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Schilling S, Pan S, Kennedy A, Melzer R. MADS-box genes and crop domestication: the jack of all traits. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:1447-1469. [PMID: 29474735 DOI: 10.1093/jxb/erx479] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Accepted: 01/10/2018] [Indexed: 05/25/2023]
Abstract
MADS-box genes are key regulators of virtually every aspect of plant reproductive development. They play especially prominent roles in flowering time control, inflorescence architecture, floral organ identity determination, and seed development. The developmental and evolutionary importance of MADS-box genes is widely acknowledged. However, their role during flowering plant domestication is less well recognized. Here, we provide an overview illustrating that MADS-box genes have been important targets of selection during crop domestication and improvement. Numerous examples from a diversity of crop plants show that various developmental processes have been shaped by allelic variations in MADS-box genes. We propose that new genomic and genome editing resources provide an excellent starting point for further harnessing the potential of MADS-box genes to improve a variety of reproductive traits in crops. We also suggest that the biophysics of MADS-domain protein-protein and protein-DNA interactions, which is becoming increasingly well characterized, makes them especially suited to exploit coding sequence variations for targeted breeding approaches.
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Affiliation(s)
- Susanne Schilling
- School of Biology and Environmental Science, University College Dublin, Irel
| | - Sirui Pan
- School of Biology and Environmental Science, University College Dublin, Irel
| | - Alice Kennedy
- School of Biology and Environmental Science, University College Dublin, Irel
| | - Rainer Melzer
- School of Biology and Environmental Science, University College Dublin, Irel
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202
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Zhang Z, Zhuo X, Zhao K, Zheng T, Han Y, Yuan C, Zhang Q. Transcriptome Profiles Reveal the Crucial Roles of Hormone and Sugar in the Bud Dormancy of Prunus mume. Sci Rep 2018; 8:5090. [PMID: 29572446 PMCID: PMC5865110 DOI: 10.1038/s41598-018-23108-9] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 03/01/2018] [Indexed: 01/09/2023] Open
Abstract
Bud dormancy transition is a vital developmental process for perennial plant survival. The process is precisely regulated by diverse endogenous genetic factors and environmental cues, but the mechanisms are not yet fully understood. Prunus mume is an ideal crop for bud dormancy analysis because of its early spring-flowering characteristics and small sequenced genome. Here, we analyzed the transcriptome profiles at the three endodormancy stages and natural flush stage using RNA sequencing combined with phytohormone and sugar content measurements. Significant alterations in hormone contents and carbohydrate metabolism have been observed, and α-amylases, Glucan Hydrolase Family 17 and diphosphate-glycosyltransferase family might play crucial roles in the interactions between hormones and sugars. The following hypothetical model for understanding the molecular mechanism of bud dormancy in Prunus mume is proposed: low temperatures exposure induces the significant up-regulation of eight C-repeat binding factor genes, which directly promotes all six dormancy-associated MADS-box genes, resulting in dormancy establishment. The prolonged cold and/or subsequently increasing temperature then decreases the expression levels of these two gene families, which alleviates the inhibition of FLOWERING LOCUS T and reopens the growth-promoting pathway, resulting in dormancy release and the initiation of the bud break process.
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Affiliation(s)
- Zhiyong Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - XiaoKang Zhuo
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Kai Zhao
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Tangchun Zheng
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Yu Han
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Cunquan Yuan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
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203
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Yue C, Cao H, Hao X, Zeng J, Qian W, Guo Y, Ye N, Yang Y, Wang X. Differential expression of gibberellin- and abscisic acid-related genes implies their roles in the bud activity-dormancy transition of tea plants. PLANT CELL REPORTS 2018; 37:425-441. [PMID: 29214380 DOI: 10.1007/s00299-017-2238-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Accepted: 11/20/2017] [Indexed: 05/20/2023]
Abstract
Thirty genes involved in GA and ABA metabolism and signalling were identified, and the expression profiles indicated that they play crucial roles in the bud activity-dormancy transition in tea plants. Gibberellin (GA) and abscisic acid (ABA) are fundamental phytohormones that extensively regulate plant growth and development, especially bud dormancy and sprouting transition in perennial plants. However, there is little information on GA- and ABA-related genes and their expression profiles during the activity-dormancy transition in tea plants. In the present study, 30 genes involved in the metabolism and signalling pathways of GA and ABA were first identified, and their expression patterns in different tissues were assessed. Further evaluation of the expression patterns of selected genes in response to GA3 and ABA application showed that CsGA3ox, CsGA20ox, CsGA2ox, CsZEP and CsNCED transcripts were differentially expressed after exogenous treatment. The expression profiles of the studied genes during winter dormancy and spring sprouting were investigated, and somewhat diverse expression patterns were found for GA- and ABA-related genes. This diversity was associated with the bud activity-dormancy cycle of tea plants. These results indicate that the genes involved in the metabolism and signalling of GA and ABA are important for regulating the bud activity-dormancy transition in tea plants.
