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Feng W, Lindner H, Robbins NE, Dinneny JR. Growing Out of Stress: The Role of Cell- and Organ-Scale Growth Control in Plant Water-Stress Responses. THE PLANT CELL 2016; 28:1769-82. [PMID: 27503468 PMCID: PMC5006702 DOI: 10.1105/tpc.16.00182] [Citation(s) in RCA: 90] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 07/20/2016] [Accepted: 08/07/2016] [Indexed: 05/20/2023]
Abstract
Water is the most limiting resource on land for plant growth, and its uptake by plants is affected by many abiotic stresses, such as salinity, cold, heat, and drought. While much research has focused on exploring the molecular mechanisms underlying the cellular signaling events governing water-stress responses, it is also important to consider the role organismal structure plays as a context for such responses. The regulation of growth in plants occurs at two spatial scales: the cell and the organ. In this review, we focus on how the regulation of growth at these different spatial scales enables plants to acclimate to water-deficit stress. The cell wall is discussed with respect to how the physical properties of this structure affect water loss and how regulatory mechanisms that affect wall extensibility maintain growth under water deficit. At a higher spatial scale, the architecture of the root system represents a highly dynamic physical network that facilitates access of the plant to a heterogeneous distribution of water in soil. We discuss the role differential growth plays in shaping the structure of this system and the physiological implications of such changes.
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Affiliation(s)
- Wei Feng
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305
| | - Heike Lindner
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305
| | - Neil E Robbins
- Department of Biology, Stanford University, Stanford, California 94305
| | - José R Dinneny
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305
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Rattanakan S, George I, Haynes PA, Cramer GR. Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid. HORTICULTURE RESEARCH 2016; 3:16029. [PMID: 27366326 PMCID: PMC4916266 DOI: 10.1038/hortres.2016.29] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Revised: 05/16/2016] [Accepted: 05/16/2016] [Indexed: 05/08/2023]
Abstract
In a previous transcriptomic analysis, abscisic acid (ABA) was found to affect the abundance of a number of transcripts in leaves of Cabernet Sauvignon grapevines with roots that had been exposed to 10 μm ABA for 2 h. Other work has indicated that ABA affects protein abundance and protein phosphorylation as well. In this study we investigated changes in protein abundance and phosphorylation of Cabernet Sauvignon grapevine leaves. Protein abundance was assessed by both label-free and isobaric-label quantitive proteomic methods. Each identified common proteins, but also additional proteins not found with the other method. Overall, several thousand proteins were identified and several hundred were quantified. In addition, hundreds of phosphoproteins were identified. Tens of proteins were found to be affected in the leaf after the roots had been exposed to ABA for 2 h, more than half of them were phosphorylated proteins. Many phosphosites were confirmed and several new ones were identified. ABA increased the abundance of some proteins, but the majority of the proteins had their protein abundance decreased. Many of these proteins were involved in growth and plant organ development, including proteins involved in protein synthesis, photosynthesis, sugar and amino-acid metabolism. This study provides new insights into how ABA regulates plant responses and acclimation to water deficits.
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Affiliation(s)
- Supakan Rattanakan
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, USA
| | - Iniga George
- Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Paul A Haynes
- Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Grant R Cramer
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, USA
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Sah SK, Reddy KR, Li J. Abscisic Acid and Abiotic Stress Tolerance in Crop Plants. FRONTIERS IN PLANT SCIENCE 2016; 7:571. [PMID: 27200044 DOI: 10.3389/fpls.2016.00571/bibtex] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 04/13/2016] [Indexed: 05/27/2023]
Abstract
Abiotic stress is a primary threat to fulfill the demand of agricultural production to feed the world in coming decades. Plants reduce growth and development process during stress conditions, which ultimately affect the yield. In stress conditions, plants develop various stress mechanism to face the magnitude of stress challenges, although that is not enough to protect them. Therefore, many strategies have been used to produce abiotic stress tolerance crop plants, among them, abscisic acid (ABA) phytohormone engineering could be one of the methods of choice. ABA is an isoprenoid phytohormone, which regulates various physiological processes ranging from stomatal opening to protein storage and provides adaptation to many stresses like drought, salt, and cold stresses. ABA is also called an important messenger that acts as the signaling mediator for regulating the adaptive response of plants to different environmental stress conditions. In this review, we will discuss the role of ABA in response to abiotic stress at the molecular level and ABA signaling. The review also deals with the effect of ABA in respect to gene expression.
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Affiliation(s)
- Saroj K Sah
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Mississippi State, Mississippi, MS, USA
| | - Kambham R Reddy
- Department of Plant and Soil Sciences, Mississippi State University Mississippi State, Mississippi, MS, USA
| | - Jiaxu Li
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Mississippi State, Mississippi, MS, USA
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Sah SK, Reddy KR, Li J. Abscisic Acid and Abiotic Stress Tolerance in Crop Plants. FRONTIERS IN PLANT SCIENCE 2016; 7:571. [PMID: 27200044 PMCID: PMC4855980 DOI: 10.3389/fpls.2016.00571] [Citation(s) in RCA: 556] [Impact Index Per Article: 69.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 04/13/2016] [Indexed: 05/17/2023]
Abstract
Abiotic stress is a primary threat to fulfill the demand of agricultural production to feed the world in coming decades. Plants reduce growth and development process during stress conditions, which ultimately affect the yield. In stress conditions, plants develop various stress mechanism to face the magnitude of stress challenges, although that is not enough to protect them. Therefore, many strategies have been used to produce abiotic stress tolerance crop plants, among them, abscisic acid (ABA) phytohormone engineering could be one of the methods of choice. ABA is an isoprenoid phytohormone, which regulates various physiological processes ranging from stomatal opening to protein storage and provides adaptation to many stresses like drought, salt, and cold stresses. ABA is also called an important messenger that acts as the signaling mediator for regulating the adaptive response of plants to different environmental stress conditions. In this review, we will discuss the role of ABA in response to abiotic stress at the molecular level and ABA signaling. The review also deals with the effect of ABA in respect to gene expression.
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Affiliation(s)
- Saroj K. Sah
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State UniversityMississippi State, Mississippi, MS, USA
| | - Kambham R. Reddy
- Department of Plant and Soil Sciences, Mississippi State UniversityMississippi State, Mississippi, MS, USA
| | - Jiaxu Li
- Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State UniversityMississippi State, Mississippi, MS, USA
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55
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McAdam SAM, Brodribb TJ, Ross JJ. Shoot-derived abscisic acid promotes root growth. PLANT, CELL & ENVIRONMENT 2016; 39:652-9. [PMID: 26514625 DOI: 10.1111/pce.12669] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2015] [Revised: 10/19/2015] [Accepted: 10/26/2015] [Indexed: 05/18/2023]
Abstract
The phytohormone abscisic acid (ABA) plays a major role in regulating root growth. Most work to date has investigated the influence of root-sourced ABA on root growth during water stress. Here, we tested whether foliage-derived ABA could be transported to the roots, and whether this foliage-derived ABA had an influence on root growth under well-watered conditions. Using both application studies of deuterium-labelled ABA and reciprocal grafting between wild-type and ABA-biosynthetic mutant plants, we show that both ABA levels in the roots and root growth in representative angiosperms are controlled by ABA synthesized in the leaves rather than sourced from the roots. Foliage-derived ABA was found to promote root growth relative to shoot growth but to inhibit the development of lateral roots. Increased root auxin (IAA) levels in plants with ABA-deficient scions suggest that foliage-derived ABA inhibits root growth through the root growth-inhibitor IAA. These results highlight the physiological and morphological importance, beyond the control of stomata, of foliage-derived ABA. The use of foliar ABA as a signal for root growth has important implications for regulating root to shoot growth under normal conditions and suggests that leaf rather than root hydration is the main signal for regulating plant responses to moisture.
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Affiliation(s)
- Scott A M McAdam
- School of Biological Sciences, University of Tasmania, Hobart, Tasmania, 7001, Australia
| | - Timothy J Brodribb
- School of Biological Sciences, University of Tasmania, Hobart, Tasmania, 7001, Australia
| | - John J Ross
- School of Biological Sciences, University of Tasmania, Hobart, Tasmania, 7001, Australia
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56
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Li C, Shen H, Wang T, Wang X. ABA Regulates Subcellular Redistribution of OsABI-LIKE2, a Negative Regulator in ABA Signaling, to Control Root Architecture and Drought Resistance in Oryza sativa. PLANT & CELL PHYSIOLOGY 2015; 56:2396-408. [PMID: 26491145 DOI: 10.1093/pcp/pcv154] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2015] [Accepted: 10/13/2015] [Indexed: 05/22/2023]
Abstract
The phytohormone ABA is a key stress signal in plants. Although the identification of ABA receptors led to significant progress in understanding the Arabidopsis ABA signaling pathway, there are still many unsolved mysteries regarding ABA signaling in monocots, such as rice. Here, we report that a rice ortholog of AtABI1 and AtABI2, named OsABI-LIKE2 (OsABIL2), plays a negative role in rice ABA signaling. Overexpression of OsABIL2 not only led to ABA insensitivity, but also significantly altered plant developmental phenotypes, including stomatal density and root architecture, which probably caused the hypersensitivity to drought stress. OsABIL2 interacts with OsPYL1, SAPK8 and SAPK10 both in vitro and in vivo, and the phosphatase activity of OsABIL2 was repressed by ABA-bound OsPYL1. However, unlike many other solely nuclear-localized clade A type 2C protein phosphatases (PP2Cs), OsABIL2 is localized in both the nucleus and cytosol. Furthermore, OsABIL2 interacts with and co-localized with OsPYL1 mainly in the cytosol, and ABA treatment regulates the nucleus-cytosol distribution of OsABIL2, suggesting a different mechanism for the activation of ABA signaling. Taken together, this study provides significant insights into rice ABA signaling and indicates the important role of OsABIL2 in regulating root development.
