101
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Brito JC, Del Barrio G, Stellmes M, Pleguezuelos JM, Saarinen J. Drivers of change and conservation needs for vertebrates in drylands: an assessment from global scale to Sahara-Sahel wetlands. THE EUROPEAN ZOOLOGICAL JOURNAL 2021. [DOI: 10.1080/24750263.2021.1991496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- J. C. Brito
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da, Universidade do Porto, Portugal
- Departamento de Biologia da Faculdade de Ciências da, Universidade do Porto, Portugal
| | - G. Del Barrio
- Estación Experimental de Zonas Áridas (CSIC), Ctra. Sacramento sn, La Cañada, Spain
| | - M. Stellmes
- Institute of Geographical Sciences, Remote Sensing and Geoinformatics, Freie Universität Berlin, Germany
| | - J. M. Pleguezuelos
- Departamento de Zoología, Facultad de Ciencias, Universidad de Granada, Spain
| | - J. Saarinen
- Geography Research Unit, University of Oulu, Finland
- School of Tourism and Hospitality, University of Johannesburg, South Africa
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102
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Alberdi A, Martin Bideguren G, Aizpurua O. Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis. Sci Rep 2021; 11:22660. [PMID: 34811423 PMCID: PMC8608908 DOI: 10.1038/s41598-021-02015-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Accepted: 11/02/2021] [Indexed: 11/09/2022] Open
Abstract
The gut microbiota is recognised as an essential asset for the normal functioning of animal biology. When wild animals are moved into captivity, the modified environmental pressures are expected to rewire the gut microbiota, yet whether this transition follows similar patterns across vertebrates is still unresolved due to the absence of systematic multi-species analyses. We performed a meta-analysis of gut microbiota profiles of 322 captive and 322 wild specimens from 24 vertebrate species. Our analyses yielded no overall pattern of diversity and compositional variation between wild and captive vertebrates, but a heterogeneous landscape of responses, which differed depending on the components of diversity considered. Captive populations showed enrichment patterns of human-associated microorganisms, and the minimal host phylogenetic signal suggests that changes between wild and captive populations are mainly driven by case-specific captivity conditions. Finally, we show that microbiota differences between wild and captive populations can impact evolutionary and ecological inferences that rely on hierarchical clustering-based comparative analyses of gut microbial communities across species.
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Affiliation(s)
- Antton Alberdi
- Center for Evolutionary Hologenomics, GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark.
| | - Garazi Martin Bideguren
- Center for Evolutionary Hologenomics, GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark
| | - Ostaizka Aizpurua
- Center for Evolutionary Hologenomics, GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark.
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103
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Chakravarty R, Mohan R, Voigt CC, Krishnan A, Radchuk V. Functional diversity of Himalayan bat communities declines at high elevation without the loss of phylogenetic diversity. Sci Rep 2021; 11:22556. [PMID: 34799607 PMCID: PMC8604957 DOI: 10.1038/s41598-021-01939-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 11/08/2021] [Indexed: 11/09/2022] Open
Abstract
Species richness exhibits well-known patterns across elevational gradients in various taxa, but represents only one aspect of quantifying biodiversity patterns. Functional and phylogenetic diversity have received much less attention, particularly for vertebrate taxa. There is still a limited understanding of how functional, phylogenetic and taxonomic diversity change in concert across large gradients of elevation. Here, we focused on the Himalaya-representing the largest elevational gradients in the world-to investigate the patterns of taxonomic, functional and phylogenetic diversity in a bat assemblage. Combining field data on species occurrence, relative abundance, and functional traits with measures of phylogenetic diversity, we found that bat species richness and functional diversity declined at high elevation but phylogenetic diversity remained unchanged. At the lowest elevation, we observed low functional dispersion despite high species and functional richness, suggesting a niche packing mechanism. The decline in functional richness, dispersion, and divergence at the highest elevation is consistent with patterns observed due to environmental filtering. These patterns are driven by the absence of rhinolophid bats, four congeners with extreme trait values. Our data, some of the first on mammals from the Himalayan region, suggest that in bat assemblages with relatively high species diversity, phylogenetic diversity may not be a substitute to measure functional diversity.
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Affiliation(s)
- Rohit Chakravarty
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke Str. 17, 10315, Berlin, Germany.
- Department of Animal Behaviour, Institute of Biology, Freie Universität Berlin, Berlin, Germany.
| | - Ram Mohan
- Department of Biology, Indian Institute of Science Education and Research (IISER) Pune, Pashan Road, Pune, 411008, India
| | - Christian C Voigt
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke Str. 17, 10315, Berlin, Germany
- Department of Animal Behaviour, Institute of Biology, Freie Universität Berlin, Berlin, Germany
| | - Anand Krishnan
- Department of Biology, Indian Institute of Science Education and Research (IISER) Pune, Pashan Road, Pune, 411008, India
- Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Bhauri, 462066, India
| | - Viktoriia Radchuk
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke Str. 17, 10315, Berlin, Germany
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104
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Chaves R, Ferrandis P, Escudero A, Luzuriaga AL. Diverse phylogenetic neighborhoods enhance community resistance to drought in experimental assemblages. Sci Rep 2021; 11:22499. [PMID: 34795359 PMCID: PMC8602379 DOI: 10.1038/s41598-021-01991-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 11/09/2021] [Indexed: 11/30/2022] Open
Abstract
Although the role played by phylogeny in the assembly of plant communities remains as a priority to complete the theory of species coexistence, experimental evidence is lacking. It is still unclear to what extent phylogenetic diversity is a driver or a consequence of species assembly processes. We experimentally explored how phylogenetic diversity can drive the community level responses to drought conditions in annual plant communities. We manipulated the initial phylogenetic diversity of the assemblages and the water availability in a common garden experiment with two irrigation treatments: average natural rainfall and drought, formed with annual plant species of gypsum ecosystems of Central Spain. We recorded plant survival and the numbers of flowering and fruiting plants per species in each assemblage. GLMMs were performed for the proportion of surviving, flowering, fruiting plants per species and for total proportion of surviving species and plants per pot. In water limited conditions, high phylogenetic diversity favored species coexistence over time with higher plant survival and more flowering and fruiting plants per species and more species and plants surviving per pot. Our results agree with the existence of niche complementarity and the convergence of water economy strategies as major mechanisms for promoting species coexistence in plant assemblages in semiarid Mediterranean habitats. Our findings point to high phylogenetic diversity among neighboring plants as a plausible feature underpinning the coexistence of species, because the success of each species in terms of surviving and producing offspring in drought conditions was greater when the initial phylogenetic diversity was higher. Our study is a step forward to understand how phylogenetic relatedness is connected to the mechanisms determining the maintenance of biodiversity.
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Affiliation(s)
- Rocío Chaves
- Department of Biology and Geology, Rey Juan Carlos University, C/Tulipán s/n, 28933, Móstoles, Madrid, Spain
| | - Pablo Ferrandis
- Botanic Institute of the University of Castilla-La Mancha, Castilla-La Mancha Botanic Garden, Avda. de La Mancha s/n, 02006, Albacete, Spain
| | - Adrián Escudero
- Department of Biology and Geology, Rey Juan Carlos University, C/Tulipán s/n, 28933, Móstoles, Madrid, Spain
| | - Arantzazu L Luzuriaga
- Department of Biology and Geology, Rey Juan Carlos University, C/Tulipán s/n, 28933, Móstoles, Madrid, Spain.
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105
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Morelli F, Benedetti Y, Ibáñez-Álamo JD, Tryjanowski P, Jokimäki J, Kaisanlahti-Jokimäki ML, Suhonen J, Díaz M, Møller AP, Moravec D, Prosek J, Bussière R, Mägi M, Kominos T, Galanaki A, Bukas N, Marko G, Pruscini F, Tonelli M, Jerzak L, Ciebiera O, Reif J. Effects of urbanization on taxonomic, functional and phylogenetic avian diversity in Europe. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 795:148874. [PMID: 34246142 DOI: 10.1016/j.scitotenv.2021.148874] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 07/01/2021] [Accepted: 07/02/2021] [Indexed: 06/13/2023]
Abstract
Europe is an urbanized continent characterized by a long history of human-wildlife interactions. This study aimed to assess the effects of specific elements of urbanization and urban pollution on complementary avian diversity metrics, to provide new insights on the conservation of urban birds. Our study recorded 133 bird species at 1624 point counts uniformly distributed in seventeen different European cities. Our results thus covered a large spatial scale, confirming both effects of geographical and local attributes of the cities on avian diversity. However, we found contrasting effects for the different diversity components analyzed. Overall, taxonomic diversity (bird species richness), phylogenetic diversity and relatedness were significantly and negatively associated with latitude, while functional dispersion of communities showed no association whatsoever. At the local level (within the city), we found that urban greenery (grass, bush, and trees) is positively correlated with the number of breeding bird species, while the building cover showed a detrimental effect. Functional dispersion was the less affected diversity metric, while grass and trees and water (rivers or urban streams) positively affected the phylogenetic diversity of avian communities. Finally, the phylogenetic relatedness of species increased with all the main indicators of urbanization (building surface, floors, pedestrian's density and level of light pollution) and was only mitigated by the presence of bushes. We argue that maintaining adequate levels of avian diversity within the urban settlements can help to increase the potential resilience of urban ecosystems exposed to the stress provoked by rapid and continuous changes. We listed some characteristics of the cities providing positive and negative effects on each facet of urban avian diversity.
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Affiliation(s)
- Federico Morelli
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Kamýcká 129, CZ-165 00 Prague 6, Czech Republic.
| | - Yanina Benedetti
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Kamýcká 129, CZ-165 00 Prague 6, Czech Republic
| | | | - Piotr Tryjanowski
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Kamýcká 129, CZ-165 00 Prague 6, Czech Republic; Institute of Zoology, Poznań University of Life Sciences, Wojska Polskiego 71C, PL-60-625 Poznań, Poland
| | - Jukka Jokimäki
- Nature Inventory and EIA-services, Arctic Centre, University of Lapland, P. O. Box 122, FI-96101 Rovaniemi, Finland
| | | | - Jukka Suhonen
- Department of Biology, University of Turku, Turku, Finland
| | - Mario Díaz
- Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales (BGC-MNCN-CSIC), E-28006 Madrid, Spain
| | - Anders Pape Møller
- Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, F-91405 Orsay Cedex, France
| | - David Moravec
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Department of Applied Geoinformatics and Spatial Planning, Kamýcká 129, CZ-165 00 Prague 6, Czech Republic
| | - Jiri Prosek
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Department of Applied Geoinformatics and Spatial Planning, Kamýcká 129, CZ-165 00 Prague 6, Czech Republic
| | | | - Marko Mägi
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Theodoros Kominos
- Department of Zoology, School of Biology, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Antonia Galanaki
- Department of Zoology, School of Biology, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Nikos Bukas
- Plegadis, Riga Feraiou 6A, 45444 Ioannina, Greece
| | - Gabor Marko
- Department of Plant Pathology, Szent István University, Budapest, Hungary; Behavioural Ecology Group, Department of Systematic Zoology and Ecology, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/C, H-1117 Budapest, Hungary
| | - Fabio Pruscini
- S. C. della Pantiera 23, 61029 Pantiera, Urbino (PU), Italy
| | - Mattia Tonelli
- Department of Biomolecular Sciences (DISB), University of Urbino "Carlo Bo", 61029 Urbino, PU, Italy
| | - Leszek Jerzak
- Institute of Biological Sciences, University of Zielona Góra, Prof. Szafrana St. 1, PL 65-16 Zielona Góra, Poland
| | - Olaf Ciebiera
- Institute of Biological Sciences, University of Zielona Góra, Prof. Szafrana St. 1, PL 65-16 Zielona Góra, Poland
| | - Jiri Reif
- Institute for Environmental Studies, Faculty of Science, Charles University in Prague, Czech Republic; Department of Zoology and Laboratory of Ornithology, Faculty of Science, Palacky University in Olomouc, Czech Republic
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106
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Strutzenberger P, Fiedler K. Central and Northern European caterpillar assemblages show strong phylogenetic structure. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13956] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
| | - Konrad Fiedler
- Department of Botany and Biodiversity Research University of Vienna Vienna Austria
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107
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Iannella M, Fiasca B, Di Lorenzo T, Di Cicco M, Biondi M, Mammola S, Galassi DM. Getting the ‘most out of the hotspot’ for practical conservation of groundwater biodiversity. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01844] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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108
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Milliken W, Walker BE, Howes MJR, Forest F, Nic Lughadha E. Plants used traditionally as antimalarials in Latin America: Mining the tree of life for potential new medicines. JOURNAL OF ETHNOPHARMACOLOGY 2021; 279:114221. [PMID: 34029639 DOI: 10.1016/j.jep.2021.114221] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 05/11/2021] [Accepted: 05/17/2021] [Indexed: 06/12/2023]
Abstract
ETHNOPHARMACOLOGICAL RELEVANCE Malaria remains a serious and challenging disease. Traditional antimalarial medicines are largely based on plants, and ethnopharmacological research has inspired the development of antimalarial pharmaceuticals such as artemisinin. Antimalarial drug resistance is an increasing problem in Plasmodium species, and new therapeutic strategies to combat malaria are needed. Although the number of malaria cases has been decreasing in Latin America, malaria remains a significant threat in many regions. Local people in Latin America have been using numerous plant species to treat malaria, some of which have been scientifically studied, but many others have not. AIM OF THE STUDY Our principal objective is to harness ethnobotanical data on species used traditionally to treat malaria, combined with phylogenetic approaches, to understand how ethnobotany could help identify plant genera as potential sources of new medicines. MATERIALS AND METHODS Plants used to treat malaria in Latin America were compiled from published and grey literature, unpublished data, and herbarium specimens. Initial assessment of potentially important species/genera/families included compiling the number of species used within the genus, the number of use reports per genus and species, and the geographic distribution of their use. The analysis of taxonomic distribution of species reported as antimalarial in Latin America (excluding the Southern Cone) was conducted, to determine which genera and families with reputed antimalarial properties are over-represented, and phylogenetic analyses were performed to identify if there was evidence for antimalarial species being dispersed/clustered throughout the tree or at its tips. This approach enabled 'hot-nodes' in certain families to be identified, to predict new genera with potential antimalarial properties. RESULTS Over 1000 plant species have been used to treat malaria in Latin America, of which over 600 species were cited only once. The genera with the highest number of antimalarial species were Aspidosperma, Solanum, Piper, Croton and Aristolochia. In terms of geographic distribution, the most widely used genera were Aspidosperma, Momordica, Cinchona, Senna and Stachytarpheta. Significant phylogenetic signal was detected in the distribution of native species used for malaria, analysed in a genus-level phylogenetic framework. The eudicot and magnoliidae lineages were over-represented, while monocots were not. CONCLUSION Analysis of ethnobotanical use reports in a phylogenetic framework reveals the existence of hot nodes for malaria across the Latin American flora. We demonstrate how species and genera currently lacking such reports could be pinpointed as of potential interest based on their evolutionary history. Extending this approach to other regions of the world and other diseases could accelerate the discovery of novel medicines and enhance healthcare in areas where new therapeutic strategies are needed.