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Affiliation(s)
- Chuan Yue
- College of Horticulture, Key Laboratory of Tea Science in Universities of Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China
| | - Hongli Cao
- College of Horticulture, Key Laboratory of Tea Science in Universities of Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China
| | - Xinyuan Hao
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China
| | - Jianming Zeng
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China
| | - Wenjun Qian
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China
| | - Yuqiong Guo
- College of Horticulture, Key Laboratory of Tea Science in Universities of Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Naixing Ye
- College of Horticulture, Key Laboratory of Tea Science in Universities of Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Yajun Yang
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China.
| | - Xinchao Wang
- Tea Research Institute of the Chinese Academy of Agricultural Sciences, National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture, Hangzhou, 310008, China.
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204
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Chen Z, Rao P, Yang X, Su X, Zhao T, Gao K, Yang X, An X. A Global View of Transcriptome Dynamics During Male Floral Bud Development in Populus tomentosa. Sci Rep 2018; 8:722. [PMID: 29335419 PMCID: PMC5768756 DOI: 10.1038/s41598-017-18084-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Accepted: 12/05/2017] [Indexed: 02/01/2023] Open
Abstract
To obtain a comprehensive overview of the dynamic transcriptome during male floral bud development in Populus tomentosa, high-throughput RNA-seq was conducted during eight flowering-related stages. Among the 109,212 de novo assembled unigenes, 6,959 were differentially expressed during the eight stages. The overrepresented classed of genes identified by Gene Ontology (GO) enrichment included 'response to environmental stimuli' and 'plant-type spore development'. One-third of the differentially expressed genes were transcription factors (TFs). Several genes and gene families were analyzed in depth, including MADS-box TFs, Squamosa promoter binding protein-like family, receptor-like kinases, FLOWERING LOCUS T/TERMINAL-FLOWER-LIKE 1 family, key genes involved in anther and tapetum development, as well as LEAFY, WUSCHEL and CONSTANS. The results provided new insights into the roles of these and other well known gene families during the annual flowering cycle. To explore the mechanisms regulating poplar flowering, a weighted gene co-expression network was constructed using 98 floral-related genes involved in flower meristem identity and flower development. Many modules of co-expressed genes and hub genes were identified, such as APETALA1 and HUA1. This work provides many new insights on the annual flowering cycle in a perennial plant, and a major new resource for plant biology and biotechnology.
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Affiliation(s)
- Zhong Chen
- Key Laboratory of Silviculture and Conservation of the Ministry of Education, College of Forestry, Beijing Forestry University, Beijing, 100083, China.
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Pian Rao
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xiaoyu Yang
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xiaoxing Su
- Berry Genomics Co., Ltd, Beijing, 100015, China
| | - Tianyun Zhao
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Kai Gao
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xiong Yang
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Xinmin An
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR, 97331, USA.
