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Number Cited by Other Article(s)
51
Yang Y, Wang Z. IRES-mediated cap-independent translation, a path leading to hidden proteome. J Mol Cell Biol 2019;11:911-919. [PMID: 31504667 PMCID: PMC6884710 DOI: 10.1093/jmcb/mjz091] [Citation(s) in RCA: 122] [Impact Index Per Article: 24.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 07/05/2019] [Accepted: 07/18/2019] [Indexed: 01/06/2023]  Open
52
Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings. Proteomics 2019;19:e1900199. [DOI: 10.1002/pmic.201900199] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 07/25/2019] [Indexed: 01/24/2023]
53
Jiang J, Xing F, Wang C, Zeng X, Zou Q. Investigation and development of maize fused network analysis with multi-omics. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019;141:380-387. [PMID: 31220804 DOI: 10.1016/j.plaphy.2019.06.016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 06/12/2019] [Accepted: 06/12/2019] [Indexed: 05/19/2023]
54
Ye X, Tang X, Wang X, Che J, Wu M, Liang J, Ye L, Qian Q, Li J, You Z, Zhang Y, Wang S, Zhong B. Improving Silkworm Genome Annotation Using a Proteogenomics Approach. J Proteome Res 2019;18:3009-3019. [PMID: 31250652 DOI: 10.1021/acs.jproteome.8b00965] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
55
Quiroga G, Erice G, Ding L, Chaumont F, Aroca R, Ruiz-Lozano JM. The arbuscular mycorrhizal symbiosis regulates aquaporins activity and improves root cell water permeability in maize plants subjected to water stress. PLANT, CELL & ENVIRONMENT 2019;42:2274-2290. [PMID: 30916398 DOI: 10.1111/pce.13551] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 02/25/2019] [Accepted: 03/22/2019] [Indexed: 05/20/2023]
56
Machado KCT, Fortuin S, Tomazella GG, Fonseca AF, Warren RM, Wiker HG, de Souza SJ, de Souza GA. On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics. Front Microbiol 2019;10:1410. [PMID: 31281302 PMCID: PMC6596428 DOI: 10.3389/fmicb.2019.01410] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 06/05/2019] [Indexed: 01/19/2023]  Open
57
Chaudhary S, Jabre I, Reddy ASN, Staiger D, Syed NH. Perspective on Alternative Splicing and Proteome Complexity in Plants. TRENDS IN PLANT SCIENCE 2019;24:496-506. [PMID: 30852095 DOI: 10.1016/j.tplants.2019.02.006] [Citation(s) in RCA: 76] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 01/28/2019] [Accepted: 02/08/2019] [Indexed: 05/02/2023]
58
Al-Mohanna T, Ahsan N, Bokros NT, Dimlioglu G, Reddy KR, Shankle M, Popescu GV, Popescu SC. Proteomics and Proteogenomics Analysis of Sweetpotato (Ipomoea batatas) Leaf and Root. J Proteome Res 2019;18:2719-2734. [DOI: 10.1021/acs.jproteome.8b00943] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
59
Millar AH, Heazlewood JL, Giglione C, Holdsworth MJ, Bachmair A, Schulze WX. The Scope, Functions, and Dynamics of Posttranslational Protein Modifications. ANNUAL REVIEW OF PLANT BIOLOGY 2019;70:119-151. [PMID: 30786234 DOI: 10.1146/annurev-arplant-050718-100211] [Citation(s) in RCA: 140] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
60
Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall‐Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM. Directions for research and training in plant omics: Big Questions and Big Data. PLANT DIRECT 2019;3:e00133. [PMID: 31245771 PMCID: PMC6589541 DOI: 10.1002/pld3.133] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 03/21/2019] [Indexed: 05/04/2023]
61
Chen Y, Hoehenwarter W. Rapid and reproducible phosphopeptide enrichment by tandem metal oxide affinity chromatography: application to boron deficiency induced phosphoproteomics. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;98:370-384. [PMID: 30589143 DOI: 10.1111/tpj.14215] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 12/12/2018] [Accepted: 12/17/2018] [Indexed: 06/09/2023]
62
Lewandowska D, Zhang R, Colas I, Uzrek N, Waugh R. Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers. FRONTIERS IN PLANT SCIENCE 2019;10:393. [PMID: 31001307 PMCID: PMC6454111 DOI: 10.3389/fpls.2019.00393] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 03/14/2019] [Indexed: 05/02/2023]
