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Li T, Yang S, Kang X, Lei W, Qiao K, Zhang D, Lin H. The bHLH transcription factor gene AtUPB1 regulates growth by mediating cell cycle progression in Arabidopsis. Biochem Biophys Res Commun 2019; 518:565-572. [PMID: 31445703 DOI: 10.1016/j.bbrc.2019.08.088] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 08/15/2019] [Indexed: 10/26/2022]
Abstract
Plant growth, development and interaction with the environment involve the action of transcription factor. bHLH proteins play an essential and often conserved role in the plant kingdom. However, bHLH proteins that participate in the cell division process are less well known. Here, we report that the bHLH transcription factor gene AtUPB1 is involved in mediating cell cycle progression and root development. In yeast cells, AtUPB1 inhibits cells proliferation and the cells had increased numbers of nuclei. UPB1 overexpression decreased the expression of the cell division marker CYCB1-1, and CDKA1 expression could overcome the defect of UPB1 overexpression. Moreover, UPB1 could directly bind to the promoter region of the SIM and SMR1 genes to regulate cell cycle. These results support a new role for AtUPB1 regulating root meristem development by mediating the expression of SIM/SMR1 genes.
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Affiliation(s)
- Taotao Li
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China
| | - Shiyan Yang
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China
| | - Xinke Kang
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China
| | - Wei Lei
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China
| | - Kang Qiao
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China
| | - Dawei Zhang
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China.
| | - Honghui Lin
- Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, 610064, China.
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Mendoza-Cózatl DG, Gokul A, Carelse MF, Jobe TO, Long TA, Keyster M. Keep talking: crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:4197-4210. [PMID: 31231775 DOI: 10.1093/jxb/erz290] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 06/08/2019] [Indexed: 05/21/2023]
Abstract
Plants are capable of synthesizing all the molecules necessary to complete their life cycle from minerals, water, and light. This plasticity, however, comes at a high energetic cost and therefore plants need to regulate their economy and allocate resources accordingly. Iron-sulfur (Fe-S) clusters are at the center of photosynthesis, respiration, amino acid, and DNA metabolism. Fe-S clusters are extraordinary catalysts, but their main components (Fe2+ and S2-) are highly reactive and potentially toxic. To prevent toxicity, plants have evolved mechanisms to regulate the uptake, storage, and assimilation of Fe and S. Recent advances have been made in understanding the cellular economy of Fe and S metabolism individually, and growing evidence suggests that there is dynamic crosstalk between Fe and S networks. In this review, we summarize and discuss recent literature on Fe sensing, allocation, use efficiency, and, when pertinent, its relationship to S metabolism. Our future perspectives include a discussion about the open questions and challenges ahead and how the plant nutrition field can come together to approach these questions in a cohesive and more efficient way.
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Affiliation(s)
- David G Mendoza-Cózatl
- Division of Plant Sciences, C.S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA
| | - Arun Gokul
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, South Africa
| | - Mogamat F Carelse
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, South Africa
| | - Timothy O Jobe
- Botanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, Germany
| | - Terri A Long
- Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA
| | - Marshall Keyster
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, South Africa
- DST-NRF Centre of Excellence in Food Security, University of the Western Cape, Bellville, South Africa
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53
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Tissot N, Robe K, Gao F, Grant-Grant S, Boucherez J, Bellegarde F, Maghiaoui A, Marcelin R, Izquierdo E, Benhamed M, Martin A, Vignols F, Roschzttardtz H, Gaymard F, Briat JF, Dubos C. Transcriptional integration of the responses to iron availability in Arabidopsis by the bHLH factor ILR3. THE NEW PHYTOLOGIST 2019; 223:1433-1446. [PMID: 30773647 DOI: 10.1111/nph.15753] [Citation(s) in RCA: 75] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 02/12/2019] [Indexed: 05/21/2023]
Abstract
Iron (Fe) homeostasis is crucial for all living organisms. In mammals, an integrated posttranscriptional mechanism couples the regulation of both Fe deficiency and Fe excess responses. Whether in plants an integrated control mechanism involving common players regulates responses both to deficiency and to excess is still to be determined. In this study, molecular, genetic and biochemical approaches were used to investigate transcriptional responses to both Fe deficiency and excess. A transcriptional activator of responses to Fe shortage in Arabidopsis, called bHLH105/ILR3, was found to also negatively regulate the expression of ferritin genes, which are markers of the plant's response to Fe excess. Further investigations revealed that ILR3 repressed the expression of several structural genes that function in the control of Fe homeostasis. ILR3 interacts directly with the promoter of its target genes, and repressive activity was conferred by its dimerisation with bHLH47/PYE. Last, this study highlighted that important facets of plant growth in response to Fe deficiency or excess rely on ILR3 activity. Altogether, the data presented herein support that ILR3 is at the centre of the transcriptional regulatory network that controls Fe homeostasis in Arabidopsis, in which it acts as both transcriptional activator and repressor.
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Affiliation(s)
- Nicolas Tissot
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Kevin Robe
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Fei Gao
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Susana Grant-Grant
- Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, 8331150, Santiago, Chile
| | - Jossia Boucherez
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Fanny Bellegarde
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Amel Maghiaoui
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Romain Marcelin
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Esther Izquierdo
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Moussa Benhamed
- Institut of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405, Orsay, France
| | - Antoine Martin
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Florence Vignols
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Hannetz Roschzttardtz
- Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, 8331150, Santiago, Chile
| | - Frédéric Gaymard
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | | | - Christian Dubos
- BPMP, Univ Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
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54
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Armas AM, Balparda M, Turowski VR, Busi MV, Pagani MA, Gomez-Casati DF. Altered levels of mitochondrial NFS1 affect cellular Fe and S contents in plants. PLANT CELL REPORTS 2019; 38:981-990. [PMID: 31065779 DOI: 10.1007/s00299-019-02419-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Accepted: 04/29/2019] [Indexed: 05/18/2023]
Abstract
The ISC Fe-S cluster biosynthetic pathway would play a key role in the regulation of iron and sulfur homeostasis in plants. The Arabidopsis thaliana mitochondrial cysteine desulfurase AtNFS1 has an essential role in cellular ISC Fe-S cluster assembly, and this pathway is one of the main sinks for iron (Fe) and sulfur (S) in the plant. In different plant species it has been reported a close relationship between Fe and S metabolisms; however, the regulation of both nutrient homeostasis is not fully understood. In this study, we have characterized AtNFS1 overexpressing and knockdown mutant Arabidopsis plants. Plants showed alterations in the ISC Fe-S biosynthetic pathway genes and in the activity of Fe-S enzymes. Genes involved in Fe and S uptakes, assimilation, and regulation were up-regulated in overexpressing plants and down-regulated in knockdown plants. Furthermore, the plant nutritional status in different tissues was in accordance with those gene activities: overexpressing lines accumulated increased amounts of Fe and S and mutant plant had lower contents of S. In summary, our results suggest that the ISC Fe-S cluster biosynthetic pathway plays a crucial role in the homeostasis of Fe and S in plants, and that it may be important in their regulation.
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Affiliation(s)
- Alejandro M Armas
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000, Rosario, Argentina
| | - Manuel Balparda
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000, Rosario, Argentina
| | - Valeria R Turowski
- Instituto de Investigaciones Biotecnológicas, IIB-INTECH, CONICET-UNSAM, Chascomús, Argentina
| | - Maria V Busi
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000, Rosario, Argentina
| | - Maria A Pagani
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000, Rosario, Argentina
| | - Diego F Gomez-Casati
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000, Rosario, Argentina.