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205
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Falavigna VDS, Guitton B, Costes E, Andrés F. I Want to (Bud) Break Free: The Potential Role of DAM and SVP-Like Genes in Regulating Dormancy Cycle in Temperate Fruit Trees. FRONTIERS IN PLANT SCIENCE 2018; 9:1990. [PMID: 30687377 PMCID: PMC6335348 DOI: 10.3389/fpls.2018.01990] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2018] [Accepted: 12/20/2018] [Indexed: 05/18/2023]
Abstract
Bud dormancy is an adaptive process that allows trees to survive the hard environmental conditions that they experience during the winter of temperate climates. Dormancy is characterized by the reduction in meristematic activity and the absence of visible growth. A prolonged exposure to cold temperatures is required to allow the bud resuming growth in response to warm temperatures. In fruit tree species, the dormancy cycle is believed to be regulated by a group of genes encoding MADS-box transcription factors. These genes are called DORMANCY-ASSOCIATED MADS-BOX (DAM) and are phylogenetically related to the Arabidopsis thaliana floral regulators SHORT VEGETATIVE PHASE (SVP) and AGAMOUS-LIKE 24. The interest in DAM and other orthologs of SVP (SVP-like) genes has notably increased due to the publication of several reports suggesting their role in the control of bud dormancy in numerous fruit species, including apple, pear, peach, Japanese apricot, and kiwifruit among others. In this review, we briefly describe the physiological bases of the dormancy cycle and how it is genetically regulated, with a particular emphasis on DAM and SVP-like genes. We also provide a detailed report of the most recent advances about the transcriptional regulation of these genes by seasonal cues, epigenetics and plant hormones. From this information, we propose a tentative classification of DAM and SVP-like genes based on their seasonal pattern of expression. Furthermore, we discuss the potential biological role of DAM and SVP-like genes in bud dormancy in antagonizing the function of FLOWERING LOCUS T-like genes. Finally, we draw a global picture of the possible role of DAM and SVP-like genes in the bud dormancy cycle and propose a model that integrates these genes in a molecular network of dormancy cycle regulation in temperate fruit trees.
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206
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Lloret A, Badenes ML, Ríos G. Modulation of Dormancy and Growth Responses in Reproductive Buds of Temperate Trees. FRONTIERS IN PLANT SCIENCE 2018; 9:1368. [PMID: 30271422 PMCID: PMC6146825 DOI: 10.3389/fpls.2018.01368] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Accepted: 08/29/2018] [Indexed: 05/20/2023]
Abstract
During autumn perennial trees cease growth and form structures called buds in order to protect meristems from the unfavorable environmental conditions, including low temperature and desiccation. In addition to increased tolerance to these abiotic stresses, reproductive buds modulate developmental programs leading to dormancy induction to avoid premature growth resumption, and flowering pathways. Stress tolerance, dormancy, and flowering processes are thus physically and temporarily restricted to a bud, and consequently forced to interact at the regulatory level. We review recent genomic, genetic, and molecular contributions to the knowledge of these three processes in trees, highlighting the role of epigenetic modifications, phytohormones, and common regulatory factors. Finally, we emphasize the utility of transcriptomic approaches for the identification of key structural and regulatory genes involved in bud processes, illustrated with our own experience using peach as a model.
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207
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Balao F, Paun O, Alonso C. Uncovering the contribution of epigenetics to plant phenotypic variation in Mediterranean ecosystems. PLANT BIOLOGY (STUTTGART, GERMANY) 2018. [PMID: 28637098 DOI: 10.1111/plb.12594] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Epigenetic signals can affect plant phenotype and fitness and be stably inherited across multiple generations. Epigenetic regulation plays a key role in the mechanisms of plant response to the environment, without altering DNA sequence. As plants cannot adapt behaviourally or migrate instantly, such dynamic epigenetic responses may be particularly crucial for survival of plants within changing and challenging environments, such as the Mediterranean-Type Ecosystems (MTEs). These ecosystems suffer recurrent stressful events (warm and dry summers with associated fire regimes) that have selected for plants with similar phenotypic complex traits, resulting in similar vegetation growth forms. However, the potential role of epigenetics in plant adaptation to recurrent stressful environments such as the MTEs has generally been ignored. To understand the full spectrum of adaptive processes in such contexts, it is imperative to prompt study of the causes and consequences of epigenetic variation in natural populations. With this purpose, we review here current knowledge on epigenetic variation in natural populations and the genetic and epigenetic basis of some key traits for plants in the MTEs, namely those traits involved in adaptation to drought, fire and oligotrophic soils. We conclude there is still much to be learned about 'plant epigenetics in the wild' and, thus, we propose future research steps in the study of natural epigenetic variation of key traits in the MTEs at different scales.
