101
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Yerramsetty S, Fronczek FR, Uppu RM. N-(4-Eth-oxy-phen-yl)-3-oxobutanamide. IUCRDATA 2023; 8:x230565. [PMID: 37937129 PMCID: PMC10626611 DOI: 10.1107/s2414314623005655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 06/26/2023] [Indexed: 11/09/2023] Open
Abstract
The title compound, C12H15NO3, crystallizes with Z' = 2 in space group Pca21 with the two independent mol-ecules having almost the same conformation, differing mostly at the end of the butanamide chain. A local inversion center near 1/8, 3/4, z relates the two mol-ecules, as is common for structures in this space group with Z' = 2. The mol-ecule crystallizes as the keto tautomer, and the β-diketone moieties are twisted out of planarity, with O-C⋯C-O pseudo torsion angles of -74.4 (5) and -83.9 (5)°. The N-H group of each independent mol-ecule donates an inter-molecular hydrogen bond to an amide carbonyl oxygen atom by positive or negative translations along the b axis, thus forming anti-parallel chains propagating in the [010] direction.
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Affiliation(s)
- Sreevandana Yerramsetty
- Department of Environmental Toxicology, Southern University and A&M College, Baton Rouge, LA 70813, USA
| | - Frank R. Fronczek
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Rao M. Uppu
- Department of Environmental Toxicology, Southern University and A&M College, Baton Rouge, LA 70813, USA
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102
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Khalilov AN, Khrustalev VN, Samigullina AI, Akkurt M, Rzayev RM, Bhattarai A, Mamedov İG. Crystal structure and Hirshfeld surface analysis of ( E)-1-(2,4-di-methyl-furan-3-yl)-3-phenyl-prop-2-en-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:736-740. [PMID: 37601402 PMCID: PMC10439413 DOI: 10.1107/s2056989023006084] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 07/10/2023] [Indexed: 08/22/2023]
Abstract
The title compound, C15H14O2, adopts an E configuration about the C=C double bond. The furan ring is inclined to the phenyl ring by 12.03 (9)°. In the crystal, pairs of mol-ecules are linked by C-H⋯O hydrogen bonds, forming dimers with R 2 2(14) ring motifs. The mol-ecules are connected via C-H⋯π inter-actions, forming a three dimensional network. No π-π inter-actions are observed.
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Affiliation(s)
- Ali N. Khalilov
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St.6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Aida I. Samigullina
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Rovnag M. Rzayev
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
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103
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Nasr T, Kariuki BM, Elansary MM, Elhaggar R, Zaghary W. Synthesis and crystal structures of ( E)- N'-(4-chloro-3-nitro-benzyl-idene)acetohydrazide and ( E)-2-(4-chloro-benzyl-idene)-1-(quinolin-8-yl)hydrazine. Acta Crystallogr E Crystallogr Commun 2023; 79:762-766. [PMID: 37601392 PMCID: PMC10439415 DOI: 10.1107/s2056989023006412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Accepted: 07/24/2023] [Indexed: 08/22/2023]
Abstract
The syntheses of two benzyl-idenehydrazine derivatives, namely, (E)-N'-(4-chloro-3-nitro-benzyl-idene)acetohydrazide, C9H8ClN3O3, and (E)-2-(4-chloro-benzyl-idene)-1-(quinolin-8-yl)hydrazine, C16H12ClN3, are reported. The mol-ecules have been characterized using IR, 1H NMR, 13C NMR and mass spectro-scopic and elemental analysis techniques, and their structures have been determined by single-crystal X-ray diffraction.
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Affiliation(s)
- Tamer Nasr
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Helwan University, 11795 Helwan, Cairo, Egypt
- Pharmaceutical Chemistry Department, Faculty of Pharmacy, Modern University for Technology and Information, MTI, Cairo, Egypt
| | - Benson M. Kariuki
- School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff, CF10 3AT, United Kingdom
| | - Mai M. Elansary
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Helwan University, 11795 Helwan, Cairo, Egypt
| | - Radwan Elhaggar
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Helwan University, 11795 Helwan, Cairo, Egypt
| | - Wafaa Zaghary
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Helwan University, 11795 Helwan, Cairo, Egypt
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104
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Hay MT, Yennawar HP. Bis(tetra-butyl-ammonium) tetra-chlorido-manganate(II) di-chloro-methane disolvate. IUCRDATA 2023; 8:x230610. [PMID: 37937132 PMCID: PMC10626607 DOI: 10.1107/s2414314623006107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 07/10/2023] [Indexed: 11/09/2023] Open
Abstract
The title compound, (C16H36N)2[MnCl4]·2CH2Cl2, is an ionic organic-inorganic hybride compound consisting of a tetra-butyl-ammonium cation and a tetra-chlorido-manganate(II) anion in a 2:1 stoichiometric ratio. The cation contains a central nitro-gen atom bonded to four n-butyl groups in a tetra-hedral arrangement, while the anion contains a central MnII atom tetra-hedrally coordinated by four chlorido ligands. It co-crystallized with two equivalents of di-chloro-methane solvent, CH2Cl2, to give the following empirical formula: [(C4H9)4N]2[MnCl4]·(CH2Cl2)2. The crystal structure is mainly stabilized by Coulombic inter-actions.
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Affiliation(s)
- Michael T. Hay
- Penn State Beaver, 100 University Drive, Monaca, PA 15061, USA
| | - Hemant P. Yennawar
- The Pennsylvania State University, Dept., Biochemistry and Molecular Biology, University Park, PA 16802, USA
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105
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Naeem M, Le AN, Bauer BE, Chadeayne AR, Golen JA, Manke DR. N-Cyclo-hexyl-tryptamine: freebase, bromide and fumarate. Acta Crystallogr E Crystallogr Commun 2023; 79:752-756. [PMID: 37601400 PMCID: PMC10439405 DOI: 10.1107/s2056989023006217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 07/15/2023] [Indexed: 08/22/2023]
Abstract
The solid-state structures of N-cyclo-hexyl-tryptamine (I) {systematic name: N-[2-(1H-indol-3-yl)eth-yl]cyclo-hexa-namine}, C16H22N2, and two of its salts, N-cyclo-hexyl-tryptammonium bromide (II) {systematic name: N-[2-(1H-indol-3-yl)eth-yl]cyclo-hexa-naminium bromide}, C16H23N2 +·Br-, and N-cyclo-hexyl-tryptammonium fumarate (III) (systematic name: bis-{N-[2-(1H-indol-3-yl)eth-yl]cyclo-hexa-naminium} (2E)-but-2-enedioate), 2C16H23N2 +·C4H2O4 2-, were determined by single-crystal X-ray diffraction. The freebase compound forms infinite chains along [010] through N-H⋯N hydrogen bonds. The bromide salt is held together by N-H⋯Br inter-actions in two-dimensional sheets along (001). The fumarate salt is held together in infinite three-dimensional frameworks by N-H⋯O hydrogen bonds.
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Affiliation(s)
- Marilyn Naeem
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
| | - Alexander N. Le
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
| | - Barbara E. Bauer
- CaaMTech, Inc., 58 East Sunset Way, Suite 209, Issaquah, WA 98027, USA
| | | | - James A. Golen
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
| | - David R. Manke
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
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106
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Vinaya, Richard AS, Murthy SM, Basavaraju YB, Yathirajan HS, Parkin S. The synthesis, crystal structure and spectroscopic analysis of ( E)-3-(4-chloro-phen-yl)-1-(2,3-di-hydro-benzo[ b][1,4]dioxin-6-yl)prop-2-en-1-one. Acta Crystallogr E Crystallogr Commun 2023; 79:674-677. [PMID: 37601584 PMCID: PMC10439433 DOI: 10.1107/s2056989023005613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 06/26/2023] [Indexed: 08/22/2023]
Abstract
The synthesis, crystal structure and spectroscopic analysis of (E)-1-(2,3-di-hydro-benzo[b][1,4]dioxin-6-yl)-3-(4-chloro-phen-yl)prop-2-en-1-one (C17H13ClO3), a substituted chalcone, are described. The overall geometry of the mol-ecule is largely planar (r.m.s. deviation = 0.1742 Å), but slightly kinked, leading to a dihedral angle between the planes of the benzene rings at either side of the mol-ecule of 8.31 (9)°. In the crystal, only weak inter-actions determine the packing motifs. These include C-H⋯O and C-H⋯Cl hydrogen bonds and π-π overlap of aromatic rings.
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Affiliation(s)
- Vinaya
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India
| | - Austin S. Richard
- Aavishkaar Research Centre, Coorg Institute of Dental Sciences, Virajpet 571 218, India
| | - Subbiah M. Murthy
- Department of Microbiology, Yuvaraja’s College, Mysore 570 005, India
| | - Yeriyur B. Basavaraju
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India
| | - Hemmige S. Yathirajan
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570 006, India
| | - Sean Parkin
- Department of Chemistry, University of Kentucky, Lexington, KY 40506-0055, USA
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107
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Abu-Zaied MA, Hebishy AMS, Elgemeie GH, Salama HT, Jones PG. Crystal structure of 5-(β-d-gluco-pyran-osyl-thio)- N-(4-methyl-phen-yl)-1,3,4-thia-diazol-2-amine. Acta Crystallogr E Crystallogr Commun 2023; 79:652-656. [PMID: 37601574 PMCID: PMC10439424 DOI: 10.1107/s2056989023005248] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 06/12/2023] [Indexed: 08/22/2023]
Abstract
In the structure of the title compound, C15H19N3O5S2, the bond lengths at the linking sulfur atom are significantly different [1.7473 (17) and 1.811 (2) Å], and the angle at the exocyclic nitro-gen atom is wide at 128.45 (18)°. The inter-planar angle between the tolyl and thia-diazole rings is 9.2 (1)°. The complex hydrogen-bonding pattern, involving five donors and five acceptors, can be broken down into a one-dimensional ribbon parallel to the b axis, involving hydrogen bonds of the sugar residues only, and a two-dimensional layer structure parallel to the ab plane, based on the N-H⋯O and O-H⋯N hydrogen bonds.
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Affiliation(s)
| | - Ali M. S. Hebishy
- Chemistry Department, Faculty of Science, Helwan University, Cairo, Egypt
| | - Galal H. Elgemeie
- Chemistry Department, Faculty of Science, Helwan University, Cairo, Egypt
| | - Hagar T. Salama
- Chemistry Department, Faculty of Science, Helwan University, Cairo, Egypt
| | - Peter G. Jones
- Institut für Anorganische und Analytische Chemie, Technische Universität Braunschweig, Hagenring 30, D-38106 Braunschweig, Germany
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108
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Babu S, Claville MO, Fronczek FR, Uppu RM. l-Me-thion-yl-l-tyrosine monohydrate. IUCRDATA 2023; 8:x230551. [PMID: 37936870 PMCID: PMC10626622 DOI: 10.1107/s2414314623005515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 06/22/2023] [Indexed: 11/09/2023] Open
Abstract
The study of the oxidation of various proteins necessitates scrutiny of the amino acid sequence. Since me-thio-nine (Met) and tyrosine (Tyr) are easily oxidized, peptides that contain these amino acids are frequently studied using a variety of oxidation methods, including, but not limited to, pulse radiolysis, electrochemical oxidation, and laser flash photolysis. To date, the oxidation of the Met-Tyr dipeptide is not fully understood. Several investigators have proposed a mechanism of intra-molecular electron transfer between the sulfide radical of Met and the Tyr residue. Our elucidation of the structure and absolute configuration of l-Met-l-Tyr monohydrate, C14H20N2O4S·H2O (systematic name: (2S)-2-{[(2S)-2-amino-4-methyl-sulfanyl-butano-yl]amino}-3-(4-hy-droxy-phen-yl)propanoic acid monohydrate) is presented herein and provides information about the zwitterionic nature of the dipeptide. We suspect that the zwitterionic state of the dipeptide and its inter-action within the solvent medium may play a major role in the oxidation of the dipeptide. In the crystal, all the potential donor atoms inter-act via strong N-H⋯O, C-H⋯O, O-H⋯S, and O-H⋯O hydrogen bonds.