63
Assis R. Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication. Genome Biol Evol 2019;11:207-219. [PMID: 30398650 PMCID: PMC6331041 DOI: 10.1093/gbe/evy245] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/03/2018] [Indexed: 02/02/2023]  Open
64
Goldenkova-Pavlova IV, Pavlenko OS, Mustafaev ON, Deyneko IV, Kabardaeva KV, Tyurin AA. Computational and Experimental Tools to Monitor the Changes in Translation Efficiency of Plant mRNA on a Genome-Wide Scale: Advantages, Limitations, and Solutions. Int J Mol Sci 2018;20:E33. [PMID: 30577638 PMCID: PMC6337405 DOI: 10.3390/ijms20010033] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Revised: 12/17/2018] [Accepted: 12/19/2018] [Indexed: 02/06/2023]  Open
65
Mata CI, Fabre B, Parsons HT, Hertog MLATM, Van Raemdonck G, Baggerman G, Van de Poel B, Lilley KS, Nicolaï BM. Ethylene Receptors, CTRs and EIN2 Target Protein Identification and Quantification Through Parallel Reaction Monitoring During Tomato Fruit Ripening. FRONTIERS IN PLANT SCIENCE 2018;9:1626. [PMID: 30467512 PMCID: PMC6235968 DOI: 10.3389/fpls.2018.01626] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Accepted: 10/18/2018] [Indexed: 05/18/2023]
66
Kim BY, Huber CD, Lohmueller KE. Deleterious variation shapes the genomic landscape of introgression. PLoS Genet 2018;14:e1007741. [PMID: 30346959 PMCID: PMC6233928 DOI: 10.1371/journal.pgen.1007741] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Revised: 11/13/2018] [Accepted: 10/05/2018] [Indexed: 11/19/2022]  Open
67
Biology in Bloom: A Primer on the Arabidopsis thaliana Model System. Genetics 2018;208:1337-1349. [PMID: 29618591 DOI: 10.1534/genetics.118.300755] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 01/23/2018] [Indexed: 12/13/2022]  Open
68
Yahyazadeh M, Meinen R, Hänsch R, Abouzeid S, Selmar D. Impact of drought and salt stress on the biosynthesis of alkaloids in Chelidonium majus L. PHYTOCHEMISTRY 2018;152:204-212. [PMID: 29783187 DOI: 10.1016/j.phytochem.2018.05.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Revised: 05/07/2018] [Accepted: 05/10/2018] [Indexed: 05/24/2023]
69
Proteomic analysis and food-grade enzymes of Moringa oleifer Lam. a Lam. flower. Int J Biol Macromol 2018;115:883-890. [DOI: 10.1016/j.ijbiomac.2018.04.109] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 02/28/2018] [Accepted: 04/21/2018] [Indexed: 01/28/2023]
70
Chin CF, Tan HS. The Use of Proteomic Tools to Address Challenges Faced in Clonal Propagation of Tropical Crops through Somatic Embryogenesis. Proteomes 2018;6:proteomes6020021. [PMID: 29734680 PMCID: PMC6027288 DOI: 10.3390/proteomes6020021] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Revised: 04/25/2018] [Accepted: 04/28/2018] [Indexed: 12/16/2022]  Open
71
Sample Preparation for Analysis of the Plant Mitochondrial Membrane Proteome. Methods Mol Biol 2018;1696:163-183. [PMID: 29086403 DOI: 10.1007/978-1-4939-7411-5_11] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
72
Proteomics in Systems Biology. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2018;1102:31-49. [DOI: 10.1007/978-3-319-98758-3_3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
73
Baudisch B, Pfort I, Sorge E, Conrad U. Nanobody-Directed Specific Degradation of Proteins by the 26S-Proteasome in Plants. FRONTIERS IN PLANT SCIENCE 2018;9:130. [PMID: 29479361 PMCID: PMC5811635 DOI: 10.3389/fpls.2018.00130] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 01/23/2018] [Indexed: 05/18/2023]
74
Nintemann SJ, Vik D, Svozil J, Bak M, Baerenfaller K, Burow M, Halkier BA. Unravelling Protein-Protein Interaction Networks Linked to Aliphatic and Indole Glucosinolate Biosynthetic Pathways in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2017;8:2028. [PMID: 29238354 PMCID: PMC5712850 DOI: 10.3389/fpls.2017.02028] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Accepted: 11/14/2017] [Indexed: 05/20/2023]
75
Cohen E, Zafrir Z, Tuller T. A code for transcription elongation speed. RNA Biol 2017;15:81-94. [PMID: 29165040 DOI: 10.1080/15476286.2017.1384118] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]  Open
76