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Affiliation(s)
- F Balao
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
| | - O Paun
- Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - C Alonso
- Estación Biológica de Doñana, CSIC, Sevilla, Spain
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208
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Peyhardi J, Caraglio Y, Costes E, Lauri PÉ, Trottier C, Guédon Y. Integrative models for joint analysis of shoot growth and branching patterns. THE NEW PHYTOLOGIST 2017; 216:1291-1304. [PMID: 28892159 DOI: 10.1111/nph.14742] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 07/09/2017] [Indexed: 06/07/2023]
Abstract
Plants exhibit dependences between shoot growth and branching that generate highly structured patterns. The characterization of the patterning mechanism is still an open issue because of the developmental processes involved with both succession of events (e.g. internode elongation, axillary shoot initiation and elongation) and complex dependences among neighbouring positions along the parent shoot. Statistical models called semi-Markov switching partitioned conditional generalized linear models were built on the basis of apple and pear tree datasets. In these models, the semi-Markov chain represents both the succession and lengths of branching zones, whereas the partitioned conditional generalized linear models represent the influence of parent shoot growth variables on axillary productions within each branching zone. Parent shoot growth variables were shown to influence specific developmental events. On this basis, the growth and branching patterns of two apple tree (Malus domestica) cultivars, as well as of pear trees (Pyrus spinosa) between two successive growing cycles, were compared. The proposed integrative statistical models were able to decipher the roles of successive developmental events in the growth and branching patterning mechanisms. These models could incorporate other parent shoot explanatory variables, such as the local curvature or the maximum growth rate of the leaf.
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Affiliation(s)
- Jean Peyhardi
- CIRAD, UMR AGAP and Inria, Virtual Plants, 34095, Montpellier, France
- Université de Montpellier, Institut Montpelliérain Alexander Grothendieck, 34095, Montpellier, France
| | | | | | | | - Catherine Trottier
- Université de Montpellier, Institut Montpelliérain Alexander Grothendieck, 34095, Montpellier, France
| | - Yann Guédon
- CIRAD, UMR AGAP and Inria, Virtual Plants, 34095, Montpellier, France
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209
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Shu Y, Li W, Zhao J, Zhang S, Xu H, Liu Y, Guo C. Transcriptome sequencing analysis of alfalfa reveals CBF genes potentially playing important roles in response to freezing stress. Genet Mol Biol 2017; 40:824-833. [PMID: 29111565 PMCID: PMC5738619 DOI: 10.1590/1678-4685-gmb-2017-0053] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Accepted: 06/23/2017] [Indexed: 12/31/2022] Open
Abstract
Alfalfa (Medicago sativa L.) is an important perennial forage, with high nutritional value, which is widely grown in the world. Because of low freezing tolerance, its distribution and production are threatened and limited by winter weather. To understand the complex regulation mechanisms of freezing tolerance in alfalfa, we performed transcriptome sequencing analysis under cold (4 °C) and freezing (-8 °C) stresses. More than 66 million reads were generated, and we identified 5767 transcripts differentially expressed in response to cold and/or freezing stresses. These results showed that these genes were mainly classified as response to stress, transcription regulation, hormone signaling pathway, antioxidant, nodule morphogenesis, etc., implying their important roles in response to cold and freezing stresses. Furthermore, nine CBF transcripts differentially expressed were homologous to CBF genes of Mt-FTQTL6 site, conferring freezing tolerance in M. truncatula, which indicated that a genetic mechanism controlling freezing tolerance was conservative between M. truncatula and M. sativa. In summary, this transcriptome dataset highlighted the gene regulation response to cold and/or freezing stresses in alfalfa, which provides a valuable resource for future identification and functional analysis of candidate genes in determining freezing tolerance.
