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Integrated use of treated dairy wastewater and agro-residue for Agaricus bisporus mushroom cultivation: Experimental and kinetics studies. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.101940] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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102
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Feijóo-Vivas K, Bermúdez-Puga SA, Rebolledo H, Figueroa JM, Zamora P, Naranjo-Briceño L. Bioproductos desarrollados a partir de micelio de hongos: Una nueva cultura material y su impacto en la transición hacia una economía sostenible. BIONATURA 2021. [DOI: 10.21931/rb/2021.06.01.29] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
El biodiseño y biofabricación de biomateriales a partir de residuos vegetales lignocelulósicos y auto-generados por el micelio de hongos es un campo de investigación emergente desde las últimas dos décadas. Surge una nueva cultura material que se basa en los nuevos paradigmas de la fabricación alternativa partiendo de la lógica “de hacer crecer los nuevos materiales en lugar de extraerlos” e integrando los principios básicos de la economía circular y de la Biotecnología Material, asegurando la susceptibilidad de los mismos a ser biodegradados y volver a su estado original en la naturaleza. Su implementación a nivel industrial en distintas áreas de la manufactura comienza a competir con el cuero de origen animal, materiales y productos de origen petroquímico, a la vez que promueve nuevas alternativas de alimentos proteicos sustentables que contribuyan al cambio de los patrones de consumo humano de alto impacto ambiental arraigados a nivel global. La presente revisión, aborda una mirada particular que va desde lo molecular a lo global sobre la nueva cultura micelial, considerando aspectos generales del reino Fungi, la morfogénesis, composición química e integridad celular del micelio, los sistemas multienzimáticos extracelulares de degradación de lignocelulosa que poseen los hongos, pasando por los principales sustratos empleados, los biomateriales desarrollados a partir de micelio a nivel industrial, destacando los biotextiles, materiales y productos para el empaquetamiento y aislamiento, nuevas fuentes alimentarias basadas en el micelio, el arte y el diseño arquitectónico. Finalmente, se presenta el estado del arte actual de las empresas o laboratorios vanguardistas que suscitan una economía circular basada en el micelio de hongos a nivel mundial, al reemplazar recursos y productos de origen fósil por materiales amigables con el entorno, generando alternativas sostenibles y ciclos de producción con una baja demanda de energía y sin repercusiones al medio ambiente, es decir, promoviendo una nueva conciencia material.
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Affiliation(s)
- Kevin Feijóo-Vivas
- Facultad de Ciencias de la Vida, Ingeniería en Biotecnología. Universidad Regional Amazónica Ikiam, vía Muyuna, km. 7, CP 150150, Tena, Ecuador
| | - Stalin A. Bermúdez-Puga
- Facultad de Ciencias de la Vida, Ingeniería en Biotecnología. Universidad Regional Amazónica Ikiam, vía Muyuna, km. 7, CP 150150, Tena, Ecuador
| | - Hernán Rebolledo
- Spora Biotech, Fundo Santa Paulina, Rosario, Rengo, VI Región del General Libertador Bernardo O’Higgins, CP 2940000, Chile
| | - José Miguel Figueroa
- Spora Biotech, Fundo Santa Paulina, Rosario, Rengo, VI Región del General Libertador Bernardo O’Higgins, CP 2940000, Chile
| | - Pablo Zamora
- 3Spora Biotech, Fundo Santa Paulina, Rosario, Rengo, VI Región del General Libertador Bernardo O’Higgins, CP 2940000, Chile. 4Vincula S&C, Las Condes, Región Metropolitana, Chile
| | - Leopoldo Naranjo-Briceño
- 1Facultad de Ciencias de la Vida, Ingeniería en Biotecnología. Universidad Regional Amazónica Ikiam, vía Muyuna, km. 7, CP 150150, Tena, Ecuador. 2Grupo de Microbiología Aplicada, Universidad Regional Amazónica Ikiam, vía Muyuna, km. 7, CP 150150, Tena, Ecuador. 3Spora Biotech, Fundo Santa Paulina, Rosario, Rengo, VI Región del General Libertador Bernardo O’Higgins, CP 2940000, Chile
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103
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Pérez-Montes A, Rangel-Vargas E, Lorenzo JM, Romero L, Santos EM. Edible mushrooms as a novel trend in the development of healthier meat products. Curr Opin Food Sci 2021. [DOI: 10.1016/j.cofs.2020.10.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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104
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Wang T, Yue S, Jin Y, Wei H, Lu L. Advances allowing feasible pyrG gene editing by a CRISPR-Cas9 system for the edible mushroom Pleurotus eryngii. Fungal Genet Biol 2021; 147:103509. [PMID: 33400990 DOI: 10.1016/j.fgb.2020.103509] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 12/24/2020] [Accepted: 12/27/2020] [Indexed: 10/22/2022]
Abstract
For decades, the edible mushroom Pleurotus eryngii (P. eryngii) has been cultivated as important raw materials for food and pharmaceutical industries in most of Asian countries, especially in China. Unfortunately, the generation and improvement of new cultivars are very difficult since there are many barriers which have not been solved thoroughly by gene editing tools, even though the CRISPR-Cas9 technique has been widely applied in other species. In this study, we identified the point-mutated variant of the endogenous sdhB gene (cbxr) as a more stable selection marker than hygromycin B resistance gene (hph) in P. eryngii. Furthermore, using a codon-optimized Cas9, a predicted native U6 promoter-guided sgRNA, as well as an optimized protoplast transformation system, a highly efficient pyrG gene editing system was established in P. eryngii, that incorporated varied insertions and deletions (indels) by non-homologous end joining (NHEJ) and homology-directed repair (HDR). Findings for a successful targeted gene editing strategy in the edible mushroom P. eryngii may open a new chapter for the improvement of edible mushroom cultivars.
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Affiliation(s)
- Tingli Wang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Shang Yue
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Yating Jin
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China
| | - Hua Wei
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
| | - Ling Lu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
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105
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Vos AM, Bleichrodt R, Herman KC, Ohm RA, Scholtmeijer K, Schmitt H, Lugones LG, Wösten HAB. Cycling in degradation of organic polymers and uptake of nutrients by a litter-degrading fungus. Environ Microbiol 2021; 23:224-238. [PMID: 33140552 PMCID: PMC7894533 DOI: 10.1111/1462-2920.15297] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 10/25/2020] [Accepted: 10/26/2020] [Indexed: 11/30/2022]
Abstract
Wood and litter degrading fungi are the main decomposers of lignocellulose and thus play a key role in carbon cycling in nature. Here, we provide evidence for a novel lignocellulose degradation strategy employed by the litter degrading fungus Agaricus bisporus (known as the white button mushroom). Fusion of hyphae allows this fungus to synchronize the activity of its mycelium over large distances (50 cm). The synchronized activity has a 13-h interval that increases to 20 h before becoming irregular and it is associated with a 3.5-fold increase in respiration, while compost temperature increases up to 2°C. Transcriptomic analysis of this burst-like phenomenon supports a cyclic degradation of lignin, deconstruction of (hemi-) cellulose and microbial cell wall polymers, and uptake of degradation products during vegetative growth of A. bisporus. Cycling in expression of the ligninolytic system, of enzymes involved in saccharification, and of proteins involved in nutrient uptake is proposed to provide an efficient way for degradation of substrates such as litter.
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Affiliation(s)
- Aurin M. Vos
- Microbiology, Department of BiologyUtrecht UniversityUtrechtthe Netherlands
- Wageningen Plant ResearchWageningen URWageningenthe Netherlands
| | | | - Koen C. Herman
- Microbiology, Department of BiologyUtrecht UniversityUtrechtthe Netherlands
| | - Robin A. Ohm
- Microbiology, Department of BiologyUtrecht UniversityUtrechtthe Netherlands
| | - Karin Scholtmeijer
- Plant BreedingWageningen University and ResearchWageningenthe Netherlands
| | - Heike Schmitt
- Institute for Risk Assessment SciencesUtrecht UniversityUtrechtthe Netherlands
| | - Luis G. Lugones
- Microbiology, Department of BiologyUtrecht UniversityUtrechtthe Netherlands
| | - Han A. B. Wösten
- Microbiology, Department of BiologyUtrecht UniversityUtrechtthe Netherlands
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106
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Fungal Laccases to Where and Where? Fungal Biol 2021. [DOI: 10.1007/978-3-030-85603-8_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
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107
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Ghosh S, Khatua S, Dasgupta A, Acharya K. Crude polysaccharide from the milky mushroom, Calocybe indica, modulates innate immunity of macrophage cells by triggering MyD88-dependent TLR4/NF-κB pathway. J Pharm Pharmacol 2020; 73:70-81. [PMID: 33791803 DOI: 10.1093/jpp/rgaa020] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 10/06/2020] [Indexed: 12/13/2022]
Abstract
OBJECTIVES Calocybe indica is a famous nutritious food in Asian countries and one of the most widely cultivated mushrooms in the world. Here, we have isolated crude polysaccharides from this mushroom, characterized it and investigated its antioxidant and immunostimulatory potential. METHODS The polysaccharide was chemically characterized by spectrophotometry, FTIR and high-performance thin layer chromatography and tested its antioxidant potential by in vitro assays. Immunomodulatory activity and its underlying signalling process were ascertained in RAW 264.7 cells. KEY FINDINGS The polysaccharide consisted of D-glucose (β-linked sugars), D-mannose and D-galactose, where backbone was organized in random coil structure. Preliminary investigation of the bioactivity of the polysaccharide revealed its antioxidant potential. The polysaccharide could noticeably induce phagocytic activity and production of immune mediators in macrophage cells. The polysaccharide was found to enhance the expression of pro-inflammatory cytokines and activate NF-κB signalling pathway by overexpressing MyD88, Iκ-Bα and NF-κB. Further studies indicated the polysaccharide binds to the toll-like receptor 4 to manifest its immunostimulatory activity in macrophage cells. CONCLUSIONS Our findings indicate potential therapeutic properties of the crude polysaccharide of C. indica which might provide the means to treat various radical induced and immunodeficiency disorders in the days to come.