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Affiliation(s)
- Sainath Babu
- Department of Biological Science, Hampton University, Hampton, VA 23668, USA
| | | | - Frank R. Fronczek
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Rao M. Uppu
- Department of Environmental Toxicology, Southern University and A&M College, Baton Rouge, LA 70813, USA
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109
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Bütikofer A, Chen P. Cyclo-penta-dienone triisocyanide iron complexes: general synthesis and crystal structures of tris-(2,6-di-methyl-phenyl isocyanide)(η 4-tetra-phenyl-cyclo-penta-dienone)iron and tris-(naphthalen-2-yl iso-cyanide)(η 4-tetra-phenyl-cyclo-penta-dienone)iron acetone hemisolvate. Acta Crystallogr E Crystallogr Commun 2023; 79:626-632. [PMID: 37601576 PMCID: PMC10439430 DOI: 10.1107/s205698902300498x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 06/06/2023] [Indexed: 08/22/2023]
Abstract
Irradiation of a toluene solution containing cyclo-penta-dienone tricarbonyl iron complexes and isocyanides with blue LEDs afforded the formation and isolation of 12 triisocyanide complexes, two of which, namely tris-(2,6-di-methyl-phenyl isocyanide)(η4-tetra-phenyl-cyclo-penatedienone)iron, [Fe(C9H9N)3(C29H20O)], and tris-(naphthalen-2-yl isocyanide)(η4-tetra-phenyl-cyclo-penatedienone)iron acetone hemisolvate, [Fe(C11H7N)3(C29H20O)]2·C3H6O, could be characterized crystallographically. The air-stable compounds were purified by column chroma-tography and were characterized by 1H NMR, 13C NMR, elemental analysis and HRMS. NMR and XRD data indicate generally more electron-rich Fe0 centers compared to the corresponding tricarbonyl compounds.
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Affiliation(s)
- André Bütikofer
- Department of Chemistry and Applied Biosciences, Laboratory of Organic Chemistry, ETH Zurich, Zurich 8093, Switzerland
| | - Peter Chen
- Department of Chemistry and Applied Biosciences, Laboratory of Organic Chemistry, ETH Zurich, Zurich 8093, Switzerland
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110
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Klar PB, Krysiak Y, Xu H, Steciuk G, Cho J, Zou X, Palatinus L. Accurate structure models and absolute configuration determination using dynamical effects in continuous-rotation 3D electron diffraction data. Nat Chem 2023; 15:848-855. [PMID: 37081207 PMCID: PMC10239730 DOI: 10.1038/s41557-023-01186-1] [Citation(s) in RCA: 35] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 03/16/2023] [Indexed: 04/22/2023]
Abstract
Continuous-rotation 3D electron diffraction methods are increasingly popular for the structure analysis of very small organic molecular crystals and crystalline inorganic materials. Dynamical diffraction effects cause non-linear deviations from kinematical intensities that present issues in structure analysis. Here, a method for structure analysis of continuous-rotation 3D electron diffraction data is presented that takes multiple scattering effects into account. Dynamical and kinematical refinements of 12 compounds-ranging from small organic compounds to metal-organic frameworks to inorganic materials-are compared, for which the new approach yields significantly improved models in terms of accuracy and reliability with up to fourfold reduction of the noise level in difference Fourier maps. The intrinsic sensitivity of dynamical diffraction to the absolute structure is also used to assign the handedness of 58 crystals of 9 different chiral compounds, showing that 3D electron diffraction is a reliable tool for the routine determination of absolute structures.
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Affiliation(s)
- Paul B Klar
- Institute of Physics, Czech Academy of Sciences, Prague, Czech Republic
- Department of Geosciences, University of Bremen, Bremen, Germany
| | - Yaşar Krysiak
- Institute of Physics, Czech Academy of Sciences, Prague, Czech Republic
- Institute of Inorganic Chemistry, Leibniz University Hannover, Hannover, Germany
| | - Hongyi Xu
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden
| | - Gwladys Steciuk
- Institute of Physics, Czech Academy of Sciences, Prague, Czech Republic
| | - Jung Cho
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden
| | - Xiaodong Zou
- Department of Materials and Environmental Chemistry, Stockholm University, Stockholm, Sweden
| | - Lukas Palatinus
- Institute of Physics, Czech Academy of Sciences, Prague, Czech Republic.
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111
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McClements IF, Wiesler CR, Tanski JM. Crystallographic and spectroscopic characterization of two 1-phenyl-1 H-imidazoles: 4-(1 H-imidazol-1-yl)benzaldehyde and 1-(4-meth-oxy-phen-yl)-1 H-imidazole. Acta Crystallogr E Crystallogr Commun 2023; 79:678-681. [PMID: 37601580 PMCID: PMC10439435 DOI: 10.1107/s2056989023005480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 06/21/2023] [Indexed: 08/22/2023]
Abstract
The title compounds, C10H8N2O, (I), and C10H10N2O, (II), are two 1-phenyl-1H-imidazole derivatives, which differ in the substituent para to the imidazole group on the arene ring, i.e. a benzaldehyde, (I), and an anisole, (II). Both mol-ecules pack with different motifs via similar weak C-H⋯N/O inter-actions and differ with respect to the angles between the mean planes of the imidazole and arene rings [24.58 (7)° in (I) and 43.67 (4)° in (II)].
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Affiliation(s)
| | - Clara R. Wiesler
- Department of Chemistry, Vassar College, Poughkeepsie, NY 12604, USA
| | - Joseph M. Tanski
- Department of Chemistry, Vassar College, Poughkeepsie, NY 12604, USA
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112
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Dong YL, Li XM, Shi XS, Wang YR, Wang BG, Meng LH. Diketopiperazine Alkaloids and Bisabolene Sesquiterpenoids from Aspergillus versicolor AS-212, an Endozoic Fungus Associated with Deep-Sea Coral of Magellan Seamounts. Mar Drugs 2023; 21:md21050293. [PMID: 37233487 DOI: 10.3390/md21050293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 05/04/2023] [Accepted: 05/08/2023] [Indexed: 05/27/2023] Open
Abstract
Two new quinazolinone diketopiperazine alkaloids, including versicomide E (2) and cottoquinazoline H (4), together with ten known compounds (1, 3, and 5-12) were isolated and identified from Aspergillus versicolor AS-212, an endozoic fungus associated with the deep-sea coral Hemicorallium cf. imperiale, which was collected from the Magellan Seamounts. Their chemical structures were determined by an extensive interpretation of the spectroscopic and X-ray crystallographic data as well as specific rotation calculation, ECD calculation, and comparison of their ECD spectra. The absolute configurations of (-)-isoversicomide A (1) and cottoquinazoline A (3) were not assigned in the literature reports and were solved in the present work by single-crystal X-ray diffraction analysis. In the antibacterial assays, compound 3 exhibited antibacterial activity against aquatic pathogenic bacteria Aeromonas hydrophilia with an MIC value of 18.6 μM, while compounds 4 and 8 exhibited inhibitory effects against Vibrio harveyi and V. parahaemolyticus with MIC values ranging from 9.0 to 18.1 μM.
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Affiliation(s)
- Yu-Liang Dong
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
- Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Wenhai Road 1, Qingdao 266237, China
- University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, China
| | - Xiao-Ming Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
- Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Wenhai Road 1, Qingdao 266237, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
| | - Xiao-Shan Shi
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
| | - Yi-Ran Wang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
- Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Wenhai Road 1, Qingdao 266237, China
- University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, China
| | - Bin-Gui Wang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
- Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Wenhai Road 1, Qingdao 266237, China
- University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
| | - Ling-Hong Meng
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
- Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Wenhai Road 1, Qingdao 266237, China
- University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China
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113
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Novoa-Ramírez CS, Silva-Becerril A, González-Ballesteros MM, Gomez-Vidal V, Flores-Álamo M, Ortiz-Frade L, Gracia-Mora J, Ruiz-Azuara L. Biological activity of mixed chelate copper(II) complexes, with substituted diimine and tridentate Schiff bases (NNO) and their hydrogenated derivatives as secondary ligands: Casiopeína's fourth generation. J Inorg Biochem 2023; 242:112097. [PMID: 36812707 DOI: 10.1016/j.jinorgbio.2022.112097] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 11/29/2022] [Accepted: 12/07/2022] [Indexed: 12/14/2022]
Abstract
We synthesize and characterize nine copper(II) compounds. Four with general formula [Cu(NNO)(NO3)] and five mixed chelates [Cu(NNO)(N-N)]+, where NNO corresponds to asymmetric salen ligands (E)-2-((2-(methylamino)ethylimino)methyl)phenolate (L1) and (E)-3-((2-(methylamino)ethylimino)methyl)naphthalenolate (LN1); and their hydrogenated derivatives 2-((2-(methylamino)ethylamino)methyl)phenolate (LH1) and 3-((2-(methylamino)ethylamino)methyl)naphthalenolate (LNH1); and N-N correspond to 4,4'-dimethyl-2,2'-bipiridyne(dmbpy) or 1,10-phenanthroline (phen). Using EPR, the geometries of the compounds in solution in DMSO were assigned, [Cu(LN1)(NO3)] and [Cu(LNH1)(NO3)] a square-planar, [Cu(L1)(NO3)], [Cu(LH1)(NO3)], [Cu(L1)(dmby)]+ and [Cu(LH1)(dmby)]+ a square-based pyramid; and [Cu(LN1)(dmby)]+, [Cu(LNH1)(dmby)]+ and [Cu(L1)(phen)]+ and elongated octahedral. By X-ray it was observed that [Cu(L1)(dmby)]+ and. [Cu(LN1)(dmby)]+ presented a square-based pyramidal, and [Cu(LN1)(NO3)]+ a square-planar geometry. The electrochemical study showed that copper reduction process is a quasi-reversible system, where the complexes with hydrogenated ligands were less oxidizing. The cytotoxicity of the complexes was tested by MTT assay, all the compounds showed biological activity in HeLa cell line, the mixed compounds were the more active ones. Naphthalene moiety, imine hydrogenation and aromatic diimine coordination, increased biological activity. A structure-activity relationships were found: Log(IC50) = - 1.01(Epc) - 0.35(Conjugated Rings) + 0.87, for Schiff base complexes and Log(IC50) = 0.078(Epc) - 0.32(Conjugated Rings) + 1.94, for hydrogenated complexes; the less oxidizing species with a great number of conjugated rings presented the best biological activity. Complexes-DNA binding constants were obtained by uv-vis studies using CT-DNA, the results suggested that the complexes can interact through the grooves, except the phenanthroline mixed complex that intercalate with DNA. Gel electrophoresis study with pBR 322 showed that compounds can produce changes in the form of DNA and some complexes can cleave DNA in the presence of H2O2.
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Affiliation(s)
- Cynthia Sinai Novoa-Ramírez
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Areli Silva-Becerril
- Instituto de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Mauricio Misael González-Ballesteros
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Virginia Gomez-Vidal
- Instituto de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Marcos Flores-Álamo
- Unidad de Servicios de Apoyo a la Investigación y a la Industria, Facultad de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Luis Ortiz-Frade
- Departamento de Electroquímica, Centro de Investigación y Desarrollo Tecnológico en Electroquímica S.C. Parque Tecnológico, Sanfandila, Pedro de Escobedo, 76703 Querétaro, Mexico
| | - Jesús Gracia-Mora
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico
| | - Lena Ruiz-Azuara
- Departamento de Química Inorgánica y Nuclear, Facultad de Química, Universidad Nacional Autónoma de México, Av. Universidad 3000, Circuito Exterior S/N, Coyoacán, 04510 Ciudad de México, Mexico.