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Affiliation(s)
- Chengxiang Li
- National Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200433, China
| | - Hongyun Shen
- National Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200433, China
| | - Tao Wang
- National Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200433, China National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Xuelu Wang
- National Key Laboratory of Crop Genetic Improvement, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
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57
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58
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Palaniyandi SA, Chung G, Kim SH, Yang SH. Molecular cloning and characterization of the ABA-specific glucosyltransferase gene from bean (Phaseolus vulgaris L.). JOURNAL OF PLANT PHYSIOLOGY 2015; 178:1-9. [PMID: 25747288 DOI: 10.1016/j.jplph.2015.01.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2014] [Revised: 01/16/2015] [Accepted: 01/20/2015] [Indexed: 05/18/2023]
Abstract
Levels of the plant hormone abscisic acid (ABA) are maintained in homeostasis by a balance of its biosynthesis, catabolism and conjugation. The detailed molecular and signaling events leading to strict homeostasis are not completely understood in crop plants. In this study, we obtained cDNA of an ABA-inducible, ABA-specific UDP-glucosyltransferase (ABAGT) from the bean plant (Phaseolus vulgaris L.) involved in conjugation of a glucose residue to ABA to form inactive ABA-glucose ester (ABA-GE) to examine its role during development and abiotic stress in bean. The bacterially expressed PvABAGTase enzyme showed ABA-specific glucosylation activity in vitro. A higher level of the PvABAGT transcript was observed in mature leaves, mature flowers, roots, seed coats and embryos as well as upon rehydration following a period of dehydration. Overexpression of 35S::PvABAGT in Arabidopsis showed reduced sensitivity to ABA compared with WT. The transgenic plants showed a high level of ABA-GE without significant decrease in the level of ABA compared with the wild type (WT) during dehydration stress. Upon rehydration, the levels of ABA and phaseic acid (PA) decreased in the WT and the PvABAGT-overexpressing lines with high levels of ABA-GE only in the transgenic plants. Our findings suggest that the PvABAGT gene could play a role in ABA homeostasis during development and stress responses in bean and its overexpression in Arabidopsis did not alter ABA homeostasis during dehydration stress.
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Affiliation(s)
- Sasikumar Arunachalam Palaniyandi
- Center for Nutraceutical and Pharmaceutical Materials, Myongji University, Cheoin-gu, Yongin 449-728, Gyeonggi-Do, Republic of Korea
| | - Gyuhwa Chung
- Department of Biotechnology, Chonnam National University, Chonnam, 550-749 Yeosu, Republic of Korea
| | - Sang Hyon Kim
- Division of Bioscience and Bioinformatics, College of Natural Science, Myongji University, Cheoin-gu, Yongin 449-728, Gyeonggi-Do, Republic of Korea.
| | - Seung Hwan Yang
- Center for Nutraceutical and Pharmaceutical Materials, Myongji University, Cheoin-gu, Yongin 449-728, Gyeonggi-Do, Republic of Korea.
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59
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Sugiura D, Sawakami K, Kojima M, Sakakibara H, Terashima I, Tateno M. Roles of gibberellins and cytokinins in regulation of morphological and physiological traits in Polygonum cuspidatum responding to light and nitrogen availabilities. FUNCTIONAL PLANT BIOLOGY : FPB 2015; 42:397-409. [PMID: 32480684 DOI: 10.1071/fp14212] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2014] [Accepted: 12/19/2014] [Indexed: 06/11/2023]
Abstract
We evaluated the roles of gibberellins (GAs) and cytokinins (CKs) in regulation of morphological traits such as biomass allocation and leaf mass per area (LMA). Seedlings of Polygonum cuspidatum Siebold & Zucc. were grown under various light and N availabilities. We exogenously sprayed solutions of gibberellin (GA3), benzyl adenine (BA), uniconazole (an inhibitor of GA biosynthesis) or their mixtures on the aboveground parts, and changes in morphological and physiological traits and relative growth rate (RGR) were analysed. Endogenous levels of GAs and CKs in the control plants were also quantified. The morphological traits were changed markedly by the spraying. Biomass allocation to leaves was increased by GA3 and BA, whereas it decreased by uniconazole. GA3 decreased LMA, whereas uniconazole increased it. We found close relationships among morphological and physiological traits such as photosynthetic rate and net assimilation rate, and RGR under all growth conditions. Seedlings with high levels of endogenous GAs or CKs and low levels of endogenous GAs or CKs showed morphologies similar to those sprayed with GA3 or BA, and those sprayed with uniconazole, respectively. Thus we concluded these phytohormones are involved in the regulation of biomass allocation responding to either light or N availability.
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Affiliation(s)
- Daisuke Sugiura
- Laboratory of Plant Ecology, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo 113-0033, Japan
| | - Koichiro Sawakami
- Nikko Botanical Garden, Graduate School of Science, The University of Tokyo, 1842 Hanaishi, Nikko, Tochigi 321-1435, Japan
| | - Mikiko Kojima
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Hitoshi Sakakibara
- RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Ichiro Terashima
- Laboratory of Plant Ecology, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo 113-0033, Japan
| | - Masaki Tateno
- Nikko Botanical Garden, Graduate School of Science, The University of Tokyo, 1842 Hanaishi, Nikko, Tochigi 321-1435, Japan
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60
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Humplík JF, Bergougnoux V, Jandová M, Šimura J, Pěnčík A, Tomanec O, Rolčík J, Novák O, Fellner M. Endogenous abscisic acid promotes hypocotyl growth and affects endoreduplication during dark-induced growth in tomato (Solanum lycopersicum L.). PLoS One 2015; 10:e0117793. [PMID: 25695830 PMCID: PMC4334974 DOI: 10.1371/journal.pone.0117793] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 12/31/2014] [Indexed: 11/30/2022] Open
Abstract
Dark-induced growth (skotomorphogenesis) is primarily characterized by rapid elongation of the hypocotyl. We have studied the role of abscisic acid (ABA) during the development of young tomato (Solanum lycopersicum L.) seedlings. We observed that ABA deficiency caused a reduction in hypocotyl growth at the level of cell elongation and that the growth in ABA-deficient plants could be improved by treatment with exogenous ABA, through which the plants show a concentration dependent response. In addition, ABA accumulated in dark-grown tomato seedlings that grew rapidly, whereas seedlings grown under blue light exhibited low growth rates and accumulated less ABA. We demonstrated that ABA promotes DNA endoreduplication by enhancing the expression of the genes encoding inhibitors of cyclin-dependent kinases SlKRP1 and SlKRP3 and by reducing cytokinin levels. These data were supported by the expression analysis of the genes which encode enzymes involved in ABA and CK metabolism. Our results show that ABA is essential for the process of hypocotyl elongation and that appropriate control of the endogenous level of ABA is required in order to drive the growth of etiolated seedlings.
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Affiliation(s)
- Jan F Humplík
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
| | - Véronique Bergougnoux
- Department of Molecular Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Olomouc, Czech Republic
| | - Michaela Jandová
- Department of Botany, Faculty of Science, Palacký University, Olomouc, Czech Republic
| | - Jan Šimura
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
| | - Aleš Pěnčík
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
| | - Ondřej Tomanec
- Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Palacký University, Olomouc, Czech Republic
| | - Jakub Rolčík
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
| | - Ondřej Novák
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
| | - Martin Fellner
- Laboratory of Growth Regulators & Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University & Institute of Experimental Botany ASCR, Olomouc, Czech Republic
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Cabot C, Sibole JV, Barceló J, Poschenrieder C. Lessons from crop plants struggling with salinity. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 226:2-13. [PMID: 25113445 DOI: 10.1016/j.plantsci.2014.04.013] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Revised: 03/28/2014] [Accepted: 04/21/2014] [Indexed: 05/25/2023]
Abstract
Salinity is a persistent problem, causing important losses in irrigated agriculture. According to global climate change prediction models, salinity is expected to expand in the near future. Although intensive studies have been conducted on the mechanisms by which plants cope with saline conditions, the multi-component nature of salt stress tolerance has rendered most plant breeding efforts to improve the plant's response to salinity unsuccessful. This occurs despite the extensive genetic diversity shown by higher plants for salt tolerance and the similar mechanisms found in salt-sensitive and salt-tolerant genotypes in response to the presence of excess of salts in the growth media. On the other hand, there is an urge to increase crop yield to the maximum to cope with the growing world population demands for food and fuel. Here, we examine some major elements and signaling mechanisms involved in the plant's response to salinity following the pathway of salt-footprints from the soil environment to leaf. Some of the possible contrasting determinants for a better-balanced resource allocation between salt tolerance and plant growth and yield are considered.
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Affiliation(s)
- Catalina Cabot
- Departament de Biologia, Universitat de les Illes Balears, 07122 Palma, Illes Balears, Spain.
| | - John V Sibole
- Departament de Biologia, Universitat de les Illes Balears, 07122 Palma, Illes Balears, Spain
| | - Juan Barceló
- Lab. Fisiologia Vegetal, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Spain
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Pierik R, Testerink C. The art of being flexible: how to escape from shade, salt, and drought. PLANT PHYSIOLOGY 2014; 166:5-22. [PMID: 24972713 PMCID: PMC4149730 DOI: 10.1104/pp.114.239160] [Citation(s) in RCA: 103] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2014] [Accepted: 05/20/2014] [Indexed: 05/18/2023]
Abstract
Environmental stresses, such as shading of the shoot, drought, and soil salinity, threaten plant growth, yield, and survival. Plants can alleviate the impact of these stresses through various modes of phenotypic plasticity, such as shade avoidance and halotropism. Here, we review the current state of knowledge regarding the mechanisms that control plant developmental responses to shade, salt, and drought stress. We discuss plant hormones and cellular signaling pathways that control shoot branching and elongation responses to shade and root architecture modulation in response to drought and salinity. Because belowground stresses also result in aboveground changes and vice versa, we then outline how a wider palette of plant phenotypic traits is affected by the individual stresses. Consequently, we argue for a research agenda that integrates multiple plant organs, responses, and stresses. This will generate the scientific understanding needed for future crop improvement programs aiming at crops that can maintain yields under variable and suboptimal conditions.
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Affiliation(s)
- Ronald Pierik
- Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands (R.P.); andPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (C.T.)
| | - Christa Testerink
- Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands (R.P.); andPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (C.T.)
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63
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Farooq M, Hussain M, Siddique KHM. Drought Stress in Wheat during Flowering and Grain-filling Periods. CRITICAL REVIEWS IN PLANT SCIENCES 2014. [PMID: 0 DOI: 10.1080/07352689.2014.875291] [Citation(s) in RCA: 139] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
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64
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Ji H, Li X. ABA mediates PEG-mediated premature differentiation of root apical meristem in plants. PLANT SIGNALING & BEHAVIOR 2014; 9:e977720. [PMID: 25517011 PMCID: PMC4622860 DOI: 10.4161/15592324.2014.977720] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Root apical meristem (RAM) is central for indeterminate growth of plant roots and in sensing environmental stimuli, such as water status. Recently, we reported that PEG8000-simulated mild and moderate osmotic stress induces premature differentiation of RAM, which is a conserved adaptive mechanism in higher plants to cope with water stress. Microarray data analysis revealed that the ABA signaling pathway may be involved in water stress-induced RAM premature differentiation. Here we showed that in wheat, ABA contents increased under water stress with the highest level of ABA in the RAM. Exogenous ABA also induces RAM premature differentiation in both wheat and Arabidopsis plants. Further genetic analysis revealed that loss of function mutations in ABA2 and ABA receptors significantly reduced the level of root tip swelling and RAM premature differentiation in response to PEG-simulated water stress. Together, the results suggest that ABA participates in regulation of PEG-mediated premature differentiation of RAM.