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Affiliation(s)
- Sandipta Ghosh
- Molecular and Applied Mycology and Plant Pathology Laboratory, Center of Advanced Study, Department of Botany, University of Calcutta, Kolkata, India
| | - Somanjana Khatua
- Molecular and Applied Mycology and Plant Pathology Laboratory, Center of Advanced Study, Department of Botany, University of Calcutta, Kolkata, India
| | - Adhiraj Dasgupta
- Molecular and Applied Mycology and Plant Pathology Laboratory, Center of Advanced Study, Department of Botany, University of Calcutta, Kolkata, India
| | - Krishnendu Acharya
- Molecular and Applied Mycology and Plant Pathology Laboratory, Center of Advanced Study, Department of Botany, University of Calcutta, Kolkata, India
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108
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Carrasco J, García‐Delgado C, Lavega R, Tello ML, De Toro M, Barba‐Vicente V, Rodríguez‐Cruz MS, Sánchez‐Martín MJ, Pérez M, Preston GM. Holistic assessment of the microbiome dynamics in the substrates used for commercial champignon (Agaricus bisporus) cultivation. Microb Biotechnol 2020; 13:1933-1947. [PMID: 32716608 PMCID: PMC7533343 DOI: 10.1111/1751-7915.13639] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 07/09/2020] [Indexed: 11/30/2022] Open
Abstract
Microorganisms strongly influence and are required to generate the selective substrate that provides nutrients and support for fungal growth, and ultimately to induce mushroom fructification under controlled environmental conditions. In this work, the fungal and bacterial microbiota living in the different substrates employed in a commercial crop (compost phase I, II and III, flush 1 and 2, and casing material on day 1, 6 and 8 after compost casing and during flush 1 and 2) have been characterized along the different stages of cultivation by metataxonomic analysis (16S rRNA and ITS2), analysis of phospholipid fatty acid content (PLFAs) and RT-qPCR. Additionally, laccase activity and the content of lignin and complex carbohydrates in compost and casing have been quantified. The bacterial diversity in compost and casing increased throughout the crop cycle boosted by the connection of both substrates. As reflected by the PLFAs, the total living bacterial biomass appears to be negatively correlated with the mycelium of the crop. Agaricus bisporus was the dominant fungal species in colonized substrates, displacing the pre-eminent Ascomycota, accompanied by a sustained increase in laccase activity, which is considered to be a major product of protein synthesis during the mycelial growth of champignon. From phase II onwards, the metabolic machinery of the fungal crop degrades lignin and carbohydrates in compost, while these components are hardly degraded in casing, which reflects the minor role of the casing for nourishing the crop. The techniques employed in this study provide a holistic and detailed characterization of the changing microbial composition in commercial champignon substrates. The knowledge generated will contribute to improve compost formulations (selection of base materials) and accelerate compost production, for instance, through biotechnological interventions in the form of tailored biostimulants and to design environmentally sustainable bio-based casing materials.
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Affiliation(s)
- Jaime Carrasco
- Department of Plant SciencesUniversity of OxfordS Parks RdOxfordOX1 3RBUK
- Centro Tecnológico de Investigación del Champiñón de La Rioja (CTICH)AutolSpain
| | - Carlos García‐Delgado
- Departamento de Geología y GeoquímicaUniversidad Autónoma de MadridMadridSpain
- Institute of Natural Resources and Agrobiology of Salamanca (IRNASA‐CSIC)SalamancaSpain
| | - Rebeca Lavega
- Centro Tecnológico de Investigación del Champiñón de La Rioja (CTICH)AutolSpain
| | - María L. Tello
- Centro Tecnológico de Investigación del Champiñón de La Rioja (CTICH)AutolSpain
| | - María De Toro
- Plataforma de Genómica y BioinformáticaCentro de Investigación Biomédica de La Rioja (CIBIR)LogroñoSpain
| | - Víctor Barba‐Vicente
- Institute of Natural Resources and Agrobiology of Salamanca (IRNASA‐CSIC)SalamancaSpain
| | | | | | - Margarita Pérez
- Centro Tecnológico de Investigación del Champiñón de La Rioja (CTICH)AutolSpain
| | - Gail M. Preston
- Department of Plant SciencesUniversity of OxfordS Parks RdOxfordOX1 3RBUK
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109
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Zárate-Salazar JR, Santos MN, Caballero ENM, Martins OG, Herrera ÁAP. Use of lignocellulosic corn and rice wastes as substrates for oyster mushroom (Pleurotus ostreatus Jacq.) cultivation. SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-03720-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023] Open
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110
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Naim L, Alsanad MA, Shaban N, El Sebaaly Z, Abou Fayssal S, Sassine YN. Production and composition of Pleurotus ostreatus cultivated on Lithovit ®-Amino25 supplemented spent substrate. AMB Express 2020; 10:188. [PMID: 33084956 PMCID: PMC7578210 DOI: 10.1186/s13568-020-01124-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 10/10/2020] [Indexed: 01/02/2023] Open
Abstract
Supplementation of the spent oyster substrate enhances its nutritional properties to produce a new mushroom cropping cycle. The study investigated the potential of a nano-fertilizer (Lithovit®-Amino25) with an admixture of 25% L-amino acids on Pleurotus ostreatus production, proteins, and amino acid contents. The product applied at spawning (t1), after the first harvest (t2), and at both timings (t3), in two doses: 3 g/kg (C1) or 5 g/kg (C2). Compared with control (C0t0), the first harvest was earlier by 2.3-3.3 days in C1t1 and C2t1. The biological yield of the second harvest was improved by 28.0% in C2t2. Superior results were in C1t3 where the number of crops increased to four, biological efficiency was optimized (117.3%) at the third harvest, and biological and economic yields increased by 36.7% and 36.4%, respectively. Lignin was the most degraded in C1t3, while residual cellulose, hemicellulose, neutral detergent fiber, and acid detergent fiber were higher in all treated substrates than in control. In C2t1, mushrooms were the richest in proteins, while in C1t1, they were the richest in the essential amino acids threonine, valine, isoleucine, leucine, and histidine. Lithovit®-Amino25 has a high potential for use in P. ostreatus production.
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111
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Cortina-Escribano M, Pihlava JM, Miina J, Veteli P, Linnakoski R, Vanhanen H. Effect of Strain, Wood Substrate and Cold Treatment on the Yield and β-Glucan Content of Ganoderma lucidum Fruiting Bodies. Molecules 2020; 25:E4732. [PMID: 33076396 PMCID: PMC7587577 DOI: 10.3390/molecules25204732] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 10/08/2020] [Accepted: 10/14/2020] [Indexed: 11/16/2022] Open
Abstract
Wood residues from forestry industries can be potential raw materials for specialty and edible mushroom production. The aim of this study was to evaluate the suitability of wood residues for the cultivation of Ganoderma lucidum originating from boreal forests. The substrates tested included sawdust and wood chips of Betula spp., Populus tremula, Picea abies, Pinus sylvestris and Larix sp. The suitability of the substrates and the ability of the strains to develop fruiting bodies and produce β-glucan were evaluated. Fruiting body formation was supported by applying two different cold shock treatments to substrate bags. The highest yields were observed with MUS192 strain and Betula spp. and P. tremula wood-based substrates. β-Glucan content in the fruiting bodies was highest with the MUS75 and P. tremula wood-based substrate. Based on these findings, the combination of P. tremula wood residues and the MUS192 strain is proposed to enhance the yield and β-glucan content of the fruiting bodies. A cold treatment of 5 °C is suggested to induce primordia formation and to increase fruiting probability. This is the first time that strains of G. lucidum originating from boreal forests have been compared and successfully cultivated simulating commercial indoor cultivation.