Menschaert G, David F. Proteogenomics from a bioinformatics angle: A growing field. MASS SPECTROMETRY REVIEWS 2017;36:584-599. [PMID: 26670565 PMCID: PMC6101030 DOI: 10.1002/mas.21483] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 09/01/2015] [Indexed: 05/16/2023]
77
A Cautionary Tale on the Inclusion of Variable Posttranslational Modifications in Database-Dependent Searches of Mass Spectrometry Data. Methods Enzymol 2017;586:433-452. [PMID: 28137575 DOI: 10.1016/bs.mie.2016.11.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
78
Investigating the Role of the Photorespiratory Pathway in Non-photosynthetic Tissues. Methods Mol Biol 2017. [PMID: 28822136 DOI: 10.1007/978-1-4939-7225-8_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
79
Zhu Y, Engström PG, Tellgren-Roth C, Baudo CD, Kennell JC, Sun S, Billmyre RB, Schröder MS, Andersson A, Holm T, Sigurgeirsson B, Wu G, Sankaranarayanan SR, Siddharthan R, Sanyal K, Lundeberg J, Nystedt B, Boekhout T, Dawson TL, Heitman J, Scheynius A, Lehtiö J. Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis. Nucleic Acids Res 2017;45:2629-2643. [PMID: 28100699 PMCID: PMC5389616 DOI: 10.1093/nar/gkx006] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Accepted: 01/16/2017] [Indexed: 11/23/2022]  Open
80
Aryal UK, McBride Z, Chen D, Xie J, Szymanski DB. Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. J Proteomics 2017. [DOI: 10.1016/j.jprot.2017.06.004] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
81
Chen R, Chen G, Huang J. Shot-gun proteome and transcriptome mapping of the jujube floral organ and identification of a pollen-specific S-locus F-box gene. PeerJ 2017;5:e3588. [PMID: 28729959 PMCID: PMC5516771 DOI: 10.7717/peerj.3588] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 06/27/2017] [Indexed: 12/13/2022]  Open
82
Cotinguiba F, López SN, Budzinski IGF, Labate CA, Kato MJ, Furlan M. Proteomic profile of Piper tuberculatum (Piperaceae). BRAZ J BIOL 2017;78:117-124. [DOI: 10.1590/1519-6984.07816] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2016] [Accepted: 09/11/2016] [Indexed: 11/21/2022]  Open
83
Sweetlove LJ, Nielsen J, Fernie AR. Engineering central metabolism - a grand challenge for plant biologists. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;90:749-763. [PMID: 28004455 DOI: 10.1111/tpj.13464] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2016] [Revised: 12/14/2016] [Accepted: 12/15/2016] [Indexed: 06/06/2023]
84
Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR. Methods, Tools and Current Perspectives in Proteogenomics. Mol Cell Proteomics 2017;16:959-981. [PMID: 28456751 DOI: 10.1074/mcp.mr117.000024] [Citation(s) in RCA: 95] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Indexed: 12/20/2022]  Open
85
Willems P, Ndah E, Jonckheere V, Stael S, Sticker A, Martens L, Van Breusegem F, Gevaert K, Van Damme P. N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana. Mol Cell Proteomics 2017;16:1064-1080. [PMID: 28432195 PMCID: PMC5461538 DOI: 10.1074/mcp.m116.066662] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Revised: 04/11/2017] [Indexed: 01/05/2023]  Open
86
Bai B, Peviani A, van der Horst S, Gamm M, Snel ‎B, Bentsink L, Hanson J. Extensive translational regulation during seed germination revealed by polysomal profiling. THE NEW PHYTOLOGIST 2017;214:233-244. [PMID: 27935038 PMCID: PMC5347915 DOI: 10.1111/nph.14355] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 10/25/2016] [Indexed: 05/18/2023]
87
Szymanski J, Levin Y, Savidor A, Breitel D, Chappell-Maor L, Heinig U, Töpfer N, Aharoni A. Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;90:396-417. [PMID: 28112434 DOI: 10.1111/tpj.13490] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2016] [Revised: 01/13/2017] [Accepted: 01/16/2017] [Indexed: 05/18/2023]
88
Sergeant K, Printz B, Gutsch A, Behr M, Renaut J, Hausman JF. Didehydrophenylalanine, an abundant modification in the beta subunit of plant polygalacturonases. PLoS One 2017;12:e0171990. [PMID: 28207764 PMCID: PMC5313189 DOI: 10.1371/journal.pone.0171990] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Accepted: 01/30/2017] [Indexed: 01/07/2023]  Open
