin are necessary for self-assembly. In this study, 11 sequence-shuffled ELP analogues based on (FPGVG)5, which is a previously developed short ELP (sELP), were designed to elucidate the sequence-dependent and structural requirements for their self-assembly. Among them, eight shuffled peptides exhibited self-assembling properties, whereas the other three peptides were difficult to dissolve in water. Structural analyses revealed that the structural characteristics of the three insoluble peptides were different from those of their thermoresponsive analogues. Furthermore, the secondary structures of the peptide analogues possessing the self-assembly abilities were different from each other. These results suggest that the potential for self-assembly and water solubility of sELPs depend on the primary structure in each repeated unit. Moreover, several shuffled analogues exhibited more potent self-assembling properties than the original (FPGVG)5, indicating that shorter ELPs can be obtained using their novel motifs as repetitive units. We also observed that the presence of Pro-Gly sequence in the repeating units was advantageous in terms of peptide solubility. Although further analysis will be necessary to elucidate the molecular mechanism underlying the self-assembly of these sELPs, this study provides insights into the relationship between the amino acid sequence and the self-assembling ability of the peptides for developing new sELPs for various applications.
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Affiliation(s)
- Daiki Tatsubo
- Department of Chemistry, Faculty and Graduate School of Science, Kyushu University, Fukuoka 819-0395, Japan
| | - Keitaro Suyama
- Faculty of Arts and Science, Kyushu University, Fukuoka 819-0395, Japan
| | - Naoki Sakamoto
- Department of Chemistry, Faculty and Graduate School of Science, Kyushu University, Fukuoka 819-0395, Japan
| | - Keisuke Tomohara
- Faculty of Arts and Science, Kyushu University, Fukuoka 819-0395, Japan
| | - Suguru Taniguchi
- Department of Physics and Information Technology, Kyushu Institute of Technology, Iizuka 820-8502, Fukuoka, Japan
| | - Iori Maeda
- Department of Physics and Information Technology, Kyushu Institute of Technology, Iizuka 820-8502, Fukuoka, Japan
| | - Takeru Nose
- Department of Chemistry, Faculty and Graduate School of Science, Kyushu University, Fukuoka 819-0395, Japan
- Faculty of Arts and Science, Kyushu University, Fukuoka 819-0395, Japan
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99900
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Wertz AE, Teptarakulkarn P, Stein RE, Moore PJ, Shafaat HS. Rubredoxin Protein Scaffolds Sourced from Diverse Environmental Niches as an Artificial Hydrogenase Platform. Biochemistry 2023; 62:2622-2631. [PMID: 37579005 DOI: 10.1021/acs.biochem.3c00249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2023]
Abstract
Nickel-substituted rubredoxin (NiRd) from Desulfovibrio desulfuricans has previously been shown to act as both a structural and functional mimic of the [NiFe] hydrogenase. However, improvements both in turnover frequency and overpotential are needed to rival the native [NiFe] hydrogenase enzymes. Characterization of a library of NiRd mutants with variations in the secondary coordination sphere suggested that protein dynamics played a substantial role in modulating activity. In this work, rubredoxin scaffolds were selected from diverse organisms to study the effects of distal sequence variation on catalytic activity. It was found that though electrochemical catalytic activity was only slightly impacted across the series, the Rd sequence from a psychrophilic organism exhibited substantially higher levels of solution-phase hydrogen production. Additionally, Eyring analyses suggest that catalytic activation properties relate to the growth temperature of the parent organism, implying that the general correlation between the parent organism environment and catalytic activity often seen in naturally occurring enzymes may also be observed in artificial enzymes. Selecting protein scaffolds from hosts that inhabit diverse environments, particularly low-temperature environments, represents an alternative approach for engineering artificial metalloenzymes.
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Affiliation(s)
- Ashlee E Wertz
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W 18th Avenue, Columbus, Ohio 43210, United States
| | - Pathorn Teptarakulkarn
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W 18th Avenue, Columbus, Ohio 43210, United States
| | - Riley E Stein
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W 18th Avenue, Columbus, Ohio 43210, United States
| | - Peter J Moore
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W 18th Avenue, Columbus, Ohio 43210, United States
| | - Hannah S Shafaat
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W 18th Avenue, Columbus, Ohio 43210, United States
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