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55
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Colchado-López J, Cervantes RC, Rosas U. A Linear Model to Describe Branching and Allometry in Root Architecture. PLANTS (BASEL, SWITZERLAND) 2019; 8:plants8070218. [PMID: 31336829 PMCID: PMC6681317 DOI: 10.3390/plants8070218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 06/26/2019] [Accepted: 07/08/2019] [Indexed: 05/31/2023]
Abstract
Root architecture is a complex structure that comprises multiple traits of the root phenotype. Novel platforms and models have been developed to better understand root architecture. In this methods paper, we introduce a novel allometric model, named rhizochron index (m), which describes lateral root (LR) branching and elongation patterns across the primary root (PR). To test our model, we obtained data from 16 natural accessions of Arabidopsis thaliana at three stages of early root development to measure conventional traits of root architecture (e.g., PR and LR length), and extracted the rhizochron index (m). In addition, we tested previously published datasets to assess the utility of the rhizochron index (m) to distinguish mutants and environmental effects on root architecture. Our results indicate that rhizochron index (m) is useful to distinguish the natural variations of root architecture between A. thaliana accessions, but not across early stages of root development. Correlation analyses in these accessions showed that m is a novel trait that partially captures information from other root architecture traits such as total lateral root length, and the ratio between lateral root and primary root lengths. Moreover, we found that the rhizochron index was useful to distinguish ABA effect on root architecture, as well as the mutant pho1 phenotype. We propose the rhizochron index (m) as a new feature of the root architectural system to be considered, in addition to conventional traits in future investigations.
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Affiliation(s)
- Joel Colchado-López
- Jardín Botánico, Instituto de Biología, Universidad Nacional Autónoma de México, 04510 Mexico City, Mexico
| | - R Cristian Cervantes
- Jardín Botánico, Instituto de Biología, Universidad Nacional Autónoma de México, 04510 Mexico City, Mexico
| | - Ulises Rosas
- Jardín Botánico, Instituto de Biología, Universidad Nacional Autónoma de México, 04510 Mexico City, Mexico.
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56
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Trevisan S, Trentin AR, Ghisi R, Masi A, Quaggiotti S. Nitrate affects transcriptional regulation of UPBEAT1 and ROS localisation in roots of Zea mays L. PHYSIOLOGIA PLANTARUM 2019; 166:794-811. [PMID: 30238472 DOI: 10.1111/ppl.12839] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 08/23/2018] [Accepted: 09/13/2018] [Indexed: 06/08/2023]
Abstract
Nitrogen (N) is an indispensable nutrient for crops but its availability in agricultural soils is subject to considerable fluctuation. Plants have developed plastic responses to external N fluctuations in order to optimise their development. The coordinated action of nitric oxide and auxin seems to allow the cells of the root apex transition zone (TZ) of N-deprived maize to rapidly sense nitrate (NO3 - ). Preliminary results support the hypothesis that reactive oxygen species (ROS) signalling might also have a role in this pathway, probably through a putative maize orthologue of UPBEAT1 (UPB1). To expand on this hypothesis and better understand the different roles played by different root portions, we investigated the dynamics of ROS production, and the molecular and biochemical regulation of the main components of ROS production and scavenging in tissues of the meristem, transition zone, elongation zone and maturation zone of maize roots. The results suggest that the inverse regulation of ZmUPB1 and ZmPRX112 transcription observed in cells of the TZ in response to nitrogen depletion or NO3 - supply affects the balance between superoxide (O2 •- ) and hydrogen peroxide (H2 O2 ) in the root apex and consequently triggers differential root growth. This explanation is supported by additional results on the overall metabolic and transcriptional regulation of ROS homeostasis.
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Affiliation(s)
- Sara Trevisan
- Department of Agriculture, Food, Natural Resources, Animals and the Environment, University of Padua, 35020, Legnaro, Padua, Italy
| | - Anna R Trentin
- Department of Agriculture, Food, Natural Resources, Animals and the Environment, University of Padua, 35020, Legnaro, Padua, Italy
| | - Rossella Ghisi
- Department of Agriculture, Food, Natural Resources, Animals and the Environment, University of Padua, 35020, Legnaro, Padua, Italy
| | - Antonio Masi
- Department of Agriculture, Food, Natural Resources, Animals and the Environment, University of Padua, 35020, Legnaro, Padua, Italy
| | - Silvia Quaggiotti
- Department of Agriculture, Food, Natural Resources, Animals and the Environment, University of Padua, 35020, Legnaro, Padua, Italy
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57
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The Adaptive Mechanism of Plants to Iron Deficiency via Iron Uptake, Transport, and Homeostasis. Int J Mol Sci 2019; 20:ijms20102424. [PMID: 31100819 PMCID: PMC6566170 DOI: 10.3390/ijms20102424] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 05/11/2019] [Accepted: 05/14/2019] [Indexed: 01/31/2023] Open
Abstract
Iron is an essential element for plant growth and development. While abundant in soil, the available Fe in soil is limited. In this regard, plants have evolved a series of mechanisms for efficient iron uptake, allowing plants to better adapt to iron deficient conditions. These mechanisms include iron acquisition from soil, iron transport from roots to shoots, and iron storage in cells. The mobilization of Fe in plants often occurs via chelating with phytosiderophores, citrate, nicotianamine, mugineic acid, or in the form of free iron ions. Recent work further elucidates that these genes’ response to iron deficiency are tightly controlled at transcriptional and posttranscriptional levels to maintain iron homeostasis. Moreover, increasing evidences shed light on certain factors that are identified to be interconnected and integrated to adjust iron deficiency. In this review, we highlight the molecular and physiological bases of iron acquisition from soil to plants and transport mechanisms for tolerating iron deficiency in dicotyledonous plants and rice.
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58
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Bencke-Malato M, De Souza AP, Ribeiro-Alves M, Schmitz JF, Buckeridge MS, Alves-Ferreira M. Short-term responses of soybean roots to individual and combinatorial effects of elevated [CO 2] and water deficit. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 280:283-296. [PMID: 30824006 DOI: 10.1016/j.plantsci.2018.12.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Revised: 11/14/2018] [Accepted: 12/18/2018] [Indexed: 05/15/2023]
Abstract
Climate change increasingly threatens plant growth and productivity. Soybean (Glycine max) is one of the most important crops in the world. Although its responses to increased atmospheric carbon dioxide concentration ([CO2]) have been previously studied, root molecular responses to elevated [CO2] (E[CO2]) or the combination/interaction of E[CO2] and water deficit remain unexamined. In this study, we evaluated the individual and combinatory effects of E[CO2] and water deficit on the physiology and root molecular responses in soybean. Plants growing under E[CO2] exhibited increased photosynthesis that resulted in a higher biomass, plant height, and leaf area. E[CO2] decreased the transcripts levels of genes involved in iron uptake and transport, antioxidant activity, secondary metabolism and defense, and stress responses in roots. When plants grown under E[CO2] are treated with instantaneous water deficit, E[CO2] reverted the expression of water deficit-induced genes related to stress, defense, transport and nutrient deficiency. Furthermore, the interaction of both treatments uniquely affected the expression of genes. Both physiological and transcriptomic analyses demonstrated that E[CO2] may mitigate the negative effects of water deficit on the soybean roots. In addition, the identification of genes that are modulated by the interaction of E[CO2] and water deficit suggests an emergent response that is triggered only under this specific condition.