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Affiliation(s)
- Marta Cortina-Escribano
- School of Forest Sciences, University of Eastern Finland, 80100 Joensuu, North Karelia, Finland
- Natural Resources Institute Finland (Luke), 80100 Joensuu, North Karelia, Finland; (J.M.); (H.V.)
| | - Juha-Matti Pihlava
- Natural Resources Institute Finland (Luke), 31600 Tavastia Proper, Jokioinen, Finland;
| | - Jari Miina
- Natural Resources Institute Finland (Luke), 80100 Joensuu, North Karelia, Finland; (J.M.); (H.V.)
| | - Pyry Veteli
- Natural Resources Institute Finland (Luke), 00790 Uusimaa, Helsinki, Finland; (P.V.); (R.L.)
| | - Riikka Linnakoski
- Natural Resources Institute Finland (Luke), 00790 Uusimaa, Helsinki, Finland; (P.V.); (R.L.)
| | - Henri Vanhanen
- Natural Resources Institute Finland (Luke), 80100 Joensuu, North Karelia, Finland; (J.M.); (H.V.)
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112
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Wei P, Li Y, Lai D, Geng L, Liu C, Zhang J, Shu C, Liu R. Protaetia brevitarsis larvae can feed on and convert spent mushroom substrate from Auricularia auricula and Lentinula edodes cultivation. WASTE MANAGEMENT (NEW YORK, N.Y.) 2020; 114:234-239. [PMID: 32682088 DOI: 10.1016/j.wasman.2020.07.009] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 05/19/2020] [Accepted: 07/06/2020] [Indexed: 06/11/2023]
Abstract
The edible mushroom industry produces massive amounts of spent mushroom substrate (SMS). Thus, there is an urgent need for high-value utilization technology to process the SMS, especially SMSs originating from woodchips. Protaetia brevitarsis larvae (PBL) can feed on various types of organic matter and can produce organic fertilizer and insect protein. In this study, we investigated the potential of PBL to utilize and convert SMSs from Auricularia auricula (SMS-AA) and Lentinula edodes (SMS-LE) cultivation. The results showed that the PBL were able to feed on SMS-AA and SMS-LE and form nutrient-enriched organic fertilizer with a low phytotoxicity and high humic acid content. Further analysis of the organic carbon dynamics suggested that PBL can efficiently digest and utilize lignin. This study demonstrates a new strategy for the utilization of SMSs originating from woodchips, and provides a new model for further investigations on the mechanism of lignin decomposition.
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Affiliation(s)
- Panpan Wei
- Northeast Agricultural University, No. 600 Changjiang Street Xiangfang District, HarBin 150030, China; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100193, China
| | - Yimei Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100193, China
| | - Deqiang Lai
- Cangzhou Academy of Agricultural and Forestry Sciences, Cangzhou 061001, China
| | - Lili Geng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100193, China
| | - Chunqin Liu
- Cangzhou Academy of Agricultural and Forestry Sciences, Cangzhou 061001, China
| | - Jie Zhang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100193, China
| | - Changlong Shu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100193, China.
| | - Rongmei Liu
- Northeast Agricultural University, No. 600 Changjiang Street Xiangfang District, HarBin 150030, China.
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113
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Fukushima-Sakuno E. Bioactive small secondary metabolites from the mushrooms Lentinula edodes and Flammulina velutipes. J Antibiot (Tokyo) 2020; 73:687-696. [PMID: 32733077 DOI: 10.1038/s41429-020-0354-x] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 06/17/2020] [Accepted: 06/30/2020] [Indexed: 01/29/2023]
Abstract
Mushrooms have been attracting attention as a source of bioactive compounds for the development of dietary supplements and medicines. Many researchers have reported pharmacological effects of edible mushrooms, and have isolated and identified bioactive substances. Lentinula edodes (shiitake) and Flammulina velutipes (enokitake) are the cultivated edible mushrooms that are popular throughout the world. In L. edodes, polyacetylenes and sulfur compounds have been shown to display antimicrobial activity. In F. velutipes, many types of bioactive terpenes have been reported from mycelium culture filtrate or solid culture substrate. This article reviews the bioactive metabolites of low-molecular weight from L. edodes and F. velutipes.
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Affiliation(s)
- Emi Fukushima-Sakuno
- The Tottori Mycological Institute, The Japan Kinoko Research Center Foundation, Tottori, Japan.
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114
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Elsacker E, Vandelook S, Van Wylick A, Ruytinx J, De Laet L, Peeters E. A comprehensive framework for the production of mycelium-based lignocellulosic composites. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 725:138431. [PMID: 32298897 DOI: 10.1016/j.scitotenv.2020.138431] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Revised: 04/01/2020] [Accepted: 04/02/2020] [Indexed: 06/11/2023]
Abstract
Environmental pollution and scarcity of natural resources lead to an increased interest in developing more sustainable materials. For example, the traditional construction industry, which is largely based on the extraction of fossil fuels and raw materials, is called into question. A solution can be found in biologically augmented materials that are made by growing mycelium-forming fungal microorganisms on natural fibres rich in cellulose, hemicellulose and lignin. In this way, organic waste streams, such as agricultural waste, are valorised while creating a material that is biodegradable at the end of its life cycle - a process that fits in the spirit of circular economy. Mycelium-based materials have properties that are promising for a wide range of applications, including the use as construction materials. Despite this promise, the applicability and the practicality of these materials are largely unexplored and moreover, individual studies use a wide range of different experimental approaches and non-standardized procedures. In this review, we critically evaluate existing data on the composition of mycelium-based materials and process variables with the aim of providing a comprehensive framework of the production process. The framework illustrates the many input factors during the production that have an impact on the final characteristics of the material, and the unique potential to deploy more tuneable levels in the fabrications process that can serve to prototype a diversity of new unprecedented applications. Furthermore, we determine the applicability of existing data and identify knowledge gaps. This framework is valuable in identifying standardized approaches for future studies and in informing the design and process of new applications of mycelium-based materials.
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Affiliation(s)
- Elise Elsacker
- Architectural Engineering Research Group, Department of Architectural Engineering, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
| | - Simon Vandelook
- Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Aurélie Van Wylick
- Architectural Engineering Research Group, Department of Architectural Engineering, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium; Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Joske Ruytinx
- Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Lars De Laet
- Architectural Engineering Research Group, Department of Architectural Engineering, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium
| | - Eveline Peeters
- Research Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.
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Xiaokang W, Lyng JG, Brunton NP, Cody L, Jacquier JC, Harrison SM, Papoutsis K. Monitoring the effect of different microwave extraction parameters on the recovery of polyphenols from shiitake mushrooms: Comparison with hot-water and organic-solvent extractions. ACTA ACUST UNITED AC 2020; 27:e00504. [PMID: 32685385 PMCID: PMC7358658 DOI: 10.1016/j.btre.2020.e00504] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 07/07/2020] [Accepted: 07/07/2020] [Indexed: 11/15/2022]
Abstract
MAE facilitates the extraction of phenols from mushrooms in short processing times. Three extraction methods were compared. Chlorogenic and caffeic acids were identified in the MAE extracts. SEM showed that all the extraction methods led to cell damage to varying extents.
The current study aimed to investigate the effect of different microwave-assisted extraction (MAE) parameters (i.e., particle size of the sample, solid-to-liquid ratio, microwave power, and extraction time) on the total phenolic content (TPC), antioxidant capacity (DPPH and CUPRAC), chlorogenic acid and caffeic acid contents of shiitake mushrooms. All the independent variables affected TPC and antioxidant capacity values. Only the sample particle size had no significant effect on phenolic acid contents. The highest TPC, DPPH, and CUPRAC values were obtained when a particle size of 1.75 mm, solid-to-liquid ratio of 1/40, microwave power of 600 W, and extraction time of 15 min were used. The extracts obtained by MAE were compared with those obtained after hot-water extraction (HWE) and organic-solvent extraction (OSE). Scanning electron microscopy (SEM) confirmed that MAE resulted in cell wall disruption which might be due to an increase in the pressure of the inner part of the cells.