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Affiliation(s)
| | | | - Melanie-Jayne R Howes
- Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK; Institute of Pharmaceutical Science, Faculty of Life Sciences and Medicine, King's College London, SE1 9NH, UK.
| | - Félix Forest
- Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK.
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109
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Moreno RA, Labra FA, Cotoras DD, Camus PA, Gutiérrez D, Aguirre L, Rozbaczylo N, Poulin E, Lagos NA, Zamorano D, Rivadeneira MM. Evolutionary drivers of the hump-shaped latitudinal gradient of benthic polychaete species richness along the Southeastern Pacific coast. PeerJ 2021; 9:e12010. [PMID: 34692242 PMCID: PMC8483006 DOI: 10.7717/peerj.12010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 07/28/2021] [Indexed: 11/20/2022] Open
Abstract
Latitudinal diversity gradients (LDG) and their explanatory factors are among the most challenging topics in macroecology and biogeography. Despite of its apparent generality, a growing body of evidence shows that 'anomalous' LDG (i.e., inverse or hump-shaped trends) are common among marine organisms along the Southeastern Pacific (SEP) coast. Here, we evaluate the shape of the LDG of marine benthic polychaetes and its underlying causes using a dataset of 643 species inhabiting the continental shelf (<200 m depth), using latitudinal bands with a spatial resolution of 0.5°, along the SEP (3-56° S). The explanatory value of six oceanographic (Sea Surface Temperature (SST), SST range, salinity, salinity range, primary productivity and shelf area), and one macroecological proxy (median latitudinal range of species) were assessed using a random forest model. The taxonomic structure was used to estimate the degree of niche conservatism of predictor variables and to estimate latitudinal trends in phylogenetic diversity, based on three indices (phylogenetic richness (PDSES), mean pairwise distance (MPDSES), and variation of pairwise distances (VPD)). The LDG exhibits a hump-shaped trend, with a maximum peak of species richness at ca. 42° S, declining towards northern and southern areas of SEP. The latitudinal pattern was also evident in local samples controlled by sampling effort. The random forest model had a high accuracy (pseudo-r2 = 0.95) and showed that the LDG could be explained by four variables (median latitudinal range, SST, salinity, and SST range), yet the functional relationship between species richness and these predictors was variable. A significant degree of phylogenetic conservatism was detected for the median latitudinal range and SST. PDSES increased toward the southern region, whereas VPD showed the opposite trend, both statistically significant. MPDSES has the same trend as PDSES, but it is not significant. Our results reinforce the idea that the south Chile fjord area, particularly the Chiloé region, was likely the evolutionary source of new species of marine polychaetes along SEP, creating a hotspot of diversity. Therefore, in the same way as the canonical LDG shows a decline in diversity while moving away from the tropics; on this case the decline occurs while moving away from Chiloé Island. These results, coupled with a strong phylogenetic signal of the main predictor variables suggest that processes operating mainly at evolutionary timescales govern the LDG.
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Affiliation(s)
- Rodrigo A Moreno
- Facultad de Ciencias, Universidad Santo Tomás, Santiago, Chile.,Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad Santo Tomás, Santiago, Chile
| | - Fabio A Labra
- Facultad de Ciencias, Universidad Santo Tomás, Santiago, Chile.,Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad Santo Tomás, Santiago, Chile
| | - Darko D Cotoras
- Entomology Department, California Academy of Sciences, San Francisco, California, United States
| | - Patricio A Camus
- Departamento de Ecología, Facultad de Ciencias, Universidad Católica de la Santísima Concepción, Concepción, Chile.,Centro de Investigación en Biodiversidad y Ambientes Sustentables (CIBAS), Universidad Católica de la Santísima Concepción, Concepción, Chile
| | - Dimitri Gutiérrez
- Dirección de Investigaciones Oceanográficas y de Cambio Climático, Instituto del Mar del Perú (IMARPE), Callao, Perú
| | - Luis Aguirre
- Laboratorio de Biología y Sistemática de Invertebrados Marinos (LaBSIM), Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Lima, Perú
| | - Nicolás Rozbaczylo
- FAUNAMAR Ltda. Consultorías Medio Ambientales e Investigación Marina, Santiago, Chile
| | - Elie Poulin
- Instituto Milenio de Ecología y Biodiversidad (IEB), Facultad de Ciencias, Universidad de Chile, Santiago, Chile
| | - Nelson A Lagos
- Facultad de Ciencias, Universidad Santo Tomás, Santiago, Chile.,Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad Santo Tomás, Santiago, Chile
| | - Daniel Zamorano
- Centro de Investigación e Innovación para el Cambio Climático (CiiCC), Universidad Santo Tomás, Santiago, Chile.,Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Marcelo M Rivadeneira
- Laboratorio de Paleobiología, Centro de Estudios Avanzados en Zonas Aridas (CEAZA), Coquimbo, Chile.,Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Coquimbo, Chile.,Departamento de Biología, Universidad de La Serena, La Serena, Chile
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110
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Qiao X, Zhang N, Zhang C, Zhang Z, Zhao X, Gadow K. Unravelling biodiversity–productivity relationships across a large temperate forest region. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13922] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xuetao Qiao
- Research Center of Forest Management Engineering of State Forestry and Grassland Administration Beijing Forestry University Beijing China
| | - Naili Zhang
- Research Center of Forest Management Engineering of State Forestry and Grassland Administration Beijing Forestry University Beijing China
| | - Chunyu Zhang
- Research Center of Forest Management Engineering of State Forestry and Grassland Administration Beijing Forestry University Beijing China
| | - Zhonghui Zhang
- Jilin Provincial Academy of Forestry Sciences Changchun China
| | - Xiuhai Zhao
- Research Center of Forest Management Engineering of State Forestry and Grassland Administration Beijing Forestry University Beijing China
| | - Klaus Gadow
- Faculty of Forestry and Forest Ecology Georg‐August‐University Göttingen Göttingen Germany
- Department of Forest and Wood Science University of Stellenbosch Stellenbosch South Africa
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111
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Abstract
As prehistoric cave paintings illustrate, our species has had an enduring appreciation of the variety and abundance of life on Earth. Today, however, concern is focused on the pressure humanity is placing on the natural world, and on the continued ability of ecosystems to deliver the services on which we all depend. To understand the extent of this 'biodiversity crisis' and develop strategies to ameliorate its impact, it is essential to be able to accurately measure biological diversity (a term often contracted to biodiversity) and make informed predictions about how and why this diversity varies over space and time.
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112
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Titcomb GC, Amooni G, Mantas JN, Young HS. The effects of herbivore aggregations at water sources on savanna plants differ across soil and climate gradients. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2021; 31:e02422. [PMID: 34288228 DOI: 10.1002/eap.2422] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 01/29/2021] [Accepted: 03/22/2021] [Indexed: 06/13/2023]
Abstract
Water sources in arid and semiarid ecosystems support humans, wildlife, and domestic animals, forming nodes of activity that sculpt surrounding plant communities and impact critical grazing and soil systems. However, global aridification and changing surface water supply threaten to disrupt these water resources, with strong implications for conservation and management of these ecosystems. To understand how effects of herbivore aggregation at water impact plant communities across contexts, we measured herbivore activity, plant height, cover (trees, grasses, forbs, and bare ground), diversity, and composition at 17 paired water sources and matrix sites across a range of abiotic factors in a semiarid savanna in Kenya. The effects of proximity to surface water and herbivore aggregation on plant communities varied substantially depending on soil and rainfall. In arid areas with nutrient-poor sandy soils, forb and tree cover were 50% lower at water sources compared to neighboring matrix sites, bare ground was 20% higher, species richness was 15% lower, and a single globally important grazing grass (Cynodon dactylon) dominated 60% of transects. However, in mesic areas with nutrient-rich finely textured soils, species richness was 25% higher, despite a 40% increase in bare ground, concurrent with the decline of a dominant tall grass (Themeda triandra) and increase in C. dactylon and other grass species near water sources. Recent rainfall was important for grasses; cover was higher relative to matrix sites only during wet periods, a potential indication of compensatory grazing. These findings suggest that effects of herbivore aggregation on vegetation diversity and composition will vary in magnitude, and in some cases direction, depending on other factors at the site. Where moisture and nutrient resources are high and promote the dominance of few plant species, herbivore aggregations may maintain diversity by promoting grazing lawns and increasing nondominant species cover. However, in arid conditions and sites with low nutrient availability, diversity can be substantially reduced by these aggregations. Our results highlight the importance of considering abiotic conditions when managing for effects of herbivore aggregations near water. This will be particularly important for future managers in light of growing global aridification and surface water changes.
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Affiliation(s)
- Georgia C Titcomb
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa Barbara, California, 93106, USA
- Mpala Research Centre, Box 555, Nanyuki, 10400, Kenya
| | | | | | - Hillary S Young
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa Barbara, California, 93106, USA
- Mpala Research Centre, Box 555, Nanyuki, 10400, Kenya
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113
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Avian ecology and community structure across elevation gradients: The importance of high latitude temperate mountain habitats for conserving biodiversity in the Americas. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01799] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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114
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Cao JH, Qi R, Liu T, Li B, Gao BQ, Chen XL, Zhao Y, Zhao ZG. Patterns of species and phylogenetic diversity in Picea purpurea forests under different levels of disturbance on the northeastern Qinghai-Tibetan Plateau. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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115
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Zhu ZX, Nizamani MM, Harris AJ, Wang HF. Anthropogenic factors are stronger drivers of patterns of endemic plant diversity on Hainan Island of China than natural environmental factors. PLoS One 2021; 16:e0257575. [PMID: 34587202 PMCID: PMC8480898 DOI: 10.1371/journal.pone.0257575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 09/06/2021] [Indexed: 11/19/2022] Open
Abstract
The roles of natural and anthropogenic factors in contributing to the organization of biodiversity at large and small scales have long been challenging to disentangle, and doing so has never been attempted for the island province of Hainan in China based on patterns of taxonomic and phylogenetic diversity. Therefore, in this study, we evaluated the taxonomic and phylogenetic diversity of endemic plants on the island as a function of anthropogenic and natural variables based on non-metric multi-dimensional scaling (NMDS) ordination and generated generalized linear models (GLMs). We found that the highest phylogenetic diversity (1006) and the lowest mean phylogenetic distance (515.5) was in the provincial capital, Haikou. The NMDS analyses indicated that taxonomic diversity was significantly correlated with industrial revenue (p = 0.006) and population (p = 0.004). Furthermore, most phylogenetic diversity indices were strongly correlated with population and agricultural revenue, while the sampled natural environmental variables were not significantly correlated with plant diversity indices. These findings indicate that anthropogenic factors are the main present-day driving forces of plant diversity in Hainan, though we did detect a significant latitudinal diversity gradient of richness that likely reflects the historical roles of natural environmental factors in the organization of biodiversity on the island. Overall, our results are alarming for biodiversity of the island and indicate that conservation and sustainable use of endemic plant species must be made a critical priority.