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Affiliation(s)
- Marta Bencke-Malato
- Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Biologia, s/n Prédio do CCS, 2° andar-sala 93, Rio de Janeiro, RJ, 219410-970, Brazil.
| | - Amanda Pereira De Souza
- Departamento de Botânica, Universidade de São Paulo (USP), Instituto de Biociências, Rua do Matão, 277, sala 122, Cidade Universitária - Butantã, São Paulo, SP, 05508-090, Brazil.
| | - Marcelo Ribeiro-Alves
- Instituto Nacional de Infectologia Evandro Chagas, Fundação Oswaldo Cruz -(FIOCRUZ) Av. Brasil, 4365-Manguinhos, Rio de Janeiro, RJ, 21040-900, Brazil.
| | - Jacqueline Flores Schmitz
- Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Biologia, s/n Prédio do CCS, 2° andar-sala 93, Rio de Janeiro, RJ, 219410-970, Brazil.
| | - Marcos Silveira Buckeridge
- Departamento de Botânica, Universidade de São Paulo (USP), Instituto de Biociências, Rua do Matão, 277, sala 122, Cidade Universitária - Butantã, São Paulo, SP, 05508-090, Brazil.
| | - Marcio Alves-Ferreira
- Departamento de Genética, Universidade Federal do Rio de Janeiro (UFRJ), Instituto de Biologia, s/n Prédio do CCS, 2° andar-sala 93, Rio de Janeiro, RJ, 219410-970, Brazil.
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59
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Pottier M, Dumont J, Masclaux-Daubresse C, Thomine S. Autophagy is essential for optimal translocation of iron to seeds in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:859-869. [PMID: 30395253 PMCID: PMC6363094 DOI: 10.1093/jxb/ery388] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 10/23/2018] [Indexed: 05/18/2023]
Abstract
Micronutrient deficiencies affect a large part of the world's population. These deficiencies are mostly due to the consumption of grains with insufficient content of iron (Fe) or zinc (Zn). Both de novo uptake by roots and recycling from leaves may provide seeds with nutrients. Autophagy, which is a conserved mechanism for nutrient recycling in eukaryotes, was shown to be involved in nitrogen remobilization to seeds. Here, we have investigated the role of this mechanism in micronutrient translocation to seeds. We found that Arabidopsis thaliana plants impaired in autophagy display defects in nutrient remobilization to seeds. In the atg5-1 mutant, which is completely defective in autophagy, the efficiency of Fe translocation from vegetative organs to seeds was severely decreased even when Fe was provided during seed formation. Combining atg5-1 with the sid2 mutation that counteracts premature senescence associated with autophagy deficiency and using 57Fe pulse labeling, we propose a two-step mechanism in which Fe taken up de novo during seed formation is first accumulated in vegetative organs and subsequently remobilized to seeds. Finally, we show that translocation of Zn and manganese (Mn) to seeds is also dependent on autophagy. Fine-tuning autophagy during seed formation opens up new possibilities to improve micronutrient remobilization to seeds.
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Affiliation(s)
- Mathieu Pottier
- Institut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
- Present address: InBioS, PhytoSYSTEMS, Laboratory of Plant Physiology, University of Liège, Sart Tilman Campus Quartier Vallée 1, Chemin de la Vallée 4, B-4000, Liège, Belgium
| | - Jean Dumont
- UT2A, Hélioparc Pau Pyrénées, 2, avenue du président Angot, 64053 Pau, France
| | - Céline Masclaux-Daubresse
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, 78000, Versailles, France
| | - Sébastien Thomine
- Institut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
- Correspondence:
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60
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Fan L, Wang G, Hu W, Pantha P, Tran KN, Zhang H, An L, Dassanayake M, Qiu QS. Transcriptomic view of survival during early seedling growth of the extremophyte Haloxylon ammodendron. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 132:475-489. [PMID: 30292980 DOI: 10.1016/j.plaphy.2018.09.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Revised: 09/08/2018] [Accepted: 09/18/2018] [Indexed: 05/27/2023]
Abstract
Seedling establishment in an extreme environment requires an integrated genomic and physiological response to survive multiple abiotic stresses. The extremophyte, Haloxylon ammodendron is a pioneer species capable of colonizing temperate desert sand dunes. We investigated the induced and basal transcriptomes in H. ammodendron under water-deficit stress during early seedling establishment. We find that not only drought-responsive genes, but multiple genes in pathways associated with salt, osmotic, cold, UV, and high-light stresses were induced, suggesting an altered regulatory stress response system. Additionally, H. ammodendron exhibited enhanced biotic stress tolerance by down-regulation of genes that were generally up-regulated during pathogen entry in susceptible plants. By comparing the H. ammodendron basal transcriptome to six closely related transcriptomes in Amaranthaceae, we detected enriched basal level transcripts in H. ammodendron that shows preadaptation to abiotic stress and pathogens. We found transcripts that were generally maintained at low levels and some induced only under abiotic stress in the stress-sensitive model, Arabidopsis thaliana to be highly expressed under basal conditions in the Amaranthaceae transcriptomes including H. ammodendron. H. ammodendron shows coordinated expression of genes that regulate stress tolerance and seedling development resource allocation to support survival against multiple stresses in a sand dune dominated temperate desert environment.
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Affiliation(s)
- Ligang Fan
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Guannan Wang
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Wei Hu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Pramod Pantha
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Kieu-Nga Tran
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA
| | - Hua Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Lizhe An
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China
| | - Maheshi Dassanayake
- Department of Biological Sciences, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA, 70803, USA.
| | - Quan-Sheng Qiu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, 222 South Tianshui Road, Lanzhou, Gansu, 730000, China.
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61
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Zhai L, Sun C, Feng Y, Li D, Chai X, Wang L, Sun Q, Zhang G, Li Y, Wu T, Zhang X, Xu X, Wang Y, Han Z. At
ROP
6
is involved in reactive oxygen species signaling in response to iron‐deficiency stress in
Arabidopsis thaliana. FEBS Lett 2018; 592:3446-3459. [DOI: 10.1002/1873-3468.13257] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 08/25/2018] [Accepted: 09/01/2018] [Indexed: 01/01/2023]
Affiliation(s)
- Longmei Zhai
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Chaohua Sun
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Feng
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Duyue Li
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xiaofen Chai
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Lei Wang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Qiran Sun
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Guifen Zhang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Li
- Department of Plant Science and Landscape Architecture University of Connecticut Storrs CT USA
| | - Ting Wu
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xinzhong Zhang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xuefeng Xu
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Wang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Zhenhai Han
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
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Gudiño ME, Blanco-Touriñán N, Arbona V, Gómez-Cadenas A, Blázquez MA, Navarro-García F. β-Lactam Antibiotics Modify Root Architecture and Indole Glucosinolate Metabolism in Arabidopsis thaliana. PLANT & CELL PHYSIOLOGY 2018; 59:2086-2098. [PMID: 29986082 DOI: 10.1093/pcp/pcy128] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 07/03/2018] [Indexed: 06/08/2023]
Abstract
The presence of antibiotics in soils could be due to natural production by soil microorganisms or to the effect of anthropogenic activities. However, the impact of these compounds on plant physiology has not been thoroughly investigated. To evaluate the effect of β-lactam antibiotics (carbenicillin and penicillin) on the growth and development of Arabidopsis thaliana roots, plants were grown in the presence of different amounts and we found a reduction in root size, an increase in the size of root hairs as well as an abnormal position closer to the tip of the roots. Those phenomena were dependent on the accumulation of both antibiotics inside root tissues and also correlated with a decrease in size of the root apical meristem not related to an alteration in cell division but to a decrease in cell expansion. Using an RNA sequencing analysis, we detected an increase in the expression of genes related to the response to oxidative stress, which would explain the increase in the levels of endogenous reactive oxygen species found in the presence of those antibiotics. Moreover, some auxin-responsive genes were misregulated, especially an induction of CYP79B3, possibly explaining the increase in auxin levels in the presence of carbenicillin and the decrease in the amount of indole glucosinolates, involved in the control of fungal infections. Accordingly, penicillin-treated plants were hypersensitive to the endophyte fungus Colletotrichum tofieldiae. These results underscore the risks for plant growth of β-lactam antibiotics in agricultural soils, and suggest a possible function for these compounds as fungus-produced signaling molecules to modify plant behavior.