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Affiliation(s)
- Hongtao Ji
- The State Key Laboratory of Plant Cell & Chromosome Engineering; Center for Agricultural Research Resources; Institute of Genetics and Developmental Biology; Chinese Academy of Sciences; Shijiazhuang, Hebei, China
| | - Xia Li
- The State Key Laboratory of Plant Cell & Chromosome Engineering; Center for Agricultural Research Resources; Institute of Genetics and Developmental Biology; Chinese Academy of Sciences; Shijiazhuang, Hebei, China
- Correspondence to: Xia Li;
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Hu YJ, Shi LX, Sun W, Guo JX. Effects of abscisic acid and brassinolide on photosynthetic characteristics of Leymus chinensis from Songnen Plain grassland in Northeast China. BOTANICAL STUDIES 2013; 54:42. [PMID: 28510904 PMCID: PMC5430352 DOI: 10.1186/1999-3110-54-42] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2011] [Accepted: 04/02/2013] [Indexed: 06/07/2023]
Abstract
BACKGROUND It has been well demonstrated that plant growth regulators have important functions in multiple physiological processes. ABA and BR play crucial roles in response of crops to stresses. Photosynthetic capacity of Leymus. chinensis treated by various concentrations of ABA and BR in combination was determined. Further more, the mechanisms of ABA and BR treatments and potential for recovery of saline-alkali grasslands were discussed. RESULTS Abscisic acid (ABA) and brassinolide (BR) affected leaf gas exchange, growth and biomass of L. chinensis. The application of ABA and BR mixtures, especially that of 0.01 mM ABA and 2 × 10-4 mM BR, increased the net photosynthetic rate, stomatal conductance, water use efficiency, the maximum net photosynthetic rate, light-saturated rate, leaf respiration rate, the maximum RUBP carboxylation rate, the maximum electron transport rate, the maximum triose-phosphate utilization, carboxylation efficiency and the quantum efficiency of PSII and subsequently enhanced density, height and biomass in L. chinensis. We also observed reduction in the light compensation and saturation points following the application of ABA and BR treatments. CONCLUSIONS We concluded that proper use of plant growth regulators can enhance the plant growth and productivity on the Songnen grassland, which is particularly important for the improvement of saline - alkaline grassland and the yield of grazing lands.
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Affiliation(s)
- Yong-Jun Hu
- Key Laboratory for Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, 130024 China
- School of Life Sciences, Changchun Normal University, Changchun 130032 China
| | - Lian-Xuan Shi
- Key Laboratory for Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, 130024 China
| | - Wei Sun
- Key Laboratory for Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, 130024 China
| | - Ji-Xun Guo
- Key Laboratory for Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, 130024 China
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66
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DE BRUIJN S, BUDDENDORF CH, VREUGDENHIL D. Characterization of the ABA-deficientPisum sativum‘wilty’ mutant. ACTA ACUST UNITED AC 2013. [DOI: 10.1111/j.1438-8677.1993.tb00724.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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67
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Baluška F, Mancuso S. Root apex transition zone as oscillatory zone. FRONTIERS IN PLANT SCIENCE 2013; 4:354. [PMID: 24106493 PMCID: PMC3788588 DOI: 10.3389/fpls.2013.00354] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2013] [Accepted: 08/22/2013] [Indexed: 05/17/2023]
Abstract
Root apex of higher plants shows very high sensitivity to environmental stimuli. The root cap acts as the most prominent plant sensory organ; sensing diverse physical parameters such as gravity, light, humidity, oxygen, and critical inorganic nutrients. However, the motoric responses to these stimuli are accomplished in the elongation region. This spatial discrepancy was solved when we have discovered and characterized the transition zone which is interpolated between the apical meristem and the subapical elongation zone. Cells of this zone are very active in the cytoskeletal rearrangements, endocytosis and endocytic vesicle recycling, as well as in electric activities. Here we discuss the oscillatory nature of the transition zone which, together with several other features of this zone, suggest that it acts as some kind of command center. In accordance with the early proposal of Charles and Francis Darwin, cells of this root zone receive sensory information from the root cap and instruct the motoric responses of cells in the elongation zone.
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Affiliation(s)
- František Baluška
- Institute of Cellular and Molecular Botany, Department of Plant Cell Biology, University of BonnBonn, Germany
| | - Stefano Mancuso
- LINV – DiSPAA, Department of Agri-Food and Environmental Science, University of FlorenceSesto Fiorentino, Italy
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68
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Tseng IC, Hong CY, Yu SM, Ho THD. Abscisic acid- and stress-induced highly proline-rich glycoproteins regulate root growth in rice. PLANT PHYSIOLOGY 2013; 163:118-34. [PMID: 23886623 PMCID: PMC3762635 DOI: 10.1104/pp.113.217547] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
In the root of rice (Oryza sativa), abscisic acid (ABA) treatment, salinity, or water deficit stress induces the expression of a family of four genes, REPETITIVE PROLINE-RICH PROTEIN (RePRP). These genes encode two subclasses of novel proline-rich glycoproteins with highly repetitive PX₁PX₂ motifs, RePRP1 and RePRP2. RePRP orthologs exist only in monocotyledonous plants, and their functions are virtually unknown. Rice RePRPs are heavily glycosylated with arabinose and glucose on multiple hydroxyproline residues. They are significantly different from arabinogalactan proteins that have glycan chains composed of arabinose and galactose. Transient and stable expressions of RePRP-green fluorescent protein reveal that a fraction of this protein is localized to the plasma membrane. In rice roots, ABA treatment increases RePRP expression preferentially in the elongation zone. Overexpression of RePRP in transgenic rice reduces root cell elongation in the absence of ABA, similar to the effect of ABA on wild-type roots. Conversely, simultaneous knockdown of the expression of RePRP1 and RePRP2 reduces the root sensitivity to ABA, indicating that RePRP proteins play an essential role in ABA/stress regulation of root growth and development. Moreover, rice RePRPs specifically interact with a polysaccharide, arabinogalactan, in a dosage-dependent manner. It is suggested that RePRP1 and RePRP2 are functionally redundant suppressors of root cell expansion and probably act through interactions with cell wall components near the plasma membrane.
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69
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Jung JKH, McCouch S. Getting to the roots of it: Genetic and hormonal control of root architecture. FRONTIERS IN PLANT SCIENCE 2013; 4:186. [PMID: 23785372 PMCID: PMC3685011 DOI: 10.3389/fpls.2013.00186] [Citation(s) in RCA: 145] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2013] [Accepted: 05/22/2013] [Indexed: 05/17/2023]
Abstract
Root system architecture (RSA) - the spatial configuration of a root system - is an important developmental and agronomic trait, with implications for overall plant architecture, growth rate and yield, abiotic stress resistance, nutrient uptake, and developmental plasticity in response to environmental changes. Root architecture is modulated by intrinsic, hormone-mediated pathways, intersecting with pathways that perceive and respond to external, environmental signals. The recent development of several non-invasive 2D and 3D root imaging systems has enhanced our ability to accurately observe and quantify architectural traits on complex whole-root systems. Coupled with the powerful marker-based genotyping and sequencing platforms currently available, these root phenotyping technologies lend themselves to large-scale genome-wide association studies, and can speed the identification and characterization of the genes and pathways involved in root system development. This capability provides the foundation for examining the contribution of root architectural traits to the performance of crop varieties in diverse environments. This review focuses on our current understanding of the genes and pathways involved in determining RSA in response to both intrinsic and extrinsic (environmental) response pathways, and provides a brief overview of the latest root system phenotyping technologies and their potential impact on elucidating the genetic control of root development in plants.
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Affiliation(s)
| | - Susan McCouch
- Department of Plant Breeding and Genetics, Cornell UniversityIthaca, NY, USA
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70
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Zhang Z, Voothuluru P, Yamaguchi M, Sharp RE, Peck SC. Developmental distribution of the plasma membrane-enriched proteome in the maize primary root growth zone. FRONTIERS IN PLANT SCIENCE 2013; 4:33. [PMID: 23508561 PMCID: PMC3589600 DOI: 10.3389/fpls.2013.00033] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Accepted: 02/10/2013] [Indexed: 05/29/2023]
Abstract
Within the growth zone of the maize primary root, there are well-defined patterns of spatial and temporal organization of cell division and elongation. However, the processes underlying this organization remain poorly understood. To gain additional insights into the differences amongst the defined regions, we performed a proteomic analysis focusing on fractions enriched for plasma membrane (PM) proteins. The PM is the interface between the plant cell and the apoplast and/or extracellular space. As such, it is a key structure involved in the exchange of nutrients and other molecules as well as in the integration of signals that regulate growth and development. Despite the important functions of PM-localized proteins in mediating these processes, a full understanding of dynamic changes in PM proteomes is often impeded by low relative concentrations relative to total proteins. Using a relatively simple strategy of treating microsomal fractions with Brij-58 detergent to enrich for PM proteins, we compared the developmental distribution of proteins within the root growth zone which revealed a number of previously known as well as novel proteins with interesting patterns of abundance. For instance, the quantitative proteomic analysis detected a gradient of PM aquaporin proteins similar to that previously reported using immunoblot analyses, confirming the veracity of this strategy. Cellulose synthases increased in abundance with increasing distance from the root apex, consistent with expected locations of cell wall deposition. The similar distribution pattern for Brittle-stalk-2-like protein implicates that this protein may also have cell wall related functions. These results show that the simplified PM enrichment method previously demonstrated in Arabidopsis can be successfully applied to completely unrelated plant tissues and provide insights into differences in the PM proteome throughout growth and development zones of the maize primary root.