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Affiliation(s)
- Zhi-Xin Zhu
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, China
| | - Mir Muhammad Nizamani
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, China
| | - A. J. Harris
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Science, Guangzhou, China
| | - Hua-Feng Wang
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, China
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116
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Adamo I, Castaño C, Bonet JA, Colinas C, Martínez de Aragón J, Alday JG. Lack of Phylogenetic Differences in Ectomycorrhizal Fungi among Distinct Mediterranean Pine Forest Habitats. J Fungi (Basel) 2021; 7:jof7100793. [PMID: 34682215 PMCID: PMC8538088 DOI: 10.3390/jof7100793] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/14/2021] [Accepted: 09/17/2021] [Indexed: 01/22/2023] Open
Abstract
Understanding whether the occurrences of ectomycorrhizal species in a given tree host are phylogenetically determined can help in assessing different conservational needs for each fungal species. In this study, we characterized ectomycorrhizal phylogenetic composition and phylogenetic structure in 42 plots with five different Mediterranean pine forests: i.e., pure forests dominated by P. nigra, P. halepensis, and P. sylvestris, and mixed forests of P. nigra-P. halepensis and P. nigra-P. sylvestris, and tested whether the phylogenetic structure of ectomycorrhizal communities differs among these. We found that ectomycorrhizal communities were not different among pine tree hosts neither in phylogenetic composition nor in structure and phylogenetic diversity. Moreover, we detected a weak abiotic filtering effect (4%), with pH being the only significant variable influencing the phylogenetic ectomycorrhizal community, while the phylogenetic structure was slightly influenced by the shared effect of stand structure, soil, and geographic distance. However, the phylogenetic community similarity increased at lower pH values, supporting that fewer, closely related species were found at lower pH values. Also, no phylogenetic signal was detected among exploration types, although short and contact were the most abundant types in these forest ecosystems. Our results demonstrate that pH but not tree host, acts as a strong abiotic filter on ectomycorrhizal phylogenetic communities in Mediterranean pine forests at a local scale. Finally, our study shed light on dominant ectomycorrhizal foraging strategies in drought-prone ecosystems such as Mediterranean forests.
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Affiliation(s)
- Irene Adamo
- Joint Research Unit CTFC-AGROTECNIO-CERCA, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain; (J.A.B.); (J.M.d.A.); (J.G.A.)
- Department of Crop and Forest Sciences, University of Lleida, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain;
- Correspondence:
| | - Carles Castaño
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75007 Uppsala, Sweden;
| | - José Antonio Bonet
- Joint Research Unit CTFC-AGROTECNIO-CERCA, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain; (J.A.B.); (J.M.d.A.); (J.G.A.)
- Department of Crop and Forest Sciences, University of Lleida, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain;
| | - Carlos Colinas
- Department of Crop and Forest Sciences, University of Lleida, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain;
- Forest Science and Technology Centre of Catalonia, Ctra. Sant Llorenç de Morunys km 2, E25280 Solsona, Spain
| | - Juan Martínez de Aragón
- Joint Research Unit CTFC-AGROTECNIO-CERCA, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain; (J.A.B.); (J.M.d.A.); (J.G.A.)
- Forest Science and Technology Centre of Catalonia, Ctra. Sant Llorenç de Morunys km 2, E25280 Solsona, Spain
| | - Josu G. Alday
- Joint Research Unit CTFC-AGROTECNIO-CERCA, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain; (J.A.B.); (J.M.d.A.); (J.G.A.)
- Department of Crop and Forest Sciences, University of Lleida, Av. Alcalde Rovira Roure 191, E25198 Lleida, Spain;
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Humphreys JM, Pelzel-McCluskey AM, Cohnstaedt LW, McGregor BL, Hanley KA, Hudson AR, Young KI, Peck D, Rodriguez LL, Peters DPC. Integrating Spatiotemporal Epidemiology, Eco-Phylogenetics, and Distributional Ecology to Assess West Nile Disease Risk in Horses. Viruses 2021; 13:v13091811. [PMID: 34578392 PMCID: PMC8473291 DOI: 10.3390/v13091811] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 09/08/2021] [Accepted: 09/09/2021] [Indexed: 12/13/2022] Open
Abstract
Mosquito-borne West Nile virus (WNV) is the causative agent of West Nile disease in humans, horses, and some bird species. Since the initial introduction of WNV to the United States (US), approximately 30,000 horses have been impacted by West Nile neurologic disease and hundreds of additional horses are infected each year. Research describing the drivers of West Nile disease in horses is greatly needed to better anticipate the spatial and temporal extent of disease risk, improve disease surveillance, and alleviate future economic impacts to the equine industry and private horse owners. To help meet this need, we integrated techniques from spatiotemporal epidemiology, eco-phylogenetics, and distributional ecology to assess West Nile disease risk in horses throughout the contiguous US. Our integrated approach considered horse abundance and virus exposure, vector and host distributions, and a variety of extrinsic climatic, socio-economic, and environmental risk factors. Birds are WNV reservoir hosts, and therefore we quantified avian host community dynamics across the continental US to show intra-annual variability in host phylogenetic structure and demonstrate host phylodiversity as a mechanism for virus amplification in time and virus dilution in space. We identified drought as a potential amplifier of virus transmission and demonstrated the importance of accounting for spatial non-stationarity when quantifying interaction between disease risk and meteorological influences such as temperature and precipitation. Our results delineated the timing and location of several areas at high risk of West Nile disease and can be used to prioritize vaccination programs and optimize virus surveillance and monitoring.
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Affiliation(s)
- John M. Humphreys
- Pest Management Research Unit, Agricultural Research Service, US Department of Agriculture, Sidney, MT 59270, USA
- Correspondence:
| | - Angela M. Pelzel-McCluskey
- Veterinary Services, Animal and Plant Health Inspection Service (APHIS), US Department of Agriculture, Fort Collins, CO 80526, USA;
| | - Lee W. Cohnstaedt
- Arthropod-Borne Animal Disease Research Unit, Agricultural Research Service, US Department of Agriculture, Manhattan, KS 66502, USA; (L.W.C.); (B.L.M.)
| | - Bethany L. McGregor
- Arthropod-Borne Animal Disease Research Unit, Agricultural Research Service, US Department of Agriculture, Manhattan, KS 66502, USA; (L.W.C.); (B.L.M.)
| | - Kathryn A. Hanley
- Department of Biology, New Mexico State University, Las Cruces, NM 88003, USA; (K.A.H.); (K.I.Y.)
| | - Amy R. Hudson
- Big Data Initiative and SCINet Program for Scientific Computing, Agricultural Research Service, US Department of Agriculture, Beltsville, MD 20704, USA; (A.R.H.); (D.P.C.P.)
| | - Katherine I. Young
- Department of Biology, New Mexico State University, Las Cruces, NM 88003, USA; (K.A.H.); (K.I.Y.)
| | - Dannele Peck
- Northern Plains Climate Hub, US Department of Agriculture, Fort Collins, CO 80526, USA;
| | - Luis L. Rodriguez
- Plum Island Animal Disease Center, US Department of Agriculture, Orient Point, NY 11957, USA;
| | - Debra P. C. Peters
- Big Data Initiative and SCINet Program for Scientific Computing, Agricultural Research Service, US Department of Agriculture, Beltsville, MD 20704, USA; (A.R.H.); (D.P.C.P.)
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118
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Che X, Zhang M, Zhao X, Zhang Q, Zhao Y, Møller AP, Zou F. Long-term trends in the phylogenetic and functional diversity of Anatidae in South China coastal wetlands. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2021; 31:e02344. [PMID: 33817885 PMCID: PMC8459242 DOI: 10.1002/eap.2344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 07/24/2020] [Accepted: 01/15/2021] [Indexed: 06/12/2023]
Abstract
Species loss has attracted much attention among scientists for more than half a century. However, we have little information on the trends in phylogenetic and functional changes behind the species loss although this information is always asynchronous and important for conservation and management. We measured community trends in Anatidae (ducks and geese) for the last 50 yr to quantify trends in phylogenetic and functional diversity patterns coinciding with taxonomic historical dynamics. We used one-way ANOVAs to test if there was a significant historical trend in communities of Anatidae. We characterized taxonomic, phylogenetic, and functional diversity of communities. For taxonomic diversity, we used species richness (SR). For phylogenetic diversity, we calculated the standardized effect size of mean pairwise distances (ses.MPD) and the standard effect size of mean nearest taxon distances (ses.MNTD) in communities. For functional diversity, we calculated functional richness (FRic), functional evenness (FEve), functional divergence (FDiv), and the community-level weighted means (CWM) of trait values for diet, foraging stratum, and body mass, separately. From the 1950s to 2010s, species richness declined without significant trends. The ses.MNTD of Anatidae communities showed no clear trends. However, ses.MPD of Anatidae communities declined dramatically during this period. For functional diversity, functional evenness of diet, foraging stratum, body mass, and functional dispersion of diet, foraging stratum did not increase or decline significantly. However, functional evenness of all traits, functional richness, and functional dispersion of body mass showed declined trends. The basic phylogenetic diversity and species body mass of Anatidae communities declined significantly because of a declining trend in the relative independent branch of geese. This makes it more challenging for implement community recovery in the future. More attention in conservation biology should consider taxonomic diversity and asynchrony in phylogenetic and functional diversity.
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Affiliation(s)
- Xianli Che
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
| | - Min Zhang
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
| | - Xuebing Zhao
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
| | - Qiang Zhang
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
| | - Yanyan Zhao
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
| | - Anders Pape Møller
- Ecologie Systématique EvolutionUniversité Paris‐Sud, CNRSAgroParisTechUniversité Paris‐SaclayBâtiment 362ParisOrsay F‐91405France
| | - Fasheng Zou
- Guangdong Key Laboratory of Animal Conservation and Resource UtilizationGuangdong Public Laboratory of Wild Animal Conservation and UtilizationInstitute of Zoology, Guangdong Academy of Sciences105 west xingang roadGuangzhouGuangdong510260China
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119
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Richter A, Nakamura G, Agra Iserhard C, da Silva Duarte L. The hidden side of diversity: Effects of imperfect detection on multiple dimensions of biodiversity. Ecol Evol 2021; 11:12508-12519. [PMID: 34594516 PMCID: PMC8462181 DOI: 10.1002/ece3.7995] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Accepted: 07/15/2021] [Indexed: 11/08/2022] Open
Abstract
Studies on ecological communities often address patterns of species distribution and abundance, but few consider uncertainty in counts of both species and individuals when computing diversity measures.We evaluated the extent to which imperfect detection may influence patterns of taxonomic, functional, and phylogenetic diversity in ecological communities.We estimated the true abundance of fruit-feeding butterflies sampled in canopy and understory strata in a subtropical forest. We compared the diversity values calculated by observed and estimated abundance data through the hidden diversity framework. This framework evaluates the deviation of observed diversity when compared with diversities derived from estimated true abundances and whether such deviation represents a bias or a noise in the observed diversity pattern.The hidden diversity values differed between strata for all diversity measures, except for functional richness. The taxonomic measure was the only one where we observed an inversion of the most diverse stratum when imperfect detection was included. Regarding phylogenetic and functional measures, the strata showed distinct responses to imperfect detection, despite the tendency to overestimate observed diversity. While the understory showed noise for the phylogenetic measure, since the observed pattern was maintained, the canopy had biased diversity for the functional metric. This bias occurred since no significant differences were found between strata for observed diversity, but rather for estimated diversity, with the canopy being more clustered.We demonstrate that ignore imperfect detection may lead to unrealistic estimates of diversity and hence to erroneous interpretations of patterns and processes that structure biological communities. For fruit-feeding butterflies, according to their phylogenetic position or functional traits, the undetected individuals triggered different responses in the relationship of the diversity measures to the environmental factor. This highlights the importance to evaluate and include the uncertainty in species detectability before calculating biodiversity measures to describe communities.