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Affiliation(s)
- Wen Xiaokang
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - James G Lyng
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Nigel P Brunton
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Lydia Cody
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Jean-Christophe Jacquier
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Sabine M Harrison
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Konstantinos Papoutsis
- UCD School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland
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116
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Silva AR, Oludemi T, Costa C, Barros J, Ferreira I, Nunes J, Prieto MA, Simal-Gandara J, Barros L, Ferreira IC. Mushrooms bio-residues valorisation: Optimisation of ergosterol extraction using response surface methodology. FOOD AND BIOPRODUCTS PROCESSING 2020. [DOI: 10.1016/j.fbp.2020.04.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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117
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Kumla J, Suwannarach N, Sujarit K, Penkhrue W, Kakumyan P, Jatuwong K, Vadthanarat S, Lumyong S. Cultivation of Mushrooms and Their Lignocellulolytic Enzyme Production Through the Utilization of Agro-Industrial Waste. Molecules 2020; 25:molecules25122811. [PMID: 32570772 PMCID: PMC7355594 DOI: 10.3390/molecules25122811] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/13/2020] [Accepted: 06/15/2020] [Indexed: 12/18/2022] Open
Abstract
A large amount of agro-industrial waste is produced worldwide in various agricultural sectors and by different food industries. The disposal and burning of this waste have created major global environmental problems. Agro-industrial waste mainly consists of cellulose, hemicellulose and lignin, all of which are collectively defined as lignocellulosic materials. This waste can serve as a suitable substrate in the solid-state fermentation process involving mushrooms. Mushrooms degrade lignocellulosic substrates through lignocellulosic enzyme production and utilize the degraded products to produce their fruiting bodies. Therefore, mushroom cultivation can be considered a prominent biotechnological process for the reduction and valorization of agro-industrial waste. Such waste is generated as a result of the eco-friendly conversion of low-value by-products into new resources that can be used to produce value-added products. Here, we have produced a brief review of the current findings through an overview of recently published literature. This overview has focused on the use of agro-industrial waste as a growth substrate for mushroom cultivation and lignocellulolytic enzyme production.
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Affiliation(s)
- Jaturong Kumla
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Kanaporn Sujarit
- Division of Biology, Faculty of Science and Technology, Rajamangala University of Technology Thanyaburi, Thanyaburi, Pathumthani 12110, Thailand;
| | - Watsana Penkhrue
- School of Preclinic, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand;
- Center of Excellence in Microbial Technology for Agricultural Industry, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - Pattana Kakumyan
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Kritsana Jatuwong
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Santhiti Vadthanarat
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Saisamorn Lumyong
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
- Correspondence: ; Tel.: +668-1881-3658
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118
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Antunes F, Marçal S, Taofiq O, M. M. B. Morais A, Freitas AC, C. F. R. Ferreira I, Pintado M. Valorization of Mushroom By-Products as a Source of Value-Added Compounds and Potential Applications. Molecules 2020; 25:molecules25112672. [PMID: 32526879 PMCID: PMC7321189 DOI: 10.3390/molecules25112672] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 05/27/2020] [Accepted: 06/03/2020] [Indexed: 01/08/2023] Open
Abstract
Nowadays, the food sector is highly concerned with environmental issues and foreseen to develop strategies to reduce waste and losses resulting from activities developed in the food system. An approach is to increment added value to the agro-industrial wastes, which might provide economic growth and environmental protection, contributing to a circular economy. Mushroom by-products represent a disposal problem, but they are also promising sources of important compounds, which may be used due to their functional and nutritional properties. Research has been developed in different fields to obtain value added solutions for the by-products generated during mushroom production and processing. Bioactive compounds have been obtained and applied in the development of nutraceutical and pharmaceutical formulations. Additionally, other applications have been explored and include animal feed, fertilizer, bioremediation, energy production, bio-based materials, cosmetics and cosmeceuticals. The main purpose of this review is to highlight the relevant composition of mushroom by-products and discuss their potential as a source of functional compounds and other applications. Future research needs to explore pilot and industrial scale extraction methods to understand the technological feasibility and the economic sustainability of the bioactive compounds extraction and valorization towards different applications.
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Affiliation(s)
- Filipa Antunes
- CBQF–Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; (F.A.); (S.M.); (A.M.M.B.M.); (A.C.F.)
| | - Sara Marçal
- CBQF–Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; (F.A.); (S.M.); (A.M.M.B.M.); (A.C.F.)
| | - Oludemi Taofiq
- Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; (O.T.); (I.C.F.R.F.)
| | - Alcina M. M. B. Morais
- CBQF–Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; (F.A.); (S.M.); (A.M.M.B.M.); (A.C.F.)
| | - Ana Cristina Freitas
- CBQF–Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; (F.A.); (S.M.); (A.M.M.B.M.); (A.C.F.)
| | - Isabel C. F. R. Ferreira
- Centro de Investigação de Montanha (CIMO), Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal; (O.T.); (I.C.F.R.F.)
| | - Manuela Pintado
- CBQF–Centro de Biotecnologia e Química Fina–Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Diogo Botelho 1327, 4169-005 Porto, Portugal; (F.A.); (S.M.); (A.M.M.B.M.); (A.C.F.)
- Correspondence:
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Devi J, Deb U, Barman S, Das S, Sundar Bhattacharya S, Fai Tsang Y, Lee JH, Kim KH. Appraisal of lignocellusoic biomass degrading potential of three earthworm species using vermireactor mediated with spent mushroom substrate: Compost quality, crystallinity, and microbial community structural analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 716:135215. [PMID: 31837844 DOI: 10.1016/j.scitotenv.2019.135215] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2019] [Revised: 10/18/2019] [Accepted: 10/24/2019] [Indexed: 05/26/2023]
Abstract
Spent mushroom substrate (SMS) is a recalcitrant lignocellulosic waste. Recycling of SMS through composting has been reported; however, the process is lengthy due to its complex biochemical composition. Although vermitechnology is known for its high efficiency, it has rarely been applied to recycle SMS. In this study, the qualitative value of vermicomposted SMS mediated by three earthworm species (i.e., Eisenia fetida, Eudrilus eugeniae, and Perionyx excavatus) was evaluated on the basis of nutrient availability, microbial activity, phospholipid fatty acid (PLFA) profiles, and seed germination assays. Degradation profiles of the lignocellulosic substrate in the vermireactors were assessed by monitoring the changes in crystallinity and distribution of functional groups using X-ray diffraction (XRD) and Fourier transform infrared spectroscopy, respectively. Total organic carbon decreased by 1.4-3.5 folds with approximately 2.1-2.4 folds increase in nitrogen and phosphorus availability in all vermibeds. Interestingly, pH declined in the Eisenia and Eudrilus systems but increased in the Perionyx-vermibeds. XRD-derived crystallinity index was reduced significantly by 1.37 folds in Perionyx-vermicompost with concurrent microbial enrichment. Further, profuse abundance of vital functional groups (CO, NH, and OH) was clearly observed in the vermicompost with Perionyx followed by that with Eisenia. Moreover, PLFA illustrated significant variations in fatty acid distributions and microbial communities of the three vermicomposting systems. The seed germination assay showed that the germination index and relative root-shoot vigor of Perionyx-vermicompost treated seeds were 1.05-1.30 times greater than those of Eisenia and Eudrilus vermicompost treated ones. The results suggest that SMS degradability was affected by the growth of a healthy microbial community through vermicomposting.
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Affiliation(s)
- Jinnashri Devi
- Soil and Agro Bio-engineering Lab, Department of Environmental Science, Tezpur University, Tezpur 784 028, India
| | - Utsab Deb
- Defence Research Laboratory (DRDO), Tezpur, Assam, India
| | - Soma Barman
- Soil and Agro Bio-engineering Lab, Department of Environmental Science, Tezpur University, Tezpur 784 028, India
| | - Subhasish Das
- Soil and Agro Bio-engineering Lab, Department of Environmental Science, Tezpur University, Tezpur 784 028, India; Department of Environmental Science, Pachhunga University College, Mizoram University, Aizawl 796001, India
| | - Satya Sundar Bhattacharya
- Soil and Agro Bio-engineering Lab, Department of Environmental Science, Tezpur University, Tezpur 784 028, India.
| | - Yiu Fai Tsang
- Dept. of Science and Environmental Studies, The Education University of Hong Kong, Tai Po, New Territories, Hong Kong
| | - Jin-Hong Lee
- Department of Environmental Engineering, Chungnam National University, Daejon 34148, Republic of Korea
| | - Ki-Hyun Kim
- Dept. of Civil & Environmental Engineering, Hanyang University, 222 Wangsimni-Ro, Seoul 04763, South Korea.