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114
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Naeem M, Anas NA, Chadeayne AR, Golen JA, Manke DR. N-Methyl-serotonin hydrogen oxalate. IUCRDATA 2023; 8:x230378. [PMID: 37287863 PMCID: PMC10242732 DOI: 10.1107/s2414314623003784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 04/26/2023] [Indexed: 06/09/2023] Open
Abstract
The solid-state structure of N-methyl-serotonin {systematic name: [2-(5-hy-droxy-1H-indol-3-yl)eth-yl](meth-yl)aza-nium hydrogen oxalate}, C11H15N2O+·C2HO4 -, is reported. The structure possesses a singly protonated N-methylserotonin cation and one hydrogen oxalate anion in the asymmetric unit. In the crystal, the mol-ecules are linked by N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network.
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Affiliation(s)
- Marilyn Naeem
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
| | - Nicholas A. Anas
- CaaMTech, Inc., 58 East Sunset Way, Suite 209, Issaquah, WA 98027, USA
| | | | - James A. Golen
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
| | - David R. Manke
- University of Massachusetts Dartmouth, 285 Old Westport Road, North Dartmouth, MA 02747, USA
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115
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Banna MHA, Sheikh MC, Miyatake R, Howlader MBH, Zangrando E. Crystal structure of 4-[(4-methyl-benz-yl)-oxy]- N'-(4-nitro-benzyl-idene)benzohydrazide: a new hydrazone derivative. Acta Crystallogr E Crystallogr Commun 2023; 79:531-533. [PMID: 37288456 PMCID: PMC10242741 DOI: 10.1107/s2056989023003948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 05/02/2023] [Indexed: 06/09/2023]
Abstract
The mol-ecular structure of the title compound, C22H19N3O4, shows a non-coplanar conformation, with dihedral angles between the phenyl rings of 73.3 (1) and 80.9 (1)°. These deformations are induced by the crystal packing that is mainly governed by N-H⋯O and C-H⋯O hydrogen bonds, forming a mono-periodic arrangement parallel to the b axis.
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Affiliation(s)
| | - Md. Chanmiya Sheikh
- Department of Applied Science, Faculty of Science, Okayama University of Science,Japan
| | - Ryuta Miyatake
- Center for Environmental Conservation and Research Safety, University of Toyama, 3190 Gofuku, Toyama, 930-8555, Japan
| | | | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences, University of Trieste, Italy
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116
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Bhadbhade MM, Gao J, Rich AM, Marjo CE. Structure of racemic duloxetine hydro-chloride. Acta Crystallogr E Crystallogr Commun 2023; 79:488-493. [PMID: 37151834 PMCID: PMC10162076 DOI: 10.1107/s2056989023003353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 04/11/2023] [Indexed: 05/09/2023]
Abstract
Duloxetine hydro-chloride (trade name Cymbalta) is marketed as a single enanti-omer (S)-N-methyl-3-(naphthalen-1-yl-oxy)-3-(thio-phen-2-yl)propyl-am-in-ium chloride, C18H20NOS+·Cl-, which is twice as effective as the (R)-enanti-omer in serotonin uptake. Here, we report the crystal structure of duloxetine hydro-chloride in its racemic form (space group Pna21), where it shows significant differences in the mol-ecular conformation and packing in its extended structure compared to the previously reported (S)-enanti-omer crystal structure. Mol-ecules of this type, comprising aromatic groups with a single side chain terminated in a protonated secondary amine, are commonly found in active anti-depressants. A Cambridge Structural Database survey of mol-ecules with these features reveals a strong correlation between side-chain conformation and the crystal packing: an extended side chain leads to mol-ecules packed into separated layers of hydro-phobic and ionic hydro-philic phases. By comparison, mol-ecules with bent side chains, such as racemic duloxetine hydro-chloride, lead to crystal-packing motifs where an ionic hydro-philic phase is encapsulated within a hydro-phobic shell.
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Affiliation(s)
- Mohan M. Bhadbhade
- Mark Wainwright Analytical Centre, The University of New South Wales, UNSW, Sydney NSW 2052, Australia
- Correspondence e-mail:
| | - Jiabin Gao
- School of Chemistry, The University of New South Wales, UNSW Sydney NSW 2052, Australia
| | - Anne M. Rich
- Mark Wainwright Analytical Centre, The University of New South Wales, UNSW, Sydney NSW 2052, Australia
| | - Christopher E. Marjo
- Mark Wainwright Analytical Centre, The University of New South Wales, UNSW, Sydney NSW 2052, Australia
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117
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Vinaya, Anil Kumar HG, Mohan Kumar TM, Lakshmana B, Basavaraju YB, Yathirajan HS, Parkin S. Syntheses, crystal structures and Hirshfeld surface analyses of four mol-ecular salts of amitriptynol. Acta Crystallogr E Crystallogr Commun 2023; 79:451-457. [PMID: 37151840 PMCID: PMC10162082 DOI: 10.1107/s2056989023003225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 04/07/2023] [Indexed: 09/19/2024]
Abstract
The syntheses and crystal structures of four salts of amitriptynol (C20H25NO) with different carb-oxy-lic acids are described. The salts formed directly from solutions of amitriptyline (which first hydrolysed to amitriptynol) and the cor-responding acid in aceto-nitrile to form amitriptynolium [sys-tem-atic name: (3-{2-hy-droxy-tri-cy-clo[9.4.0.03,8]penta-deca-1(11),3,5,7,12,14-hexa-en-2-yl}pro-pyl)di-methyl-az-an-ium] 4-meth-oxy-benzoate monohydrate, C20H26NO+·C8H7O3 -·H2O, (I), ami-triptynolium 3,4-di-meth-oxy-benzoate trihydrate, C20H26NO+·C9H9O4 -·3H2O, (II), amitriptynolium 2-chloro-benzoate, C20H26NO+·C7H4ClO2 -, (III), and amitriptynolium thio-phene-2-carboxyl-ate monohydrate, C20H26NO+·C5H3O2S-·H2O, (IV). Compound (III) crystallizes with two cations, two anions and six water mol-ecules in the asymmetric unit. The different conformations of the amitriptynolium cations are determined by the torsion angles in the di-methyl-amino-propyl chains and the -CH2-CH2- bridge between the benzene rings in the tricyclic ring system, and are complicated by disorder of the bridging unit in II and III. The packing in all four salts is dominated by N-H⋯O and O-H⋯O hydrogen bonds. Hirshfeld surface analyses show that the amitriptynolium cations make similar inter-species contacts, despite the distinctly different packing in each salt.
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Affiliation(s)
- Vinaya
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru-570 006, India
| | - Haleyur G. Anil Kumar
- Department of Science and Humanities, PES University, BSK III Stage, Bengaluru-560 085, India
| | - Thaluru M. Mohan Kumar
- Department of Chemistry, Amrita School of Engineering, Amrita Vishwa Vidyapeetham, Bengaluru-560 035, India
| | - Beliyaiah Lakshmana
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru-570 006, India
| | - Yeriyur B. Basavaraju
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru-570 006, India
| | - Hemmige S. Yathirajan
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru-570 006, India
| | - Sean Parkin
- Department of Chemistry, University of Kentucky, Lexington, KY, 40506-0055, USA
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118
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Iwasaki C, Hishinuma K, Takase T, Oyama D. Crystallographic evidence for the stereoselective substitution of equatorial pyridyl ligands in ruthenium(III) complexes. Heliyon 2023; 9:e14876. [PMID: 37089340 PMCID: PMC10114143 DOI: 10.1016/j.heliyon.2023.e14876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 03/19/2023] [Accepted: 03/21/2023] [Indexed: 04/25/2023] Open
Abstract
Mononuclear Ru complexes catalyze dioxygen formation via water splitting; therefore, a detailed investigation into their water-oxidation process is necessary. In this study, we synthesized a series of Ru(III) complexes containing a dianionic tridentate ligand with three pyridine groups (one coordinated to Ru while the other two are "free") and investigated their substitution reactions in a water/acetonitrile mixture. Among the monodentate pyridyl ligands, the one at the equatorial position was crystallographically proven to be selectively substituted. Therefore, our results experimentally demonstrate the proposed coordination geometry for an intermediate during water oxidation over Ru complexes.
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Affiliation(s)
- Chihiro Iwasaki
- Graduate School of Science and Engineering, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan
| | - Ken Hishinuma
- Graduate School of Science and Engineering, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan
| | - Tsugiko Takase
- Department of Natural Sciences and Informatics, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan
| | - Dai Oyama
- Department of Natural Sciences and Informatics, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan
- Corresponding author.
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119
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Karimli EG, Khrustalev VN, Kurasova MN, Akkurt M, Khalilov AN, Bhattarai A, Mamedov İG. Crystal structure and Hirshfeld surface analysis of (5a S,8a R)-3,5a-dimethyl-8-methyl-idene-2-oxododeca-hydro-oxireno[2',3':6,7]naphtho-[1,2- b]furan-6-yl ( Z)-2-methyl-but-2-enoate extracted from Ferula persica. Acta Crystallogr E Crystallogr Commun 2023; 79:474-477. [PMID: 37151821 PMCID: PMC10162084 DOI: 10.1107/s205698902300333x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 04/11/2023] [Indexed: 05/09/2023]
Abstract
In the title compound, C20H26O5, the two cyclo-hexane rings adopt boat and half-chair conformations. In the crystal, adjacent mol-ecules are connected by inter-molecular C-H⋯O hydrogen bonds, forming a three-dimensional network. According to a Hirshfeld surface study, H⋯H inter-actions are the most significant contributors to the crystal packing (63.0%).
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Affiliation(s)
- Elvin G. Karimli
- Azerbaijan Medical University, Bakikhanov st. 23, AZ1022, Baku, Azerbaijan
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
- N. D. Zelinsky Institute of Organic Chemistry RAS, Leninsky Prosp. 47, Moscow, 119991, Russian Federation
| | - Margarita N. Kurasova
- Peoples’ Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russian Federation
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye
| | - Ali N. Khalilov
- "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
| | - İbrahim G. Mamedov
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan
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120
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Kacsir I, Sipos A, Major E, Bajusz N, Bényei A, Buglyó P, Somsák L, Kardos G, Bai P, Bokor É. Half-Sandwich Type Platinum-Group Metal Complexes of C-Glucosaminyl Azines: Synthesis and Antineoplastic and Antimicrobial Activities. Molecules 2023; 28:molecules28073058. [PMID: 37049820 PMCID: PMC10096180 DOI: 10.3390/molecules28073058] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 03/22/2023] [Accepted: 03/23/2023] [Indexed: 04/01/2023] Open
Abstract
While platinum-based compounds such as cisplatin form the backbone of chemotherapy, the use of these compounds is limited by resistance and toxicity, driving the development of novel complexes with cytostatic properties. In this study, we synthesized a set of half-sandwich complexes of platinum-group metal ions (Ru(II), Os(II), Ir(III) and Rh(III)) with an N,N-bidentate ligand comprising a C-glucosaminyl group and a heterocycle, such as pyridine, pyridazine, pyrimidine, pyrazine or quinoline. The sugar-containing ligands themselves are unknown compounds and were obtained by nucleophilic additions of lithiated heterocycles to O-perbenzylated 2-nitro-glucal. Reduction of the adducts and, where necessary, subsequent protecting group manipulations furnished the above C-glucosaminyl heterocycles in their O-perbenzylated, O-perbenzoylated and O-unprotected forms. The derived complexes were tested on A2780 ovarian cancer cells. Pyridine, pyrazine and pyridazine-containing complexes proved to be cytostatic and cytotoxic on A2780 cells, while pyrimidine and quinoline derivatives were inactive. The best complexes contained pyridine as the heterocycle. The metal ion with polyhapto arene/arenyl moiety also impacted on the biological activity of the complexes. Ruthenium complexes with p-cymene and iridium complexes with Cp* had the best performance in ovarian cancer cells, followed by osmium complexes with p-cymene and rhodium complexes with Cp*. Finally, the chemical nature of the protective groups on the hydroxyl groups of the carbohydrate moiety were also key determinants of bioactivity; in particular, O-benzyl groups were superior to O-benzoyl groups. The IC50 values of the complexes were in the low micromolar range, and, importantly, the complexes were less active against primary, untransformed human dermal fibroblasts; however, the anticipated therapeutic window is narrow. The bioactive complexes exerted cytostasis on a set of carcinomas such as cell models of glioblastoma, as well as breast and pancreatic cancers. Furthermore, the same complexes exhibited bacteriostatic properties against multiresistant Gram-positive Staphylococcus aureus and Enterococcus clinical isolates in the low micromolar range.