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Affiliation(s)
- Aline Richter
- Departamento de EcologiaUniversidade Federal do Rio Grande do SulPorto AlegreBrazil
| | - Gabriel Nakamura
- Departamento de BiologiaUniversidade Federal do CearáFortalezaBrazil
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120
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Chao A, Henderson PA, Chiu C, Moyes F, Hu K, Dornelas M, Magurran AE. Measuring temporal change in alpha diversity: A framework integrating taxonomic, phylogenetic and functional diversity and the
iNEXT.3D
standardization. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13682] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anne Chao
- Institute of Statistics National Tsing Hua University Hsin‐Chu Taiwan
| | | | - Chun‐Huo Chiu
- Department of Agronomy National Taiwan University Taipei Taiwan
| | - Faye Moyes
- Centre for Biological Diversity and Scottish Oceans Institute, School of Biology University of St Andrews St Andrews Fife UK
| | - Kai‐Hsiang Hu
- Institute of Statistics National Tsing Hua University Hsin‐Chu Taiwan
| | - Maria Dornelas
- Centre for Biological Diversity and Scottish Oceans Institute, School of Biology University of St Andrews St Andrews Fife UK
| | - Anne E. Magurran
- Centre for Biological Diversity and Scottish Oceans Institute, School of Biology University of St Andrews St Andrews Fife UK
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121
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Griffiths AR, Silman MR, Farfan-Rios W, Feeley KJ, Cabrera KG, Meir P, Salinas N, Segovia RA, Dexter KG. Evolutionary Diversity Peaks at Mid-Elevations Along an Amazon-to-Andes Elevation Gradient. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.680041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Elevation gradients present enigmatic diversity patterns, with trends often dependent on the dimension of diversity considered. However, focus is often on patterns of taxonomic diversity and interactions between diversity gradients and evolutionary factors, such as lineage age, are poorly understood. We combine forest census data with a genus level phylogeny representing tree ferns, gymnosperms, angiosperms, and an evolutionary depth of 382 million years, to investigate taxonomic and evolutionary diversity patterns across a long tropical montane forest elevation gradient on the Amazonian flank of the Peruvian Andes. We find that evolutionary diversity peaks at mid-elevations and contrasts with taxonomic richness, which is invariant from low to mid-elevation, but then decreases with elevation. We suggest that this trend interacts with variation in the evolutionary ages of lineages across elevation, with contrasting distribution trends between younger and older lineages. For example, while 53% of young lineages (originated by 10 million years ago) occur only below ∼1,750 m asl, just 13% of old lineages (originated by 110 million years ago) are restricted to below ∼1,750 m asl. Overall our results support an Environmental Crossroads hypothesis, whereby a mid-gradient mingling of distinct floras creates an evolutionary diversity in mid-elevation Andean forests that rivals that of the Amazonian lowlands.
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122
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Tretyakova AS, Yakimov BN, Kondratkov PV, Grudanov NY, Cadotte MW. Phylogenetic Diversity of Urban Floras in the Central Urals. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.663244] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Modern cities harbor a high diversity of plants, and urban floras are significantly different from non-urban floras especially when considering the proportion of alien species found in cities. However, it is not clear whether urban areas disproportionately select for species from relatively few evolutionary lineages or provide opportunities for species across the full spectrum of plant lineages. Here, we examined the taxonomic and phylogenetic diversity of the floras in four cities (Yekaterinburg, Kamensk-Uralsky, Krasnoufimsk, and Turinsk) in the understudied region of Central Urals (Russian Federation). We classified native species into indigenous and apophytic species, namely, those that are sensitive to anthropogenic disturbance and those that have expanded their range with human activity, respectively. Alien species were classified into archaeophytes and neophytes according to when they were introduced (i.e., before or after than 1800). Phylogenetic diversity was quantified using Faith’s index to reflect total evolutionary history in urban areas and mean phylogenetic distance (MPD) to reflect species dissimilarity. Phylogenetic diversity of native species was higher than that for alien species, and the standardized effect size (SES) of MPD for natives was positive, reflecting their general dissimilarity from one another, while it was very negative for aliens, showing that they were phylogenetically clustered. However, among natives, apophytes were significantly clustered, while indigenous species were overdispersed. For the aliens, MPD was higher for archaeophytes compared to neophytes, though both groups were significantly clustered. These results show that urbanization leads to a non-random selection of plants. Apophytes and alien plants were composed of closely related species, reflecting similar ecological traits and are likely to be pre-adapted to the environmentally altered and highly disturbed urban environment.
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123
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Simon ADF, Marx HE, Starzomski BM. Phylogenetic restriction of plant invasion in drought-stressed environments: Implications for insect-pollinated plant communities in water-limited ecosystems. Ecol Evol 2021; 11:10042-10053. [PMID: 34367557 PMCID: PMC8328464 DOI: 10.1002/ece3.7776] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 05/15/2021] [Accepted: 05/18/2021] [Indexed: 11/08/2022] Open
Abstract
BACKGROUND Plant-pollinator community diversity has been found to decrease under conditions of drought stress; however, research into the temporal dimensions of this phenomenon remains limited. In this study, we investigated the effect of seasonal drought on the temporal niche dynamics of entomophilous flowering plants in a water-limited ecosystem. We hypothesized that closely related native and exotic plants would tend to share similar life history and that peak flowering events would therefore coincide with phylogenetic clustering in plant communities based on expected phenological responses of plant functional types to limitations in soil moisture availability. LOCATION Galiano Island, British Columbia, Canada. METHODS Combining methods from pollinator research and phylogenetic community ecology, we tested the influence of environmental filtering over plant community phenology across gradients of landscape disturbance and soil moisture. Floral resource availability and community structure were quantified by counts of flowering shoots. We constructed a robust phylogeny to analyze spatial and temporal variation in phylogenetic patterns across the landscape, testing the significance of the observed patterns against a randomly generated community phylogeny. Phylogenetic metrics were then regressed against factors of disturbance and soil moisture availability. RESULTS Critical seasonal fluctuations in floral resources coincided with significant phylogenetic clustering in plant communities, with decreasing plant diversity observed under conditions of increasing drought stress. Exotic plant species in the Asteraceae became increasingly pervasive across the landscape, occupying a late season temporal niche in drought-stressed environments. MAIN CONCLUSION Results suggest that environmental filtering is the dominant assembly process structuring the temporal niche of plant communities in this water-limited ecosystem. Based on these results, and trends seen elsewhere, the overall diversity of plant-pollinator communities may be expected to decline with the increasing drought stress predicted under future climate scenarios.
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Affiliation(s)
| | - Hannah E. Marx
- Department of BiologyUniversity of New MexicoAlbuquerqueNMUSA
- Museum of Southwestern BiologyAlbuquerqueNMUSA
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Li X, Yang T, Wang D. Phylogenetic and functional structures of succession in plant communities on mounds of Marmota himalayana in alpine regions on the northeast edge of the Qinghai-Tibet Plateau. PLANT DIVERSITY 2021; 43:275-280. [PMID: 34485769 PMCID: PMC8390913 DOI: 10.1016/j.pld.2021.04.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 04/19/2021] [Accepted: 04/22/2021] [Indexed: 06/13/2023]
Abstract
Few studies have examined the succession of plant communities in the alpine zone. Studying the succession of plant communities is helpful to understand how species diversity is formed and maintained. In this study, we used species inventories, a molecular phylogeny, and trait data to detect patterns of phylogenetic and functional community structure in successional plant communities growing on the mounds of Himalayan marmots (Marmota himalayana) on the southeast edge of the Qinghai-Tibet Plateau. We found that phylogenetic and functional diversities of plant communities on marmot mounds tended to cluster during the early to medium stages of succession, then trended toward overdispersion from medium to late stages. Alpine species in early and late stages of succession were phylogenetically and functionally overdispersed, suggesting that such communities were assembled mainly through species interactions, especially competition. At the medium and late stages of succession, alpine communities growing on marmot mounds were phylogenetically and functionally clustered, implying that the communities were primarily structured by environmental filtering. During the medium and late stages of succession the phylogenetic and functional structures of plant communities on marmot mounds differed significantly from those on neighboring sites. Our results indicate that environmental filtering and species interactions can change plant community composition at different successional stages. Assembly of plant communities on marmot mounds was promoted by a combination of traits that may provide advantages for survival and adaptation during periods of environmental change.
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Affiliation(s)
- Xinhui Li
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
| | - Tao Yang
- College of Ecology and Environment, Yunnan University, Kunming, 650504, China
| | - Dandan Wang
- Guizhou University of Traditional Chinese Medicine, Guiyang, 550025, China
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125
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Kosicki JZ. The impact of artificial light at night on taxonomic, functional and phylogenetic bird species communities in a large geographical range: A modelling approach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 780:146434. [PMID: 33774297 DOI: 10.1016/j.scitotenv.2021.146434] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/24/2021] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
Artificial light at night (ALAN) is currently recognised as an important environmental disturbance that influences habitats, fitness and behaviour of numerous organisms. However, its effect on bird community distribution on a large spatial scale still remains unclear. Therefore, I decided to use a predictive approach to test an assumption that artificial nightlight, as one of 73 predictors, determines taxonomic, functional and phylogenetic levels of an avian community. In order to safeguard inference from any inconsistency, I used not one but four indices describing functional diversity, two measures showing phylogenetic species richness, and one reflecting taxonomic diversity. For all these measures of species communities I developed two sets of Random Forest models: one set included ALAN as an additional predictor, while the other did not. Following cross validation tests as well as an independent evaluation of models, I demonstrated that artificial night light improved the performance of predictive models. Taxonomic species richness decreased linearly along with increasing artificial luminescence. Moreover, functional diversity showed a unimodal relation to ALAN, which meant that most niches were occupied on a moderate level of artificial lighting. Finally, phylogenetic diversity was under the highest pressure of ALAN, because even a minimal amount of artificial night lighting radically reduced this measure of biodiversity. On the basis of predictive maps, I also found that models which did not include urbanisation processes showed high values of avian biodiversity in regions where in fact they were low. Thus, I conclude that ALAN as a human footprint can play a key role when analysing the distribution of bird communities on large spatial scales.
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Affiliation(s)
- Jakub Z Kosicki
- Department of Avian Biology & Ecology, Faculty of Biology, Adam Mickiewicz University, Poznań, ul. Uniwersytetu Poznańskiego 6, 61 - 614 Poznań, Poland.
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126
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Mammola S, Carmona CP, Guillerme T, Cardoso P. Concepts and applications in functional diversity. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13882] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe) Finnish Museum of Natural History (Luomus) University of Helsinki Helsinki Finland
- Molecular Ecology Group (MEG) Water Research InstituteNational Research Council (CNR‐IRSA) Verbania Pallanza Italy
| | - Carlos P. Carmona
- Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Thomas Guillerme
- Department of Animal and Plant Sciences The University of Sheffield Sheffield UK
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe) Finnish Museum of Natural History (Luomus) University of Helsinki Helsinki Finland
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127
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Cássia-Silva C, Freitas CG, Jardim L, Bacon CD, Collevatti RG. In situ radiation explains the frequency of dioecious palms on islands. ANNALS OF BOTANY 2021; 128:205-215. [PMID: 33949659 PMCID: PMC8324027 DOI: 10.1093/aob/mcab056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND AIMS Dioecy has evolved up to 5000 times in angiosperms, despite the potentially high intrinsic costs to unisexuality. Dioecy prevents inbreeding, which is especially relevant on isolated islands when gene pools are small. Dioecy is also associated with certain dispersal traits, such as fruit size and type. However, the influence of dioecy on other life history traits and island distribution remains poorly understood. Here, we test the effect of dioecy on palm (Arecaceae) speciation rates, fruit size and frequency on islands. METHODS We used phylogenetic comparative methods to estimate the ancestral state of the sexual system and its impact on speciation rates and fruit size. Frequency of sexual systems, effect of insularity on the probability of being dioecious, and phylogenetic clustering of island dioecious vs. mainland species were inferred. Lastly, we determined the interplay of insularity and sexual system on speciation rates. KEY RESULTS Palms repeatedly evolved different sexual systems (dioecy, monoecy and polygamy) from a hermaphrodite origin. Differences in speciation rates and fruit size among the different sexual systems were not identified. An effect of islands on the probability of the palms being dioecious was also not found. However, we found a high frequency and phylogenetic clustering of dioecious palms on islands, which were not correlated with higher speciation rates. CONCLUSIONS The high frequency and phylogenetic clustering may be the result of in situ radiation and suggest an 'island effect' for dioecious palms, which was not explained by differential speciation rates. This island effect also cannot be attributed to long-distance dispersal due to the lack of fruit size difference among sexual systems, and particularly because palm dispersal to islands is highly constrained by the interaction between the sizes of fruit and frugivores. Taken together, we suggest that trait flexibility in sexual system evolution and the in situ radiation of dioecious lineages are the underlying causes of the outstanding distribution of palms on islands.