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Affiliation(s)
- Marco E Gudiño
- Instituto de Biología Molecular y Celular de Plantas 'Primo Yúfera', CSIC-Universidad Politécnica de Valencia, Valencia, Spain
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
| | - Noel Blanco-Touriñán
- Instituto de Biología Molecular y Celular de Plantas 'Primo Yúfera', CSIC-Universidad Politécnica de Valencia, Valencia, Spain
| | - Vicent Arbona
- Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, Castelló, Spain
| | - Aurelio Gómez-Cadenas
- Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, Castelló, Spain
| | - Miguel A Blázquez
- Instituto de Biología Molecular y Celular de Plantas 'Primo Yúfera', CSIC-Universidad Politécnica de Valencia, Valencia, Spain
| | - Federico Navarro-García
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
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63
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Gutiérrez-Alanís D, Ojeda-Rivera JO, Yong-Villalobos L, Cárdenas-Torres L, Herrera-Estrella L. Adaptation to Phosphate Scarcity: Tips from Arabidopsis Roots. TRENDS IN PLANT SCIENCE 2018; 23:721-730. [PMID: 29764728 DOI: 10.1016/j.tplants.2018.04.006] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 04/13/2018] [Accepted: 04/20/2018] [Indexed: 05/21/2023]
Abstract
Phosphorus (P) availability is a limiting factor for plant growth and development. Root tip contact with low Pi media triggers diverse changes in the root architecture of Arabidopsis thaliana. The most conspicuous among these modifications is the inhibition of root growth, which is triggered by a shift from an indeterminate to a determinate root growth program. This phenomenon takes place in the root tip and involves a reduction in cell elongation, a decrease in cell proliferation, and the induction of premature cell differentiation, resulting in meristem exhaustion. Here, we review recent findings in the root response of A. thaliana to low Pi availability and discuss the cellular and genetic basis of the inhibition of root growth in Pi-deprived seedlings.
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Affiliation(s)
- Dolores Gutiérrez-Alanís
- Metabolic Engineering Group, Unidad de Genómica Avanzada, Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO) del Centro de Investigación y Estudios Avanzados, Km. 9.6 Libramiento Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México; These authors contributed equally to this manuscript
| | - Jonathan Odilón Ojeda-Rivera
- Metabolic Engineering Group, Unidad de Genómica Avanzada, Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO) del Centro de Investigación y Estudios Avanzados, Km. 9.6 Libramiento Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México; These authors contributed equally to this manuscript
| | - Lenin Yong-Villalobos
- Metabolic Engineering Group, Unidad de Genómica Avanzada, Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO) del Centro de Investigación y Estudios Avanzados, Km. 9.6 Libramiento Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México
| | - Luis Cárdenas-Torres
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apartado Postal 510-3, Cuernavaca, 62250, Morelos, México
| | - Luis Herrera-Estrella
- Metabolic Engineering Group, Unidad de Genómica Avanzada, Laboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO) del Centro de Investigación y Estudios Avanzados, Km. 9.6 Libramiento Norte Carr. Irapuato-León, 36821, Irapuato, Guanajuato, México.
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64
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Zhang L, Li G, Wang M, Di D, Sun L, Kronzucker HJ, Shi W. Excess iron stress reduces root tip zone growth through nitric oxide-mediated repression of potassium homeostasis in Arabidopsis. THE NEW PHYTOLOGIST 2018; 219:259-274. [PMID: 29658100 DOI: 10.1111/nph.15157] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 03/09/2018] [Indexed: 05/08/2023]
Abstract
The root tip zone is regarded as the principal action site for iron (Fe) toxicity and is more sensitive than other root zones, but the mechanism underpinning this remains largely unknown. We explored the mechanism underpinning the higher sensitivity at the Arabidopsis root tip and elucidated the role of nitric oxide (NO) using NO-related mutants and pharmacological methods. Higher Fe sensitivity of the root tip is associated with reduced potassium (K+ ) retention. NO in root tips is increased significantly above levels elsewhere in the root and is involved in the arrest of primary root tip zone growth under excess Fe, at least in part related to NO-induced K+ loss via SNO1 (sensitive to nitric oxide 1)/SOS4 (salt overly sensitive 4) and reduced root tip zone cell viability. Moreover, ethylene can antagonize excess Fe-inhibited root growth and K+ efflux, in part by the control of root tip NO levels. We conclude that excess Fe attenuates root growth by effecting an increase in root tip zone NO, and that this attenuation is related to NO-mediated alterations in K+ homeostasis, partly via SNO1/SOS4.
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Affiliation(s)
- Lin Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
- University of the Chinese Academy of Sciences, No. 19(A) Yuquan Road, Shijingshan District, Beijing, 100049, China
| | - Guangjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
| | - Meng Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
| | - Dongwei Di
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
| | - Li Sun
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
| | - Herbert J Kronzucker
- School of BioSciences, The University of Melbourne, Parkville, Vic., 3010, Australia
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing, 210008, China
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65
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Lim SD, Yim WC, Liu D, Hu R, Yang X, Cushman JC. A Vitis vinifera basic helix-loop-helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:1595-1615. [PMID: 29520945 PMCID: PMC6096725 DOI: 10.1111/pbi.12898] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 01/22/2018] [Indexed: 05/03/2023]
Abstract
Strategies for improving plant size are critical targets for plant biotechnology to increase vegetative biomass or reproductive yield. To improve biomass production, a codon-optimized helix-loop-helix transcription factor (VvCEB1opt ) from wine grape was overexpressed in Arabidopsis thaliana resulting in significantly increased leaf number, leaf and rosette area, fresh weight and dry weight. Cell size, but typically not cell number, was increased in all tissues resulting in increased vegetative biomass and reproductive organ size, number and seed yield. Ionomic analysis of leaves revealed the VvCEB1opt -overexpressing plants had significantly elevated, K, S and Mo contents relative to control lines. Increased K content likely drives increased osmotic potential within cells leading to greater cellular growth and expansion. To understand the mechanistic basis of VvCEB1opt action, one transgenic line was genotyped using RNA-Seq mRNA expression profiling and revealed a novel transcriptional reprogramming network with significant changes in mRNA abundance for genes with functions in delayed flowering, pathogen-defence responses, iron homeostasis, vesicle-mediated cell wall formation and auxin-mediated signalling and responses. Direct testing of VvCEB1opt -overexpressing plants showed that they had significantly elevated auxin content and a significantly increased number of lateral leaf primordia within meristems relative to controls, confirming that cell expansion and organ number proliferation were likely an auxin-mediated process. VvCEB1opt overexpression in Nicotiana sylvestris also showed larger cells, organ size and biomass demonstrating the potential applicability of this innovative strategy for improving plant biomass and reproductive yield in crops.