89
Li L, Nelson C, Fenske R, Trösch J, Pružinská A, Millar AH, Huang S. Changes in specific protein degradation rates in Arabidopsis thaliana reveal multiple roles of Lon1 in mitochondrial protein homeostasis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;89:458-471. [PMID: 27726214 DOI: 10.1111/tpj.13392] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Revised: 09/29/2016] [Accepted: 10/03/2016] [Indexed: 05/20/2023]
90
Duncan O, Trösch J, Fenske R, Taylor NL, Millar AH. Resource: Mapping the Triticum aestivum proteome. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;89:601-616. [PMID: 27775198 DOI: 10.1111/tpj.13402] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Revised: 10/12/2016] [Accepted: 10/14/2016] [Indexed: 05/22/2023]
91
Smoly I, Shemesh N, Ziv-Ukelson M, Ben-Zvi A, Yeger-Lotem E. An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. PLoS Comput Biol 2017;13:e1005221. [PMID: 28135269 PMCID: PMC5279721 DOI: 10.1371/journal.pcbi.1005221] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Accepted: 10/24/2016] [Indexed: 12/22/2022]  Open
92
Mahalingam R. Shotgun proteomics of the barley seed proteome. BMC Genomics 2017;18:44. [PMID: 28061743 PMCID: PMC5219712 DOI: 10.1186/s12864-016-3408-5] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2016] [Accepted: 12/09/2016] [Indexed: 12/29/2022]  Open
93
Grossmann J, Fernández H, Chaubey PM, Valdés AE, Gagliardini V, Cañal MJ, Russo G, Grossniklaus U. Proteogenomic Analysis Greatly Expands the Identification of Proteins Related to Reproduction in the Apogamous Fern Dryopteris affinis ssp. affinis. FRONTIERS IN PLANT SCIENCE 2017;8:336. [PMID: 28382042 PMCID: PMC5360702 DOI: 10.3389/fpls.2017.00336] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Accepted: 02/27/2017] [Indexed: 05/19/2023]
94
Zur H, Tuller T. Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution. Nucleic Acids Res 2016;44:9031-9049. [PMID: 27591251 PMCID: PMC5100582 DOI: 10.1093/nar/gkw764] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 08/19/2016] [Indexed: 12/12/2022]  Open
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Laxa M, Müller K, Lange N, Doering L, Pruscha JT, Peterhänsel C. The 5'UTR Intron of Arabidopsis GGT1 Aminotransferase Enhances Promoter Activity by Recruiting RNA Polymerase II. PLANT PHYSIOLOGY 2016;172:313-27. [PMID: 27418588 PMCID: PMC5074633 DOI: 10.1104/pp.16.00881] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 07/07/2016] [Indexed: 05/19/2023]
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Lecampion C, Floris M, Fantino JR, Robaglia C, Laloi C. An Easy Method for Plant Polysome Profiling. J Vis Exp 2016. [PMID: 27684295 DOI: 10.3791/54231] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]  Open
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Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. Integration of omic networks in a developmental atlas of maize. Science 2016;353:814-8. [PMID: 27540173 DOI: 10.1126/science.aag1125] [Citation(s) in RCA: 296] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Accepted: 07/25/2016] [Indexed: 12/23/2022]
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Cabrera-Quio LE, Herberg S, Pauli A. Decoding sORF translation - from small proteins to gene regulation. RNA Biol 2016;13:1051-1059. [PMID: 27653973 DOI: 10.1080/15476286.2016.1218589] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
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He L, Ma X, Li Z, Jiao Z, Li Y, Ow DW. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. PLANT PHYSIOLOGY 2016;171:1675-85. [PMID: 27208260 PMCID: PMC4936553 DOI: 10.1104/pp.16.00220] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Accepted: 05/14/2016] [Indexed: 05/04/2023]
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Proteomic and functional analysis of proline dehydrogenase 1 link proline catabolism to mitochondrial electron transport in Arabidopsis thaliana. Biochem J 2016;473:2623-34. [PMID: 27303048 DOI: 10.1042/bcj20160314] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 06/14/2016] [Indexed: 11/17/2022]
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