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Affiliation(s)
- Cibele Cássia-Silva
- Laboratório de Genética & Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil
| | - Cíntia G Freitas
- Pós-Graduação em Ecologia e Conservação, Setor de Ciências Biológicas, Universidade Federal do Paraná, Curitiba, PR, Brazil
| | - Lucas Jardim
- Laboratório de Ecologia Teórica e Síntese, Departamento de Ecologia, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil
| | - Christine D Bacon
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | - Rosane G Collevatti
- Laboratório de Genética & Biodiversidade, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brazil
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128
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Jin L, Liu JJ, Xiao TW, Li QM, Lin LX, Shao XN, Ma CX, Li BH, Mi XC, Ren HB, Qiao XJ, Lian JY, Hao G, Ge XJ. Plastome-based phylogeny improves community phylogenetics of subtropical forests in China. Mol Ecol Resour 2021; 22:319-333. [PMID: 34233085 DOI: 10.1111/1755-0998.13462] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 06/22/2021] [Accepted: 07/01/2021] [Indexed: 11/30/2022]
Abstract
Phylogenetic trees have been extensively used in community ecology. However, how the phylogeny construction affects ecological inferences is poorly understood. In this study, we constructed three different types of phylogenetic trees (a synthetic-tree generated using V.PhyloMaker, a barcode-tree generated using rbcL+matK+trnH-psbA, and a plastome-tree generated from plastid genomes) that represented an increasing level of phylogenetic resolution among 580 woody plant species from six forest dynamic plots in subtropical evergreen broadleaved forests of China. We then evaluated the performance of each phylogeny in estimations of community phylogenetic structure, turnover and phylogenetic signal in functional traits. As expected, the plastome-tree was most resolved and most supported for relationships among species. For local phylogenetic structure, the three trees showed consistent results with Faith's PD and MPD; however, only the synthetic-tree produced significant clustering patterns using MNTD for some plots. For phylogenetic turnover, contrasting results between the molecular trees and the synthetic-tree occurred only with nearest neighbor distance. The barcode-tree agreed more with the plastome-tree than the synthetic-tree for both phylogenetic structure and turnover. For functional traits, both the barcode-tree and plastome-tree detected phylogenetic signal in maximum height, but only the plastome-tree detected signal in leaf width. This is the first study that uses plastid genomes in large-scale community phylogenetics. Our results highlight the improvement of plastome-trees over barcode-trees and synthetic-trees for the analyses studied here. Our results also point to the possibility of type I and II errors in estimation of phylogenetic structure and turnover and detection of phylogenetic signal when using synthetic-trees.
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Affiliation(s)
- Lu Jin
- College of Life Sciences, South China Agricultural University, Guangzhou, China.,Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Jia-Jia Liu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Tian-Wen Xiao
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Qiao-Ming Li
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China
| | - Lu-Xiang Lin
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China
| | - Xiao-Na Shao
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Chen-Xin Ma
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Bu-Hang Li
- School of Life Sciences, Sun Yat-Sen University, Guangzhou, China
| | - Xiang-Cheng Mi
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Hai-Bao Ren
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xiu-Juan Qiao
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.,Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, China
| | - Ju-Yu Lian
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, China
| | - Gang Hao
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Xue-Jun Ge
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
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129
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Cordier T, Alonso‐Sáez L, Apothéloz‐Perret‐Gentil L, Aylagas E, Bohan DA, Bouchez A, Chariton A, Creer S, Frühe L, Keck F, Keeley N, Laroche O, Leese F, Pochon X, Stoeck T, Pawlowski J, Lanzén A. Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap. Mol Ecol 2021; 30:2937-2958. [PMID: 32416615 PMCID: PMC8358956 DOI: 10.1111/mec.15472] [Citation(s) in RCA: 84] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 04/25/2020] [Accepted: 05/06/2020] [Indexed: 01/02/2023]
Abstract
A decade after environmental scientists integrated high-throughput sequencing technologies in their toolbox, the genomics-based monitoring of anthropogenic impacts on the biodiversity and functioning of ecosystems is yet to be implemented by regulatory frameworks. Despite the broadly acknowledged potential of environmental genomics to this end, technical limitations and conceptual issues still stand in the way of its broad application by end-users. In addition, the multiplicity of potential implementation strategies may contribute to a perception that the routine application of this methodology is premature or "in development", hence restraining regulators from binding these tools into legal frameworks. Here, we review recent implementations of environmental genomics-based methods, applied to the biomonitoring of ecosystems. By taking a general overview, without narrowing our perspective to particular habitats or groups of organisms, this paper aims to compare, review and discuss the strengths and limitations of four general implementation strategies of environmental genomics for monitoring: (a) Taxonomy-based analyses focused on identification of known bioindicators or described taxa; (b) De novo bioindicator analyses; (c) Structural community metrics including inferred ecological networks; and (d) Functional community metrics (metagenomics or metatranscriptomics). We emphasise the utility of the three latter strategies to integrate meiofauna and microorganisms that are not traditionally utilised in biomonitoring because of difficult taxonomic identification. Finally, we propose a roadmap for the implementation of environmental genomics into routine monitoring programmes that leverage recent analytical advancements, while pointing out current limitations and future research needs.
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Affiliation(s)
- Tristan Cordier
- Department of Genetics and EvolutionScience IIIUniversity of GenevaGenevaSwitzerland
| | - Laura Alonso‐Sáez
- AZTIMarine ResearchBasque Research and Technology Alliance (BRTA)Spain
| | | | - Eva Aylagas
- Red Sea Research Center (RSRC)Biological and Environmental Sciences and Engineering (BESE)King Abdullah University of Science and Technology (KAUST)ThuwalSaudi Arabia
| | - David A. Bohan
- AgroécologieINRAEUniversity of BourgogneUniversity Bourgogne Franche‐ComtéDijonFrance
| | | | - Anthony Chariton
- Department of Biological SciencesMacquarie UniversitySydneyNSWAustralia
| | - Simon Creer
- School of Natural SciencesBangor UniversityGwyneddUK
| | - Larissa Frühe
- Department of EcologyTechnische Universität KaiserslauternKaiserslauternGermany
| | | | - Nigel Keeley
- Benthic Resources and Processes GroupInstitute of Marine ResearchTromsøNorway
| | - Olivier Laroche
- Benthic Resources and Processes GroupInstitute of Marine ResearchTromsøNorway
| | - Florian Leese
- Aquatic Ecosystem ResearchFaculty of BiologyUniversity of Duisburg‐EssenEssenGermany
- Centre for Water and Environmental Research (ZWU)University of Duisburg‐EssenEssenGermany
| | - Xavier Pochon
- Coastal & Freshwater GroupCawthron InstituteNelsonNew Zealand
- Institute of Marine ScienceUniversity of AucklandWarkworthNew Zealand
| | - Thorsten Stoeck
- Department of EcologyTechnische Universität KaiserslauternKaiserslauternGermany
| | - Jan Pawlowski
- Department of Genetics and EvolutionScience IIIUniversity of GenevaGenevaSwitzerland
- ID‐Gene EcodiagnosticsGenevaSwitzerland
- Institute of OceanologyPolish Academy of SciencesSopotPoland
| | - Anders Lanzén
- AZTIMarine ResearchBasque Research and Technology Alliance (BRTA)Spain
- Basque Foundation for ScienceIKERBASQUEBilbaoSpain
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130
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Lahiri S, Pathaw NA, Krishnan A. Convergent acoustic community structure in South Asian dry and wet grassland birds. Biol Open 2021; 10:269190. [PMID: 34142707 PMCID: PMC8272033 DOI: 10.1242/bio.058612] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 05/20/2021] [Indexed: 11/20/2022] Open
Abstract
Although the study of bird acoustic communities has great potential in long-term monitoring and conservation, their assembly and dynamics remain poorly understood. Grassland habitats in South Asia comprise distinct biomes with unique avifauna, presenting an opportunity to address how community-level patterns in acoustic signal space arise. Similarity in signal space of different grassland bird assemblages may result from phylogenetic similarity, or because different bird groups partition the acoustic resource, resulting in convergent distributions in signal space. Here, we quantify the composition, signal space and phylogenetic diversity of bird acoustic communities from dry semiarid grasslands of northwest India and wet floodplain grasslands of northeast India, two major South Asian grassland biomes. We find that acoustic communities occupying these distinct biomes exhibit convergent, overdispersed distributions in signal space. However, dry grasslands exhibit higher phylogenetic diversity, and the two communities are not phylogenetically similar. The Sylvioidea encompasses half the species in the wet grassland acoustic community, with an expanded signal space compared to the dry grasslands. We therefore hypothesize that different clades colonizing grasslands partition the acoustic resource, resulting in convergent community structure across biomes. Many of these birds are threatened, and acoustic monitoring will support conservation measures in these imperiled, poorly-studied habitats. This article has an associated First Person interview with the first author of the paper. Summary: Acoustic communities of different grassland biomes exhibit convergent signal space in spite of dissimilar species compositions.
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Affiliation(s)
- Sutirtha Lahiri
- Department of Biology, Indian Institute of Science Education and Research (IISER) Pune, Pashan Road, Pune 411008, India
| | - Nafisa A Pathaw
- Department of Biology, Indian Institute of Science Education and Research (IISER) Pune, Pashan Road, Pune 411008, India
| | - Anand Krishnan
- Department of Biology, Indian Institute of Science Education and Research (IISER) Pune, Pashan Road, Pune 411008, India
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131
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Effects of management outweigh effects of plant diversity on restored animal communities in tallgrass prairies. Proc Natl Acad Sci U S A 2021; 118:2015421118. [PMID: 33495327 DOI: 10.1073/pnas.2015421118] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A primary goal of ecological restoration is to increase biodiversity in degraded ecosystems. However, the success of restoration ecology is often assessed by measuring the response of a single functional group or trophic level to restoration, without considering how restoration affects multitrophic interactions that shape biodiversity. An ecosystem-wide approach to restoration is therefore necessary to understand whether animal responses to restoration, such as changes in biodiversity, are facilitated by changes in plant communities (plant-driven effects) or disturbance and succession resulting from restoration activities (management-driven effects). Furthermore, most restoration ecology studies focus on how restoration alters taxonomic diversity, while less attention is paid to the response of functional and phylogenetic diversity in restored ecosystems. Here, we compared the strength of plant-driven and management-driven effects of restoration on four animal communities (ground beetles, dung beetles, snakes, and small mammals) in a chronosequence of restored tallgrass prairie, where sites varied in management history (prescribed fire and bison reintroduction). Our analyses indicate that management-driven effects on animal communities were six-times stronger than effects mediated through changes in plant biodiversity. Additionally, we demonstrate that restoration can simultaneously have positive and negative effects on biodiversity through different pathways, which may help reconcile variation in restoration outcomes. Furthermore, animal taxonomic and phylogenetic diversity responded differently to restoration, suggesting that restoration plans might benefit from considering multiple dimensions of animal biodiversity. We conclude that metrics of plant diversity alone may not be adequate to assess the success of restoration in reassembling functional ecosystems.
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132
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Barthelemy E, Fortunel C, Jaunatre M, Munoz F. Imprints of Past Habitat Area Reduction on Extant Taxonomic, Functional, and Phylogenetic Composition. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.634413] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Past environmental changes have shaped the evolutionary and ecological diversity of extant organisms. Specifically, climatic fluctuations have made environmental conditions alternatively common or rare over time. Accordingly, most taxa have undergone restriction of their distribution to local refugia during habitat contraction, from which they could expand when suitable habitat became more common. Assessing how past restrictions in refugia have shaped species distributions and genetic diversity has motivated much research in evolutionary biology and biogeography. But there is still lack of clear synthesis on whether and how the taxonomic, functional and phylogenetic composition of extant multispecies assemblages retains the imprint of past restriction in refugia. We devised an original eco-evolutionary model to investigate the temporal dynamics of a regional species pool inhabiting a given habitat today, and which have experienced habitat reduction in the past. The model includes three components: (i) a demographic component driving stochastic changes in population sizes and extinctions due to habitat availability, (ii) a mutation and speciation component representing how divergent genotypes emerge and define new species over time, and (iii) a trait evolution component representing how trait values have changed across descendants over time. We used this model to simulate dynamics of multispecies assemblages that occupied a restricted refugia in the past and could expand their distribution subsequently. We characterized the past restriction in refugia in terms of two parameters representing the ending time of past refugia, and the extent of habitat restriction in the refugia. We characterized extant patterns of taxonomic, functional and phylogenetic diversity depending on these parameters. We found that extant relative abundances reflect the lasting influence of more recent refugia on demographic dynamics, while phylogenetic composition reflects the influence of more ancient habitat change. Extant functional diversity depends on the interplay between diversification dynamics and trait evolution, offering new options to jointly infer current trait adaptation and past trait evolution dynamics.