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Affiliation(s)
- Zhe Zhang
- Division of Biochemistry, University of MissouriColumbia, MO, USA
- Christopher S. Bond Life Sciences Center, University of MissouriColumbia, MO, USA
- Interdisciplinary Plant Group, University of MissouriColumbia, MO, USA
| | - Priyamvada Voothuluru
- Interdisciplinary Plant Group, University of MissouriColumbia, MO, USA
- Division of Plant Sciences, University of MissouriColumbia, MO, USA
| | - Mineo Yamaguchi
- Interdisciplinary Plant Group, University of MissouriColumbia, MO, USA
- Division of Plant Sciences, University of MissouriColumbia, MO, USA
| | - Robert E. Sharp
- Interdisciplinary Plant Group, University of MissouriColumbia, MO, USA
- Division of Plant Sciences, University of MissouriColumbia, MO, USA
| | - Scott C. Peck
- Division of Biochemistry, University of MissouriColumbia, MO, USA
- Christopher S. Bond Life Sciences Center, University of MissouriColumbia, MO, USA
- Interdisciplinary Plant Group, University of MissouriColumbia, MO, USA
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71
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Voothuluru P, Sharp RE. Apoplastic hydrogen peroxide in the growth zone of the maize primary root under water stress. I. Increased levels are specific to the apical region of growth maintenance. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:1223-33. [PMID: 23071257 DOI: 10.1093/jxb/ers277] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Previous work on the adaptation of maize (Zea mays L.) primary root growth to water stress showed that cell elongation is maintained in the apical region of the growth zone but progressively inhibited further from the apex. Cell wall proteomic analysis suggested that levels of apoplastic reactive oxygen species (ROS), particularly hydrogen peroxide (H2O2), may be modified in a region-specific manner within the growth zone of water-stressed roots. Apoplastic ROS may have wall loosening or tightening effects and may also have other growth regulatory functions. To gain an understanding of how apoplastic ROS levels change under water stress, cerium chloride staining was used in conjunction with transmission electron microscopy to examine the spatial distribution of apoplastic H2O2. The results revealed that apoplastic H2O2 levels increased specifically in the apical region of the growth zone under water stress, correlating spatially with the maintenance of cell elongation. The basal regions of the growth zone of water-stressed roots and the entire growth zone of well-watered roots exhibited relatively low levels of apoplastic H2O2. The increase in apoplastic H2O2 in the apical region under water stress probably resulted, at least in part, from a pronounced increase in oxalate oxidase activity in this region. By contrast, well-watered roots showed negligible oxalate oxidase activity throughout the growth zone. The results show that changes in apoplastic ROS levels in the root growth zone under water-deficit conditions are regulated in a spatially-specific manner, suggesting that this response may play an important role in maize root adaptation to water stress.
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Affiliation(s)
- Priyamvada Voothuluru
- Division of Plant Sciences and Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA
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72
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Jung JKH, McCouch S. Getting to the roots of it: Genetic and hormonal control of root architecture. FRONTIERS IN PLANT SCIENCE 2013. [PMID: 23785372 DOI: 10.3389/fpls.2013.0018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Root system architecture (RSA) - the spatial configuration of a root system - is an important developmental and agronomic trait, with implications for overall plant architecture, growth rate and yield, abiotic stress resistance, nutrient uptake, and developmental plasticity in response to environmental changes. Root architecture is modulated by intrinsic, hormone-mediated pathways, intersecting with pathways that perceive and respond to external, environmental signals. The recent development of several non-invasive 2D and 3D root imaging systems has enhanced our ability to accurately observe and quantify architectural traits on complex whole-root systems. Coupled with the powerful marker-based genotyping and sequencing platforms currently available, these root phenotyping technologies lend themselves to large-scale genome-wide association studies, and can speed the identification and characterization of the genes and pathways involved in root system development. This capability provides the foundation for examining the contribution of root architectural traits to the performance of crop varieties in diverse environments. This review focuses on our current understanding of the genes and pathways involved in determining RSA in response to both intrinsic and extrinsic (environmental) response pathways, and provides a brief overview of the latest root system phenotyping technologies and their potential impact on elucidating the genetic control of root development in plants.
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Affiliation(s)
- Janelle K H Jung
- Department of Plant Breeding and Genetics, Cornell University Ithaca, NY, USA
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73
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Jung JKH, McCouch S. Getting to the roots of it: Genetic and hormonal control of root architecture. FRONTIERS IN PLANT SCIENCE 2013. [PMID: 23785372 DOI: 10.3389/fpls.2013.00186/abstract] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Root system architecture (RSA) - the spatial configuration of a root system - is an important developmental and agronomic trait, with implications for overall plant architecture, growth rate and yield, abiotic stress resistance, nutrient uptake, and developmental plasticity in response to environmental changes. Root architecture is modulated by intrinsic, hormone-mediated pathways, intersecting with pathways that perceive and respond to external, environmental signals. The recent development of several non-invasive 2D and 3D root imaging systems has enhanced our ability to accurately observe and quantify architectural traits on complex whole-root systems. Coupled with the powerful marker-based genotyping and sequencing platforms currently available, these root phenotyping technologies lend themselves to large-scale genome-wide association studies, and can speed the identification and characterization of the genes and pathways involved in root system development. This capability provides the foundation for examining the contribution of root architectural traits to the performance of crop varieties in diverse environments. This review focuses on our current understanding of the genes and pathways involved in determining RSA in response to both intrinsic and extrinsic (environmental) response pathways, and provides a brief overview of the latest root system phenotyping technologies and their potential impact on elucidating the genetic control of root development in plants.
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Affiliation(s)
- Janelle K H Jung
- Department of Plant Breeding and Genetics, Cornell University Ithaca, NY, USA
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74
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Xu W, Jia L, Shi W, Liang J, Zhou F, Li Q, Zhang J. Abscisic acid accumulation modulates auxin transport in the root tip to enhance proton secretion for maintaining root growth under moderate water stress. THE NEW PHYTOLOGIST 2013; 197:139-150. [PMID: 23106247 DOI: 10.1111/nph.12004] [Citation(s) in RCA: 148] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Accepted: 09/16/2012] [Indexed: 05/18/2023]
Abstract
Maintenance of root growth is essential for plant adaptation to soil drying. Here, we tested the hypothesis that auxin transport is involved in mediating ABA's modulation by activating proton secretion in the root tip to maintain root growth under moderate water stress. Rice and Arabidopsis plants were raised under a hydroponic system and subjected to moderate water stress (-0.47 MPa) with polyethylene glycol (PEG). ABA accumulation, auxin transport and plasma membrane H(+)-ATPase activity at the root tip were monitored in addition to the primary root elongation and root hair density. We found that moderate water stress increases ABA accumulation and auxin transport in the root apex. Additionally, ABA modulation is involved in the regulation of auxin transport in the root tip. The transported auxin activates the plasma membrane H(+)-ATPase to release more protons along the root tip in its adaption to moderate water stress. The proton secretion in the root tip is essential in maintaining or promoting primary root elongation and root hair development under moderate water stress. These results suggest that ABA accumulation modulates auxin transport in the root tip, which enhances proton secretion for maintaining root growth under moderate water stress.
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Affiliation(s)
- Weifeng Xu
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, Hong Kong
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Liguo Jia
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, Hong Kong
- College of Agronomy, Inner Mongolia Agricultural University, Huhhot, China
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Jiansheng Liang
- College of Bioscience and Biotechnology, Yangzhou University, Yangzhou, China
| | - Feng Zhou
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Qianfeng Li
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, Hong Kong
| | - Jianhua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, Hong Kong
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75
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Mirzaei M, Soltani N, Sarhadi E, Pascovici D, Keighley T, Salekdeh GH, Haynes PA, Atwell BJ. Shotgun Proteomic Analysis of Long-distance Drought Signaling in Rice Roots. J Proteome Res 2011; 11:348-58. [DOI: 10.1021/pr2008779] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mehdi Mirzaei
- Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, NSW, Australia
| | - Neda Soltani
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, Karaj, Iran
| | - Elham Sarhadi
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, Karaj, Iran
| | - Dana Pascovici
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, NSW, Australia
| | - Tim Keighley
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, NSW, Australia
| | - Ghasem Hosseini Salekdeh
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, Karaj, Iran
| | - Paul A. Haynes
- Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, NSW, Australia
| | - Brian J. Atwell
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
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76
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Sharma S, Villamor JG, Verslues PE. Essential role of tissue-specific proline synthesis and catabolism in growth and redox balance at low water potential. PLANT PHYSIOLOGY 2011; 157:292-304. [PMID: 21791601 PMCID: PMC3165878 DOI: 10.1104/pp.111.183210] [Citation(s) in RCA: 190] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2011] [Accepted: 07/25/2011] [Indexed: 05/18/2023]
Abstract
To better define the still unclear role of proline (Pro) metabolism in drought resistance, we analyzed Arabidopsis (Arabidopsis thaliana) Δ(1)-pyrroline-5-carboxylate synthetase1 (p5cs1) mutants deficient in stress-induced Pro synthesis as well as proline dehydrogenase (pdh1) mutants blocked in Pro catabolism and found that both Pro synthesis and catabolism were required for optimal growth at low water potential (ψ(w)). The abscisic acid (ABA)-deficient mutant aba2-1 had similar reduction in root elongation as p5cs1 and p5cs1/aba2-1 double mutants. However, the reduced growth of aba2-1 but not p5cs1/aba2-1 could be complemented by exogenous ABA, indicating that Pro metabolism was required for ABA-mediated growth protection at low ψ(w). PDH1 maintained high expression in the root apex and shoot meristem at low ψ(w) rather than being repressed, as in the bulk of the shoot tissue. This, plus a reduced oxygen consumption and buildup of Pro in the root apex of pdh1-2, indicated that active Pro catabolism was needed to sustain growth at low ψ(w). Conversely, P5CS1 expression was most highly induced in shoot tissue. Both p5cs1-4 and pdh1-2 had a more reduced NADP/NADPH ratio than the wild type at low ψ(w). These results indicate a new model of Pro metabolism at low ψ(w) whereby Pro synthesis in the photosynthetic tissue regenerates NADP while Pro catabolism in meristematic and expanding cells is needed to sustain growth. Tissue-specific differences in Pro metabolism and function in maintaining a favorable NADP/NADPH ratio are relevant to understanding metabolic adaptations to drought and efforts to enhance drought resistance.