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Affiliation(s)
- Sung Don Lim
- Department of Biochemistry and Molecular BiologyUniversity of Nevada, RenoRenoNVUSA
| | - Won Choel Yim
- Department of Biochemistry and Molecular BiologyUniversity of Nevada, RenoRenoNVUSA
| | - Degao Liu
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTNUSA
| | - Rongbin Hu
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTNUSA
| | - Xiaohan Yang
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTNUSA
| | - John C. Cushman
- Department of Biochemistry and Molecular BiologyUniversity of Nevada, RenoRenoNVUSA
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Liu J, Fan Y, Zou J, Fang Y, Wang L, Wang M, Jiang X, Liu Y, Gao J, Zhang C. A RhABF2/Ferritin module affects rose (Rosa hybrida) petal dehydration tolerance and senescence by modulating iron levels. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 92:1157-1169. [PMID: 29072877 DOI: 10.1111/tpj.13751] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 10/10/2017] [Accepted: 10/17/2017] [Indexed: 05/27/2023]
Abstract
Plants often develop the capacity to tolerate moderate and reversible environmental stresses, such as drought, and to re-establish normal development once the stress has been removed. An example of this phenomenon is provided by cut rose (Rosa hybrida) flowers, which experience typical reversible dehydration stresses during post-harvest handling after harvesting at the bud stages. The molecular mechanisms involved in rose flower dehydration tolerance are not known, however. Here, we characterized a dehydration- and abscisic acid (ABA)-induced ferritin gene (RhFer1). Dehydration-induced free ferrous iron (Fe2+ ) is preferentially sequestered by RhFer1 and not transported outside of the petal cells, to restrict oxidative stresses during dehydration. Free Fe2+ accumulation resulted in more serious oxidative stresses and the induction of genes encoding antioxidant enzyme in RhFer1-silenced petals, and poorer dehydration tolerance was observed compared with tobacco rattle virus (TRV) controls. We also determined that RhABF2, an AREB/ABF transcription factor involved in the ABA signaling pathway, can activate RhFer1 expression by directly binding to its promoter. The silencing of RhABF2 decreased dehydration tolerance and disrupted Fe homeostasis in rose petals during dehydration, as did the silencing of RhFer1. Although both RhFer1 and Fe transporter genes are induced during flower natural senescence in plants, the silencing of RhABF2 or RhFer1 accelerates the petal senescence processes. These results suggest that the regulatory module RhABF2/RhFer1 contributes to the maintenance of Fe levels and enhances dehydration tolerance through the action of RhFer1 locally sequestering free Fe2+ under dehydration conditions, and plays synergistic roles with transporter genes during flower senescence.
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Affiliation(s)
- Jitao Liu
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Youwei Fan
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Jing Zou
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Yiqun Fang
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Linghao Wang
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Meng Wang
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Xinqiang Jiang
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Yiqing Liu
- Collabrative Innovation Center of Special Plant Industry in Chongqing, Chongqing University of Arts and Sciences, Yongchuan, 402160, China
| | - Junping Gao
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
| | - Changqing Zhang
- Department of Ornamental Horticulture, China Agricultural University, Beijing, 100193, China
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67
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da Silva LC, de Araújo TO, Siqueira-Silva AI, Pereira TAR, Castro LN, Silva EC, Oliva MA, Azevedo AA. Clusia hilariana and Eugenia uniflora as bioindicators of atmospheric pollutants emitted by an iron pelletizing factory in Brazil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:28026-28035. [PMID: 28994038 DOI: 10.1007/s11356-017-0386-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 10/02/2017] [Indexed: 06/07/2023]
Abstract
The objectives of this work were to evaluate if the pollution emitted by the pelletizing factory causes visual symptoms and/or anatomical changes in exposed Eugenia uniflora and Clusia hilariana, in active biomonitoring, at different distances from a pelletizing factory. We characterize the symptomatology, anatomical, and histochemistry alterations induced in the two species. There was no difference in the symptomatology in relation to the different distances of the emitting source. The foliar symptoms found in C. hilariana were chlorosis, necrosis, and foliar abscission and, in E. uniflora, were observed necrosis punctuais, purple spots in the leaves, and increase in the emission of new leaves completely purplish. The two species presented formation of a cicatrization tissue. E. uniflora presented reduction in the thickness of leaf. In C. hilariana, it was visualized hyperplasia of the cells and the adaxial epidermis did not appear collapsed due to thick cuticle and cuticular flanges. Leaves of C. hilariana showed positive staining for iron, protein, starch, and phenolic compounds. E. uniflora showed positive staining for total phenolic compounds and starch. Micromorphologically, there was accumulation of particulate matter on the leaf surface, obstruction of the stomata, and scaling of the epicuticular wax in both species. It was concluded that the visual and anatomical symptoms were efficient in the diagnosis of the stress factor. C. hilariana and E. uniflora showed to be good bioindicators of the atmospheric pollutants emitted by the pelletizing factory.
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Affiliation(s)
- Luzimar Campos da Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil.
| | - Talita Oliveira de Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | | | | | - Letícia Nalon Castro
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | - Eduardo Chagas Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | - Marco Antonio Oliva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
| | - Aristéa Alves Azevedo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, Minas Gerais, 36570-900, Brasil
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68
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Abel S. Phosphate scouting by root tips. CURRENT OPINION IN PLANT BIOLOGY 2017; 39:168-177. [PMID: 28527590 DOI: 10.1016/j.pbi.2017.04.016] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Revised: 04/12/2017] [Accepted: 04/22/2017] [Indexed: 05/21/2023]
Abstract
Chemistry assigns phosphate (Pi) dominant roles in metabolism; however, it also renders the macronutrient a genuinely limiting factor of plant productivity. Pi bioavailability is restricted by low Pi mobility in soil and antagonized by metallic toxicities, which force roots to actively seek and selectively acquire the vital element. During the past few years, a first conceptual outline has emerged of the sensory mechanisms at root tips, which monitor external Pi and transmit the edaphic cue to inform root development. This review highlights new aspects of the Pi acquisition strategy of Arabidopsis roots, as well as a framework of local Pi sensing in the context of antagonistic interactions between Pi and its major associated metallic cations, Fe3+ and Al3+.
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Affiliation(s)
- Steffen Abel
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, 06120 Halle, Germany; Department of Plant Sciences, University of California, Davis, CA 95616, USA.
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69
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Jeong J, Merkovich A, Clyne M, Connolly EL. Directing iron transport in dicots: regulation of iron acquisition and translocation. CURRENT OPINION IN PLANT BIOLOGY 2017; 39:106-113. [PMID: 28689052 DOI: 10.1016/j.pbi.2017.06.014] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Revised: 06/15/2017] [Accepted: 06/19/2017] [Indexed: 05/03/2023]
Abstract
Iron is essential for plant growth and development, but excess iron is cytotoxic. While iron is abundant in soil, it is often a limiting nutrient for plant growth. Consequentially, plants have evolved mechanisms to tightly regulate iron uptake, trafficking and storage. Recent work has contributed to a more comprehensive picture of iron uptake, further elucidating molecular and physiological processes that aid in solubilization of iron and modulation of the root system architecture in response to iron availability. Recent progress in understanding the regulators of the iron deficiency response and iron translocation from root to shoots, and especially to seeds are noteworthy. The molecular bases of iron sensing and signaling are gradually emerging, as well.
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Affiliation(s)
- Jeeyon Jeong
- Department of Biology, Amherst College, Amherst, MA 01002, United States
| | - Aleks Merkovich
- Department of Biology, Amherst College, Amherst, MA 01002, United States
| | - Madeline Clyne
- Department of Biology, Amherst College, Amherst, MA 01002, United States
| | - Erin L Connolly
- Department of Plant Science, Penn State University, University Park, PA 16802, United States.
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70
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Boamponsem GA, Leung DWM, Lister C. Insights into Resistance to Fe Deficiency Stress from a Comparative Study of In Vitro-Selected Novel Fe-Efficient and Fe-Inefficient Potato Plants. FRONTIERS IN PLANT SCIENCE 2017; 8:1581. [PMID: 28955367 PMCID: PMC5601415 DOI: 10.3389/fpls.2017.01581] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Accepted: 08/29/2017] [Indexed: 05/29/2023]
Abstract
Iron (Fe) deficiency induces chlorosis (IDC) in plants and can result in reduced plant productivity. Therefore, development of Fe-efficient plants is of great interest. To gain a better understanding of the physiology of Fe-efficient plants, putative novel plant variants were regenerated from potato (Solanum tubersosum L. var. 'Iwa') callus cultures selected under Fe deficient or low Fe supply (0-5 μM Fe). Based on visual chlorosis rating (VCR), 23% of callus-derived regenerants were classified as Fe-efficient (EF) and 77% as Fe-inefficient (IFN) plant lines when they were grown under Fe deficiency conditions. Stem height was found to be highly correlated with internodal distance, leaf and root lengths in the EF plant lines grown under Fe deficiency conditions. In addition, compared to the IFN plant lines and control parental biotype, the EF plants including the lines named A1, B2, and B9, exhibited enhanced formation of lateral roots and root hairs as well as increased expression of ferritin (fer3) in the leaf and iron-regulated transporter (irt1) in the root. These morphological adaptations and changes in expression the fer3 and irt1 genes of the selected EF potato lines suggest that they are associated with resistance to low Fe supply stress.