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133
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Luong JC, Holl KD, Loik ME. Leaf traits and phylogeny explain plant survival and community dynamics in response to extreme drought in a restored coastal grassland. J Appl Ecol 2021. [DOI: 10.1111/1365-2664.13909] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin C. Luong
- Department of Environmental Studies University of California Santa Cruz CA USA
| | - Karen D. Holl
- Department of Environmental Studies University of California Santa Cruz CA USA
| | - Michael E. Loik
- Department of Environmental Studies University of California Santa Cruz CA USA
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134
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Li Y, Chesters D, Wang M, Wubet T, Schuldt A, Anttonen P, Guo P, Chen J, Zhou Q, Zhang N, Ma K, Bruelheide H, Wu C, Zhu C. Tree diversity and functional leaf traits drive herbivore-associated microbiomes in subtropical China. Ecol Evol 2021; 11:6153-6166. [PMID: 34141209 PMCID: PMC8207151 DOI: 10.1002/ece3.7434] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 02/13/2021] [Accepted: 02/18/2021] [Indexed: 12/13/2022] Open
Abstract
Herbivorous insects acquire microorganisms from host plants or soil, but it remains unclear how the diversity and functional composition of host plants contribute to structuring herbivore microbiomes. Within a controlled tree diversity setting, we used DNA metabarcoding of 16S rRNA to assess the contribution of Lepidoptera species and their local environment (particularly, tree diversity, host tree species, and leaf traits) to the composition of associated bacterial communities. In total, we obtained 7,909 bacterial OTUs from 634 caterpillar individuals comprising 146 species. Tree diversity was found to drive the diversity of caterpillar-associated bacteria both directly and indirectly via effects on caterpillar communities, and tree diversity was a stronger predictor of bacterial diversity than diversity of caterpillars. Leaf toughness and dry matter content were important traits of the host plant determining bacterial species composition, while leaf calcium and potassium concentration influenced bacterial richness. Our study reveals previously unknown linkages between trees and their characteristics, herbivore insects, and their associated microbes, which contributes to developing a more nuanced understanding of functional dependencies between herbivores and their environment, and has implications for the consequences of plant diversity loss for trophic interactions.
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Affiliation(s)
- Yi Li
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- College of Biological SciencesUniversity of Chinese Academy of SciencesBeijingChina
| | - Douglas Chesters
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
| | - Ming‐Qiang Wang
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- College of Biological SciencesUniversity of Chinese Academy of SciencesBeijingChina
| | - Tesfaye Wubet
- Department of Community EcologyHelmholtz Centre for Environmental ResearchHalle/SaaleGermany
| | - Andreas Schuldt
- Forest Nature ConservationGeorg‐August‐University GöttingenGöttingenGermany
| | - Perttu Anttonen
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalleGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Peng‐Fei Guo
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- College of Plant ProtectionYunnan Agriculture UniversityYunnanChina
| | - Jing‐Ting Chen
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- College of Biological SciencesUniversity of Chinese Academy of SciencesBeijingChina
| | - Qing‐Song Zhou
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
| | - Nai‐Li Zhang
- Research Center of Forest Management Engineering of State Forestry and Grassland AdministrationBeijing Forestry UniversityBeijingChina
| | - Ke‐Ping Ma
- College of Biological SciencesUniversity of Chinese Academy of SciencesBeijingChina
- State Key Laboratory of Vegetation and Environmental ChangeInstitute of BotanyChinese Academy of SciencesBeijingChina
| | - Helge Bruelheide
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalleGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Chun‐Sheng Wu
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
| | - Chao‐Dong Zhu
- Key Laboratory of Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- College of Biological SciencesUniversity of Chinese Academy of SciencesBeijingChina
- State Key Laboratory of Integrated Pest ManagementInstitute of ZoologyChinese Academy of SciencesBeijingChina
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135
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Folk RA, Siniscalchi CM. Biodiversity at the global scale: the synthesis continues. AMERICAN JOURNAL OF BOTANY 2021; 108:912-924. [PMID: 34181762 DOI: 10.1002/ajb2.1694] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 04/14/2021] [Indexed: 06/13/2023]
Abstract
Traditionally, the generation and use of biodiversity data and their associated specimen objects have been primarily the purview of individuals and small research groups. While deposition of data and specimens in herbaria and other repositories has long been the norm, throughout most of their history, these resources have been accessible only to a small community of specialists. Through recent concerted efforts, primarily at the level of national and international governmental agencies over the last two decades, the pace of biodiversity data accumulation has accelerated, and a wider array of biodiversity scientists has gained access to this massive accumulation of resources, applying them to an ever-widening compass of research pursuits. We review how these new resources and increasing access to them are affecting the landscape of biodiversity research in plants today, focusing on new applications across evolution, ecology, and other fields that have been enabled specifically by the availability of these data and the global scope that was previously beyond the reach of individual investigators. We give an overview of recent advances organized along three lines: broad-scale analyses of distributional data and spatial information, phylogenetic research circumscribing large clades with comprehensive taxon sampling, and data sets derived from improved accessibility of biodiversity literature. We also review synergies between large data resources and more traditional data collection paradigms, describe shortfalls and how to overcome them, and reflect on the future of plant biodiversity analyses in light of increasing linkages between data types and scientists in our field.
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Affiliation(s)
- Ryan A Folk
- Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, USA
| | - Carolina M Siniscalchi
- Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, USA
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136
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Rihtman B, Puxty RJ, Hapeshi A, Lee YJ, Zhan Y, Michniewski S, Waterfield NR, Chen F, Weigele P, Millard AD, Scanlan DJ, Chen Y. A new family of globally distributed lytic roseophages with unusual deoxythymidine to deoxyuridine substitution. Curr Biol 2021; 31:3199-3206.e4. [PMID: 34033748 PMCID: PMC8323127 DOI: 10.1016/j.cub.2021.05.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/19/2021] [Accepted: 05/10/2021] [Indexed: 01/27/2023]
Abstract
Marine bacterial viruses (bacteriophages) are abundant biological entities that are vital for shaping microbial diversity, impacting marine ecosystem function, and driving host evolution.1, 2, 3 The marine roseobacter clade (MRC) is a ubiquitous group of heterotrophic bacteria4,5 that are important in the elemental cycling of various nitrogen, sulfur, carbon, and phosphorus compounds.6, 7, 8, 9, 10 Bacteriophages infecting MRC (roseophages) have thus attracted much attention and more than 30 roseophages have been isolated,11, 12, 13 the majority of which belong to the N4-like group (Podoviridae family) or the Chi-like group (Siphoviridae family), although ssDNA-containing roseophages are also known.14 In our attempts to isolate lytic roseophages, we obtained two new phages (DSS3_VP1 and DSS3_PM1) infecting the model MRC strain Ruegeria pomeroyi DSS-3. Here, we show that not only do these phages have unusual substitution of deoxythymidine with deoxyuridine (dU) in their DNA, but they are also phylogenetically distinct from any currently known double-stranded DNA bacteriophages, supporting the establishment of a novel family (“Naomiviridae”). These dU-containing phages possess DNA that is resistant to the commonly used library preparation method for metagenome sequencing, which may have caused significant underestimation of their presence in the environment. Nevertheless, our analysis of Tara Ocean metagenome datasets suggests that these unusual bacteriophages are of global importance and more diverse than other well-known bacteriophages, e.g., the Podoviridae in the oceans, pointing to an overlooked role for these novel phages in the environment. Two new roseophages isolated from the marine environment They have an unusual deoxythymidine to deoxyuridine substitution in their genomes These dU genomes are resistant to a common method of metagenome library preparation These phages represent a new family and are globally distributed in the oceans
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Affiliation(s)
- Branko Rihtman
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK.
| | - Richard J Puxty
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - Alexia Hapeshi
- Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - Yan-Jiun Lee
- Research Department, New England Biolabs, 240 County Road, Ipswich, MA 01938, USA
| | - Yuanchao Zhan
- Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 E. Pratt Street, Baltimore, MD 21202, USA
| | - Slawomir Michniewski
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - Nicholas R Waterfield
- Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - Feng Chen
- Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, 701 E. Pratt Street, Baltimore, MD 21202, USA
| | - Peter Weigele
- Research Department, New England Biolabs, 240 County Road, Ipswich, MA 01938, USA
| | - Andrew D Millard
- Department of Genetics and Genome Biology, College of Life Sciences, University of Leicester, University Road, Leicester LE1 7RH, UK
| | - David J Scanlan
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - Yin Chen
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK.
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137
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Zhong L, Didham RK, Liu J, Jin Y, Yu M. Community re‐assembly and divergence of woody plant traits in an island–mainland system after more than 50 years of regeneration. DIVERS DISTRIB 2021. [DOI: 10.1111/ddi.13290] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Affiliation(s)
- Lei Zhong
- MOE Key Laboratory of Biosystems Homeostasis & Protection College of Life Sciences Zhejiang University Hangzhou China
| | - Raphael K. Didham
- School of Biological Sciences The University of Western Australia Crawley Western Australia Australia
- CSIRO Land and WaterCenter for Environment and Life Science Floreat Western Australia Australia
| | - Jinliang Liu
- College of Life and Environmental Science Wenzhou University Wenzhou China
- National & Local Joint Engineering Research Center for Ecological Treatment Technology of Urban Water Pollution Wenzhou University Wenzhou China
| | - Yi Jin
- State Key Laboratory of Plant Physiology and Development in Guizhou Province School of Life Sciences Guizhou Normal University Guiyang China
| | - Mingjian Yu
- MOE Key Laboratory of Biosystems Homeostasis & Protection College of Life Sciences Zhejiang University Hangzhou China
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138
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Sugai LSM, Llusia D, Siqueira T, Silva TSF. Revisiting the drivers of acoustic similarities in tropical anuran assemblages. Ecology 2021; 102:e03380. [PMID: 33937979 DOI: 10.1002/ecy.3380] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 02/12/2021] [Accepted: 03/16/2021] [Indexed: 01/04/2023]
Abstract
Acoustic signaling is key in mediating mate choice, which directly impacts individual fitness. Because background noise and habitat structure can impair signal transmission, the acoustic space of mixed-species assemblages has long been hypothesized to reflect selective pressures against signal interference and degradation. However, other potential drivers that received far less attention can drive similar outputs on the acoustic space. Phylogenetic niche conservatism and allometric constraints may also modulate species acoustic features, and the acoustic space of communities could be a side-effect of ecological assembly processes involving other traits (e.g., environmental filtering). Additionally, the acoustic space can also reflect the sorting of species relying on public information through extended communication networks. Using an integrative approach, we revisit the potential drivers of the acoustic space by addressing the distribution of acoustic traits, body size, and phylogenetic relatedness in tropical anuran assemblages across gradients of environmental heterogeneity in the Pantanal wetlands. We found the overall acoustic space to be aggregated compared with null expectations, even when accounting for confounding effects of body size. Across assemblages, acoustic and phylogenetic differences were positively related, while acoustic and body size similarities were negatively related, although to a minor extent. We suggest that acoustic partitioning, acoustic adaptation, and allometric constraints play a minor role in shaping the acoustic output of tropical anuran assemblages and that phylogenetic niche conservatism and public information use would influence between-assemblage variation. Our findings highlight an overlooked multivariate nature of the acoustic dimension and underscore the importance of including the ecological context of communities to understand drivers of the acoustic space.
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Affiliation(s)
- Larissa Sayuri Moreira Sugai
- Instituto de Biociências, Universidade Estadual Paulista (Unesp), Rio Claro, São Paulo, 13506-900, Brazil.,Terrestrial Ecology Group (TEG), Departamento de Ecología, Ciudad Universitaria de Cantoblanco, Facultad de Ciencias, Universidad Autónoma de Madrid, C/Darwin, 2, Edificio de Biología, C-211, Madrid, 28049, Spain
| | - Diego Llusia
- Terrestrial Ecology Group (TEG), Departamento de Ecología, Ciudad Universitaria de Cantoblanco, Facultad de Ciencias, Universidad Autónoma de Madrid, C/Darwin, 2, Edificio de Biología, C-211, Madrid, 28049, Spain.,Laboratório de Herpetologia e Comportamento Animal, Departamento de Ecologia, Instituto de Ciências Biológicas, Universidade Federal de Goiás, Campus Samambaia, Goiânia, Goiás, CEP, 74001-970, Brazil.,Centro de Investigación en Biodiversidad y Cambio Global, Ciudad Universitaria de Cantoblanco, Universidad Autónoma de Madrid, C/Darwin 2, Madrid, E-28049, Spain
| | - Tadeu Siqueira
- Instituto de Biociências, Universidade Estadual Paulista (Unesp), Rio Claro, São Paulo, 13506-900, Brazil
| | - Thiago S F Silva
- Instituto de Biociências, Universidade Estadual Paulista (Unesp), Rio Claro, São Paulo, 13506-900, Brazil.,Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, United Kingdom
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139
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Rincón C, Droh G, Villard L, Masclaux FG, N'guetta A, Zeze A, Sanders IR. Hierarchical spatial sampling reveals factors influencing arbuscular mycorrhizal fungus diversity in Côte d'Ivoire cocoa plantations. MYCORRHIZA 2021; 31:289-300. [PMID: 33638731 PMCID: PMC8068719 DOI: 10.1007/s00572-020-01019-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 12/30/2020] [Indexed: 06/12/2023]
Abstract
While many molecular studies have documented arbuscular mycorrhizal fungi (AMF) communities in temperate ecosystems, very few studies exist in which molecular techniques have been used to study tropical AMF communities. Understanding the composition of AMF communities in tropical areas gains special relevance as crop productivity in typically low fertility tropical soils can be improved with the use of AMF. We used a hierarchical sampling approach in which we sampled soil from cocoa (Theobroma cacao L.) plantations nested in localities, and in which localities were nested within each of three regions of Côte d'Ivoire. This sampling strategy, combined with 18S rRNA gene sequencing and a dedicated de novo OTU-picking model, allowed us to study AMF community composition and how it is influenced at different geographical scales and across environmental gradients. Several factors, including pH, influenced overall AMF alpha diversity and differential abundance of specific taxa and families of the Glomeromycotina. Assemblages and diversity metrics at the local scale did not reliably predict those at regional scales. The amount of variation explained by soil, climate, and geography variables left a large proportion of the variance to be explained by other processes, likely happening at smaller scales than the ones considered in this study. Gaining a better understanding of processes involved in shaping tropical AMF community composition and AMF establishment are much needed and could allow for the development of sustainable, productive tropical agroecosystems.