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Affiliation(s)
- István Kacsir
- Department of Organic Chemistry, University of Debrecen, P.O. Box 400, H-4002 Debrecen, Hungary
- Doctoral School of Chemistry, University of Debrecen, P.O. Box 400, H-4002 Debrecen, Hungary
| | - Adrienn Sipos
- Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, Egyetem Tér 1., H-4032 Debrecen, Hungary
- The Hungarian Academy of Sciences, Center of Excellence, Hungary
- MTA-DE Cell Biology and Signaling Research Group ELKH, H-4032 Debrecen, Hungary
| | - Evelin Major
- Department of Metagenomics, University of Debrecen, H-4032 Debrecen, Hungary
| | - Nikolett Bajusz
- Department of Metagenomics, University of Debrecen, H-4032 Debrecen, Hungary
| | - Attila Bényei
- Department of Physical Chemistry, Faculty of Sciences and Technology, University of Debrecen, Egyetem Tér 1., H-4032 Debrecen, Hungary
| | - Péter Buglyó
- Department of Inorganic & Analytical Chemistry, Faculty of Sciences and Technology, University of Debrecen, Egyetem Tér 1., H-4032 Debrecen, Hungary
| | - László Somsák
- Department of Organic Chemistry, University of Debrecen, P.O. Box 400, H-4002 Debrecen, Hungary
| | - Gábor Kardos
- Department of Metagenomics, University of Debrecen, H-4032 Debrecen, Hungary
| | - Péter Bai
- Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, Egyetem Tér 1., H-4032 Debrecen, Hungary
- The Hungarian Academy of Sciences, Center of Excellence, Hungary
- MTA-DE Cell Biology and Signaling Research Group ELKH, H-4032 Debrecen, Hungary
- NKFIH-DE Lendület Laboratory of Cellular Metabolism, H-4032 Debrecen, Hungary
- Research Center for Molecular Medicine, Faculty of Medicine, University of Debrecen, H-4032 Debrecen, Hungary
- Correspondence: (P.B.); (É.B.); Tel.: +36-524-123-45 (P.B.); +36-525-129-00 (ext. 22474) (É.B.)
| | - Éva Bokor
- Department of Organic Chemistry, University of Debrecen, P.O. Box 400, H-4002 Debrecen, Hungary
- Correspondence: (P.B.); (É.B.); Tel.: +36-524-123-45 (P.B.); +36-525-129-00 (ext. 22474) (É.B.)
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121
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Saisin S, Panthong K, Hongthong S, Kuhakarn C, Thanasansurapong S, Chairoungdua A, Suksen K, Akkarawongsapat R, Napaswad C, Prabpai S, Nuntasaen N, Reutrakul V. Pyranonaphthoquinones and Naphthoquinones from the Stem Bark of Ventilago harmandiana and Their Anti-HIV-1 Activity. JOURNAL OF NATURAL PRODUCTS 2023; 86:498-507. [PMID: 36787536 PMCID: PMC10043937 DOI: 10.1021/acs.jnatprod.2c00980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Indexed: 06/18/2023]
Abstract
Seven previously undescribed compounds, including five pyranonaphthoquinones (ventilanones L-P) and two naphthoquinones (ventilanones Q and R), along with 15 known compounds were isolated from the stem bark of Ventilago harmandiana (Rhamnaceae). The structures were established by extensive analysis of their spectroscopic data. The absolute configuration of ventilanone L was established from single crystal X-ray crystallographic analysis using Cu Kα radiation and from its electronic circular dichroism data. Anti-HIV-1 activity using a syncytium inhibition assay and the cytotoxic activities of some isolated compounds were evaluated. Compounds 12, 13, 15, and 16 showed activity against syncytium formation with half maximal effective concentration (EC50) values ranging from 9.9 to 47 μM (selectivity index (SI) 2.4-4.5).
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Affiliation(s)
- Suwannee Saisin
- Department
of Chemistry and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Kanda Panthong
- Division
of Physical Sciences and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Prince
of Songkla University, Songkhla 90112, Thailand
| | - Sakchai Hongthong
- Division
of Chemistry, Faculty of Science and Technology, Rajabhat Rajanagarindra University, Chachoengsao 24000, Thailand
| | - Chutima Kuhakarn
- Department
of Chemistry and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Sariyarach Thanasansurapong
- Department
of Chemistry and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Arthit Chairoungdua
- Department
of Physiology, Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Kanoknetr Suksen
- Department
of Physiology, Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Radeekorn Akkarawongsapat
- Department
of Microbiology, Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Chanita Napaswad
- Department
of Microbiology, Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Samran Prabpai
- Department
of Chemistry and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
| | - Narong Nuntasaen
- The Forest
Herbarium National Park, Wildlife and Plant Conservation Department, Ministry of Natural Resources and Environment, Bangkok 10900, Thailand
| | - Vichai Reutrakul
- Department
of Chemistry and Center of Excellence for Innovation in Chemistry
(PERCH-CIC), Faculty of Science, Mahidol
University, Rama VI Road, Bangkok 10400, Thailand
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122
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Retailleau P, Numbi Wa Ilunga E, Fontaine V, Gallard JF, Le Pogam P. Clarifying the Configuration of Pandamine by an Extensive Spectroscopic Reinvestigation of the Authentic 1964 Sample. Metabolites 2023; 13:metabo13040470. [PMID: 37110129 PMCID: PMC10147048 DOI: 10.3390/metabo13040470] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 03/04/2023] [Accepted: 03/22/2023] [Indexed: 04/29/2023] Open
Abstract
Since its partial configurational assignment in 1964, pandamine has not been isolated or obtained by total synthesis. For decades, different works representing the structure of pandamine for illustrative purposes have lent different configurations to this molecule, causing tenacious confusion about the structure of this ansapeptide. A comprehensive spectroscopic analysis of the authentic pandamine sample led to the complete and unambiguous assignment of its configuration, 59 years after its isolation. In addition to ascertaining and completing the initial structural deductions by a state-of-the-art set of analytical techniques, the purpose of this study is also to clarify the literature in a context in which various erroneous structures have been attributed to pandamine for half a century. While fully in agreement with Goutarel's conclusions, the specific example of pandamine should serve as a cautionary tale to any chemist interested in natural products, encouraging access to initial structural assignments rather than relying solely on subsequent, possibly erroneous, structure depictions of a natural product.
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Affiliation(s)
- Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay, 91198 Gif-sur-Yvette, France
| | - Evodie Numbi Wa Ilunga
- Microbiology, Bioorganic and Macromolecular Chemistry Unit, Université Libre de Bruxelles (ULB), Faculty of Pharmacy, Campus Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
| | - Véronique Fontaine
- Microbiology, Bioorganic and Macromolecular Chemistry Unit, Université Libre de Bruxelles (ULB), Faculty of Pharmacy, Campus Plaine, Boulevard du Triomphe, 1050 Bruxelles, Belgium
| | - Jean-François Gallard
- Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay, 91198 Gif-sur-Yvette, France
| | - Pierre Le Pogam
- Équipe "Chimie des Substances Naturelles" BioCIS, CNRS, Université Paris-Saclay, 17 Avenue des Sciences, 91400 Orsay, France
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123
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Behring L, Ruiz-Gómez G, Trapp C, Morales M, Wodtke R, Köckerling M, Kopka K, Pisabarro MT, Pietzsch J, Löser R. Dipeptide-Derived Alkynes as Potent and Selective Irreversible Inhibitors of Cysteine Cathepsins. J Med Chem 2023; 66:3818-3851. [PMID: 36867428 PMCID: PMC10041539 DOI: 10.1021/acs.jmedchem.2c01360] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
The potential of designing irreversible alkyne-based inhibitors of cysteine cathepsins by isoelectronic replacement in reversibly acting potent peptide nitriles was explored. The synthesis of the dipeptide alkynes was developed with special emphasis on stereochemically homogeneous products obtained in the Gilbert-Seyferth homologation for C≡C bond formation. Twenty-three dipeptide alkynes and 12 analogous nitriles were synthesized and investigated for their inhibition of cathepsins B, L, S, and K. Numerous combinations of residues at positions P1 and P2 as well as terminal acyl groups allowed for the derivation of extensive structure-activity relationships, which were rationalized by computational covalent docking for selected examples. The determined inactivation constants of the alkynes at the target enzymes span a range of >3 orders of magnitude (3-10 133 M-1 s-1). Notably, the selectivity profiles of alkynes do not necessarily reflect those of the nitriles. Inhibitory activity at the cellular level was demonstrated for selected compounds.
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Affiliation(s)
- Lydia Behring
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
- Technische Universität Dresden, School of Science, Faculty of Chemistry and Food Chemistry, Mommsenstraße 4, 01069 Dresden, Germany
| | - Gloria Ruiz-Gómez
- BIOTEC, Technische Universität Dresden, Tatzberg 47-51, 01307 Dresden, Germany
| | - Christian Trapp
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Maryann Morales
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Robert Wodtke
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Martin Köckerling
- Institute of Chemistry, University of Rostock, Albert-Einstein-Straße 3a, 18059 Rostock, Germany
| | - Klaus Kopka
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
- Technische Universität Dresden, School of Science, Faculty of Chemistry and Food Chemistry, Mommsenstraße 4, 01069 Dresden, Germany
| | - M Teresa Pisabarro
- BIOTEC, Technische Universität Dresden, Tatzberg 47-51, 01307 Dresden, Germany
| | - Jens Pietzsch
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
- Technische Universität Dresden, School of Science, Faculty of Chemistry and Food Chemistry, Mommsenstraße 4, 01069 Dresden, Germany
| | - Reik Löser
- Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiopharmaceutical Cancer Research, Bautzner Landstraße 400, 01328 Dresden, Germany
- Technische Universität Dresden, School of Science, Faculty of Chemistry and Food Chemistry, Mommsenstraße 4, 01069 Dresden, Germany
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124
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Yang SQ, Song Q, Li XM, Li X, Li HL, Meng LH, Wang BG. Antimicrobial polyketides and sesquiterpene lactones from the deep-sea cold-seep-derived fungus Talaromyces minioluteus CS-113 triggered by the histone deacetylase inhibitor SAHA. Org Biomol Chem 2023; 21:2575-2585. [PMID: 36880760 DOI: 10.1039/d3ob00058c] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
Abstract
Seven new highly oxygenated natural products with diverse chemical structural types, including three new glucosidic polyketides, talaminiosides A-C (1-3), a pair of racemic aromatic polyketides, (±)-talaminone A (4a and 4b), two new azaphilone polyketides, (+)-5-chloromitorubrinic acid (5) and 7-epi-purpurquinone C (7), and one new drimane sesquiterpene lactone, 11-hydroxyminioluteumide B (8), together with a pinazaphilone B sodium salt (6) and 10 known compounds (9-18), were isolated and identified from the culture extract of Talaromyces minioluteus CS-113, a fungus obtained from deep-sea cold-seep sediments collected from the South China Sea. LCMS results indicated that compounds 3 and 4 might be produced by the real activation of silent BGCs triggered by the histone deacetylase inhibitor SAHA, and some of the other compounds were enhanced minor components. Their structures were elucidated by the detailed interpretation of NMR spectroscopic and mass spectrometric data, X-ray crystallographic analysis, ECD and specific rotation (SR) calculations, and DP4+ probability analysis. Compound 7, an azaphilone derivative, exhibited potent activities against several agricultural pathogenic fungi with MIC values equivalent or comparable to amphotericin B. The structure-activity relationship of the isolated azaphilones is briefly discussed. This is the first report of the chemical diversity study of deep-sea cold-seep-derived fungi triggered by SAHA, providing a useful strategy for the activation of cryptic fungal metabolites from deep-sea-derived fungi.