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Affiliation(s)
- Yongjun Shu
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Wei Li
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Jinyue Zhao
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Sijia Zhang
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Hanyun Xu
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Ying Liu
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
| | - Changhong Guo
- College of Life Science and Technology, Harbin Normal University, Harbin Heilongjiang, China
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210
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Chuine I, Régnière J. Process-Based Models of Phenology for Plants and Animals. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2017. [DOI: 10.1146/annurev-ecolsys-110316-022706] [Citation(s) in RCA: 115] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Phenology is a key aspect of plant and animal life strategies that determines the ability to capture seasonally variable resources. It defines the season and duration of growth and reproduction and paces ecological interactions and ecosystem functions. Phenology models have become a key component of models in agronomy, forestry, ecology, and biogeosciences. Plant and animal process-based phenology models have taken different paths that have so far not crossed. Yet, they share many features because plant and animal annual cycles also share many characteristics, from their stepwise progression, including a resting period, to their dependence on similar environmental factors. We review the strengths and shortcomings of these models and the divergences in modeling approaches for plants and animals, which are mostly due to specificities of the questions they tackle. Finally, we discuss the most promising avenues and the challenges phenology modeling needs to address in the upcoming years.
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Affiliation(s)
- Isabelle Chuine
- Centre d'Ecologie Fonctionnelle et Evolutive, UMR 5175 Centre National de la Recherche Scientifique—Université de Montpellier—Université Paul-Valéry Montpellier—EPHE, 34293, Montpellier, France
| | - Jacques Régnière
- Natural Resources Canada, Canadian Forest Service, Québec, Québec, G1V 4C7 Canada
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211
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Conde D, Moreno-Cortés A, Dervinis C, Ramos-Sánchez JM, Kirst M, Perales M, González-Melendi P, Allona I. Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar. PLANT, CELL & ENVIRONMENT 2017; 40:2806-2819. [PMID: 28810288 DOI: 10.1111/pce.13056] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Revised: 07/26/2017] [Accepted: 08/11/2017] [Indexed: 05/21/2023]
Abstract
The transition from active growth to dormancy is critical for the survival of perennial plants. We identified a DEMETER-like (CsDML) cDNA from a winter-enriched cDNA subtractive library in chestnut (Castanea sativa Mill.), an economically and ecologically important species. Next, we characterized this DNA demethylase and its putative ortholog in the more experimentally tractable hybrid poplar (Populus tremula × alba), under the signals that trigger bud dormancy in trees. We performed phylogenetic and protein sequence analysis, gene expression profiling, and 5-methyl-cytosine methylation immunodetection studies to evaluate the role of CsDML and its homolog in poplar, PtaDML6. Transgenic hybrid poplars overexpressing CsDML were produced and analysed. Short days and cold temperatures induced CsDML and PtaDML6. Overexpression of CsDML accelerated short-day-induced bud formation, specifically from Stages 1 to 0. Buds acquired a red-brown coloration earlier than wild-type plants, alongside with the up-regulation of flavonoid biosynthesis enzymes and accumulation of flavonoids in the shoot apical meristem and bud scales. Our data show that the CsDML gene induces bud formation needed for the survival of the apical meristem under the harsh conditions of winter.