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Affiliation(s)
| | | | - Paul E. Verslues
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan
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77
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Tanaka K, Tantasirin C, Suzuki M. Interannual variation in leaf expansion and outbreak of a teak defoliator at a teak stand in northern Thailand. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2011; 21:1792-1801. [PMID: 21830719 DOI: 10.1890/10-1165.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The leaf area index (LAI) is a key factor affecting tree growth in forests. Following the outbreak of a defoliator, the LAI declines, serving as a useful indicator in forest management. In this study, daily radiative transmittance from above the canopy, which decreases exponentially with increasing LAI, was measured in a teak plantation (Tectona grandis L. f.) in northern Thailand from March through July in 2001-2008. Volumetric soil moisture was also measured at depths of 0.1, 0.2, 0.4, and 0.6 m. The negative logarithmic value of the ratio of daily downward solar radiation on the forest floor to that above the canopy (NLR; -ln[Sb decrease/Sdecrease]), was calculated as an indicator of leaf flush and subsequent leaf expansion. The NLR data indicated that leaf expansion began in late March and continued to the beginning of May during all eight years (with the day the leaves began to expand defined as D(B)). In addition, the peak in NLR values (NLR(P)), corresponding to the lowest value of a 99% confidence interval, occurred in July. The day when NLR first reached NLR(P) was defined as D(P), which always occurred in June, 31-85 days after D(B). The NLR indicated an increase in the population of Hyblaea puera (a teak defoliator) that was associated with greatly decreased leaf areas during two growth periods (D(B)-D(P)): the earliest D(B)-D(P) in 2001 and the second-earliest D(B)-D(P) in 2008. In almost all cases, soil moisture data indicated that leaf expansion occurred after increases in soil moisture at depths of 0.1-0.4 m even without increases at 0.6 m; in contrast, increases in shallow soil moisture (0.1-0.2 m) were insufficient to trigger leaf expansion at the stand level. Periods of soil drought at 0.1-0.4-m soil depths inhibited leaf expansion, resulting in prolongation of the interval between D(B) and D(P) during those years in which the D(B)'s occurred chronologically close to one another. Moreover, when drought did not limit leaf expansion, the D(B)-D(P) growth periods characterized by earlier D(B)'s tended to be longer than those with later D(B)'s.
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Affiliation(s)
- Katsunori Tanaka
- Research Institute for Global Change, Japan Agency for Marine-Earth Science and Technology, 3173-25 Showamachi, Kanazawa-ku, Yokohama, Kanagawa 236-0001, Japan.
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78
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Xia H, Camus-Kulandaivelu L, Stephan W, Tellier A, Zhang Z. Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes. Mol Ecol 2010; 19:4144-54. [PMID: 20831645 DOI: 10.1111/j.1365-294x.2010.04762.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We surveyed nucleotide diversity at two candidate genes LeNCED1 and pLC30-15, involved in an ABA (abscisic acid) signalling pathway, in two closely related tomato species Solanum peruvianum and Solanum chilense. Our six population samples (three for each species) cover a range of mesic to very dry habitats. The ABA pathway plays an important role in the plants' response to drought stress. LeNCED1 is an upstream gene involved in ABA biosynthesis, and pLC30-15 is a dehydrin gene positioned downstream in the pathway. The two genes show very different patterns of nucleotide variation. LeNCED1 exhibits very low nucleotide diversity relative to the eight neutral reference loci that were previously surveyed in these populations. This suggests that strong purifying selection has been acting on this gene. In contrast, pLC30-15 exhibits higher levels of nucleotide diversity and, in particular in S. chilense, higher genetic differentiation between populations than the reference loci, which is indicative of local adaptation. In the more drought-tolerant species S. chilense, one population (from Quicacha) shows a significant haplotype structure, which appears to be the result of positive (diversifying) selection.
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Affiliation(s)
- Hui Xia
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, ChinaSection of Evolutionary Biology, Department of Biology II, University of Munich (LMU), Planegg-Martinsried, GermanyResearch Unit 'Genetic Diversity and Breeding of Forest Tree Species', Cirad Biological System Department, TA A-39/C, Campus International de Baillarguet, 34398 Montpellier Cedex, France
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79
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Asins MJ, Bolarín MC, Pérez-Alfocea F, Estañ MT, Martínez-Andújar C, Albacete A, Villalta I, Bernet GP, Dodd IC, Carbonell EA. Genetic analysis of physiological components of salt tolerance conferred by Solanum rootstocks. What is the rootstock doing for the scion? TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2010; 121:105-15. [PMID: 20180091 DOI: 10.1007/s00122-010-1294-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Accepted: 02/01/2010] [Indexed: 05/10/2023]
Abstract
Grafting desirable crop varieties on stress-tolerant rootstocks provides an opportunity to increase crop salt tolerance. Here, a commercial hybrid tomato variety was grafted on two populations of recombinant inbred lines developed from a salt-sensitive genotype of Solanum lycopersicum var. cerasiforme, as female parent, and two salt-tolerant lines, as male parents, from S. pimpinellifolium, the P population, and S. cheesmaniae, the C population, to identify an easy screening method for identifying rootstocks conferring salt tolerance in terms of fruit yield. Potential physiological components of salt tolerance were assessed in the scion: leaf biomass, [Na(+)], nutrition, water relations and xylem ABA concentration. A significant correlation between scion fruit yield and scion leaf fresh weight, water potential or the ABA concentration was found in the C population under salinity, but the only detected QTL did not support this relationship. The rootstocks of the P population clearly affected seven traits related to the sodium, phosphorous and copper concentrations and water content of the scion leaf, showing heritability estimates around 0.4 or higher. According to heritability estimates in the P population, up to five QTLs were detected per trait. QTLs contributing over 15% to the total variance were found for P and Cu concentrations and water content of the scion leaf, and the proportion of fresh root weight. Correlation and QTL analysis suggests that rootstock-mediated improvement of fruit yield in the P population under salinity is mainly explained by the rootstock's ability to minimise perturbations in scion water status.
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Affiliation(s)
- M J Asins
- IVIA, Carretera Moncada-Náquera, km 4.5, Apartado Oficial, 46113, Moncada, Valencia, Spain.
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80
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Tardieu F, Parent B, Simonneau T. Control of leaf growth by abscisic acid: hydraulic or non-hydraulic processes? PLANT, CELL & ENVIRONMENT 2010; 33:636-47. [PMID: 20002334 DOI: 10.1111/j.1365-3040.2009.02091.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Abscisic acid (ABA) affects plant metabolism and water transfers via multiple mechanisms at cell, organ and whole plant levels. These mechanisms translate into contradictory effects on leaf growth, so the literature reports positive, null or negative effects of ABA on leaf growth upon water deficit. We review evidences based on genetic manipulations of ABA biosynthesis, feeding the plant with artificial ABA or partial root drying and provide elements to avoid confusions of effects. We propose that ABA has mainly three effects on growth. (i) Via its controlling effect on stomatal aperture and transpiration rate, an increased concentration of ABA tends to buffer the day-night alternations of leaf growth rate and the negative effect of evaporative demand. (ii) ABA tends to improve leaf growth via an increase in the conductance to water transfer in the plant as a result of increased tissue hydraulic conductivity. (iii) ABA has also a modest non-hydraulic effect which is negative in plants subjected to water deficit, either manipulated for ABA synthesis or fed with artificial ABA, but can be positive in well watered plants deficient of ABA. The overall effect of increasing ABA biosynthesis depends on the relative weight of each of these effects under different environmental scenarios.
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Affiliation(s)
- François Tardieu
- INRA, UMR Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, Montpellier, France
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81
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Yamaguchi M, Sharp RE. Complexity and coordination of root growth at low water potentials: recent advances from transcriptomic and proteomic analyses. PLANT, CELL & ENVIRONMENT 2010; 33:590-603. [PMID: 19895398 DOI: 10.1111/j.1365-3040.2009.02064.x] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Progress in understanding root growth regulation and adaptation under water-stressed conditions is reviewed, with emphasis on recent advances from transcriptomic and proteomic analyses of maize and soybean primary roots. In both systems, kinematic characterization of the spatial patterns of cell expansion within the root elongation zone showed that at low water potentials, elongation rates are preferentially maintained towards the root apex but are progressively inhibited at more basal locations resulting in a shortened growth zone. This characterization provided an essential foundation for extensive research into the physiological mechanisms of growth regulation in the maize primary root at low water potentials. Recently, these studies were expanded to include transcriptomic and cell wall proteomic analyses of the maize primary root, and a proteomic analysis of total soluble proteins in the soybean primary root. This review focuses on findings related to protection from oxidative damage, the potential roles of increased apoplastic reactive oxygen species in regulation of wall extension properties and other processes, region-specific phenylpropanoid metabolism as related to accumulation of (iso)flavonoids and wall phenolics and amino acid metabolism. The results provide novel insights into the complexity and coordination of the processes involved in root growth at low water potentials.
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82
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Yamaguchi M, Valliyodan B, Zhang J, Lenoble ME, Yu O, Rogers EE, Nguyen HT, Sharp RE. Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zone. PLANT, CELL & ENVIRONMENT 2010; 33:223-43. [PMID: 19906149 DOI: 10.1111/j.1365-3040.2009.02073.x] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
In water-stressed soybean primary roots, elongation was maintained at well-watered rates in the apical 4 mm (region 1), but was progressively inhibited in the 4-8 mm region (region 2), which exhibits maximum elongation in well-watered roots. These responses are similar to previous results for the maize primary root. To understand these responses in soybean, spatial profiles of soluble protein composition were analysed. Among the changes, the results indicate that region-specific regulation of phenylpropanoid metabolism may contribute to the distinct growth responses in the different regions. Several enzymes related to isoflavonoid biosynthesis increased in abundance in region 1, correlating with a substantial increase of isoflavonoid content in this region which could contribute to growth maintenance via various potential mechanisms. In contrast, caffeoyl-CoA O-methyltransferase, which is involved in lignin synthesis, was highly up-regulated in region 2. This response was associated with enhanced accumulation of lignin, which may be related to the inhibition of growth in this region. Several proteins that increased in abundance in both regions of water-stressed roots were related to protection from oxidative damage. In particular, an increase in the abundance of ferritin proteins effectively sequestered more iron and prevented excess free iron in the elongation zone under water stress.