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Affiliation(s)
- Sui-Qun Yang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
| | - Qi Song
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
- College of Marine Science, University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, People's Republic of China
| | - Xiao-Ming Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
| | - Xin Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
| | - Hong-Lei Li
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
| | - Ling-Hong Meng
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
| | - Bin-Gui Wang
- CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, and Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao 266071, People's Republic of China.
- College of Marine Science, University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, People's Republic of China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, People's Republic of China
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125
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Petrosyan AM, Giester G, Tonoyan GS. Salts containing different amino acids: four types of salts with the sulfate anion. Struct Chem 2023. [DOI: 10.1007/s11224-023-02154-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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126
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Wark S, Lyons MJ, Slawin AMZ, Harrison WTA. Consistent zincophosphite 4-ring 'ladder' chain structural motif with isomeric ligands. Acta Crystallogr E Crystallogr Commun 2023; 79:272-279. [PMID: 37057029 PMCID: PMC10088307 DOI: 10.1107/s2056989023002062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 03/03/2023] [Indexed: 03/12/2023]
Abstract
The syntheses and crystal structures of four hydro-thermally prepared organo-zinc phosphites, viz. poly[[(2-amino-3-methyl-pyridine)-μ3-phospho-nato-zinc] hemihydrate], {[Zn(HPO3)(C6H8N2)]·0.5H2O} n , (I), poly[(2-amino-4-methyl-pyridine)-μ3-phospho-nato-zinc], [Zn(HPO3)(C6H8N2)] n , (II), poly[(2-amino-5-methyl-pyridine)-μ3-phospho-nato-zinc], [Zn(HPO3)(C6H8N2)] n , (III), and poly[bis-(2-amino-4-methyl-pyridinium) [tetra-μ3-phospho-nato-trizinc] monohydrate], {(C6H9N2)2[Zn3(HPO3)4]·H2O} n , (IV), are described. Compounds (I)-(III) are constructed from vertex-sharing ZnO3N tetra-hedra (the organic mol-ecule acting as a ligand) and HPO3 pseudo pyramids in a 1:1 ratio to generate the same motif of infinite 4-ring 'ladder' chains propagating in the [010], [101] and [100] directions, respectively, whereas (IV) consists of (010) layers of vertex-sharing ZnO4 and HPO3 units in a 3:4 ratio with the protonated organic mol-ecule acting as a template. When an excess of HCl is used in the synthesis, the simple hydrated mol-ecular salt, bis-(2-amino-3-methyl-pyridinium) tetra-chloro-zincate monohydrate, (C6H8N2)2[ZnCl4]·H2O, (V), arises. Com-pounds (I)-(V) feature extensive networks of hydrogen bonds, both classical (N-H⋯O, N-H⋯Cl, O-H⋯O) and non-classical (C-H⋯O, C-H⋯Cl) in nature, which help to consolidate the extended structures.
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Affiliation(s)
- Stephen Wark
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland, United Kingdom
| | - Megan J Lyons
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland, United Kingdom
| | - Alexandra M Z Slawin
- School of Chemistry, University of St Andrews, St Andrews KY16 9ST, Scotland, United Kingdom
| | - William T A Harrison
- Department of Chemistry, University of Aberdeen, Meston Walk, Aberdeen AB24 3UE, Scotland, United Kingdom
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127
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Parkin S, Glidewell C, Horton PN. (E,E)-1,1'-[1,2-Bis(4-chlorophenyl)ethane-1,2-diyl]bis(phenyldiazene) revisited: threefold configurational disorder of (S,S), (R,R) and (S,R) isomers, a detailed critique. Acta Crystallogr C Struct Chem 2023; 79:77-82. [PMID: 36871289 DOI: 10.1107/s2053229623001262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 02/10/2023] [Indexed: 02/17/2023] Open
Abstract
Crystal structures described as concomitant triclinic (I) and monoclinic (II) polymorphs of meso-(E,E)-1,1'-[1,2-bis(4-chlorophenyl)ethane-1,2-diyl]bis(phenyldiazene) [Mohamed et al. (2016). Acta Cryst. C72, 57-62] have been re-investigated. The published model for II was distorted due to forcing the symmetry of space group C2/c on an incomplete structure model. It is shown here to be a likely three-component superposition of S,S and R,R enantiomers with a lesser amount of the meso form. A detailed analysis of how the improbable distortion in the published model aroused suspicion and the subsequent construction of undistorted chemically and crystallographically plausible alternatives having the symmetry of Cc and C2/c is presented. For the sake of completeness, an improved model for the triclinic P-1 structure of the meso isomer I, revised to include a minor disorder component, is also given.
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Affiliation(s)
- Sean Parkin
- Department of Chemistry, University of Kentucky, Lexington, KY 40506-0055, USA
| | | | - Peter N Horton
- School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, United Kingdom
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128
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Sun J, Wang Y, Tang W, Gong J. Enantioselectivity of chiral dihydromyricetin in multicomponent solid solutions regulated by subtle structural mutation. IUCRJ 2023; 10:164-176. [PMID: 36692859 PMCID: PMC9980384 DOI: 10.1107/s2052252523000118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
Multicomponent crystals of a chiral drug with non-chiral components have attracted increasing attention in the application of enantiomer purification and regulation of the physicochemical properties of crystalline materials. Crystalline solid solutions provide opportunities for fine-tuning material properties because of continuously adjustable component stoichiometry ratios. The synthesis, crystal structure, thermodynamics and solid-state enantioselectivity of a series of multicomponent crystals of chiral dihydromyricetin (DMY) with caffeine (CAF) or theophylline (THE) were investigated and the results reveal how the subtle change of molecular structure of the coformer dictates the enantiomer selectivity in multicomponent cocrystals. A series of multicomponent cocrystal solvates of chiral DMY with CAF and THE were synthesized by the slurry cocrystallization method in acetonitrile. Although most racemic mixtures crystallize as racemic compounds or conglomerates, both DMY-CAF and DMY-THE crystallize as chiral solid solutions, unveiled by pseudo-binary melt phase diagrams and pseudo-ternary solution phase diagrams. Crystal structures of Rac-DMY-CAF, R,R-DMY-CAF, Rac-DMY-THE and R,R-DMY-THE are reported for the first time via single-crystal X-ray diffraction, displaying two distinct types of solid solution differing in mixing scale of enantiomers spanning several orders of magnitude. Surprisingly, this remarkable impact on enantiomer discrimination was simply achieved by the reduction of a methyl group of CAF to the THE coformer, which was further rationalized from their crystal structures and intermolecular interactions. Collectively, this work has demonstrated that a subtle change in the molecular structure of a coformer can regulate enantioselectivity in crystalline materials, guiding the purification of chiral racemic compounds via the cocrystallization method and the design of solid-solution crystalline materials.
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Affiliation(s)
- Jie Sun
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, The Co-Innovation Center of Chemistry and Chemical Engineering of Tianjin, Tianjin University, Weijin Road, Tianjin 300072, People’s Republic of China
| | - Yaoguo Wang
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, The Co-Innovation Center of Chemistry and Chemical Engineering of Tianjin, Tianjin University, Weijin Road, Tianjin 300072, People’s Republic of China
| | - Weiwei Tang
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, The Co-Innovation Center of Chemistry and Chemical Engineering of Tianjin, Tianjin University, Weijin Road, Tianjin 300072, People’s Republic of China
| | - Junbo Gong
- School of Chemical Engineering and Technology, State Key Laboratory of Chemical Engineering, The Co-Innovation Center of Chemistry and Chemical Engineering of Tianjin, Tianjin University, Weijin Road, Tianjin 300072, People’s Republic of China
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129
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Maldonado T, Ferraudi G, Graham Lappin A, Oliver AG. Comparison of the photochemical properties of phthalocyanine and hemiporphyrazine Zn(II) complexes. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2023.114715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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130
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Parkin S, Cunningham J, Rawls B, Bender JE, Staples RJ, Biros SM. A mixed phosphine sulfide/selenide structure as an instructional example for how to evaluate the quality of a model. Acta Crystallogr E Crystallogr Commun 2023; 79:246-253. [PMID: 37057016 PMCID: PMC10088320 DOI: 10.1107/s2056989023002700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Accepted: 03/22/2023] [Indexed: 04/15/2023]
Abstract
This paper compares variations on a structure model derived from an X-ray diffraction data set from a solid solution of chalcogenide derivatives of cis-1,2-bis-(di-phenyl-phosphan-yl)ethyl-ene, namely, 1,2-(ethene-1,2-di-yl)bis-(di-phenyl-phoshpine sulfide/selenide), C26H22P2S1.13Se0.87. A sequence of processes are presented to ascertain the composition of the crystal, along with strategies for which aspects of the model to inspect to ensure a chemically and crystallographically realistic structure. Criteria include mis-matches between F obs 2 and F calc 2, plots of |F obs| vs |F calc|, residual electron density, checkCIF alerts, pitfalls of the OMIT command used to suppress ill-fitting data, comparative size of displacement ellipsoids, and critical inspection of inter-atomic distances. Since the structure is quite small, solves easily, and presents a number of readily expressible refinement concepts, we feel that it would make a straightforward and concise instructional piece for students learning how to determine if their model provides the best fit for the data and show students how to critically assess their structures.