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120
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Gong W, Wang Y, Xie C, Zhou Y, Zhu Z, Peng Y. Whole genome sequence of an edible and medicinal mushroom, Hericium erinaceus (Basidiomycota, Fungi). Genomics 2020; 112:2393-2399. [DOI: 10.1016/j.ygeno.2020.01.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Revised: 12/31/2019] [Accepted: 01/20/2020] [Indexed: 02/06/2023]
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121
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Economou CN, Philippoussis AN, Diamantopoulou PA. Spent mushroom substrate for a second cultivation cycle of Pleurotus mushrooms and dephenolization of agro-industrial wastewaters. FEMS Microbiol Lett 2020; 367:5817841. [DOI: 10.1093/femsle/fnaa060] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 04/03/2020] [Indexed: 11/13/2022] Open
Abstract
ABSTRACT
Spent mushroom substrate (SMS) of Pleurotus ostreatus was supplemented with wheat bran and soybean flour and used as substrate for a new cultivation cycle of the oyster mushrooms Pleurotus ostreatus and Pleurotus pulmonarius. The bioconversion efficiency of mushrooms produced over substrate (BE%) used and the chemical composition of sporophores were evaluated. The concentration of mycelial mass, crude exopolysaccharide content and laccase enzyme activity were also determined at the supplemented SMS before inoculation, at 50% and 100% of colonization stages in the new cultivation and in the final re-utilized SMS. The laccase enzyme was extracted to examine SMS potential for the dephenolization of olive mill and winery wastewaters. Results showed that both Pleurotus species exhibited BE over 185%, demonstrating this bioprocess could represent a promising strategy to convert SMS into nutritional food. Data also indicate the strong positive impact that SMS could have in the solid wastes’ management and agribusiness enhancement.
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Affiliation(s)
- Christina N Economou
- Laboratory of Edible Fungi, Institute of Technology of Agricultural Products, Hellenic Agricultural Organization – Demeter, 1 Sofokli Venizelou Street, GR-14123 Lykovryssi, Attiki, Greece
- Department of Chemical Engineering, University of Patras, Rio, GR-26504 Patras, Greece
| | - Antonios N Philippoussis
- Laboratory of Edible Fungi, Institute of Technology of Agricultural Products, Hellenic Agricultural Organization – Demeter, 1 Sofokli Venizelou Street, GR-14123 Lykovryssi, Attiki, Greece
| | - Panagiota A Diamantopoulou
- Laboratory of Edible Fungi, Institute of Technology of Agricultural Products, Hellenic Agricultural Organization – Demeter, 1 Sofokli Venizelou Street, GR-14123 Lykovryssi, Attiki, Greece
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122
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Meyer V, Basenko EY, Benz JP, Braus GH, Caddick MX, Csukai M, de Vries RP, Endy D, Frisvad JC, Gunde-Cimerman N, Haarmann T, Hadar Y, Hansen K, Johnson RI, Keller NP, Kraševec N, Mortensen UH, Perez R, Ram AFJ, Record E, Ross P, Shapaval V, Steiniger C, van den Brink H, van Munster J, Yarden O, Wösten HAB. Growing a circular economy with fungal biotechnology: a white paper. Fungal Biol Biotechnol 2020; 7:5. [PMID: 32280481 PMCID: PMC7140391 DOI: 10.1186/s40694-020-00095-z] [Citation(s) in RCA: 164] [Impact Index Per Article: 41.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 03/23/2020] [Indexed: 12/25/2022] Open
Abstract
Fungi have the ability to transform organic materials into a rich and diverse set of useful products and provide distinct opportunities for tackling the urgent challenges before all humans. Fungal biotechnology can advance the transition from our petroleum-based economy into a bio-based circular economy and has the ability to sustainably produce resilient sources of food, feed, chemicals, fuels, textiles, and materials for construction, automotive and transportation industries, for furniture and beyond. Fungal biotechnology offers solutions for securing, stabilizing and enhancing the food supply for a growing human population, while simultaneously lowering greenhouse gas emissions. Fungal biotechnology has, thus, the potential to make a significant contribution to climate change mitigation and meeting the United Nation’s sustainable development goals through the rational improvement of new and established fungal cell factories. The White Paper presented here is the result of the 2nd Think Tank meeting held by the EUROFUNG consortium in Berlin in October 2019. This paper highlights discussions on current opportunities and research challenges in fungal biotechnology and aims to inform scientists, educators, the general public, industrial stakeholders and policymakers about the current fungal biotech revolution.
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Affiliation(s)
- Vera Meyer
- 1Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | - Evelina Y Basenko
- 2Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool, UK
| | - J Philipp Benz
- 3TUM School of Life Sciences Weihenstephan, Technical University of Munich, Holzforschung München, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
| | - Gerhard H Braus
- 4Department of Molecular Microbiology & Genetics, Institute of Microbiology & Genetics, Georg-August-Universität Göttingen, Grisebachstr. 8, 37077 Göttingen, Germany
| | - Mark X Caddick
- 2Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool, UK
| | - Michael Csukai
- 5Syngenta, Jealott's Hill International Research Centre, Bracknell, Berkshire RG42 6EY UK
| | - Ronald P de Vries
- 6Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University Uppsalalaan 8, 3584 CT Utrecht, Netherlands
| | - Drew Endy
- 7Department of Bioengineering, Stanford University, 443 Via Ortega, Stanford, CA USA
| | - Jens C Frisvad
- 8Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Nina Gunde-Cimerman
- 9Department Biology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana, Slovenia
| | | | - Yitzhak Hadar
- 11Department of Plant Pathology and Microbiology, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, 76100 Rehovot, Israel
| | - Kim Hansen
- 12Biotechnology Research, Production Strain Technology, Novozymes A/S, Krogshoejvej 36, 2880 Bagsvaerd, Denmark
| | - Robert I Johnson
- 13Quorn Foods, Station Road, Stokesley, North Yorkshire TS9 7AB UK
| | - Nancy P Keller
- 14Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, 53706 USA
| | - Nada Kraševec
- 15Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova 19, SI-1000 Ljubljana, Slovenia
| | - Uffe H Mortensen
- 8Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Kongens Lyngby, Denmark
| | - Rolando Perez
- 7Department of Bioengineering, Stanford University, 443 Via Ortega, Stanford, CA USA
| | - Arthur F J Ram
- 16Institute of Biology Leiden, Molecular Microbiology and Biotechnology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands
| | - Eric Record
- 17French National Institute for Agriculture, Food and the Environment, INRAE, UMR1163, Biodiversité et Biotechnologie Fongiques, Aix-Marseille Université, Marseille, France
| | - Phil Ross
- MycoWorks, Inc, 669 Grand View Avenue, San Francisco, USA
| | - Volha Shapaval
- 19Faculty of Science and Technology, Norwegian University of Life Sciences, Droebakveien, 31 1430 Aas, Norway
| | - Charlotte Steiniger
- 1Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | | | - Jolanda van Munster
- 21The University of Manchester, Manchester Institute of Biotechnology (MIB) & School of Natural Sciences, 131 Princess Street, Manchester, M1 7DN UK
| | - Oded Yarden
- 11Department of Plant Pathology and Microbiology, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, 76100 Rehovot, Israel
| | - Han A B Wösten
- 22Department of Biology, Microbiology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
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Mayolo-Deloisa K, González-González M, Rito-Palomares M. Laccases in Food Industry: Bioprocessing, Potential Industrial and Biotechnological Applications. Front Bioeng Biotechnol 2020; 8:222. [PMID: 32266246 PMCID: PMC7105568 DOI: 10.3389/fbioe.2020.00222] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 03/05/2020] [Indexed: 01/31/2023] Open
Abstract
Laccase is a multi-copper oxidase that catalyzes the oxidation of one electron of a wide range of phenolic compounds. The enzyme is considered eco-friendly because it requires molecular oxygen as co-substrate for the catalysis and it yields water as the sole by-product. Laccase is commonly produced by fungi but also by some bacteria, insects and plants. Due it is capable of using a wide variety of phenolic and non-phenolic substrates, laccase has potential applications in the food, pharmaceutical and environmental industries; in addition, it has been used since many years in the bleaching of paper pulp. Fungal laccases are mainly extracellular enzyme that can be recovered from the residual compost of industrial production of edible mushrooms as Agaricus bisporus and Pleurotus ostreatus. It has also been isolated from microorganisms present in wastewater. The great potential of laccase lies in its ability to oxidize lignin, one component of lignocellulosic materials, this feature can be widely exploited on the pretreatment for agro-food wastes valorization. Laccase is one of the enzymes that fits very well in the circular economy concept, this concept has more benefits over linear economy; based on "reduce-reuse-recycle" theory. Currently, biorefinery processes are booming due to the need to generate clean biofuels that do not come from oil. In that sense, laccase is capable of degrading lignocellulosic materials that serve as raw material in these processes, so the enzyme's potential is evident. This review will critically describe the production sources of laccase as by-product from food industry, bioprocessing of food industry by-products using laccase, and its application in food industry.