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Affiliation(s)
- Daniel Conde
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Alicia Moreno-Cortés
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Christopher Dervinis
- School of Forest Resources and Conservation, University of Florida, Gainesville, FL, 32611, USA
| | - José M Ramos-Sánchez
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Matias Kirst
- School of Forest Resources and Conservation, University of Florida, Gainesville, FL, 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL, 32611, USA
| | - Mariano Perales
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Pablo González-Melendi
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid (UPM), 28040, Madrid, Spain
| | - Isabel Allona
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid (UPM), 28040, Madrid, Spain
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Saito T, Wang S, Ohkawa K, Ohara H, Ikeura H, Ogawa Y, Kondo S. Lipid droplet-associated gene expression and chromatin remodelling in LIPASE 5'-upstream region from beginning- to mid-endodormant bud in 'Fuji' apple. PLANT MOLECULAR BIOLOGY 2017; 95:441-449. [PMID: 29019094 DOI: 10.1007/s11103-017-0662-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Accepted: 09/14/2017] [Indexed: 05/26/2023]
Abstract
We found that lipid accumulation in the meristem region and the expression of MdLIP2A, which appears to be regulated by chromatin remodeling, coincided with endodormancy induction in the 'Fuji' apple. In deciduous trees, including apples (Malus × domestica Borkh.), lipid accumulation in the meristem region towards endodormancy induction has been thought to be an important process for the acquisition of cold tolerance. In this study, we conducted histological staining of crude lipids in the meristem region of 'Fuji' apples and found that lipid accumulation coincided with endodormancy induction. Since a major component of lipid bodies (triacylglycerol) is esterified fatty acids, we analysed fatty acid-derived volatile compounds and genes encoding fatty acid-modifying enzymes (MdLOX1A and MdHPL2A); the reduction of lipid breakdown also coincided with endodormancy induction. We then characterised the expression patterns of lipid body-regulatory genes MdOLE1 and MdLIP2A during endodormancy induction and found that the expression of MdLIP2A correlated well with lipid accumulation towards endodormancy induction. Based on these results, we conducted chromatin remodelling studies and localized the cis-element in the 5'-upstream region of MdLIP2A to clarify its regulatory mechanism. Finally, we revealed that chromatin was concentrated - 764 to - 862 bp of the 5'-upstream region of MdLIP2A, which harbours the GARE [gibberellin responsive MYB transcription factor binding site] and CArG [MADS-box transcription factor binding site] motifs-meristem development-related protein-binding sites.
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Affiliation(s)
- Takanori Saito
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan
| | - Shanshan Wang
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan
| | - Katsuya Ohkawa
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan
| | - Hitoshi Ohara
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan
- Center for Environment, Health and Field Sciences, Chiba University, Kashiwa-no-ha, 277-0882, Japan
| | - Hiromi Ikeura
- Organization for the Strategic Coordination of Research and Intellectual Properties, Meiji University, Kawasaki, 214-8571, Japan
| | - Yukiharu Ogawa
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan
| | - Satoru Kondo
- Graduate School of Horticulture, Chiba University, Matsudo, 271-8510, Japan.
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213
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Vitra A, Lenz A, Vitasse Y. Frost hardening and dehardening potential in temperate trees from winter to budburst. THE NEW PHYTOLOGIST 2017; 216:113-123. [PMID: 28737248 DOI: 10.1111/nph.14698] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Accepted: 06/10/2017] [Indexed: 05/08/2023]
Abstract
We investigated how deciduous trees can adjust their freezing resistance in response to temperature during the progress of the ecodormancy phase, from midwinter to budburst. We regularly sampled twigs of four different temperate deciduous tree species from January to the leaf-out date. Using computer-controlled freezers and climate chambers, the freezing resistance of buds was measured directly after sampling and also after the application of artificial hardening and dehardening treatments, simulating cold and warm spells. The thermal time to budburst in forcing conditions (c. 20°C) was also quantified at each sampling as a proxy for dormancy depth. Earlier flushing species showed higher freezing resistance than late flushing species at either similar bud development stage or similar dormancy depth. Overall, freezing resistance and its hardening and dehardening potential dramatically decreased during the progress of ecodormancy and became almost nil during budburst. Our results suggest that extreme cold events in winter are not critical for trees, as freezing resistance can be largely enhanced during this period. By contrast, the timing of budburst is a critical component of tree fitness. Our results provide quantitative values of the freezing resistance dynamics during ecodormancy, particularly valuable in process-based species distribution models.