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Affiliation(s)
- Cristian Rincón
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - Germain Droh
- Laboratoire de Génétique, UFR Biosciences, Université Félix Houphouët-Boigny, Abidjan, Côte d'Ivoire
| | - Lucas Villard
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - Frédéric G Masclaux
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - Assanvo N'guetta
- Laboratoire de Génétique, UFR Biosciences, Université Félix Houphouët-Boigny, Abidjan, Côte d'Ivoire
| | - Adolphe Zeze
- Laboratoire de Biotechnologies Végétale Et Microbienne, Unité Mixte de Recherche Et D'Innovation en Sciences Agronomiques Et Génie Rual, Institut National Polytechnique Félix Houphouet-Boigny, Yamoussoukro, Côte d'Ivoire
| | - Ian R Sanders
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
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140
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Zsebők S, Schmera D, Laczi M, Nagy G, Vaskuti É, Török J, Zsolt Garamszegi L. A practical approach to measuring the acoustic diversity by community ecology methods. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13558] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sándor Zsebők
- Institute of Ecology and Botany Centre for Ecological Research Vácrátót Hungary
- Behavioural Ecology Group Department of Systematic Zoology and Ecology ELTEEötvös Loránd University Budapest Hungary
| | - Dénes Schmera
- Balaton Limnological InstituteCentre for Ecological Research Tihany Hungary
| | - Miklós Laczi
- Behavioural Ecology Group Department of Systematic Zoology and Ecology ELTEEötvös Loránd University Budapest Hungary
- The Barn Owl Foundation Orosztony Hungary
| | - Gergely Nagy
- Institute of Ecology and Botany Centre for Ecological Research Vácrátót Hungary
- Behavioural Ecology Group Department of Systematic Zoology and Ecology ELTEEötvös Loránd University Budapest Hungary
| | - Éva Vaskuti
- Institute of Ecology and Botany Centre for Ecological Research Vácrátót Hungary
- Behavioural Ecology Group Department of Systematic Zoology and Ecology ELTEEötvös Loránd University Budapest Hungary
| | - János Török
- Behavioural Ecology Group Department of Systematic Zoology and Ecology ELTEEötvös Loránd University Budapest Hungary
- Ecology Research Group of the Hungarian Academy of Sciences Budapest Hungary
| | - László Zsolt Garamszegi
- Institute of Ecology and Botany Centre for Ecological Research Vácrátót Hungary
- MTA‐ELTE Theoretical Biology and Evolutionary Ecology Research Group Department of Plant Systematics, Ecology and Theoretical Biology ELTEEötvös Loránd University Budapest Hungary
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141
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Adamo M, Chialva M, Calevo J, Bertoni F, Dixon K, Mammola S. Plant scientists' research attention is skewed towards colourful, conspicuous and broadly distributed flowers. NATURE PLANTS 2021; 7:574-578. [PMID: 33972712 DOI: 10.1038/s41477-021-00912-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 04/01/2021] [Indexed: 06/12/2023]
Abstract
Scientists' research interests are often skewed toward charismatic organisms, but quantifying research biases is challenging. By combining bibliometric data with trait-based approaches and using a well-studied alpine flora as a case study, we demonstrate that morphological and colour traits, as well as range size, have significantly more impact on species choice for wild flowering plants than traits related to ecology and rarity. These biases should be taken into account to inform more objective plant conservation efforts.
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Affiliation(s)
- Martino Adamo
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy.
| | - Matteo Chialva
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Jacopo Calevo
- Department of Biology, University of Napoli Federico II, Napoli, Italy
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia
| | - Filippo Bertoni
- Humanities of Nature, Museum für Naturkunde, Berlin, Germany
| | - Kingsley Dixon
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia
| | - Stefano Mammola
- Molecular Ecology Group, Water Research Institute (IRSA), National Research Council (CNR), Verbania Pallanza, Italy
- Laboratory for Integrative Biodiversity Research, Finnish Museum of Natural History (LUOMUS), University of Helsink, Helsinki, Finland
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142
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Holding ML, Strickland JL, Rautsaw RM, Hofmann EP, Mason AJ, Hogan MP, Nystrom GS, Ellsworth SA, Colston TJ, Borja M, Castañeda-Gaytán G, Grünwald CI, Jones JM, Freitas-de-Sousa LA, Viala VL, Margres MJ, Hingst-Zaher E, Junqueira-de-Azevedo ILM, Moura-da-Silva AM, Grazziotin FG, Gibbs HL, Rokyta DR, Parkinson CL. Phylogenetically diverse diets favor more complex venoms in North American pitvipers. Proc Natl Acad Sci U S A 2021; 118:e2015579118. [PMID: 33875585 PMCID: PMC8092465 DOI: 10.1073/pnas.2015579118] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
The role of natural selection in the evolution of trait complexity can be characterized by testing hypothesized links between complex forms and their functions across species. Predatory venoms are composed of multiple proteins that collectively function to incapacitate prey. Venom complexity fluctuates over evolutionary timescales, with apparent increases and decreases in complexity, and yet the causes of this variation are unclear. We tested alternative hypotheses linking venom complexity and ecological sources of selection from diet in the largest clade of front-fanged venomous snakes in North America: the rattlesnakes, copperheads, cantils, and cottonmouths. We generated independent transcriptomic and proteomic measures of venom complexity and collated several natural history studies to quantify dietary variation. We then constructed genome-scale phylogenies for these snakes for comparative analyses. Strikingly, prey phylogenetic diversity was more strongly correlated to venom complexity than was overall prey species diversity, specifically implicating prey species' divergence, rather than the number of lineages alone, in the evolution of complexity. Prey phylogenetic diversity further predicted transcriptomic complexity of three of the four largest gene families in viper venom, showing that complexity evolution is a concerted response among many independent gene families. We suggest that the phylogenetic diversity of prey measures functionally relevant divergence in the targets of venom, a claim supported by sequence diversity in the coagulation cascade targets of venom. Our results support the general concept that the diversity of species in an ecological community is more important than their overall number in determining evolutionary patterns in predator trait complexity.
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Affiliation(s)
- Matthew L Holding
- Department of Biological Sciences, Clemson University, Clemson, SC 29634;
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Jason L Strickland
- Department of Biological Sciences, Clemson University, Clemson, SC 29634
| | - Rhett M Rautsaw
- Department of Biological Sciences, Clemson University, Clemson, SC 29634
| | - Erich P Hofmann
- Department of Biological Sciences, Clemson University, Clemson, SC 29634
| | - Andrew J Mason
- Department of Biological Sciences, Clemson University, Clemson, SC 29634
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH 43210
| | - Michael P Hogan
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Gunnar S Nystrom
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Schyler A Ellsworth
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Timothy J Colston
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Miguel Borja
- Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, C.P. 35010 Gómez Palacio, Dgo., Mexico
| | - Gamaliel Castañeda-Gaytán
- Facultad de Ciencias Biológicas, Universidad Juárez del Estado de Durango, C.P. 35010 Gómez Palacio, Dgo., Mexico
| | | | - Jason M Jones
- HERP.MX A.C., Villa del Álvarez, Colima 28973, Mexico
| | | | - Vincent Louis Viala
- Laboratório de Toxinologia Aplicada, Instituto Butantan, São Paulo 05503-900, Brazil
- Center of Toxins, Immune-Response and Cell Signaling, São Paulo 05503-900, Brazil
| | - Mark J Margres
- Department of Biological Sciences, Clemson University, Clemson, SC 29634
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138
| | | | - Inácio L M Junqueira-de-Azevedo
- Laboratório de Toxinologia Aplicada, Instituto Butantan, São Paulo 05503-900, Brazil
- Center of Toxins, Immune-Response and Cell Signaling, São Paulo 05503-900, Brazil
| | - Ana M Moura-da-Silva
- Laboratório de Imunopatologia, Instituto Butantan, São Paulo 05503-900, Brazil
- Instituto de Pesquisa Clínica Carlos Borborema, Fundação de Medicina Tropical Doutor Heitor Vieira Dourado, Manaus 69040, Brazil
| | - Felipe G Grazziotin
- Laboratório de Coleções Zoológicas, Instituto Butantan, São Paulo 05503-900, Brazil
| | - H Lisle Gibbs
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH 43210
| | - Darin R Rokyta
- Department of Biological Science, Florida State University, Tallahassee, FL 32306
| | - Christopher L Parkinson
- Department of Biological Sciences, Clemson University, Clemson, SC 29634;
- Department of Forestry and Environmental Conservation, Clemson University, Clemson, SC 29634
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143
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Prager CM, Jing X, Henning JA, Read QD, Meidl P, Lavorel S, Sanders NJ, Sundqvist M, Wardle DA, Classen AT. Climate and multiple dimensions of plant diversity regulate ecosystem carbon exchange along an elevational gradient. Ecosphere 2021. [DOI: 10.1002/ecs2.3472] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Case M. Prager
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan48109USA
- Center for Macroecology, Evolution, and Climate Natural History Museum of Denmark Copenhagen Denmark
| | - Xin Jing
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan48109USA
- Department of Earth and Environmental Sciences KU Leuven Celestijnenlaan 200E Leuven3001Belgium
- Gund Institute for Environment University of Vermont Burlington Vermont USA
| | - Jeremiah A. Henning
- Department of Biology University of South Alabama 5871 USA Drive N Mobile Alabama USA
- Rocky Mountain Biological Laboratory Crested ButteColorado USA
| | - Quentin D. Read
- Rocky Mountain Biological Laboratory Crested ButteColorado USA
- National Socio‐Environmental Synthesis Center 1 Park Place Annapolis Maryland USA
| | - Peter Meidl
- Rocky Mountain Biological Laboratory Crested ButteColorado USA
| | - Sandra Lavorel
- Laboratoire d’Ecologie Alpine CNRS – Université Grenoble Alpes – Université Savoie Mont Blanc Grenoble38000France
| | - Nathan J. Sanders
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan48109USA
- Center for Macroecology, Evolution, and Climate Natural History Museum of Denmark Copenhagen Denmark
- Gund Institute for Environment University of Vermont Burlington Vermont USA
- Rocky Mountain Biological Laboratory Crested ButteColorado USA
| | - Maja Sundqvist
- Center for Macroecology, Evolution, and Climate Natural History Museum of Denmark Copenhagen Denmark
- Department of Earth Sciences University of Gothenburg Gothenburg Sweden
| | - David A. Wardle
- Asian School of the Environment Nanyang Technological University Singapore
| | - Aimee T. Classen
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan48109USA
- Center for Macroecology, Evolution, and Climate Natural History Museum of Denmark Copenhagen Denmark
- Gund Institute for Environment University of Vermont Burlington Vermont USA
- Rocky Mountain Biological Laboratory Crested ButteColorado USA
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144
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Wheeler MM, Collins SL, Grimm NB, Cook EM, Clark C, Sponseller RA, Hall SJ. Water and nitrogen shape winter annual plant diversity and community composition in near‐urban Sonoran Desert preserves. ECOL MONOGR 2021; 91:1-19. [DOI: 10.1002/ecm.1450] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Megan M. Wheeler
- School of Life Sciences Arizona State University P.O. Box 874501 Tempe Arizona 85287‐4501 USA
| | - Scott L. Collins
- Department of Biology University of New Mexico 1 University of New Mexico MSC03 2020 Albuquerque New Mexico 87131‐0001 USA
| | - Nancy B. Grimm
- School of Life Sciences Arizona State University P.O. Box 874501 Tempe Arizona 85287‐4501 USA
| | - Elizabeth M. Cook
- Department of Environmental Science Barnard College 3009 Broadway New York City New York 10027 USA
| | - Christopher Clark
- U.S. Environmental Protection Agency Office of Research and Development 1200 Pennsylvania Avenue Washington D.C. 20004 USA
| | - Ryan A. Sponseller
- Department of Ecology and Environmental Sciences Umeå University SE‐ 901 87 Umeå Sweden
| | - Sharon J. Hall
- School of Life Sciences Arizona State University P.O. Box 874501 Tempe Arizona 85287‐4501 USA
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145
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Nascimento ELDL, Maia LC, Cáceres MEDS, Lücking R. Phylogenetic structure of lichen metacommunities in Amazonian and Northeast Brazil. Ecol Res 2021. [DOI: 10.1111/1440-1703.12206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
| | - Leonor Costa Maia
- Center of Biosciences, Department of Mycology Federal University of Pernambuco Recife Pernambuco Brazil
| | | | - Robert Lücking
- Botanic Garden and Botanical Museum Freie Universität Berlin Berlin Germany
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146
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Fecchio A, Lima MR, Bell JA, Schunck F, Corrêa AH, Beco R, Jahn AE, Fontana CS, da Silva TW, Repenning M, Braga ÉM, Garcia JE, Lugarini C, Silva JCR, Andrade LHM, Dispoto JH, Dos Anjos CC, Weckstein JD, Kirchgatter K, Ellis VA, Ricklefs RE, De La Torre GM. Loss of forest cover and host functional diversity increases prevalence of avian malaria parasites in the Atlantic Forest. Int J Parasitol 2021; 51:719-728. [PMID: 33722680 DOI: 10.1016/j.ijpara.2021.01.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 01/07/2021] [Accepted: 01/11/2021] [Indexed: 12/25/2022]
Abstract
Host phylogenetic relatedness and ecological similarity are thought to contribute to parasite community assembly and infection rates. However, recent landscape level anthropogenic changes may disrupt host-parasite systems by impacting functional and phylogenetic diversity of host communities. We examined whether changes in host functional and phylogenetic diversity, forest cover, and minimum temperature influence the prevalence, diversity, and distributions of avian haemosporidian parasites (genera Haemoproteus and Plasmodium) across 18 avian communities in the Atlantic Forest. To explore spatial patterns in avian haemosporidian prevalence and taxonomic and phylogenetic diversity, we surveyed 2241 individuals belonging to 233 avian species across a deforestation gradient. Mean prevalence and parasite diversity varied considerably across avian communities and parasites responded differently to host attributes and anthropogenic changes. Avian malaria prevalence (termed herein as an infection caused by Plasmodium parasites) was higher in deforested sites, and both Plasmodium prevalence and taxonomic diversity were negatively related to host functional diversity. Increased diversity of avian hosts increased local taxonomic diversity of Plasmodium lineages but decreased phylogenetic diversity of this parasite genus. Temperature and host phylogenetic diversity did not influence prevalence and diversity of haemosporidian parasites. Variation in the diversity of avian host traits that promote parasite encounter and vector exposure (host functional diversity) partially explained the variation in avian malaria prevalence and diversity. Recent anthropogenic landscape transformation (reduced proportion of native forest cover) had a major influence on avian malaria occurrence across the Atlantic Forest. This suggests that, for Plasmodium, host phylogenetic diversity was not a biotic filter to parasite transmission as prevalence was largely explained by host ecological attributes and recent anthropogenic factors. Our results demonstrate that, similar to human malaria and other vector-transmitted pathogens, prevalence of avian malaria parasites will likely increase with deforestation.