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Affiliation(s)
| | | | - Marco Rito-Palomares
- Tecnologico de Monterrey, Escuela de Medicina y Ciencias de la Salud, Monterrey, Mexico
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Perez R, Luccioni M, Kamakaka R, Clamons S, Gaut N, Stirling F, Adamala KP, Silver PA, Endy D. Enabling community-based metrology for wood-degrading fungi. Fungal Biol Biotechnol 2020; 7:2. [PMID: 32206323 PMCID: PMC7081594 DOI: 10.1186/s40694-020-00092-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 02/25/2020] [Indexed: 12/19/2022] Open
Abstract
BACKGROUND Lignocellulosic biomass could support a greatly-expanded bioeconomy. Current strategies for using biomass typically rely on single-cell organisms and extensive ancillary equipment to produce precursors for downstream manufacturing processes. Alternative forms of bioproduction based on solid-state fermentation and wood-degrading fungi could enable more direct means of manufacture. However, basic methods for cultivating wood-degrading fungi are often ad hoc and not readily reproducible. Here, we developed standard reference strains, substrates, measurements, and methods sufficient to begin to enable reliable reuse of mycological materials and products in simple laboratory settings. RESULTS We show that a widely-available and globally-regularized consumer product (Pringles™) can support the growth of wood-degrading fungi, and that growth on Pringles™-broth can be correlated with growth on media made from a fully-traceable and compositionally characterized substrate (National Institute of Standards and Technology Reference Material 8492 Eastern Cottonwood Whole Biomass Feedstock). We also establish a Relative Extension Unit (REU) framework that is designed to reduce variation in quantification of radial growth measurements. So enabled, we demonstrate that five laboratories were able to compare measurements of wood-fungus performance via a simple radial extension growth rate assay, and that our REU-based approach reduced variation in reported measurements by up to ~ 75%. CONCLUSIONS Reliable reuse of materials, measures, and methods is necessary to enable distributed bioproduction processes that can be adopted at all scales, from local to industrial. Our community-based measurement methods incentivize practitioners to coordinate the reuse of standard materials, methods, strains, and to share information supporting work with wood-degrading fungi.
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Affiliation(s)
- Rolando Perez
- Department of Bioengineering, Schools of Engineering and Medicine, Stanford University, Room 252, Shriram Center, 443 Via Ortega, Stanford, CA 94305 USA
| | - Marina Luccioni
- Department of Bioengineering, Schools of Engineering and Medicine, Stanford University, Room 252, Shriram Center, 443 Via Ortega, Stanford, CA 94305 USA
| | - Rohinton Kamakaka
- Department of MCD Biology, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064 USA
| | - Samuel Clamons
- Department of Chemistry and Molecular Biophysics, California Institute of Technology, 1200 E. California Blvd, MC 138-78, Pasadena, CA 91125 USA
- Department of Control and Dynamical Systems, California Institute of Technology, 1200 E. California Blvd, MC 138-78, Pasadena, CA 91125 USA
| | - Nathaniel Gaut
- Department of Genetics, Cell Biology, and Development, College of Biological Sciences, University of Minnesota, 420 Washington Ave. SE, 5-178 MCB, Minneapolis, MN 55455 USA
| | - Finn Stirling
- Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Warren Alpert Building, Boston, MA 02115 USA
- Wyss Institute for Biologically Inspired Engineering, Harvard University, 200 Longwood Avenue, Warren Alpert Building, Boston, MA 02115 USA
| | - Katarzyna P. Adamala
- Department of Genetics, Cell Biology, and Development, College of Biological Sciences, University of Minnesota, 420 Washington Ave. SE, 5-178 MCB, Minneapolis, MN 55455 USA
| | - Pamela A. Silver
- Department of Systems Biology, Harvard Medical School, 200 Longwood Avenue, Warren Alpert Building, Boston, MA 02115 USA
- Wyss Institute for Biologically Inspired Engineering, Harvard University, 200 Longwood Avenue, Warren Alpert Building, Boston, MA 02115 USA
| | - Drew Endy
- Department of Bioengineering, Schools of Engineering and Medicine, Stanford University, Room 252, Shriram Center, 443 Via Ortega, Stanford, CA 94305 USA
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Naim L, Alsanad MA, El Sebaaly Z, Shaban N, Fayssal SA, Sassine YN. Variation of Pleurotus ostreatus (Jacq. Ex Fr.) P. Kumm. (1871) performance subjected to differentdoses and timings of nano-urea. Saudi J Biol Sci 2020; 27:1573-1579. [PMID: 32489297 PMCID: PMC7253906 DOI: 10.1016/j.sjbs.2020.03.019] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 02/28/2020] [Accepted: 03/08/2020] [Indexed: 11/30/2022] Open
Abstract
Supplementation of the growing substrate by nitrogenous additives has been known to improve the production of oyster mushroom (Pleurotus ostreatus (Jacq. ex Fr.) P. Kumm. (1871)). However, the application of nano-additives has not been reported in such cultivation yet. The study investigated the effect of nano-urea added in two different doses (3 g and 5 g per kg substrate), once (at spawning or after first flush) or twice (at spawning and after first flush) to the growing substrate consisting of wheat straw and spent oyster substrate (1:1, w/w). Results showed that the application of nano-urea once has induced the highest number of mushroom flushes (four flushes) despite the dose applied. Contrarily to early findings, where high doses of nitrogen have caused inhibition of mushroom growth and production, nano-urea application has had better effects when applied twice. With 5 g/kg, it induced the shortest period between the first and the third flush (15 days). With 3 g/kg, it resulted in the highest biological and economic yields at the third flush (332.7 g/bag and 283.1 g/bag respectively), in total (973.4 g/bag and 854.0 g/bag respectively), the highest biological efficiency (109.6%), and pileus diameter/stipe length ratio (2.8). Experimental findings of the current study may be potentially applied at commercial scale.
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Affiliation(s)
- Layla Naim
- Department of Plant Production, Faculty of Agriculture, Lebanese University, Beirut, Lebanon.,University of Forestry, 10 Kliment Ohridski Blvd, BG1797 Sofia, Bulgaria
| | - Mohammed A Alsanad
- Department of Environment and Agricultural Natural Resources, College of Agricultural and Food Sciences, King Faisal University, P.O. Box 400, Al Ahsa 31982, Saudi Arabia
| | - Zeina El Sebaaly
- Department of Plant Production, Faculty of Agriculture, Lebanese University, Beirut, Lebanon
| | - Nidal Shaban
- University of Forestry, 10 Kliment Ohridski Blvd, BG1797 Sofia, Bulgaria
| | - Sami Abou Fayssal
- Department of Plant Production, Faculty of Agriculture, Lebanese University, Beirut, Lebanon.,University of Forestry, 10 Kliment Ohridski Blvd, BG1797 Sofia, Bulgaria
| | - Youssef N Sassine
- Department of Plant Production, Faculty of Agriculture, Lebanese University, Beirut, Lebanon.,Department of Agricultural Biotechnology, College of Agricultural and Food Sciences, King Faisal University, P.O. Box 400, Ahsa 31982, Saudi Arabia
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126
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Dávila G LR, Murillo A W, Zambrano F CJ, Suárez M H, Méndez A JJ. Evaluation of nutritional values of wild mushrooms and spent substrate of Lentinus crinitus (L.) Fr. Heliyon 2020; 6:e03502. [PMID: 32181387 PMCID: PMC7062765 DOI: 10.1016/j.heliyon.2020.e03502] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 04/05/2019] [Accepted: 02/24/2020] [Indexed: 12/02/2022] Open
Abstract
In Colombia, despite the great diversity of mushrooms, most are yet unknown from the taxonomic point of view, and even less known from their nutritional composition or their possible application to obtain value-added products from agro-waste. The mycelial growth of Lentinus crinitus (L.) Fr strain was investigated on agro-waste in culture media agar and correlation analyses were performed. The proximate and mineral element composition was determinate in wild mushrooms and spent substrate of L. crinitus, obtained in the solid-state fermentation. The evaluation of the mycelial growth of the L. crinitus strain confirmed that it can grow on agro-waste. The treatment T6 (Orange peel and brand) was determined to be the best for the mycelial growth of L. crinitus (0.0790 cm/h), T7 (Bran, Orange peel and rice husk) and T5 (Rice hush and orange peel) followed, with mycelial growth rates of 0.0753 cm/h and .0720 cm/h, respectively. The growth rate was positively correlated with C/N ratios but negatively correlated with Zn, N and protein. The combination of the agro-waste (T6, T7 and T5) were used to obtain the spent substrate and assess its nutritional potential. The results showed that wild mushrooms of L. crinitus had protein contents of 14.42%, and fiber of 57.18%. The spent substrate of L. crinitus increased their protein content (10.5–11.22%), fiber (44.1–56%) and nitrogen (1.64–1.28%). These advances are promising for the use of L. crinitus as degrader of agro-waste to obtain different products of food and agro-industrial interest.