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Affiliation(s)
- Amarante Vitra
- Institute of Botany, University of Basel, 4056, Basel, Switzerland
- Research Unit Community Ecology, WSL Swiss Federal Institute for Forest, Snow and Landscape Research, Site Lausanne, Station 2, CH-1015, Lausanne, Switzerland
- Ecole Polytechnique Fédérale de Lausanne (EPFL), Laboratory of Ecological Systems (ECOS), School of Architecture, Civil and Environmental Engineering (ENAC), Station 2, CH-1015, Lausanne, Switzerland
| | - Armando Lenz
- Institute of Botany, University of Basel, 4056, Basel, Switzerland
| | - Yann Vitasse
- Institute of Botany, University of Basel, 4056, Basel, Switzerland
- WSL Swiss Federal Institute for Forest, Snow and Landscape Research, 2000, Neuchâtel, Switzerland
- Institute of Geography, University of Neuchâtel, 2000, Neuchâtel, Switzerland
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214
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Zohner CM, Renner SS. Innately shorter vegetation periods in North American species explain native–non-native phenological asymmetries. Nat Ecol Evol 2017; 1:1655-1660. [DOI: 10.1038/s41559-017-0307-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Accepted: 08/08/2017] [Indexed: 11/09/2022]
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215
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Maurya JP, Bhalerao RP. Photoperiod- and temperature-mediated control of growth cessation and dormancy in trees: a molecular perspective. ANNALS OF BOTANY 2017; 120:351-360. [PMID: 28605491 PMCID: PMC5591416 DOI: 10.1093/aob/mcx061] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Indexed: 05/03/2023]
Abstract
BACKGROUND How plants adapt their developmental patterns to regular seasonal changes is an important question in biology. The annual growth cycle in perennial long-lived trees is yet another example of how plants can adapt to seasonal changes. The two main signals that plants rely on to respond to seasonal changes are photoperiod and temperature, and these signals have critical roles in the temporal regulation of the annual growth cycle of trees. SCOPE This review presents the latest findings to provide insight into the molecular mechanisms that underlie how photoperiodic and temperature signals regulate seasonal growth in trees. CONCLUSION The results point to a high level of conservation in the signalling pathways that mediate photoperiodic control of seasonal growth in trees and flowering in annual plants such as arabidopsis. Furthermore, the data indicate that symplastic communication may mediate certain aspects of seasonal growth. Although considerable insight into the control of phenology in model plants such as poplar and spruce has been obtained, the future challenge is extending these studies to other, non-model trees.
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Affiliation(s)
- Jay P Maurya
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
| | - Rishikesh P Bhalerao
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
- For correspondence. E-mail
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216
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Sivadasan U, Randriamanana T, Chenhao C, Virjamo V, Nybakken L, Julkunen-Tiitto R. Effect of climate change on bud phenology of young aspen plants ( Populus tremula. L). Ecol Evol 2017; 7:7998-8007. [PMID: 29043051 PMCID: PMC5632631 DOI: 10.1002/ece3.3352] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Revised: 07/18/2017] [Accepted: 07/26/2017] [Indexed: 11/05/2022] Open
Abstract
Boreal tree species are excellent tools for studying tolerance to climate change. Bud phenology is a trait, which is highly sensitive to environmental fluctuations and thus useful for climate change investigations. However, experimental studies of bud phenology under simulated climate change outdoors are deficient. We conducted a multifactorial field experiment with single (T, UVA, UVB) and combined treatments (UVA+T, UVB+T) of elevated temperature (T, +2°C) and ultraviolet-B radiation (+30% UVB) in order to examine their impact on both male and female genotypes of aspen (Populus tremula L.). This study focuses on the effect of the treatments in years 2 and 3 after planting (2013, 2014) and follows how bud phenology is adapting in year 4 (2015), when the treatments were discontinued. Moreover, the effect of bud removal was recorded. We found that elevated temperature played a key role in delaying bud set and forcing bud break in intact individuals, as well as slightly delaying bud break in bud-removed individuals. UVB delayed the bud break in bud-removed males. In addition, both UVA and UVB interacted with temperature in year 3 and even in year 4, when the treatments were off, but only in male individuals. Axillary bud removal forced both bud break and bud set under combined treatments (UVA+T, UVB+T) and delayed both under individual treatments (T, UVB). In conclusion, male aspens were more responsive to the treatments than females and that effect of elevated temperature and UV radiation on bud set and bud break of aspen is not disappearing over 4-year study period.