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Affiliation(s)
| | - David W. M. Leung
- School of Biological Sciences, University of CanterburyChristchurch, New Zealand
| | - Carolyn Lister
- The New Zealand Institute for Plant and Food Research Limited, Canterbury Agriculture and Science CentreLincoln, New Zealand
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71
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Naranjo-Arcos MA, Maurer F, Meiser J, Pateyron S, Fink-Straube C, Bauer P. Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein. Sci Rep 2017; 7:10911. [PMID: 28883478 PMCID: PMC5589837 DOI: 10.1038/s41598-017-11171-7] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Accepted: 05/25/2017] [Indexed: 11/09/2022] Open
Abstract
Iron is an essential growth determinant for plants, and plants acquire this micronutrient in amounts they need in their environment. Plants can increase iron uptake in response to a regulatory transcription factor cascade. Arabidopsis thaliana serves as model plant to identify and characterize iron regulation genes. Here, we show that overexpression of subgroup Ib bHLH transcription factor bHLH039 (39Ox) caused constitutive iron acquisition responses, which resulted in enhanced iron contents in leaves and seeds. Transcriptome analysis demonstrated that 39Ox plants displayed simultaneously gene expression patterns characteristic of iron deficiency and iron stress signaling. Thereby, we could dissect iron deficiency response regulation. The transcription factor FIT, which is required to regulate iron uptake, was essential for the 39Ox phenotype. We provide evidence that subgroup Ib transcription factors are involved in FIT transcriptional regulation. Our findings pose interesting questions to the feedback control of iron homeostasis.
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Affiliation(s)
- Maria Augusta Naranjo-Arcos
- Institute of Botany, Heinrich-Heine University, D-40225, Düsseldorf, Germany.,Department of Biosciences-Plant Biology, Saarland University, D-66123, Saarbrücken, Germany
| | - Felix Maurer
- Department of Biosciences-Plant Biology, Saarland University, D-66123, Saarbrücken, Germany
| | - Johannes Meiser
- Department of Biosciences-Plant Biology, Saarland University, D-66123, Saarbrücken, Germany
| | - Stephanie Pateyron
- Transcriptomic Platform, Institute of Plant Sciences - Paris-Saclay, Plateau du Moulon, 91190, Gif-sur-Yvette, France
| | - Claudia Fink-Straube
- Leibniz Institute for New Materials gGmbH, Campus D2.2, 66123, Saarbrücken, Germany
| | - Petra Bauer
- Institute of Botany, Heinrich-Heine University, D-40225, Düsseldorf, Germany. .,Department of Biosciences-Plant Biology, Saarland University, D-66123, Saarbrücken, Germany. .,Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine University, D-40225, Düsseldorf, Germany.
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72
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Variable Cell Growth Yields Reproducible OrganDevelopment through Spatiotemporal Averaging. Dev Cell 2017; 38:15-32. [PMID: 27404356 DOI: 10.1016/j.devcel.2016.06.016] [Citation(s) in RCA: 112] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 05/04/2016] [Accepted: 06/09/2016] [Indexed: 11/22/2022]
Abstract
Organ sizes and shapes are strikingly reproducible, despite the variable growth and division of individual cells within them. To reveal which mechanisms enable this precision, we designed a screen for disrupted sepal size and shape uniformity in Arabidopsis and identified mutations in the mitochondrial i-AAA protease FtsH4. Counterintuitively, through live imaging we observed that variability of neighboring cell growth was reduced in ftsh4 sepals. We found that regular organ shape results from spatiotemporal averaging of the cellular variability in wild-type sepals, which is disrupted in the less-variable cells of ftsh4 mutants. We also found that abnormal, increased accumulation of reactive oxygen species (ROS) in ftsh4 mutants disrupts organ size consistency. In wild-type sepals, ROS accumulate in maturing cells and limit organ growth, suggesting that ROS are endogenous signals promoting termination of growth. Our results demonstrate that spatiotemporal averaging of cellular variability is required for precision in organ size.
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73
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Fernández-Marcos M, Desvoyes B, Manzano C, Liberman LM, Benfey PN, del Pozo JC, Gutierrez C. Control of Arabidopsis lateral root primordium boundaries by MYB36. THE NEW PHYTOLOGIST 2017; 213:105-112. [PMID: 27891649 PMCID: PMC5126979 DOI: 10.1111/nph.14304] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2016] [Accepted: 09/29/2016] [Indexed: 05/20/2023]
Abstract
Root branching in plants relies on the de novo formation of lateral roots. These are initiated from founder cells, triggering new formative divisions that generate lateral root primordia (LRP). The LRP size and shape depends on the balance between positive and negative signals that control cell proliferation. The mechanisms controlling proliferation potential of LRP cells remains poorly understood. We found that Arabidopsis thaliana MYB36, which have been previously shown to regulate genes required for Casparian strip formation and the transition from proliferation to differentiation in the primary root, plays a new role in controlling LRP development at later stages. We found that MYB36 is a novel component of LR development at later stages. MYB36 was expressed in the cells surrounding LRP where it controls a set of peroxidase genes, which maintain reactive oxygen species (ROS) balance. This was required to define the transition between proliferating and arrested cells inside the LRP, coinciding with the change from flat to dome-shaped primordia. Reducing the levels of hydrogen peroxide (H2 O2 ) in myb36-5 significantly rescues the mutant phenotype. Our results uncover a role for MYB36 outside the endodermis during LRP development through a mechanism analogous to regulating the proliferation/differentiation transition in the root meristem.
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Affiliation(s)
- María Fernández-Marcos
- Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolas Cabrera 1, 28049 Madrid, Spain
| | - Bénédicte Desvoyes
- Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolas Cabrera 1, 28049 Madrid, Spain
| | - Concepción Manzano
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Louisa M. Liberman
- Howard Hughes Medical Institute and Department of Biology, Duke University, Durham, NC 27708, USA
| | - Philip N. Benfey
- Howard Hughes Medical Institute and Department of Biology, Duke University, Durham, NC 27708, USA
| | - Juan C. del Pozo
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Crisanto Gutierrez
- Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolas Cabrera 1, 28049 Madrid, Spain
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Sun C, Wu T, Zhai L, Li D, Zhang X, Xu X, Ma H, Wang Y, Han Z. Reactive Oxygen Species Function to Mediate the Fe Deficiency Response in an Fe-Efficient Apple Genotype: An Early Response Mechanism for Enhancing Reactive Oxygen Production. FRONTIERS IN PLANT SCIENCE 2016; 7:1726. [PMID: 27899933 PMCID: PMC5110569 DOI: 10.3389/fpls.2016.01726] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2016] [Accepted: 11/02/2016] [Indexed: 05/09/2023]
Abstract
Reactive oxygen species (ROS) are important signaling molecules in plants that contribute to stress acclimation. This study demonstrated that ROS play a critical role in Fe deficiency-induced signaling at an early stage in Malus xiaojinensis. Once ROS production has been initiated, prolonged Fe starvation leads to activation of ROS scavenging mechanisms. Further, we demonstrated that ROS scavengers are involved in maintaining the cellular redox homeostasis during prolonged Fe deficiency treatment. Taken together, our results describe a feedback repression loop for ROS to preserve redox homeostasis and maintain a continuous Fe deficiency response in the Fe-efficient woody plant M. xiaojinensis. More broadly, this study reveals a new mechanism in which ROS mediate both positive and negative regulation of plant responses to Fe deficiency stress.