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Affiliation(s)
- Sean Parkin
- Department of Chemistry, University of Kentucky, Lexington, KY, 40506, USA
| | - Jeremy Cunningham
- Department of Chemistry, Grand Valley State University, Allendale, MI 49401, USA
| | - Brian Rawls
- Department of Chemistry, Grand Valley State University, Allendale, MI 49401, USA
| | - John E. Bender
- Department of Chemistry, Grand Valley State University, Allendale, MI 49401, USA
| | - Richard J. Staples
- Center for Crystallographic Research, Department of Chemistry, Michigan State University, East Lansing, MI 48824, USA
| | - Shannon M. Biros
- Department of Chemistry, Grand Valley State University, Allendale, MI 49401, USA
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131
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Okmanov RY, Olimova MI, Karabaeva SB, Sapaev FA, Abdireymov KB. Syntheses, crystal structures and Hirshfeld surface analyses of N-aryl-sulfonyl derivatives of cytisine. Acta Crystallogr E Crystallogr Commun 2023; 79:313-318. [PMID: 37057015 PMCID: PMC10088325 DOI: 10.1107/s2056989023001950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 03/02/2023] [Indexed: 03/12/2023]
Abstract
By aryl-sulfonyl-ation of cytisine in the presence of tri-ethyl-amine, three new compounds have been obtained in good yields: (7R,9R)-N-[(4-ethyl-phen-yl)sulfon-yl]cytisine, C19H22N2O3S (I) {systematic name: (1R,5R)-3-[(4-ethyl-phen-yl)sulfon-yl]-1,2,3,4,5,6-hexa-hydro-8H-1,5-methano-pyrido[1,2-a][1,5]diazo-cin-8-one}, (7R,9R)-N-[(4-chloro-phen-yl)sulfon-yl]cytisine, C17H17ClN2O3S (II) {systematic name: (1R,5R)-3-[(4-chloro-phen-yl)sulfon-yl]-1,2,3,4,5,6-hexa-hydro-8H-1,5-methano-pyrido[1,2-a][1,5]diazo-cin-8-one} and (7R,9R)-N-[(3-nitro-phen-yl)sulfon-yl]cytisine, C17H17N3O5S (III) {systematic name: (1R,5R)-3-[(3-nitro-phen-yl)sulfon-yl]-1,2,3,4,5,6-hexa-hydro-8H-1,5-methano-pyrido[1,2-a][1,5]diazo-cin-8-one}. The crystal structures of the compounds were determined on the basis of single-crystal X-ray diffraction data. The crystal structures of (I)-(III) are distinguished by the arrangement of two fragments of the mol-ecule around the sulfonyl site. For all structures, weak C-H⋯O hydrogen bonds are developed. Hirshfeld surface analysis shows that H⋯H (for I and II) and H⋯O/O⋯H (for III) inter-actions make the most important contribution to the crystal packing.
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Affiliation(s)
- Rasul Ya. Okmanov
- S. Yunusov Institute of the Chemistry of Plant Substances, Academy of Sciences of Uzbekistan, Mirzo Ulugbek Str. 77, Tashkent, 100170, Uzbekistan
- National University of Uzbekistan named after Mirzo Ulugbek, massif Universitet shakharchasi 4, Tashkent, 100174, Uzbekistan
| | - Manzura I. Olimova
- S. Yunusov Institute of the Chemistry of Plant Substances, Academy of Sciences of Uzbekistan, Mirzo Ulugbek Str. 77, Tashkent, 100170, Uzbekistan
| | - Surayyo B. Karabaeva
- National University of Uzbekistan named after Mirzo Ulugbek, massif Universitet shakharchasi 4, Tashkent, 100174, Uzbekistan
| | - Frunza A. Sapaev
- National University of Uzbekistan named after Mirzo Ulugbek, massif Universitet shakharchasi 4, Tashkent, 100174, Uzbekistan
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132
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Li J, Deng Z, Li B, Ou J, Zhu X. The crystal structure of catena–poly[aqua(1-naphthoato- κ
2
O, O′)-( μ-1-naphthoato- κ
4
O: O, O′: O′)lead(II)], C 22H 16O 5Pb. Z KRIST-NEW CRYST ST 2023. [DOI: 10.1515/ncrs-2023-0032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Abstract
C22H16O5Pb, orthorhombic, P212121 (no. 19), a = 7.3395(8) Å, b = 10.7768(11) Å, c = 23.034(3) Å, V = 1821.9(3) Å3, Z = 4, R
gt(F) = 0.0327, wR
ref(F
2) = 0.0735, T = 296(2) K.
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Affiliation(s)
- Jiahong Li
- School of Chemistry and Materials Science , Hengyang Normal University , Hengyang , Hunan 421008 , China
| | - Zheyu Deng
- School of Chemistry and Materials Science , Hengyang Normal University , Hengyang , Hunan 421008 , China
| | - Biao Li
- School of Chemistry and Materials Science , Hengyang Normal University , Hengyang , Hunan 421008 , China
| | - Jiaqi Ou
- School of Chemistry and Materials Science , Hengyang Normal University , Hengyang , Hunan 421008 , China
| | - Xiaoming Zhu
- School of Chemistry and Materials Science , Hengyang Normal University , Hengyang , Hunan 421008 , China
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133
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Mossine VV, Kelley SP, Waters JK, Mawhinney TP. Screening a small hydrazide-hydrazone combinatorial library for targeting the STAT3 in monocyte-macrophages with insulated reporter transposons. Med Chem Res 2023. [DOI: 10.1007/s00044-023-03028-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
AbstractThe Signal Transducer and Activator of Transcription 3 (STAT3) pharmacological targeting is regarded as a prospective approach to treat cancer, autoimmune disorders, or inflammatory diseases. We have developed a series of reporters of the STAT3, NF-κB, Nrf2, metal-responsive transcription factor-1 (MTF-1), and hypoxia-inducible factor 1α (HIF-1α) transcriptional activation in human monocyte-macrophage line THP-1. The reporter lines were employed to test a set of hydrazide-hydrazones as potential STAT3 inhibitors. A hydrazide-hydrazone library composed of 70 binary combinations of 7 carbonyl and 10 hydrazide components, including a STAT3 inhibitor clinical drug nifuroxazide, has been assembled and screened by the reporters. For the library as a whole, significant correlations between responses of the STAT3 and NF-κB or the STAT3 and HIF-1α reporters in THP-1 monocytes were found. For selected inhibitory combinations, respective hydrazide-hydrazones have been prepared and tested individually. The most potent 2-acetylpyridine 4-chlorobenzoylhydrazone exhibited the STAT3 inhibitory potential significantly exceeding that of nifuroxazide (ED50 2 vs 50 μM respectively) in THP-1 cells. We conclude that insulated reporter transposons could be a useful tool for drug discovery applications.
Graphical Abstract
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134
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Aguinaga U, Oyinwola FJ, Childs MJ, Aldarkazanly S, Yousufuddin M. Benzyl-hexa-decyl-dimethyl-ammonium chloride dihydrate. IUCRDATA 2023; 8:x230096. [PMID: 36911083 PMCID: PMC9993895 DOI: 10.1107/s2414314623000962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 02/02/2023] [Indexed: 02/11/2023] Open
Abstract
The title compound, C25H46N+·Cl-·2H2O, crystallizes in the space group P21 with one organic mol-ecule in the asymmetric unit. The compound belongs to a class of benzalkonium chlorides (BACs) with an alkyl chain length of 16 carbon atoms in an all-trans conformation.
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Affiliation(s)
- Ulises Aguinaga
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Festus J. Oyinwola
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Malik J. Childs
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Sara Aldarkazanly
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Muhammed Yousufuddin
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
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135
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Zhang K, Shi DB. Crystal structure of dimethyl 4,4′-((4 R, 5 R)-4,5-diphenylimidazolidine-1,3-diyl)dibenzoate, C 31H 28N 2O 4. Z KRIST-NEW CRYST ST 2023. [DOI: 10.1515/ncrs-2023-0001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Abstract
C31H28N2O4, monoclinic, P21 (no. 4), a = 10.2166(2) Å, b = 11.5327(2) Å, c = 11.6484(2) Å, β = 109.637(2)°, V = 1292.65(5) Å3, Z = 2, R
gt
(F) = 0.0502, wR
ref
(F
2) = 0.1312, T = 149.9(5) K.
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Affiliation(s)
- Kui Zhang
- School of Pharmaceutical Sciences, Zunyi Medical University , Zunyi 563000 , People’s Republic of China
| | - Da-Bin Shi
- School of Pharmaceutical Sciences, Zunyi Medical University , Zunyi 563000 , People’s Republic of China
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136
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Sample HC, Twamley B, Senge MO. Structures of S-(pyridin-2-yl) 4-nitro-benzo-thio-ate, S-(pyridin-2-yl) 4-methyl-benzo-thio-ate and S-(pyridin-2-yl) 4-meth-oxy-benzo-thio-ate: building blocks for low-symmetry multifunctional tetra-pyrroles. Acta Crystallogr E Crystallogr Commun 2023; 79:157-162. [PMID: 36909990 PMCID: PMC9993908 DOI: 10.1107/s2056989023001056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 02/03/2023] [Indexed: 02/11/2023]
Abstract
The crystal structures of three S-(pyridin-2-yl) benzo-thio-esters with varying para-phenyl substituents are presented, namely, S-(pyridin-2-yl) 4-nitro-benzo-thio-ate (1, C12H8N2O3S), S-(pyridin-2-yl) 4-methyl-benzo-thio-ate (2, C13H11NO2S) and S-(pyridin-2-yl) 4-meth-oxy-benzo-thio-ate (3, C13H11NO2S). This class of compounds are used in the mono-acyl-ation of pyrrolic species to yield multifunctional tetra-pyrroles. The structures presented herein are the first of their compound class. The dominant inter-actions present in this series are π-π stacking and C-H⋯O inter-actions, and as the para-phenyl motif changes from electron withdrawing (NO2, 1) to electron donating (OCH3, 3), changes are observed in the inter-actions present in the crystal packing, from predominant π-π stacking in 1 to exclusively C-H⋯O/N inter-actions (Car-yl-H⋯Ocarbon-yl, C-H⋯Ometh-oxy and Car-yl-H⋯Npyridine) in 3.
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Affiliation(s)
- Harry C. Sample
- School of Chemistry, Chair of Organic Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse St, D02 R590, Dublin, Ireland
| | - Brendan Twamley
- School of Chemistry, Trinity College Dublin, College Green, Dublin 2, Ireland
| | - Mathias O. Senge
- School of Chemistry, Chair of Organic Chemistry, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160 Pearse St, D02 R590, Dublin, Ireland
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137
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Deleon CP, Ramirez AD, Gonzalez D, Ghosh A, Kürti L, Yousufuddin M. Diisopropyl 2-[(4-nitro-benzo-yl)amino]-propane-dioate. IUCRDATA 2023; 8:x230104. [PMID: 36911082 PMCID: PMC9993896 DOI: 10.1107/s2414314623001049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 02/03/2023] [Indexed: 02/16/2023] Open
Abstract
The title compound, C16H20N2O7, crystallizes in the space group C2 with two mol-ecules in the asymmetric unit. The crystal packing shows O⋯π inter-actions between the two mol-ecules.
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Affiliation(s)
- Cristi P. Deleon
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Anthony D. Ramirez
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Diana Gonzalez
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
| | - Arghya Ghosh
- Rice University, 7400 University Hills Blvd., Houston, TX 77030, USA
| | - László Kürti
- Rice University, 7400 University Hills Blvd., Houston, TX 77030, USA
| | - Muhammed Yousufuddin
- University of North Texas at Dallas, 7400 University Hills Blvd., Dallas, TX 75241, USA
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138
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Kaiser M, Weil M, Gärtner P, Enev V. Crystal structures of two 1,2,3,4-tetra-hydro-naphthalenes obtained during efforts towards the total synthesis of elisabethin A. Acta Crystallogr E Crystallogr Commun 2023; 79:177-181. [PMID: 36909998 PMCID: PMC9993920 DOI: 10.1107/s2056989023001226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 02/10/2023] [Indexed: 02/19/2023]
Abstract
The two substituted 1,2,3,4-tetra-hydro-naphthalenes, methyl (R)-3-{(1R,4S)-6-meth-oxy-4,7-dimethyl-5,8-bis-[(triiso-propyl-sil-yl)-oxy]-1,2,3,4-tetra-hydro-naph-th-al-en-1-yl}butano-ate, C36H66O5Si2, (2), and methyl (E)-3-{(1R,4S)-8-hy-droxy-6-meth-oxy-4,7-dimethyl-5-[(triiso-propyl-sil-yl)-oxy]-1,2,3,4-tetra-hydro-naphthalen-1-yl}acrylate, C26H42O5Si, (8), crystallize in the Sohncke space groups P212121 and P21, respectively, with the absolute structure determined on the basis of anomalous dispersion effects. The configurations of the stereo centres in the 1,2,3,4-tetra-hydro-naphthalene moiety of (2) and (8) are the same, and the conformation of the non-aromatic part of the ring system is nearly identical. In the crystal of (2), weak non-classical C-H⋯O inter-actions consolidate the packing, whereas in (8), inter-molecular O-H⋯O hydrogen-bonding inter-actions of medium-to-weak strength direct the mol-ecules into Z-shaped strands extending parallel to [010].