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Affiliation(s)
- Mineo Yamaguchi
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
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83
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Tari I, Guóth A, Benyó D, Kovács J, Poór P, Wodala B. The roles of ABA, reactive oxygen species and nitric oxide in root growth during osmotic stress in wheat: comparison of a tolerant and a sensitive variety. ACTA BIOLOGICA HUNGARICA 2010; 61 Suppl:189-96. [PMID: 21565776 DOI: 10.1556/abiol.61.2010.suppl.18] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The effects of PEG 6000-induced osmotic stress (-0.976 MPa) on the root growth of young plants, and the changes in abscisic acid (ABA), reactive oxygen species (ROS) and NO contents were investigated in the root tips of a drought-tolerant and a drought-sensitive wheat cultivar (Triticum aestivum L. cvs. MV Emese and GK Élet, respectively). The root length of cv. MV Emese was more effectively reduced than that of GK Élet by osmotic stress. Concomitantly, the ABA content of the 15-mm apical zone of the roots remained at the control level in GK Élet cultivar, but in MV Emese it decreased significantly after the early phase of the experiment, indicating that the accumulation of ABA is necessary for the maintenance of root growth under osmotic stress. The extent of ROS accumulation relative to the respective control was more pronounced in the elongation zone of roots in MV Emese in the later stages of the experiment, while NO concentrations increased significantly early after PEG exposure, suggesting that high concentrations of ROS and NO were unfavourable for root expansion. In contrast, in cv. Élet, the high NO content in the elongation zone declined to the control level under osmotic stress within 4 days. The changes in root growth due to osmotic stress did not exhibit a correlation with the drought tolerance of the genotypes defined on the basis of the crop yield.
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Affiliation(s)
- Irma Tari
- Department of Plant Biology, Faculty of Science, University of Szeged, P.O. Box 654 H-6701 Szeged, Hungary.
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84
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Ehlert C, Maurel C, Tardieu F, Simonneau T. Aquaporin-mediated reduction in maize root hydraulic conductivity impacts cell turgor and leaf elongation even without changing transpiration. PLANT PHYSIOLOGY 2009; 150:1093-104. [PMID: 19369594 PMCID: PMC2689965 DOI: 10.1104/pp.108.131458] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2008] [Accepted: 04/11/2009] [Indexed: 05/18/2023]
Abstract
Root hydraulic conductivity in plants (Lp(r)) exhibits large variations in response to abiotic stimuli. In this study, we investigated the impact of dynamic, aquaporin-mediated changes of Lp(r) on leaf growth, water potential, and water flux throughout the plant. For this, we manipulated Lp(r) by subjecting roots to four independent treatments, with aquaporin inhibitors applied either to transpiring maize (Zea mays) plants grown in hydroponics or to detopped root systems for estimation of Lp(r). The treatments were acid load at pH 6.0 and 5.0 and hydrogen peroxide and anoxia applied for 1 to 2 h and subsequently reversed. First, we established that acid load affected cell hydraulic conductivity in maize root cortex. Lp(r) was reduced by all treatments by 31% to 63%, with half-times of about 15 min, and partly recovered when treatments were reversed. Cell turgor measured in the elongating zone of leaves decreased synchronously with Lp(r), and leaf elongation rate closely followed these changes across all treatments in a dose-dependent manner. Leaf and xylem water potentials also followed changes in Lp(r). Stomatal conductance and rates of transpiration and water uptake were not affected by Lp(r) reduction under low evaporative demand. Increased evaporative demand, when combined with acid load at pH 6.0, induced stomatal closure and amplified all other responses without altering their synchrony. Root pressurization reversed the impact of acid load or anoxia on leaf elongation rate and water potential, further indicating that changes in turgor mediated the response of leaf growth to reductions in Lp(r).
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Affiliation(s)
- Christina Ehlert
- Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, UMR759 INRA/Montpellier SupAgro, 34060 Montpellier, France
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85
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Rodrigues A, Santiago J, Rubio S, Saez A, Osmont KS, Gadea J, Hardtke CS, Rodriguez PL. The short-rooted phenotype of the brevis radix mutant partly reflects root abscisic acid hypersensitivity. PLANT PHYSIOLOGY 2009; 149:1917-28. [PMID: 19201913 PMCID: PMC2663733 DOI: 10.1104/pp.108.133819] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2008] [Accepted: 02/03/2009] [Indexed: 05/18/2023]
Abstract
To gain further insight into abscisic acid (ABA) signaling and its role in growth regulation, we have screened for Arabidopsis (Arabidopsis thaliana) mutants hypersensitive to ABA-mediated root growth inhibition. As a result, we have identified a loss-of-function allele of BREVIS RADIX (BRX) in the Columbia background, named brx-2, which shows enhanced response to ABA-mediated inhibition of root growth. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as in the regulation of auxin-responsive gene expression. Mutants affected in BR signaling that are not impaired in root growth, such as bes1-D, bzr1-D, and bsu1-D, also showed enhanced sensitivity to ABA-mediated inhibition of root growth. Triple loss-of-function mutants affected in PP2Cs, which act as negative regulators of ABA signaling, showed impaired root growth in the absence of exogenous ABA, indicating that disturbed regulation of ABA sensitivity impairs root growth. In agreement with this result, diminishing ABA sensitivity of brx-2 by crossing it with a 35S:HAB1 ABA-insensitive line allowed significantly higher recovery of root growth after brassinolide treatment. Finally, transcriptomic analysis revealed that ABA treatment negatively affects auxin signaling in wild-type and brx-2 roots and that ABA response is globally altered in brx-2. Taken together, our results reveal an interaction between BRs, auxin, and ABA in the control of root growth and indicate that altered sensitivity to ABA is partly responsible for the brx short-root phenotype.
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Affiliation(s)
- Americo Rodrigues
- Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, E-46022 Valencia, Spain
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86
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Duan B, Xuan Z, Zhang X, Korpelainen H, Li C. Interactions between drought, ABA application and supplemental UV-B in Populus yunnanensis. PHYSIOLOGIA PLANTARUM 2008; 134:257-269. [PMID: 18485056 DOI: 10.1111/j.1399-3054.2008.01128.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
To test whether drought and ABA application alter the effects of enhanced UV-B on the growth and biomass allocation of Populus yunnanensis Dode, cuttings were grown in pots at two ABA levels, two watering regimes and two UV-B levels for one growth season. Exposure to enhanced UV-B radiation significantly decreased plant growth and photosynthesis under well-watered conditions, but these effects were obscured by drought, which alone caused growth reduction. Drought may contribute to masking the effects of UV-B radiation. The accumulation of UV-B absorbing compounds and the increase of the ABA content induced by drought could reduce the effectiveness of UV-B radiation. ABA application did not have large direct effects on biomass accumulation and allocation. Evidence for interactions between UV-B and ABA was detected for only a few measured traits. Therefore, there was little evidence to support a pivotal role for ABA in regulating a centralized whole plant response to enhanced UV-B. Yet, we recorded an ABA-induced decrease in stomatal conductance (g(s)) and increase in UV-B absorbing compounds and carbon isotope composition (delta(13)C) in response to enhanced UV-B. The allometric analysis revealed that regression models between root and shoot biomass in response to enhanced UV-B are different for plants under well-watered and drought conditions. Enhanced UV-B led to a significant displacement of the allometric regression line under well-watered condition, while allometric trajectories for both UV-B regimes did not differ significantly under drought condition.
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Affiliation(s)
- Baoli Duan
- Center for Ecological Studies, Chengdu Institute of Biology, Chinese Academy of Sciences, PO Box 416, Chengdu 610041, China
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87
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Ma N, Xue J, Li Y, Liu X, Dai F, Jia W, Luo Y, Gao J. Rh-PIP2;1, a rose aquaporin gene, is involved in ethylene-regulated petal expansion. PLANT PHYSIOLOGY 2008; 148:894-907. [PMID: 18715962 PMCID: PMC2556823 DOI: 10.1104/pp.108.120154] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2008] [Accepted: 08/10/2008] [Indexed: 05/18/2023]
Abstract
Aquaporins are water channel proteins that facilitate the passage of water through biological membranes and play a crucial role in plant growth. We showed that ethylene treatment significantly reduced petal size, inhibited expansion of petal abaxial subepidermal cells, and decreased petal water content in rose (Rosa hybrida 'Samantha'). Here, we report the isolation of a plasma membrane aquaporin (PIP) gene, Rh-PIP2;1, and characterized its potential role in ethylene-inhibited petal expansion. Rh-PIP2;1 is mainly localized on the plasma membrane and belongs to the class 2 subfamily of PIP proteins. We show that Rh-PIP2;1 is an active water channel. The transcripts of Rh-PIP2;1 are highly abundant in petal epidermal cells, especially in the abaxial subepidermal cells. The expression of Rh-PIP2;1 is highly correlated with petal expansion and tightly down-regulated by ethylene. Furthermore, we demonstrate that in Rh-PIP2;1-silenced flowers, petal expansion was greatly inhibited and anatomical features of the petals were similar to those of ethylene-treated flowers. We argue that Rh-PIP2;1 plays an important role in petal cell expansion and that ethylene inhibits petal expansion of roses at least partially by suppressing Rh-PIP2;1 expression.
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Affiliation(s)
- Nan Ma
- Department of Ornamental Horticulture, China Agricultural University, Beijing, China
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88
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Vysotskaya LB, Korobova AV, Kudoyarova GR. Abscisic acid accumulation in the roots of nutrient-limited plants: its impact on the differential growth of roots and shoots. JOURNAL OF PLANT PHYSIOLOGY 2008; 165:1274-9. [PMID: 18166245 DOI: 10.1016/j.jplph.2007.08.014] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2007] [Revised: 08/23/2007] [Accepted: 08/24/2007] [Indexed: 05/16/2023]
Abstract
We describe the involvement of abscisic acid (ABA) in the control of differential growth of roots and shoots of nutrient limited durum wheat plants. A ten-fold dilution of the optimal concentration of nutrient solution inhibited shoot growth, while root growth remained unchanged, resulting in a decreased shoot/root ratio. Addition of fluridone (inhibitor of ABA synthesis) prevented growth allocation in favour of the roots. This suggests the involvement of ABA in the redirecting of growth in favour of roots under limited nutrient supply. The ABA content was greater in shoots and growing apical root parts of starved plants than in nutrient sufficient plants. Accumulation of ABA in shoots of nutrient deficient plants was linked to a decrease in leaf turgor. Increased flow of ABA in the phloem apparently contributed to the accumulation of ABA in the apical part of the roots. Thus, partitioning of growth between roots and shoots of wheat plants limited in mineral nutrients appears to be modulated by accumulation of ABA in roots. This ABA may originate in the shoots, where its synthesis is stimulated by the loss of leaf turgor.