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Affiliation(s)
- Lina R Dávila G
- Grupo de Investigación en Productos Naturales, GIPRONUT, Universidad del Tolima, Ibagué, 730006, Colombia
| | - Walter Murillo A
- Grupo de Investigación en Productos Naturales, GIPRONUT, Universidad del Tolima, Ibagué, 730006, Colombia
| | - Cristian J Zambrano F
- Grupo de Investigación en Productos Naturales, GIPRONUT, Universidad del Tolima, Ibagué, 730006, Colombia
| | - Héctor Suárez M
- Instituto de Ciencia y Tecnología de Alimentos (ICTA), Universidad Nacional de Colombia, Bogotá, Colombia
| | - Jonh J Méndez A
- Grupo de Investigación en Productos Naturales, GIPRONUT, Universidad del Tolima, Ibagué, 730006, Colombia
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127
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Cortesão M, Schütze T, Marx R, Moeller R, Meyer V. Fungal Biotechnology in Space: Why and How? GRAND CHALLENGES IN FUNGAL BIOTECHNOLOGY 2020. [DOI: 10.1007/978-3-030-29541-7_18] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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128
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First report of the nematicidal activity of Flammulina velutipes, its spent mushroom compost and metabolites. 3 Biotech 2019; 9:410. [PMID: 31692701 DOI: 10.1007/s13205-019-1951-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 10/11/2019] [Indexed: 10/25/2022] Open
Abstract
The aim of the present work was to evaluate the nematicidal potential of Flammulina velutipes and its spent mushroom compost. Additionally, the nematicidal activity of enzymes and metabolites was analyzed. Isolated F. velutipes and its SMC had significant nematicidal effect on Panagrellus sp. larvae. The percentages of reduction in relation to the control group were: 69, 57.5 and 70% for SMC and 56, 24.5 and 26.6% for the isolated fungus, for 24, 48 and 72 h, respectively. The active SMC crude extract showed nematicidal action with reduction percentages of 43 and 57% for 24 and 48 h of incubation, respectively. The boiled crude extract also showed nematicidal action, however, the reduction percentages were lower than those of the active extract. This demonstrated that the nematicidal action was due to enzyme activities and other metabolites. The results demonstrated that SMC, the isolated fungus, the crude extract and the boiled crude extract showed a significant percentage of reduction on Panagrellus sp. larvae. SMC evidenced a higher nematicidal activity than the isolated fungus. In addition, nematophagous activity of F. velutipes was observed for the first time.
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129
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Cerimi K, Akkaya KC, Pohl C, Schmidt B, Neubauer P. Fungi as source for new bio-based materials: a patent review. Fungal Biol Biotechnol 2019; 6:17. [PMID: 31673396 PMCID: PMC6814964 DOI: 10.1186/s40694-019-0080-y] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 10/17/2019] [Indexed: 12/22/2022] Open
Abstract
Background The circular economy closes loops in industrial manufacturing processes and minimizes waste. A bio-based economy aims to replace fossil-based resources and processes by sustainable alternatives which exploits renewable biomass for the generation of products used in our daily live. A current trend in fungal biotechnology—the production of fungal-based biomaterials—will contribute to both. Results This study gives an overview of various trends and development applications in which fungal mycelium is used as new and sustainable biomaterial. A patent survey covering the last decade (2009–2018) yielded 47 patents and patent applications claiming fungal biomass or fungal composite materials for new applications in the packaging, textile, leather and automotive industries. Furthermore, fungal-based materials are envisaged for thermal insulation and as fire protection materials. Most patents and patent applications describe the use of different lignin- and cellulose-containing waste biomass as substrate for fungal cultivations, covering 27 different fungal species in total. Our search uncovered that most patent activities are on-going in the United States and in China. Conclusion Current patent developments in the field suggest that fungal bio-based materials will considerable shape the future of material sciences and material applications. Fungal materials can be considered as an excellent renewable and degradable material alternative with a high innovation potential and have the potential to replace current petroleum-based materials.
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Affiliation(s)
- Kustrim Cerimi
- 1Chair of Bioprocess Engineering, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Ackerstrsse 76, ACK24, 13355 Berlin, Germany.,2Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | - Kerem Can Akkaya
- 1Chair of Bioprocess Engineering, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Ackerstrsse 76, ACK24, 13355 Berlin, Germany.,2Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | - Carsten Pohl
- 2Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | - Bertram Schmidt
- 2Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany
| | - Peter Neubauer
- 1Chair of Bioprocess Engineering, Institute of Biotechnology, Faculty III Process Sciences, Technische Universität Berlin, Ackerstrsse 76, ACK24, 13355 Berlin, Germany
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130
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Filamentous fungi for the production of enzymes, chemicals and materials. Curr Opin Biotechnol 2019; 59:65-70. [DOI: 10.1016/j.copbio.2019.02.010] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 01/28/2019] [Accepted: 02/09/2019] [Indexed: 02/02/2023]
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131
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Chang CC, Li R. Agricultural waste. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2019; 91:1150-1167. [PMID: 31433884 DOI: 10.1002/wer.1211] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Accepted: 08/16/2019] [Indexed: 06/10/2023]
Abstract
The management of agricultural waste has become very important because the inappropriate disposal yields negative effects on the environment. The resource recovery from agricultural waste which converts waste into available resources can reduce the waste and new resource consumption. This review summarizes the 2018 researches of over three hundred scholar papers from several aspects: agricultural waste, and, waste chemical characterization, agricultural waste material, adsorption, waste energy, composting, waste biogas, agricultural waste management, and others.
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Affiliation(s)
- Chein-Chi Chang
- College of Energy and Environment, Shenyang Aerospace University, Shenyang, China
- Department of Engineering and Technical Services, DC Water and Sewer Authority, Washington, DC, USA
| | - Rundong Li
- College of Energy and Environment, Shenyang Aerospace University, Shenyang, China
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132
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Pleurotus spp. Cultivation on Different Agri-Food By-Products: Example of Biotechnological Application. SUSTAINABILITY 2019. [DOI: 10.3390/su11185049] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Agri-food industry generally produces huge volumes of wastes all over the world, and their disposal is a threat to the environment and public health. The chemical composition of most of these wastes make them be defined as lignocellulosic materials, so they could be a suitable substrate for solid-state fermentation process operated by mushrooms. White-rot fungi are well known for their degradation ability of lignocellulosic material, and many scientific works reported the use of different substrates for their production. Biotechnological treatments of agri-food wastes by mushrooms could be considered an eco-friendly solution to reuse and valorize them, besides to reduce their environmental impact. In this way, wastes would be transformed into new resources to produce added-value food products, besides representing an economic return for the same industries. The aim of this review is to provide an overview of the recent literature concerning the use of different agri-food residues as growth substrates for Pleurotus spp. cultivation, with attention to their effects on the growth and chemical composition of the cultivated mushrooms.
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133
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Multi-objective optimization of cost-effective and customer-centric closed-loop supply chain management model in T-environment. Soft comput 2019. [DOI: 10.1007/s00500-019-04289-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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134
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O'Brien BJ, Milligan E, Carver J, Roy ED. Integrating anaerobic co-digestion of dairy manure and food waste with cultivation of edible mushrooms for nutrient recovery. BIORESOURCE TECHNOLOGY 2019; 285:121312. [PMID: 30978584 DOI: 10.1016/j.biortech.2019.121312] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 03/31/2019] [Accepted: 04/01/2019] [Indexed: 06/09/2023]
Abstract
State-level policies in the New England region of the United States require diversion of organic materials away from landfills. One management option for food waste is anaerobic co-digestion with dairy manure. In addition to biogas, anaerobic digestion produces separated solid and liquid digestates. Solid digestates in the region are typically recycled as animal bedding before returning to the digester and liquids are used to fertilize local soils. Repeated land application of nutrients can contribute to eutrophication risk over time and alternative models are needed to convert digestates into valuable export products. We tested solid digestates derived from dairy manure and food waste as substrate ingredients in the cultivation of Pleurotus ostreatus. We show these materials can be used to offset non-local substrate ingredients while achieving mushroom yields comparable to commercial recipes. This strategy could help divert nutrients away from land adjacent to digesters and into safe, protein-rich food, while producing useful spent mushroom substrate.
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Affiliation(s)
- Brendan J O'Brien
- Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, VT 05405, USA
| | - Eric Milligan
- New Hampshire Mushroom Company, Tamworth, NH 03886, USA
| | - Jon Carver
- North Spore Mushroom Company, Westbrook, ME 04092, USA
| | - Eric D Roy
- Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, VT 05405, USA; Gund Institute for Environment, University of Vermont, Burlington, VT 05405, USA.