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Affiliation(s)
- Chaohua Sun
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Ting Wu
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Longmei Zhai
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Duyue Li
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Xinzhong Zhang
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Xuefeng Xu
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
- Beijing Collaborative Innovation Center for Eco-environmental Improvement with Forestry and Fruit Trees, China Agricultural UniversityBeijing, China
| | - Huiqin Ma
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
| | - Yi Wang
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
| | - Zhenhai Han
- Institute for Horticultural Plants, College of Horticulture, China Agricultural UniversityBeijing, China
- Key Laboratory of Physiology and Molecular Biology of Tree Fruit of Beijing, China Agricultural UniversityBeijing, China
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75
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Leaden L, Pagani MA, Balparda M, Busi MV, Gomez-Casati DF. Altered levels of AtHSCB disrupts iron translocation from roots to shoots. PLANT MOLECULAR BIOLOGY 2016; 92:613-628. [PMID: 27655366 DOI: 10.1007/s11103-016-0537-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2015] [Accepted: 08/29/2016] [Indexed: 05/26/2023]
Abstract
Plants overexpressing AtHSCB and hscb knockdown mutants showed altered iron homeostasis. The overexpression of AtHSCB led to activation of the iron uptake system and iron accumulation in roots without concomitant transport to shoots, resulting in reduced iron content in the aerial parts of plants. By contrast, hscb knockdown mutants presented the opposite phenotype, with iron accumulation in shoots despite the reduced levels of iron uptake in roots. AtHSCB play a key role in iron metabolism, probably taking part in the control of iron translocation from roots to shoots. Many aspects of plant iron metabolism remain obscure. The most known and studied homeostatic mechanism is the control of iron uptake in the roots by shoots. Nevertheless, this mechanism likely involves various unknown sensors and unidentified signals sent from one tissue to another which need to be identified. Here, we characterized Arabidopsis thaliana plants overexpressing AtHSCB, encoding a mitochondrial cochaperone involved in [Fe-S] cluster biosynthesis, and hscb knockdown mutants, which exhibit altered shoot/root Fe partitioning. Overexpression of AtHSCB induced an increase in root iron uptake and content along with iron deficiency in shoots. Conversely, hscb knockdown mutants exhibited increased iron accumulation in shoots and reduced iron uptake in roots. Different experiments, including foliar iron application, citrate supplementation and iron deficiency treatment, indicate that the shoot-directed control of iron uptake in roots functions properly in these lines, implying that [Fe-S] clusters are not involved in this regulatory mechanism. The most likely explanation is that both lines have altered Fe transport from roots to shoots. This could be consistent with a defect in a homeostatic mechanism operating at the root-to-shoot translocation level, which would be independent of the shoot control over root iron deficiency responses. In summary, the phenotypes of these plants indicate that AtHSCB plays a role in iron metabolism.
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Affiliation(s)
- Laura Leaden
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), CONICET-Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Argentina
- Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, Av. Prof. Lineu Prestes 1374, São Paulo, 05508-900, Brazil
| | - María A Pagani
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), CONICET-Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Argentina.
| | - Manuel Balparda
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), CONICET-Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Argentina
| | - María V Busi
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), CONICET-Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Argentina
| | - Diego F Gomez-Casati
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), CONICET-Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Argentina.
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Parveen S, Gupta DB, Dass S, Kumar A, Pandey A, Chakraborty S, Chakraborty N. Chickpea Ferritin CaFer1 Participates in Oxidative Stress Response, and Promotes Growth and Development. Sci Rep 2016; 6:31218. [PMID: 27503257 PMCID: PMC4977498 DOI: 10.1038/srep31218] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 07/14/2016] [Indexed: 11/25/2022] Open
Abstract
Ferritins store and sequester iron, and regulate iron homeostasis. The cDNA for a stress-responsive phytoferritin, previously identified in the extracellular matrix (ECM) of chickpea (Cicer arietinum), was cloned and designated CaFer1. The CaFer1 transcript was strongly induced in chickpea exposed to dehydration, hypersalinity and ABA treatment. Additionally, it has role in the defense against Fusarium oxysporum infection. Functional complementation of the yeast frataxin-deficient mutant, Δyfh1, indicates that CaFer1 functions in oxidative stress. The presence of CaFer1 in the extracellular space besides chloroplast establishes its inimitable nature from that of other phytoferritins. Furthermore, CaFer1 expression in response to iron suggests its differential mechanism of accumulation at two different iron conditions. CaFer1-overexpressing transgenic plants conferred improved growth and development, accompanied by altered expression of iron-responsive genes. Together, these results suggest that the phytoferritin, CaFer1, might play a key role in maintenance of iron buffering and adaptation to environmental challenges.
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Affiliation(s)
- Shaista Parveen
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | | | - Suchismita Dass
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Amit Kumar
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Aarti Pandey
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Subhra Chakraborty
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
| | - Niranjan Chakraborty
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India
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77
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Hoehenwarter W, Mönchgesang S, Neumann S, Majovsky P, Abel S, Müller J. Comparative expression profiling reveals a role of the root apoplast in local phosphate response. BMC PLANT BIOLOGY 2016; 16:106. [PMID: 27121119 PMCID: PMC4849097 DOI: 10.1186/s12870-016-0790-8] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 04/18/2016] [Indexed: 05/03/2023]
Abstract
BACKGROUND Plant adaptation to limited phosphate availability comprises a wide range of responses to conserve and remobilize internal phosphate sources and to enhance phosphate acquisition. Vigorous restructuring of root system architecture provides a developmental strategy for topsoil exploration and phosphate scavenging. Changes in external phosphate availability are locally sensed at root tips and adjust root growth by modulating cell expansion and cell division. The functionally interacting Arabidopsis genes, LOW PHOSPHATE RESPONSE 1 and 2 (LPR1/LPR2) and PHOSPHATE DEFICIENCY RESPONSE 2 (PDR2), are key components of root phosphate sensing. We recently demonstrated that the LOW PHOSPHATE RESPONSE 1 - PHOSPHATE DEFICIENCY RESPONSE 2 (LPR1-PDR2) module mediates apoplastic deposition of ferric iron (Fe(3+)) in the growing root tip during phosphate limitation. Iron deposition coincides with sites of reactive oxygen species generation and triggers cell wall thickening and callose accumulation, which interfere with cell-to-cell communication and inhibit root growth. RESULTS We took advantage of the opposite phosphate-conditional root phenotype of the phosphate deficiency response 2 mutant (hypersensitive) and low phosphate response 1 and 2 double mutant (insensitive) to investigate the phosphate dependent regulation of gene and protein expression in roots using genome-wide transcriptome and proteome analysis. We observed an overrepresentation of genes and proteins that are involved in the regulation of iron homeostasis, cell wall remodeling and reactive oxygen species formation, and we highlight a number of candidate genes with a potential function in root adaptation to limited phosphate availability. Our experiments reveal that FERRIC REDUCTASE DEFECTIVE 3 mediated, apoplastic iron redistribution, but not intracellular iron uptake and iron storage, triggers phosphate-dependent root growth modulation. We further highlight expressional changes of several cell wall-modifying enzymes and provide evidence for adjustment of the pectin network at sites of iron accumulation in the root. CONCLUSION Our study reveals new aspects of the elaborate interplay between phosphate starvation responses and changes in iron homeostasis. The results emphasize the importance of apoplastic iron redistribution to mediate phosphate-dependent root growth adjustment and suggest an important role for citrate in phosphate-dependent apoplastic iron transport. We further demonstrate that root growth modulation correlates with an altered expression of cell wall modifying enzymes and changes in the pectin network of the phosphate-deprived root tip, supporting the hypothesis that pectins are involved in iron binding and/or phosphate mobilization.