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Affiliation(s)
- Lidiya B Vysotskaya
- Institute of Biology, Ufa Research Centre, Russian Academy of Sciences, 450054 Ufa, Russian Federation
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89
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Neumann PM. Coping mechanisms for crop plants in drought-prone environments. ANNALS OF BOTANY 2008; 101:901-7. [PMID: 18252764 PMCID: PMC2710230 DOI: 10.1093/aob/mcn018] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2007] [Revised: 01/03/2008] [Accepted: 01/17/2008] [Indexed: 05/18/2023]
Abstract
BACKGROUND Drought is a major limitation to plant productivity. Various options are available for increasing water availability and sustaining growth of crop plants in drought-prone environments. SCOPE After a general introduction to the problems of water availability, this review focuses on a critical evaluation of recent progress in unravelling mechanisms for modifying plant growth responses to drought. CONCLUSIONS Investigations of key regulatory mechanisms integrating plant growth responses to water deficits at the whole-organism, cellular and genomic levels continue to provide novel and exiting research findings. For example, recent reports contradict the widespread conception that root-derived abscisic acid is necessarily involved in signalling for stomatal and shoot-growth responses to soil water deficits. The findings bring into question the theoretical basis for alternate-side root-irrigation techniques. Similarly, recent reports indicate that increased ABA production or increased aquaporin expression did not lead to improved drought resistance. Other reports have concerned key genes and proteins involved in regulation of flowering (FT), vegetative growth (DELLA), leaf senescence (IPT) and desiccation tolerance (LEA). Introgression of such genes, with suitable promoters, can greatly impact on whole-plant responses to drought. Further developments could facilitate the introduction by breeders of new crop varieties with growth physiologies tailored to improved field performance under drought. Parallel efforts to encourage the introduction of supplementary irrigation with water made available by improved conservation measures and by sea- or brackish-water desalination, will probably provide comprehensive solutions to coping with drought-prone environments.
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Affiliation(s)
- Peter M Neumann
- Department of Environmental, Water and Agricultural Engineering, Faculty of Civil and Environmental Engineering, Technion Israel Institute of Technology, Haifa 32000, Israel.
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90
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Spollen WG, Tao W, Valliyodan B, Chen K, Hejlek LG, Kim JJ, LeNoble ME, Zhu J, Bohnert HJ, Henderson D, Schachtman DP, Davis GE, Springer GK, Sharp RE, Nguyen HT. Spatial distribution of transcript changes in the maize primary root elongation zone at low water potential. BMC PLANT BIOLOGY 2008; 8:32. [PMID: 18387193 PMCID: PMC2364623 DOI: 10.1186/1471-2229-8-32] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2007] [Accepted: 04/03/2008] [Indexed: 05/20/2023]
Abstract
BACKGROUND Previous work showed that the maize primary root adapts to low Psiw (-1.6 MPa) by maintaining longitudinal expansion in the apical 3 mm (region 1), whereas in the adjacent 4 mm (region 2) longitudinal expansion reaches a maximum in well-watered roots but is progressively inhibited at low Psiw. To identify mechanisms that determine these responses to low Psiw, transcript expression was profiled in these regions of water-stressed and well-watered roots. In addition, comparison between region 2 of water-stressed roots and the zone of growth deceleration in well-watered roots (region 3) distinguished stress-responsive genes in region 2 from those involved in cell maturation. RESULTS Responses of gene expression to water stress in regions 1 and 2 were largely distinct. The largest functional categories of differentially expressed transcripts were reactive oxygen species and carbon metabolism in region 1, and membrane transport in region 2. Transcripts controlling sucrose hydrolysis distinguished well-watered and water-stressed states (invertase vs. sucrose synthase), and changes in expression of transcripts for starch synthesis indicated further alteration in carbon metabolism under water deficit. A role for inositols in the stress response was suggested, as was control of proline metabolism. Increased expression of transcripts for wall-loosening proteins in region 1, and for elements of ABA and ethylene signaling were also indicated in the response to water deficit. CONCLUSION The analysis indicates that fundamentally different signaling and metabolic response mechanisms are involved in the response to water stress in different regions of the maize primary root elongation zone.
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Affiliation(s)
- William G Spollen
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
- Research Support Computing, University of Missouri, Columbia, MO 65211, USA
| | - Wenjing Tao
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
- Bio-Rad Laboratories, 2000 Alfred Nobel Drive, Hercules, CA 94547, USA
| | - Babu Valliyodan
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Kegui Chen
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Lindsey G Hejlek
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Jong-Joo Kim
- Department of Animal Science, University of Arizona, Tucson, Arizona 85721, USA
- School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 712749 South Korea
- School of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 712749 South Korea
| | - Mary E LeNoble
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Jinming Zhu
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Hans J Bohnert
- Department of Plant Biology and Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
- W. M. Keck Center for Comparative and Functional Genomics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - David Henderson
- Department of Animal Science, University of Arizona, Tucson, Arizona 85721, USA
- Insightful Corporation, Seattle, WA 98109, USA
| | | | - Georgia E Davis
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Gordon K Springer
- Department of Computer Science, University of Missouri, Columbia, MO 65211, USA
| | - Robert E Sharp
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Henry T Nguyen
- Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA
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91
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Zhu J, Alvarez S, Marsh EL, Lenoble ME, Cho IJ, Sivaguru M, Chen S, Nguyen HT, Wu Y, Schachtman DP, Sharp RE. Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit. PLANT PHYSIOLOGY 2007; 145:1533-48. [PMID: 17951457 PMCID: PMC2151692 DOI: 10.1104/pp.107.107250] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2007] [Accepted: 10/13/2007] [Indexed: 05/17/2023]
Abstract
Previous work on the adaptation of maize (Zea mays) primary roots to water deficit showed that cell elongation is maintained preferentially toward the apex, and that this response involves modification of cell wall extension properties. To gain a comprehensive understanding of how cell wall protein (CWP) composition changes in association with the differential growth responses to water deficit in different regions of the elongation zone, a proteomics approach was used to examine water soluble and loosely ionically bound CWPs. The results revealed major and predominantly region-specific changes in protein profiles between well-watered and water-stressed roots. In total, 152 water deficit-responsive proteins were identified and categorized into five groups based on their potential function in the cell wall: reactive oxygen species (ROS) metabolism, defense and detoxification, hydrolases, carbohydrate metabolism, and other/unknown. The results indicate that stress-induced changes in CWPs involve multiple processes that are likely to regulate the response of cell elongation. In particular, the changes in protein abundance related to ROS metabolism predicted an increase in apoplastic ROS production in the apical region of the elongation zone of water-stressed roots. This was verified by quantification of hydrogen peroxide content in extracted apoplastic fluid and by in situ imaging of apoplastic ROS levels. This response could contribute directly to the enhancement of wall loosening in this region. This large-scale proteomic analysis provides novel insights into the complexity of mechanisms that regulate root growth under water deficit conditions and highlights the spatial differences in CWP composition in the root elongation zone.
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Affiliation(s)
- Jinming Zhu
- Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA
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92
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De Costa W, Zörb C, Hartung W, Schubert S. Salt resistance is determined by osmotic adjustment and abscisic acid in newly developed maize hybrids in the first phase of salt stress. PHYSIOLOGIA PLANTARUM 2007; 131:311-21. [PMID: 18251902 DOI: 10.1111/j.1399-3054.2007.00962.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
This study investigated the mechanisms of salt resistance of four maize (Zea mays L.) hybrids [cultivar (cv.) Pioneer 3906 and newly developed hybrids SR03, SR12 and SR13] during the first phase of salt stress. Plants were grown in aerated nutrient solutions at 1 mM Na+ (control) and 100 mM Na+ (salt stress). Stress was imposed in 25 mM steps and plants were harvested after 2 days at 100 mM Na+. At 100 mM Na+ the area of the fourth leaf, which developed under salt stress, did not change significantly in SR03 and SR12 whereas significant reductions were observed in cv. Pioneer 3906 and SR13. Concentrations of assimilates (i.e. glucose, fructose and sucrose) in the shoot sap were significantly greater under salt stress in SR03 and SR12. However, the greater assimilate supply was not responsible for their salt resistance as there were no significant reductions in assimilate concentrations even in the other two genotypes. Shoot turgor and growth were maintained in SR03 and SR12 at 100 mM Na+ through significant increases in osmolality of the shoot sap. Concentrations of free ABA and ABA-glucose esters (ABA-GE) in the growing region of the fourth leaf increased significantly under salt stress in all genotypes. Leaf area at 100 mM Na(+), expressed as a percentage of that at 1 mM, showed significant positive relationships with free ABA (R(2) = 0.62) and the sum of free ABA and ABA-GE (R(2) = 0.65). Results of this study indicate clearly that a combination of partial osmotic adjustment, a possible reduction of the sensitivity of leaf growth under salt stress to increased ABA concentrations and a growth-promoting function regulated by ABA is responsible for salt resistance in the first phase of salt stress. Genotypic variation in these mechanisms can be utilized to breed salt-resistant genotypes in maize.
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Affiliation(s)
- Weerathunga De Costa
- Department of Crop Science, Faculty of Agriculture, University of Peradeniya, Peradeniya 20400, Sri Lanka.
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93
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Thompson AJ, Andrews J, Mulholland BJ, McKee JMT, Hilton HW, Horridge JS, Farquhar GD, Smeeton RC, Smillie IRA, Black CR, Taylor IB. Overproduction of abscisic acid in tomato increases transpiration efficiency and root hydraulic conductivity and influences leaf expansion. PLANT PHYSIOLOGY 2007; 143:1905-17. [PMID: 17277097 PMCID: PMC1851808 DOI: 10.1104/pp.106.093559] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2006] [Accepted: 01/24/2007] [Indexed: 05/13/2023]
Abstract
Overexpression of genes that respond to drought stress is a seemingly attractive approach for improving drought resistance in crops. However, the consequences for both water-use efficiency and productivity must be considered if agronomic utility is sought. Here, we characterize two tomato (Solanum lycopersicum) lines (sp12 and sp5) that overexpress a gene encoding 9-cis-epoxycarotenoid dioxygenase, the enzyme that catalyzes a key rate-limiting step in abscisic acid (ABA) biosynthesis. Both lines contained more ABA than the wild type, with sp5 accumulating more than sp12. Both had higher transpiration efficiency because of their lower stomatal conductance, as demonstrated by increases in delta(13)C and delta(18)O, and also by gravimetric and gas-exchange methods. They also had greater root hydraulic conductivity. Under well-watered glasshouse conditions, mature sp5 plants were found to have a shoot biomass equal to the wild type despite their lower assimilation rate per unit leaf area. These plants also had longer petioles, larger leaf area, increased specific leaf area, and reduced leaf epinasty. When exposed to root-zone water deficits, line sp12 showed an increase in xylem ABA concentration and a reduction in stomatal conductance to the same final levels as the wild type, but from a different basal level. Indeed, the main difference between the high ABA plants and the wild type was their performance under well-watered conditions: the former conserved soil water by limiting maximum stomatal conductance per unit leaf area, but also, at least in the case of sp5, developed a canopy more suited to light interception, maximizing assimilation per plant, possibly due to improved turgor or suppression of epinasty.