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135
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136
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Jan Vonk P, Escobar N, Wösten HAB, Lugones LG, Ohm RA. High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins. Sci Rep 2019; 9:7632. [PMID: 31113995 PMCID: PMC6529522 DOI: 10.1038/s41598-019-44133-2] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 05/09/2019] [Indexed: 12/11/2022] Open
Abstract
Efficient gene deletion methods are essential for the high-throughput study of gene function. Compared to most ascomycete model systems, gene deletion is more laborious in mushroom-forming basidiomycetes due to the relatively low incidence of homologous recombination (HR) and relatively high incidence of non-homologous end-joining (NHEJ). Here, we describe the use of pre-assembled Cas9-sgRNA ribonucleoproteins (RNPs) to efficiently delete the homeodomain transcription factor gene hom2 in the mushroom-forming basidiomycete Schizophyllum commune by replacing it with a selectable marker. All components (Cas9 protein, sgRNA, and repair template with selectable marker) were supplied to wild type protoplasts by PEG-mediated transformation, abolishing the need to optimize the expression of cas9 and sgRNAs. A Δku80 background further increased the efficiency of gene deletion. A repair template with homology arms of 250 bp was sufficient to efficiently induce homologous recombination. This is the first report of the use of pre-assembled Cas9 RNPs in a mushroom-forming basidiomycete and this approach may also improve the genetic accessibility of non-model species.
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Affiliation(s)
- Peter Jan Vonk
- Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
| | - Natalia Escobar
- Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
| | - Han A B Wösten
- Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
| | - Luis G Lugones
- Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
| | - Robin A Ohm
- Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.
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137
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Chang J, Chan PL, Xie Y, Ma KL, Cheung MK, Kwan HS. Modified recipe to inhibit fruiting body formation for living fungal biomaterial manufacture. PLoS One 2019; 14:e0209812. [PMID: 31083677 PMCID: PMC6513072 DOI: 10.1371/journal.pone.0209812] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2018] [Accepted: 04/29/2019] [Indexed: 11/30/2022] Open
Abstract
Living fungal mycelium with abolished ability to form fruiting bodies is a self-healing substance, which is particularly valuable for further engineering and development as materials sensing environmental changes and secreting signals. Suppression of fruiting body formation is also a useful tool for maintaining the stability of a mycelium-based material with ease and lower cost. The objective of this study was to provide a biochemical solution to regulate the fruiting body formation, which may replace heat killing of mycelium in practice. The concentrations of glycogen synthase kinase-3 (GSK-3) inhibitors, such as lithium chloride or CHIR99021 trihydrochloride, were found to directly correlate with the development of fruiting bodies in the mushroom forming fungi such as Coprinopsis cinerea and Pleurotus djamor. Sensitive windows to these inhibitors throughout the fungal life cycle were also identified. We suggest the inclusion of GSK-3 inhibitors in the cultivation recipes for inhibiting fruiting body formation and regulating mycelium growth. This is the first report of using a GSK-3 inhibitor to suppress fruiting body formation in living fungal mycelium-based materials. It provides an innovative strategy for easy, reliable, and low cost maintenance of materials containing living fungal mycelium.
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Affiliation(s)
- Jinhui Chang
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Po Lam Chan
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Yichun Xie
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Ka Lee Ma
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Man Kit Cheung
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Hoi Shan Kwan
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
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138
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Cairns TC, Zheng X, Zheng P, Sun J, Meyer V. Moulding the mould: understanding and reprogramming filamentous fungal growth and morphogenesis for next generation cell factories. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:77. [PMID: 30988699 PMCID: PMC6446404 DOI: 10.1186/s13068-019-1400-4] [Citation(s) in RCA: 77] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 03/09/2019] [Indexed: 05/21/2023]
Abstract
Filamentous fungi are harnessed as cell factories for the production of a diverse range of organic acids, proteins, and secondary metabolites. Growth and morphology have critical implications for product titres in both submerged and solid-state fermentations. Recent advances in systems-level understanding of the filamentous lifestyle and development of sophisticated synthetic biological tools for controlled manipulation of fungal genomes now allow rational strain development programs based on data-driven decision making. In this review, we focus on Aspergillus spp. and other industrially utilised fungi to summarise recent insights into the multifaceted and dynamic relationship between filamentous growth and product titres from genetic, metabolic, modelling, subcellular, macromorphological and process engineering perspectives. Current progress and knowledge gaps with regard to mechanistic understanding of product secretion and export from the fungal cell are discussed. We highlight possible strategies for unlocking lead genes for rational strain optimizations based on omics data, and discuss how targeted genetic manipulation of these candidates can be used to optimise fungal morphology for improved performance. Additionally, fungal signalling cascades are introduced as critical processes that can be genetically targeted to control growth and morphology during biotechnological applications. Finally, we review progress in the field of synthetic biology towards chassis cells and minimal genomes, which will eventually enable highly programmable filamentous growth and diversified production capabilities. Ultimately, these advances will not only expand the fungal biotechnology portfolio but will also significantly contribute to a sustainable bio-economy.
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Affiliation(s)
- Timothy C. Cairns
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
| | - Xiaomei Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
| | - Ping Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
| | - Jibin Sun
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
| | - Vera Meyer
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 China
- Department of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany
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139
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Rahmann G, Grimm D, Kuenz A, Hessel E. Combining land-based organic and landless food production: a concept for a circular and sustainable food chain for Africa in 2100. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/s13165-019-00247-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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140
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Agronomic and environmental factors affecting cultivation of the winter mushroom or Enokitake: achievements and prospects. Appl Microbiol Biotechnol 2019; 103:2469-2481. [DOI: 10.1007/s00253-019-09652-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 01/14/2019] [Accepted: 01/15/2019] [Indexed: 01/25/2023]
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141
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Cairns TC, Feurstein C, Zheng X, Zheng P, Sun J, Meyer V. A quantitative image analysis pipeline for the characterization of filamentous fungal morphologies as a tool to uncover targets for morphology engineering: a case study using aplD in Aspergillus niger. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:149. [PMID: 31223339 PMCID: PMC6570962 DOI: 10.1186/s13068-019-1473-0] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Accepted: 05/20/2019] [Indexed: 05/05/2023]
Abstract
BACKGROUND Fungal fermentation is used to produce a diverse repertoire of enzymes, chemicals, and drugs for various industries. During submerged cultivation, filamentous fungi form a range of macromorphologies, including dispersed mycelia, clumped aggregates, or pellets, which have critical implications for rheological aspects during fermentation, gas/nutrient transfer, and, thus, product titres. An important component of strain engineering efforts is the ability to quantitatively assess fungal growth phenotypes, which will drive novel leads for morphologically optimized production strains. RESULTS In this study, we developed an automated image analysis pipeline to quantify the morphology of pelleted and dispersed growth (MPD) which rapidly and reproducibly measures dispersed and pelleted macromorphologies from any submerged fungal culture. It (i) enables capture and analysis of several hundred images per user/day, (ii) is designed to quantitatively assess heterogeneous cultures consisting of dispersed and pelleted forms, (iii) gives a quantitative measurement of culture heterogeneity, (iv) automatically generates key Euclidian parameters for individual fungal structures including particle diameter, aspect ratio, area, and solidity, which are also assembled into a previously described dimensionless morphology number MN, (v) has an in-built quality control check which enables end-users to easily confirm the accuracy of the automated calls, and (vi) is easily adaptable to user-specified magnifications and macromorphological definitions. To concomitantly provide proof of principle for the utility of this image analysis pipeline, and provide new leads for morphologically optimized fungal strains, we generated a morphological mutant in the cell factory Aspergillus niger based on CRISPR-Cas technology. First, we interrogated a previously published co-expression networks for A. niger to identify a putative gamma-adaptin encoding gene (aplD) that was predicted to play a role in endosome cargo trafficking. Gene editing was used to generate a conditional aplD expression mutant under control of the titratable Tet-on system. Reduced aplD expression caused a hyperbranched growth phenotype and diverse defects in pellet formation with a putative increase in protein secretion. This possible protein hypersecretion phenotype could be correlated with increased dispersed mycelia, and both decreased pellet diameter and MN. CONCLUSION The MPD image analysis pipeline is a simple, rapid, and flexible approach to quantify diverse fungal morphologies. As an exemplar, we have demonstrated that the putative endosomal transport gene aplD plays a crucial role in A. niger filamentous growth and pellet formation during submerged culture. This suggests that endocytic components are underexplored targets for engineering fungal cell factories.
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Affiliation(s)
- Timothy C. Cairns
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
| | - Claudia Feurstein
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Department of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany
| | - Xiaomei Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Ping Zheng
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Jibin Sun
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Vera Meyer
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308 People’s Republic of China
- Department of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany
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