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Affiliation(s)
- Wolfgang Hoehenwarter
- Proteome Analytics Research Group, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Susann Mönchgesang
- Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Steffen Neumann
- Department of Stress and Developmental Biology, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Petra Majovsky
- Proteome Analytics Research Group, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
| | - Steffen Abel
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany
- Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, D-06120, Halle (Saale), Germany
- Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA
| | - Jens Müller
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, D-06120, Halle (Saale), Germany.
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78
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Li G, Kronzucker HJ, Shi W. The Response of the Root Apex in Plant Adaptation to Iron Heterogeneity in Soil. FRONTIERS IN PLANT SCIENCE 2016; 7:344. [PMID: 27047521 PMCID: PMC4800179 DOI: 10.3389/fpls.2016.00344] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Accepted: 03/07/2016] [Indexed: 05/30/2023]
Abstract
Iron (Fe) is an essential micronutrient for plant growth and development, and is frequently limiting. By contrast, over-accumulation of Fe in plant tissues leads to toxicity. In soils, the distribution of Fe is highly heterogeneous. To cope with this heterogeneity, plant roots engage an array of adaptive responses to adjust their morphology and physiology. In this article, we review root morphological and physiological changes in response to low- and high-Fe conditions and highlight differences between these responses. We especially focus on the role of the root apex in dealing with the stresses resulting from Fe shortage and excess.
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Affiliation(s)
- Guangjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of SciencesNanjing, China
| | | | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of SciencesNanjing, China
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79
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Tsukagoshi H. Control of root growth and development by reactive oxygen species. CURRENT OPINION IN PLANT BIOLOGY 2016; 29:57-63. [PMID: 26724502 DOI: 10.1016/j.pbi.2015.10.012] [Citation(s) in RCA: 107] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2015] [Revised: 10/19/2015] [Accepted: 10/26/2015] [Indexed: 05/03/2023]
Abstract
Reactive oxygen species (ROS) are relatively simple molecules that exist within cells growing in aerobic conditions. ROS were originally associated with oxidative stress and seen as highly reactive molecules that are injurious to many cell components. More recently, however, the function of ROS as signal molecules in many plant cellular processes has become more evident. One of the most important functions of ROS is their role as a plant growth regulator. For example, ROS are key molecules in regulating plant root development, and as such, are comparable to plant hormones. In this review, the molecular mechanisms of ROS that are mainly associated with plant root growth are discussed. The molecular links between root growth regulation by ROS and other signals will also be briefly discussed.
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Affiliation(s)
- Hironaka Tsukagoshi
- The Center for Gene Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan; Program for Leading Graduate Schools, PhD Professional: Gateway to Success in Frontier Asia, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602 Aichi, Japan; Japan Science and Technology Agency, PRESTO, 4-1-8 Honcho Kawaguchi, Saitama 332-0012, Japan.
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80
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Li G, Kronzucker HJ, Shi W. Root developmental adaptation to Fe toxicity: Mechanisms and management. PLANT SIGNALING & BEHAVIOR 2016; 11:e1117722. [PMID: 26619064 PMCID: PMC4871668 DOI: 10.1080/15592324.2015.1117722] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Iron (Fe) is an essential microelement but is highly toxic when in excess. To cope with Fe excess, plants have evolved complex adaptive responses that include morphological and physiological modifications. The highly dynamic adjustments in overall root system architecture (RSA) determine root plasticity and allow plants to efficiently adapt to environmental constraints. However, the effects of Fe excess on RSA are poorly understood. Recently, we showed that excess Fe treatment in Arabidopsis not only directly impairs primary root (PR) growth but also arrests lateral root (LR) formation by acting at the tip of the growing primary root. Such a change is believed to help RSA adjust and restrict excessive Fe absorption in the part of the rhizosphere subject to acute toxicity while maintaining the absorption of other nutrients in the less stressed components of the root system. We further showed that the suppression of PR growth and LR formation under excess Fe is alleviated by K(+) addition, providing useful insight into the effectiveness of nutrient management to improve RSA and alleviate Fe toxicity symptoms in the field.
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Affiliation(s)
- Guangjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Herbert J. Kronzucker
- Department of Biological Sciences, University of Toronto, 1265 Military Trail, Toronto, Ontario, Canada
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
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81
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Ortiz-Gutiérrez E, García-Cruz K, Azpeitia E, Castillo A, Sánchez MDLP, Álvarez-Buylla ER. A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsis thaliana Cell Cycle. PLoS Comput Biol 2015; 11:e1004486. [PMID: 26340681 PMCID: PMC4560428 DOI: 10.1371/journal.pcbi.1004486] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Accepted: 08/03/2015] [Indexed: 01/02/2023] Open
Abstract
Cell cycle control is fundamental in eukaryotic development. Several modeling efforts have been used to integrate the complex network of interacting molecular components involved in cell cycle dynamics. In this paper, we aimed at recovering the regulatory logic upstream of previously known components of cell cycle control, with the aim of understanding the mechanisms underlying the emergence of the cyclic behavior of such components. We focus on Arabidopsis thaliana, but given that many components of cell cycle regulation are conserved among eukaryotes, when experimental data for this system was not available, we considered experimental results from yeast and animal systems. We are proposing a Boolean gene regulatory network (GRN) that converges into only one robust limit cycle attractor that closely resembles the cyclic behavior of the key cell-cycle molecular components and other regulators considered here. We validate the model by comparing our in silico configurations with data from loss- and gain-of-function mutants, where the endocyclic behavior also was recovered. Additionally, we approximate a continuous model and recovered the temporal periodic expression profiles of the cell-cycle molecular components involved, thus suggesting that the single limit cycle attractor recovered with the Boolean model is not an artifact of its discrete and synchronous nature, but rather an emergent consequence of the inherent characteristics of the regulatory logic proposed here. This dynamical model, hence provides a novel theoretical framework to address cell cycle regulation in plants, and it can also be used to propose novel predictions regarding cell cycle regulation in other eukaryotes. In multicellular organisms, cells undergo a cyclic behavior of DNA duplication and delivery of a copy to daughter cells during cell division. In each of the main cell-cycle (CC) stages different sets of proteins are active and genes are expressed. Understanding how such cycling cellular behavior emerges and is robustly maintained in the face of changing developmental and environmental conditions, remains a fundamental challenge of biology. The molecular components that cycle through DNA duplication and citokinesis are interconnected in a complex regulatory network. Several models of such network have been proposed, although the regulatory network that robustly recovers a limit-cycle steady state that resembles the behavior of CC molecular components has been recovered only in a few cases, and no comprehensive model exists for plants. In this paper we used the plant Arabidopsis thaliana, as a study system to propose a core regulatory network to recover a cyclic attractor that mimics the oscillatory behavior of the key CC components. Our analyses show that the proposed GRN model is robust to transient alterations, and is validated with the loss- and gain-of-function mutants of the CC components. The interactions proposed for Arabidopsis thaliana CC can inspire predictions for further uncovering regulatory motifs in the CC of other organisms including human.
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Affiliation(s)
- Elizabeth Ortiz-Gutiérrez
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México; Centro de Ciencias de la Complejidad-C3, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70-275, México, D.F. 04510, México
| | - Karla García-Cruz
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México
| | - Eugenio Azpeitia
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México; Centro de Ciencias de la Complejidad-C3, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70-275, México, D.F. 04510, México
| | - Aaron Castillo
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México; Centro de Ciencias de la Complejidad-C3, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70-275, México, D.F. 04510, México
| | - María de la Paz Sánchez
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México
| | - Elena R Álvarez-Buylla
- Instituto de Ecología, Universidad Nacional Autónoma de México, 3er Circuito Exterior, Junto a Jardín Botánico Exterior, México, D.F. CP 04510, México; Centro de Ciencias de la Complejidad-C3, Universidad Nacional Autónoma de México, Ciudad Universitaria, Apartado Postal 70-275, México, D.F. 04510, México
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