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Affiliation(s)
- Andrew J Thompson
- Warwick HRI, Wellesbourne, University of Warwick, Warwickshire CV35 9EF, United Kingdom.
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94
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Voisin AS, Reidy B, Parent B, Rolland G, Redondo E, Gerentes D, Tardieu F, Muller B. Are ABA, ethylene or their interaction involved in the response of leaf growth to soil water deficit? An analysis using naturally occurring variation or genetic transformation of ABA production in maize. PLANT, CELL & ENVIRONMENT 2006; 29:1829-40. [PMID: 16913872 DOI: 10.1111/j.1365-3040.2006.01560.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
The role of abscisic acid (ABA) and its possible interaction with ethylene in mediating leaf elongation response to soil water deficit are a matter of controversy. To address this question, we used a set of maize genotypes with various levels of ABA either due to natural variability or to genetic transformation targeted on NCED/VP14, a key enzyme of ABA synthesis. The transgenic lines yielded less strong phenotypes than available mutants, making it possible to use them under normal growing conditions. We focused on leaf elongation during night periods in order to avoid the confounding effect of ABA on leaf water status. Our results suggest that over a wide range, internal ABA level (measured in both leaf extracts or xylem sap) has no clear effect on leaf elongation response to soil water deficit, except in the case of an antisense line presenting the strongest reduction in ABA accumulation that showed a slight maintenance of leaf elongation during water deficit. Leaf ethylene production rate was variable and not related to water deficit except in the ABA-deficient transgenic lines where it was increased by water deficit on average but not systematically. Moreover, variability in ethylene production rate was not linked to variability in elongation rate. Our results thus suggest that neither ABA nor ethylene seems to play a major role in the control of leaf elongation response to soil water deficit.
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95
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Maggio A, Zhu JK, Hasegawa PM, Bressan RA. Osmogenetics: Aristotle to Arabidopsis. THE PLANT CELL 2006; 18:1542-57. [PMID: 16809814 PMCID: PMC1488915 DOI: 10.1105/tpc.105.040501] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Affiliation(s)
- Albino Maggio
- Department of Agricultural Engineering and Agronomy, University of Naples Federico II, Portici, Italy 80055
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96
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Zhu J, Chen S, Alvarez S, Asirvatham VS, Schachtman DP, Wu Y, Sharp RE. Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water-soluble and lightly ionically bound proteins. PLANT PHYSIOLOGY 2006; 140:311-25. [PMID: 16377746 PMCID: PMC1326053 DOI: 10.1104/pp.105.070219] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2005] [Revised: 10/04/2005] [Accepted: 11/07/2005] [Indexed: 05/05/2023]
Abstract
Cell wall proteins (CWPs) play important roles in various processes, including cell elongation. However, relatively little is known about the composition of CWPs in growing regions. We are using a proteomics approach to gain a comprehensive understanding of the identity of CWPs in the maize (Zea mays) primary root elongation zone. As the first step, we examined the effectiveness of a vacuum infiltration-centrifugation technique for extracting water-soluble and loosely ionically bound (fraction 1) CWPs from the root elongation zone. The purity of the CWP extract was evaluated by comparing with total soluble proteins extracted from homogenized tissue. Several lines of evidence indicated that the vacuum infiltration-centrifugation technique effectively enriched for CWPs. Protein identification revealed that 84% of the CWPs were different from the total soluble proteins. About 40% of the fraction 1 CWPs had traditional signal peptides and 33% were predicted to be nonclassical secretory proteins, whereas only 3% and 11%, respectively, of the total soluble proteins were in these categories. Many of the CWPs have previously been shown to be involved in cell wall metabolism and cell elongation. In addition, maize has type II cell walls, and several of the CWPs identified in this study have not been identified in previous cell wall proteomics studies that have focused only on type I walls. These proteins include endo-1,3;1,4-beta-D-glucanase and alpha-L-arabinofuranosidase, which act on the major polysaccharides only or mainly present in type II cell walls.
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Affiliation(s)
- Jinming Zhu
- Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA
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97
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Shimazaki Y, Ookawa T, Hirasawa T. The root tip and accelerating region suppress elongation of the decelerating region without any effects on cell turgor in primary roots of maize under water stress. PLANT PHYSIOLOGY 2005; 139:458-65. [PMID: 16100358 PMCID: PMC1203394 DOI: 10.1104/pp.105.062091] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
To identify the region in which a root perceives a decrease in the ambient water potential and changes its elongation rate, we applied two agar blocks (1 x 1 x 1 mm(3)) with low water potential bilaterally to primary roots of maize (Zea mays) at various positions along the root. When agar blocks with a water potential of -1.60 MPa (-1.60-MPa blocks) or lower were attached to a root tip, the rate of elongation decreased. This decrease did not result from any changes in the water status of elongating cells and was not reversed when the -1.60-MPa blocks were replaced by -0.03-MPa blocks. The rate decreased slightly and was unaffected, respectively, when -1.60-MPa blocks were applied to the so-called decelerating region of the elongating zone and the mature region. However, the rate decreased markedly and did not recover for several hours at least when such blocks were attached to the accelerating region. In this case, the turgor pressure of the elongating cells decreased immediately after the application of the blocks and recovered thereafter. The decrease in elongation rate caused by -1.60-MPa blocks applied to the root tip was unaffected by additional -0.03-MPa blocks applied to the accelerating region and vice versa. We concluded that a significant reduction in root growth could be induced by water stress at the root tip, as well as in the accelerating region of the elongating zone, and that transmission of some signal from these regions to the decelerating region might contribute to the suppression of cell elongation in the elongation region.
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Affiliation(s)
- Yumi Shimazaki
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan
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98
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KAHMEN A, PERNER J, BUCHMANN N. Diversity-dependent productivity in semi-natural grasslands following climate perturbations. Funct Ecol 2005. [DOI: 10.1111/j.1365-2435.2005.01001.x] [Citation(s) in RCA: 187] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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99
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Barrero JM, Piqueras P, González-Guzmán M, Serrano R, Rodríguez PL, Ponce MR, Micol JL. A mutational analysis of the ABA1 gene of Arabidopsis thaliana highlights the involvement of ABA in vegetative development. JOURNAL OF EXPERIMENTAL BOTANY 2005; 56:2071-83. [PMID: 15983017 DOI: 10.1093/jxb/eri206] [Citation(s) in RCA: 123] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Much of the literature on the phytohormone abscisic acid (ABA) describes it as a mediator in triggering plant responses to environmental stimuli, as well as a growth inhibitor. ABA-deficient mutants, however, display a stunted phenotype even under well-watered conditions and high relative humidity, which suggests that growth promotion may also be one of the roles of endogenous ABA. Zeaxanthin epoxidase, the product of the ABA1 gene of Arabidopsis thaliana, catalyses the epoxidation of zeaxanthin to antheraxanthin and violaxanthin, generating the epoxycarotenoid precursor of the ABA biosynthetic pathway. This paper gives a description of the molecular and phenotypic characterization of a large series of mutant alleles of the ABA1 gene, which cause different degrees of ABA deficiency, four of them previously isolated (aba1-1, aba1-3, aba1-4, and aba1-6) and the remaining five novel (sañ1-1, sañ1-2, sañ1-3, sañ1-4, and sre3). Molecular analysis of these alleles provides insights into the domains in which they compromise zeaxanthin epoxidase function. The size of the leaves, inflorescences, and flowers of these mutants is reduced, and their rosettes have lower fresh and dry weights than their wild types, as a result of a diminished cell size. Low concentrations of exogenous ABA increase the fresh weight of mutant and wild-type plants, as well as the dry weight of the mutants. The leaves of aba1 mutants are abnormally shaped and fail to develop clearly distinct spongy and palisade mesophyll layers. Taken together, these phenotypic traits indicate, as suggested by previous authors, that ABA acts as a growth promoter during vegetative development. The abnormal shape and internal structure of the leaves of aba1 mutants suggests, in addition, a role for ABA in organogenesis.
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Affiliation(s)
- José María Barrero
- División de Genética and Instituto de Bioingeniería, Universidad Miguel Hernández, Campus de Elche, 03202 Elche, Alicante, Spain
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100
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Poroyko V, Hejlek LG, Spollen WG, Springer GK, Nguyen HT, Sharp RE, Bohnert HJ. The maize root transcriptome by serial analysis of gene expression. PLANT PHYSIOLOGY 2005; 138:1700-10. [PMID: 15965024 PMCID: PMC1176439 DOI: 10.1104/pp.104.057638] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Serial Analysis of Gene Expression was used to define number and relative abundance of transcripts in the root tip of well-watered maize seedlings (Zea mays cv FR697). In total, 161,320 tags represented a minimum of 14,850 genes, based on at least two tags detected per transcript. The root transcriptome has been sampled to an estimated copy number of approximately five transcripts per cell. An extrapolation from the data and testing of single-tag identifiers by reverse transcription-PCR indicated that the maize root transcriptome should amount to at least 22,000 expressed genes. Frequency ranged from low copy number (2-5, 68.8%) to highly abundant transcripts (100-->1,200; 1%). Quantitative reverse transcription-PCR for selected transcripts indicated high correlation with tag frequency. Computational analysis compared this set with known maize transcripts and other root transcriptome models. Among the 14,850 tags, 7,010 (47%) were found for which no maize cDNA or gene model existed. Comparing the maize root transcriptome with that in other plants indicated that highly expressed transcripts differed substantially; less than 5% of the most abundant transcripts were shared between maize and Arabidopsis (Arabidopsis thaliana). Transcript categories highlight functions of the maize root tip. Significant variation in abundance characterizes transcripts derived from isoforms of individual enzymes in biochemical pathways.
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Affiliation(s)
- V Poroyko
- Department of Plant Biology , University of Illinois, Urbana, Illinois 61801, USA
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