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Affiliation(s)
- Maximilian Kaiser
- Institute of Applied Synthetic Chemistry, Research Group for Stereoselective and Sustainable Chemistry, TU Wien, Getreidemarkt 9/E163-03-03, A-1060 Vienna, Austria
| | - Matthias Weil
- Institute for Chemical Technologies and Analytics, Division of Structural Chemistry, TU Wien, Getreidemarkt 9/E164-05-01, A-1060 Vienna, Austria
| | - Peter Gärtner
- Institute of Applied Synthetic Chemistry, Research Group for Stereoselective and Sustainable Chemistry, TU Wien, Getreidemarkt 9/E163-03-03, A-1060 Vienna, Austria
| | - Valentin Enev
- Institute of Applied Synthetic Chemistry, Research Group for Stereoselective and Sustainable Chemistry, TU Wien, Getreidemarkt 9/E163-03-03, A-1060 Vienna, Austria
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139
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Erzunov D, Rassolova A, Rumyantsev R, Maizlish V, Tikhomirova T, Vashurin A. Crystal structures of 4-(2/3-meth-oxy-phen-oxy)phthalo-nitrile. Acta Crystallogr E Crystallogr Commun 2023; 79:172-176. [PMID: 36910004 PMCID: PMC9993919 DOI: 10.1107/s2056989023000518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 01/20/2023] [Indexed: 02/19/2023]
Abstract
The syntheses and crystal structures are reported of 4-phen-oxy-substituted phthalo-nitriles with meth-oxy groups in the ortho- and meta-positions of the terminal benzene rings, respectively, namely, 4-(2-meth-oxy-phen-oxy)phthalo-nitrile and 4-(3-meth-oxy-phen-oxy)phthalo-nitrile, both C15H10N2O2. The https://journals.iucr.org/e/issues/2023/03/00/mol-ecular structure was determined using the single-crystal X-ray diffraction method. It is shown that short contacts play a more decisive role in the mol-ecular packing compared to van der Waals inter-actions.
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Affiliation(s)
- Dmitry Erzunov
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - Anastasia Rassolova
- Department of Fine Tune Synthesis, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - Roman Rumyantsev
- Sector of X-ray Diffraction Research, Razuvaev Institute of Metalloorganic Chemistry, Nizhnii Novgorod, Russian Federation
| | - Vladimir Maizlish
- Department of Fine Tune Synthesis, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - Tatiana Tikhomirova
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - Arthur Vashurin
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
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140
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Nechipadappu SK, Balasubramanian S. Solid-state versatility in tranexamic acid drug: structural and thermal behavior of new salts and cocrystals. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2023; 79:78-97. [PMID: 36748901 DOI: 10.1107/s2052520622011969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 12/18/2022] [Indexed: 01/21/2023]
Abstract
Tranexamic acid (TNA) is an anti-fibrinolytic hemostatic drug widely used in various medical treatments. Six new salts and five cocrystals of TNA are reported here and the crystal structures of the obtained multicomponent compounds were determined using single-crystal X-ray diffraction (SC-XRD) techniques. TNA formed salts with coformers maleic acid (MEA), nicotinic acid, DL-mandelic acid and saccharin. Salt formation with MEA resulted in three different solid forms, namely TNA-MEA (1:1), TNA-MEA (2:1) and TNA-MEA-H2O (1:1:1). All synthesized TNA salt structures were crystallized as anhydrous except for TNA-MEA-H2O (1:1:1). TNA formed cocrystals with phenolic coformers such as catechol (CAT), resorcinol, hydroquinone, pyrogallol (PRG) and phloroglucinol. All cocrystal structures crystallized as hydrates except for TNA-PRG (1:1). The detailed structural investigation using SC-XRD revealed the presence of robust N-H...O and O-H...O hydrogen bonds in TNA salts and cocrystals. In TNA cocrystals, except for TNA-CAT-H2O (1:1:1), the coformer molecules interact with TNA molecules via bridged water molecules. In all the salt structures, TNA exists as cations, in which both carboxylic and amino groups are protonated (-COOH and -NH3+), while in cocrystals TNA exists as zwitterions with total charge zero. All synthesized multicomponent compounds were further characterized by differential scanning calorimetric, thermogravimetric and Fourier transform infrared analyses, and the formation of new multicomponent compounds were assessed based on the melting temperatures, percentage weight loss and stretching frequencies, respectively, corresponding to TNA/coformer molecules. A powder X-ray diffraction study confirmed the bulk purity of the synthesized crystalline multicomponent compounds.
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Affiliation(s)
- Sunil Kumar Nechipadappu
- Centre for X-ray Crystallography, Department of Analytical and Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad, Telangana 500007, India
| | - Sridhar Balasubramanian
- Centre for X-ray Crystallography, Department of Analytical and Structural Chemistry, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad, Telangana 500007, India
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141
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Pan T, Shi DB. Crystal structure of dimethyl 4,4′-(((1 R, 2 R)-cyclohexane-1,2-diyl)bis(azanediyl))dibenzoate, C 22H 26N 2O 4. Z KRIST-NEW CRYST ST 2023. [DOI: 10.1515/ncrs-2023-0008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Abstract
C22H26N2O4, trigonal, P32 (no. 145), a = 8.0196(2) Å, c = 26.2366(5) Å, V = 1461.31(8) Å3, Z = 3, R
gt(F) = 0.0290, wR
ref(F
2) = 0.0829, T = 149.99(10) K.
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Affiliation(s)
- Ting Pan
- School of Pharmaceutical Sciences, Zunyi Medical University , Zunyi 563000 , People’s Republic of China
| | - Da-Bin Shi
- School of Pharmaceutical Sciences, Zunyi Medical University , Zunyi 563000 , People’s Republic of China
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142
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Näther C, Jess I. Syntheses and crystal structures of bis-(4-methyl-pyridine-κ N)bis-(seleno-cyanato-κ N)zinc(II) and catena-poly[[bis-(4-methyl-pyridine-κ N)cadmium(II)]-di-μ-seleno-cyanato-κ 2 N: Se;κ 2 Se: N]. Acta Crystallogr E Crystallogr Commun 2023; 79:136-141. [PMID: 36910001 PMCID: PMC9993905 DOI: 10.1107/s2056989023000920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 02/01/2023] [Indexed: 02/10/2023]
Abstract
The reactions of Zn(NO3)2 .6H2O and Cd(NO3)2 .4H2O with KSeCN and 4-meth-yl-pyridine (C6H7N; 4-picoline) lead to the formation of crystals of bis-(4-methyl-pyridine-κN)bis-(seleno-cyanato-κN)zinc(II), [Cd(NCSe)2(C6H7N)2] (1), and catena-poly[[bis-(4-methyl-pyridine-κN)cadmium(II)]-di-μ-seleno-cyanato-κ2 N:Se;κ2 Se:N], [Cd(NCSe)2(C6H7N)2] n (2), suitable for single-crystal X-ray diffraction. The asymmetric unit of compound 1 consists of one Zn cation that is located on a twofold rotation axis as well as one seleno-cyanate anion and one 4-methyl-pyridine ligand in general positions. The Zn cations are tetra-hedrally coordinated by two terminal N-bonding thio-cyanate anions and two 4-methyl-pyridine ligands, forming discrete complexes. The asymmetric unit of compound 2 consists of two crystallographically independent Cd cations, of which one is located on a twofold rotation axis and the second on a center of inversion, as well as two crystallographically independent seleno-cyanate anions and two crystallographically independent 4-methyl-pyridine ligands in general positions. The Cd cations are octa-hedrally coordinated by two N- and two S-bonding seleno-cyanate anions and two 4-methyl-pyridine ligands and are linked into chains by pairs of seleno-cyanate anions. Within the chains, the Cd cations show an alternating cis-cis-trans and all-trans coordination and therefore, the chains are corrugated. PXRD investigations prove that the Zn compound was obtained as a pure phase and that the Cd compound contains a very small amount of an additional and unknown phase. In the IR spectrum of 1, the CN stretching vibration of the seleno-cyanate anion is observed at 2072 cm-1, whereas in the 2 it is shifted to 2094 cm-1, in agreement with the crystal structures.
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Affiliation(s)
- Christian Näther
- Institut für Anorganische Chemie, Universität Kiel, Max-Eyth Str. 2, 24118 Kiel, Germany
| | - Inke Jess
- Institut für Anorganische Chemie, Universität Kiel, Max-Eyth Str. 2, 24118 Kiel, Germany
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143
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Mossine VV, Kelley SP, Mawhinney TP. 2-Bromo-6-hydrazinyl-pyridine. IUCRDATA 2023; 8:x230169. [PMID: 36911079 PMCID: PMC9993890 DOI: 10.1107/s2414314623001694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 02/23/2023] [Indexed: 03/11/2023] Open
Abstract
The title compound, C5H6BrN3, crystallizes in the ortho-rhom-bic space group P212121 with two mol-ecules with different conformations in the asymmetric unit. In the crystal, N-H⋯N and bifurcated N-H⋯(N,N) hydrogen bonds link the mol-ecules into [100] chains; a short Br⋯Br halogen bond and π-π stacking inter-actions are also observed.
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Affiliation(s)
- Valeri V. Mossine
- Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA
| | - Steven P. Kelley
- Department of Chemistry, University of Missouri, Columbia, MO 65211, USA
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144
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Raičević V, Radnović ND, Rodić MV, Radulović NS. The crystal structure of 3-hydroxy-2-nitroestra-1,3,5(10)-trien-17-one, C 18H 21NO 4. Z KRIST-NEW CRYST ST 2023. [DOI: 10.1515/ncrs-2022-0602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Abstract
C18H21NO4, orthorhombic, C2221 (no. 20), a = 10.6891(2) Å, b = 11.8375(2) Å, c = 25.4410(4) Å, V = 3219.11(10) Å3, Z = 8, R
gt(F) = 0.0483, wR
ref(F
2) = 0.1449, T = 295 K.