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Affiliation(s)
- Alan Fecchio
- Programa de Pós-graduação em Ecologia e Conservação da Biodiversidade, Universidade Federal de Mato Grosso, Cuiabá, MT 78060900, Brazil.
| | - Marcos R Lima
- Department of Animal and Plant Biology, State University of Londrina, Londrina, PR 86051-970, Brazil
| | - Jeffrey A Bell
- Department of Biology, University of North Dakota, Grand Forks, ND 58202, USA
| | - Fabio Schunck
- Brazilian Committee for Ornithological Records - CBRO, São Paulo, SP, Brazil
| | - Aline H Corrêa
- Instituto de Biociências, Universidade de São Paulo, São Paulo, SP 05508-900, Brazil
| | - Renata Beco
- Instituto de Biociências, Universidade de São Paulo, São Paulo, SP 05508-900, Brazil
| | - Alex E Jahn
- Environmental Resilience Institute, Indiana University, Bloomington, IN 47408, USA
| | - Carla S Fontana
- Laboratório de Ornitologia, Museu de Ciências e Tecnologia, Programa de Pós-graduação em Ecologia e Conservação da Biodiversidade, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, RS 90619-900, Brazil
| | - Thaiane W da Silva
- Laboratório de Ornitologia, Museu de Ciências e Tecnologia, Programa de Pós-graduação em Ecologia e Conservação da Biodiversidade, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, RS 90619-900, Brazil
| | - Márcio Repenning
- Laboratório de Ornitologia, Museu de Ciências e Tecnologia, Programa de Pós-graduação em Ecologia e Conservação da Biodiversidade, Pontifícia Universidade Católica do Rio Grande do Sul, Porto Alegre, RS 90619-900, Brazil; Laboratório de Aves Aquáticas e Tartarugas Marinhas, Universidade Federal do Rio Grande. Campus Carreiros, Rio Grande, RS 96203-900, Brazil
| | - Érika M Braga
- Departamento de Parasitologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG 31270-901, Brazil
| | - José E Garcia
- Universidade Federal de Pernambuco, Centro Acadêmico de Vitória, Vitoria de Santo Antao, PE 55608-680, Brazil
| | - Camile Lugarini
- Centro Nacional de Pesquisa e Conservação de Aves Silvestres, Instituto Chico Mendes de Conservação da Biodiversidade, Florianópolis, SC, Brazil; Laboratório de Saúde Única, Epidemiologia e Geoprocessamento, Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Recife, PE 52061-030, Brazil
| | - Jean C R Silva
- Laboratório de Saúde Única, Epidemiologia e Geoprocessamento, Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Recife, PE 52061-030, Brazil
| | - Leontina H M Andrade
- Laboratório de Saúde Única, Epidemiologia e Geoprocessamento, Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Recife, PE 52061-030, Brazil
| | - Janice H Dispoto
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA 19103, USA
| | - Carolina C Dos Anjos
- Instituto de Medicina Tropical, Faculdade de Medicina, Universidade de São Paulo, São Paulo, SP 05403-000, Brazil
| | - Jason D Weckstein
- Department of Ornithology, Academy of Natural Sciences of Drexel University, Philadelphia, PA 19103, USA; Department of Biodiversity, Earth, and Environmental Sciences, Drexel University, Philadelphia, PA 19103, USA
| | - Karin Kirchgatter
- Instituto de Medicina Tropical, Faculdade de Medicina, Universidade de São Paulo, São Paulo, SP 05403-000, Brazil; Laboratório de Bioquímica e Biologia Molecular, Superintendência de Controle de Endemias, São Paulo, SP 01027-000, Brazil
| | - Vincenzo A Ellis
- Department of Entomology and Wildlife Ecology, University of Delaware, Newark, DE, USA
| | - Robert E Ricklefs
- Department of Biology, University of Missouri-St. Louis, St. Louis, MO 63121, USA
| | - Gabriel M De La Torre
- Programa de Pós-graduação em Ecologia e Conservação, Universidade Federal do Paraná, Curitiba, PR 80210-170, Brazil
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147
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Bonaccorsi A, Chiarello F, Fantoni G. SSH researchers make an impact differently. Looking at public research from the perspective of users. RESEARCH EVALUATION 2021. [DOI: 10.1093/reseval/rvab008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Abstract
With the rise of the impact assessment revolution, governments and public opinion have started to ask researchers to give evidence of their impact outside the traditional audiences, i.e. students and researchers. There is a mismatch between the request to demonstrate the impact and the current methodologies for impact assessment. This mismatch is particularly worrisome for the research in Social Sciences and Humanities. This paper gives a contribution by examining systematically a key element of impact, i.e. the social groups that are directly or indirectly affected by the results of research. We use a Text mining approach applied to the Research Excellence Framework (REF) collection of 6,637 impact case studies in order to identify social groups mentioned by researchers. Differently from previous studies, we employ a lexicon of user groups that includes 76,857 entries, which saturates the semantic field, permits the identification of all users and opens the way to normalization. We then develop three new metrics measuring Frequency, Diversity and Specificity of user expressions. We find that Social Sciences and Humanities exhibit a distinctive structure with respect to frequency and specificity of users.
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Affiliation(s)
- Andrea Bonaccorsi
- DESTEC, University of Pisa, Largo Lucio Lazzarino 2, 56126 Pisa, Italy
| | - Filippo Chiarello
- DESTEC, University of Pisa, Largo Lucio Lazzarino 2, 56126 Pisa, Italy
| | - Gualtiero Fantoni
- DICI, University of Pisa, Largo Lucio Lazzarino 2, 56126 Pisa, Italy
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Weglarz KM, Saunders WC, Van Wagenen A, Pearse WD. Phylogenetic diversity efficiently and accurately prioritizes conservation of aquatic macroinvertebrate communities. Ecosphere 2021. [DOI: 10.1002/ecs2.3383] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Affiliation(s)
- Kathryn M. Weglarz
- Department of Biology & Ecology Center Utah State University 5305 Old Main Hill Logan Utah84322USA
| | - W. Carl Saunders
- PACFISH/INFISH Biological Opinion Effectiveness Monitoring Program USDA Forest Service 860 North 1200 East Logan Utah84321USA
| | - Andrew Van Wagenen
- PACFISH/INFISH Biological Opinion Effectiveness Monitoring Program USDA Forest Service 860 North 1200 East Logan Utah84321USA
| | - William D. Pearse
- Department of Biology & Ecology Center Utah State University 5305 Old Main Hill Logan Utah84322USA
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149
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Davies TJ. Ecophylogenetics redux. Ecol Lett 2021; 24:1073-1088. [PMID: 33565697 DOI: 10.1111/ele.13682] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 12/15/2020] [Accepted: 12/20/2020] [Indexed: 12/24/2022]
Abstract
Species' evolutionary histories shape their present-day ecologies, but the integration of phylogenetic approaches in ecology has had a contentious history. The field of ecophylogenetics promised to reveal the process of community assembly from simple indices of phylogenetic pairwise distances - communities shaped by environmental filtering were composed of closely related species, whereas communities shaped by competition were composed of less closely related species. However, the mapping of ecology onto phylogeny proved to be not so straightforward, and the field remains mired in controversy. Nonetheless, ecophylogenetic methods provided important advances across ecology. For example the phylogenetic distances between species is a strong predictor of pest and pathogen sharing, and can thus inform models of species invasion, coexistence and the disease dilution/amplification effect of biodiversity. The phylogenetic structure of communities may also provide information on niche space occupancy, helping interpret patterns of facilitation, succession and ecosystem functioning - with relevance for conservation and restoration - and the dynamics among species within foodwebs and metacommunities. I suggest leveraging advances in our understanding of the process of evolution on phylogenetic trees would allow the field to progress further, while maintaining the essence of the original vision that proved so seductive.
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Affiliation(s)
- T Jonathan Davies
- Departments of Botany, Forest & Conservation Sciences, Biodiversity Research Centre, University of British Columbia, 2212 Main Mall, Vancouver, BC, V6T 1Z4, Canada.,African Centre for DNA Barcoding, University of Johannesburg, Johannesburg, 2092, South Africa
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150
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Deák B, Rádai Z, Bátori Z, Kelemen A, Lukács K, Kiss R, Maák IE, Valkó O. Ancient Burial Mounds Provide Safe Havens for Grassland Specialist Plants in Transformed Landscapes—A Trait-Based Analysis. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.619812] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Due to the intensified land use in transformed landscapes, grassland biodiversity is often restricted to habitat fragments inadequate for arable use or for urban development. In continental parts of Eurasia, the ~600,000 ancient burial mounds (called “kurgans”) built by nomadic tribes of the steppes are amongst the most widespread landmarks providing refuge for dry grassland species. In our study by using plant functional groups and functional traits, we aimed at gaining insight into the ecological and evolutionary processes shaping the structure and the composition of assemblages of grassland specialist plant species on kurgans embedded in the agricultural landscapes of East-Hungary. As a comparison, we also studied roadside verges and pristine extensive grasslands in the same region. We found that despite their small size, due to the lack of human disturbances and high microhabitat diversity kurgans can maintain a high species richness and percentage cover of specialists, especially when compared to verges. We revealed that assemblages of specialist plants on kurgans are characterized by traits typical to terrestrial habitat islands such as self-compatibility, large seed mass and tall stature. Kurgans and extensive grasslands were characterized by higher functional diversity (both at the level of single traits and multi-trait based functional dispersion) which is probably due to the higher level of environmental heterogeneity compared to the homogeneous environment in verges.
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