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Affiliation(s)
- Vidak Raičević
- Faculty of Sciences, University of Novi Sad , Trg Dositeja Obradovića 3, 21000 Novi Sad , Serbia
| | - Nikola D. Radnović
- Faculty of Sciences, University of Novi Sad , Trg Dositeja Obradovića 3, 21000 Novi Sad , Serbia
| | - Marko V. Rodić
- Faculty of Sciences, University of Novi Sad , Trg Dositeja Obradovića 3, 21000 Novi Sad , Serbia
| | - Niko S. Radulović
- Faculty of Sciences and Mathematics, University of Niš , Višegradska 33, 18000 Niš , Serbia
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145
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Yang Z, Sun X, Jin D, Qiu Y, Chen L, Sun L, Gu W. Novel Camphor Sulfonohydrazide and Sulfonamide Derivatives as Potential Succinate Dehydrogenase Inhibitors against Phytopathogenic Fungi/Oomycetes. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:174-185. [PMID: 36562624 DOI: 10.1021/acs.jafc.2c05628] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
To discover novel fungicidal agrochemicals for treating wheat scab, 39 novel camphor sulfonohydrazide/sulfonamide derivatives 4a-4t and 6a-6s were designed and synthesized. In the in vitro antifungal/antioomycete assay, compounds 4g, 4n, and 4o displayed significant inhibitory activities against Fusarium graminearum, Botryosphaeria dothidea, and Phytophthora capsici. Among them, 4n exhibited the best antifungal activity against F. graminearum with an EC50 value of 0.41 mg/L, which was at the same level as that of pydiflumetofen. The in vivo experiment revealed that 4n presented excellent protective and curative efficacy toward F. graminearum. In the antifungal mechanism study, 4n could increase the cell membrane permeability and reduce the exopolysaccharide and ergosterol content of F. graminearum. Scanning electron microscopy (SEM) and transmission electron microscopy (TEM) analyses revealed that 4n could significantly damage the surface morphology and the cell ultrastructure of mycelia to interfere with the growth of F. graminearum. Furthermore, 4n exhibited potent succinate dehydrogenase (SDH) inhibitory activity in vitro with an IC50 value of 3.94 μM, which was equipotent to pydiflumetofen (IC50 = 4.07 μM). The molecular dynamics simulation and docking study suggested that compound 4n could well occupy the active site and form strong interactions with the key residues of SDH. The above-mentioned results demonstrated that the title camphor sulfonohydrazide/sulfonamide derivatives could be promising lead compounds for further succinate dehydrogenase inhibitor (SDHI) fungicide development.
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Affiliation(s)
- Zihui Yang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Xuebao Sun
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Daojun Jin
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Yigui Qiu
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Linlin Chen
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Lu Sun
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
| | - Wen Gu
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, Jiangsu Provincial Key Laboratory for the Chemistry and Utilization of Agro-forest Biomass, Jiangsu Key Laboratory of Biomass-Based Green Fuels and Chemicals, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, China
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146
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Wang X, Zhang C, Madji R, Voros C, Mazères S, Bijani C, Deraeve C, Cuvillier O, Gornitzka H, Maddelein ML, Hemmert C. N-Heterocyclic Carbene-Iridium Complexes as Photosensitizers for In Vitro Photodynamic Therapy to Trigger Non-Apoptotic Cell Death in Cancer Cells. MOLECULES (BASEL, SWITZERLAND) 2023; 28:molecules28020691. [PMID: 36677751 PMCID: PMC9861386 DOI: 10.3390/molecules28020691] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 01/02/2023] [Accepted: 01/03/2023] [Indexed: 01/13/2023]
Abstract
A series of seven novel iridium complexes were synthetized and characterized as potential photosensitizers for photodynamic therapy (PDT) applications. Among them, four complexes were evaluated in vitro for their anti-proliferative activity with and without irradiation on a panel of five cancer cell lines, namely PC-3 (prostate cancer), T24 (bladder cancer), MCF7 (breast cancer), A549 (lung cancer) and HeLa (cervix cancer), and two non-cancerous cell models (NIH-3T3 fibroblasts and MC3T3 osteoblasts). After irradiation at 458 nm, all tested complexes showed a strong selectivity against cancer cells, with a selectivity index (SI) ranging from 8 to 34 compared with non-cancerous cells. The cytotoxic effect of all these complexes was found to be independent of the anti-apoptotic protein Bcl-xL. The compound exhibiting the best selectivity, complex 4a, was selected for further investigations. Complex 4a was mainly localized in the mitochondria. We found that the loss of cell viability and the decrease in ATP and GSH content induced by complex 4a were independent of both Bcl-xL and caspase activation, leading to a non-apoptotic cell death. By counteracting the intrinsic or acquired resistance to apoptosis associated with cancer, complex 4a could be an interesting therapeutic alternative to be studied in preclinical models.
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Affiliation(s)
- Xing Wang
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Chen Zhang
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Ryma Madji
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Camille Voros
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Serge Mazères
- Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Christian Bijani
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Céline Deraeve
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
| | - Olivier Cuvillier
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Correspondence: (O.C.); (H.G.); (M.-L.M.); (C.H.)
| | - Heinz Gornitzka
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Correspondence: (O.C.); (H.G.); (M.-L.M.); (C.H.)
| | - Marie-Lise Maddelein
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Correspondence: (O.C.); (H.G.); (M.-L.M.); (C.H.)
| | - Catherine Hemmert
- Coordination Chemistry Laboratory of the National Centre for Scientific Research (LCC-CNRS), University of Toulouse, CNRS, Université Toulouse III–Paul Sabatier (UPS), 31077 Toulouse, France
- Correspondence: (O.C.); (H.G.); (M.-L.M.); (C.H.)
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147
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Yennawar HP, Lowe SL, Mammen MM, Verhagen CR, Silverberg LJ. Crystal structures of rac-2,3-diphenyl-2,3,5,6-tetra-hydro-4 H-1,3-thia-zine-1,1,4-trione and N-[(2 S,5 R)-1,1,4-trioxo-2,3-diphenyl-1,3-thia-zinan-5-yl]acet-amide. Acta Crystallogr E Crystallogr Commun 2023; 79:120-123. [PMID: 36793410 PMCID: PMC9912464 DOI: 10.1107/s2056989023000695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 01/25/2023] [Indexed: 02/01/2023]
Abstract
The syntheses and crystal structures of two thia-zinone compounds, namely, rac-2,3-diphenyl-2,3,5,6-tetra-hydro-4H-1,3-thia-zine-1,1,4-trione, C16H15NO3S, in its racemic form, and N-[(2S,5R)-1,1,4-trioxo-2,3-diphenyl-1,3-thia-zinan-5-yl]acet-amide, C18H18N2O4S, in an enanti-opure form, are reported. The thia-zine rings in the two structures differ in their puckering, as a half-chair in the first and a boat pucker in the second. The extended structures for both compounds have only C-H⋯O-type inter-actions between symmetry-related mol-ecules, and exhibit no π-π stacking inter-actions in spite of each having two phenyl rings.
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Affiliation(s)
- Hemant P. Yennawar
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Saige L. Lowe
- Pennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
| | - Matthew M. Mammen
- Pennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
| | - Connor R. Verhagen
- Pennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
| | - Lee J. Silverberg
- Pennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
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148
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Jiajaroen S, Diaz-Torres R, Laksee S, Chainok K. Crystal structure of a new europium(III) compound based on thio-phene-acrylic acid. Acta Crystallogr E Crystallogr Commun 2023; 79:38-43. [PMID: 36628366 PMCID: PMC9815134 DOI: 10.1107/s2056989022011884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022]
Abstract
A europium(III) coordination compound based on thio-phene-acrylic acid (Htpa), tri-aqua-tris-[3-(thio-phen-2-yl)prop-2-enoato-κ2 O,O']europium(III)-3-(thio-phen-2-yl)prop-2-enoic acid (1/3), [Eu(C7H5O2S)3(H2O)3]·3C7H6O2S or [Eu(tpa)3(H2O)3]·3(Htpa) (1), where tpa is the conjugate base of Htpa, has been synthesized and structurally characterized. Compound 1 crystallizes in the trigonal space group R3. The structure of 1 consists of a discrete mol-ecular complex [Eu(tpa)3(H2O)3] species and the Htpa mol-ecule. In the crystal, the two components are involved in O-H⋯O [ring motif R 2 2(8)] and C-H⋯π hydrogen-bonding inter-actions. These inter-actions were further investigated by Hirshfeld surface analysis, which showed high contributions of H⋯H, H⋯C/C⋯H and H⋯O/O⋯H contacts to the total Hirshfeld surfaces.
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Affiliation(s)
- Suwadee Jiajaroen
- Thammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand
| | - Raul Diaz-Torres
- Thammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand
| | - Sakchai Laksee
- Nuclear Technology Research and Development Center, Thailand Institute of Nuclear Technology (Public Organization), Nakhon Nayok 26120, Thailand
| | - Kittipong Chainok
- Thammasat University Research Unit in Multifunctional Crystalline Materials and Applications (TU-MCMA), Faculty of Science and Technology, Thammasat University, Pathum Thani 12121, Thailand
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149
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Deng R, Zou J, Zhao CL, Yang YM, Ku CF, Zhu Y, Liang ZM, Ye JH, Pan LT, Zhang HJ. Bioactive icetexane and abietane diterpenes from Isodon phyllopodus. Nat Prod Res 2023; 37:68-76. [PMID: 34498960 DOI: 10.1080/14786419.2021.1950716] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
A new icetexane diterpenoid, 11, 12, 20α-trihydroxyl-7β-methoxyicetexa-8, 11, 13-triene-19, 10-lactone [Phyllane A (1)], and a new abietane diterpenoid, 7β, 20-epoxy-3β, 17-acetoxy-abieta-8, 11, 13-teriene-11, 12-diol [phyllane B (2)], along with two known compounds (3 and 4) were isolated from the methanol (MeOH) extract of twigs and leaves of the folk medicinal Isodon phyllopodus. Their structures were determined by spectroscopic analyses including 2 D NMR spectral data, and further confirmed by X-ray single crystal diffraction. Moreover, the compounds were evaluated for their cytotoxicity and anti-HIV activities, and phyllane A showed anti-HIV activity with an IC50 value of 15.7 μM, but phyllane B was found to be cytotoxic to the A549 host cells with a CC50 value of 108.5 μM.
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Affiliation(s)
- Rui Deng
- Guizhou University of Traditional Chinese Medicine, Guiyang, P. R. China
| | - Juan Zou
- Guizhou University of Traditional Chinese Medicine, Guiyang, P. R. China
| | - Chen-Liang Zhao
- Guizhou University of Traditional Chinese Medicine, Guiyang, P. R. China.,School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
| | - Ye-Meng Yang
- School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
| | - Chuen Fai Ku
- School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
| | - Yu Zhu
- School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
| | - Zheng-Ming Liang
- School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
| | - Jiang-Hai Ye
- Guizhou University of Traditional Chinese Medicine, Guiyang, P. R. China
| | - Lu-Tai Pan
- Guizhou University of Traditional Chinese Medicine, Guiyang, P. R. China
| | - Hong-Jie Zhang
- School of Chinese Medicine, Hong Kong Baptist University, Kowloon, Hong Kong
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150
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Motaln K, Cotman AE, Lozinšek M. ( S)-2-[( S)-2,2,2-Tri-fluoro-1-hy-droxy-eth-yl]-1-tetra-lone. IUCRDATA 2023; 8:x221209. [PMID: 36794051 PMCID: PMC9912318 DOI: 10.1107/s2414314622012093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 12/22/2022] [Indexed: 01/09/2023] Open
Abstract
The crystal structure of the title compound, C12H11F3O2, was elucidated by low-temperature single-crystal X-ray diffraction. The enanti-opure compound crystallizes in the Sohncke space group P21 and features one mol-ecule in the asymmetric unit. The structure displays inter-molecular O-H⋯O hydrogen bonding, which links the mol-ecules into infinite chains propagating parallel to [010]. The absolute configuration was established from anomalous dispersion.
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Affiliation(s)
- Klemen Motaln
- Department of Inorganic Chemistry and Technology, Jožef Stefan Institute, Jamova cesta 39, 1000 Ljubljana, Slovenia
- Jožef Stefan International Postgraduate School, Jamova cesta 39, 1000 Ljubljana, Slovenia
| | - Andrej Emanuel Cotman
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Ljubljana, Aškerčeva cesta 7, 1000 Ljubljana, Slovenia
| | - Matic Lozinšek
- Department of Inorganic Chemistry and Technology, Jožef Stefan Institute, Jamova cesta 39, 1000 Ljubljana, Slovenia
- Jožef Stefan International Postgraduate School, Jamova cesta 39, 1000 Ljubljana, Slovenia
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