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Affiliation(s)
- Unnikrishnan Sivadasan
- Natural Products Research Laboratories Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
| | - Tendry Randriamanana
- Natural Products Research Laboratories Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
| | - Cao Chenhao
- Natural Products Research Laboratories Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
| | - Virpi Virjamo
- Natural Products Research Laboratories Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
| | - Line Nybakken
- Faculty of Environmental Sciences and Natural Resource Management CERAD Norwegian University of Life Sciences Ås Norway
| | - Riitta Julkunen-Tiitto
- Natural Products Research Laboratories Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
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217
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Khalil-Ur-Rehman M, Wang W, Xu YS, Haider MS, Li CX, Tao JM. Comparative Study on Reagents Involved in Grape Bud Break and Their Effects on Different Metabolites and Related Gene Expression during Winter. FRONTIERS IN PLANT SCIENCE 2017; 8:1340. [PMID: 28824676 PMCID: PMC5543042 DOI: 10.3389/fpls.2017.01340] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2017] [Accepted: 07/18/2017] [Indexed: 05/30/2023]
Abstract
To elucidate promoting and inhibiting effects of hydrogen cynamide (HC) and abscisic acid (ABA) on quiescence release of grape buds, physiological and molecular approaches were used to explore the mechanisms of quiescence based on metabolic and gene expression analysis. Physiological and molecular mechanisms involved in bud quiescence of grape were studied before and after application of HC, ABA, and ABA-HC. The data showed that ABA inhibited proclamation of quiescence in grape buds and attenuated the influence of HC. Bud quiescence was promoted and regulated by HC and ABA pre-treatment on buds of grape cultivar "Shine Muscat" with 5% HC, 100 μM ABA and combination of ABA-HC (5% HC+100 μM ABA) during quiescence under forcing condition. Exogenous application of ABA elevated superoxide dismutase (SOD), peroxidase (POD) and ascorbate peroxidase (APX) related specific activities, while catalase (CAT) activity was increased during initial period of forcing and then decreased. The concentration of plant growth hormones including gibberellins (GA) and indole acetic acid increased by HC application but decreased the ABA contents under forcing condition. ABA increased the fructose content during quiescence under forcing condition while sucrose and total soluble sugars peaked in HC treated buds as compared to control. Genes related to ABA pathway, protein phosphatase 2C (PP2C family) were down regulated in the buds treated with HC, ABA and ABA-HC as compared to control while two genes related to GA pathway (GID1 family), out of which one gene showed down regulation during initial period of forcing while other gene was up regulated in response to HC and ABA-HC treatments as compared to control. Exogenous ABA application up regulated genes related to antioxidant enzymes as compared to control. The gene probable fructose-bisphosphate aldolase 1, chloroplastic-like, was up regulated in response to ABA treatment as compared to control. Analysis of metabolites and related gene expression pattern would provide a comprehensive view of quiescence after HC, ABA, and ABA-HC treatments in grape buds which may helpful for ultimate improvement in table grape production.
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218
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Tuan PA, Bai S, Saito T, Ito A, Moriguchi T. Dormancy-Associated MADS-Box (DAM) and the Abscisic Acid Pathway Regulate Pear Endodormancy Through a Feedback Mechanism. PLANT & CELL PHYSIOLOGY 2017; 58:1378-1390. [PMID: 28586469 DOI: 10.1093/pcp/pcx074] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 05/10/2017] [Indexed: 05/20/2023]
Abstract
In the pear 'Kosui' (Pyrus pyrifolia Nakai), the dormancy-associated MADS-box (PpDAM1 = PpMADS13-1) gene has been reported to play an essential role in bud endodormancy. Here, we found that PpDAM1 up-regulated expression of 9-cis-epoxycarotenoid dioxygenase (PpNCED3), which is a rate-limiting gene for ABA biosynthesis. Transient assays with a dual luciferase reporter system (LUC assay) and electrophoretic mobility shift assay (EMSA) showed that PpDAM1 activated PpNCED3 expression by binding to the CArG motif in the PpNCED3 promoter. PpNCED3 expression was increased toward endodormancy release in lateral flower buds of 'Kosui', which is consistent with the induced levels of ABA, its catabolism (ABA 8'-hydroxylase) and signaling genes (type 2C protein phosphatase genes and SNF1-related protein kinase 2 genes). In addition, we found that an ABA response element (ABRE)-binding transcription factor, PpAREB1, exhibiting high expression concomitant with endodormancy release, bound to three ABRE motifs in the promoter region of PpDAM1 and negatively regulated its activity. Taken together, our results suggested a feedback regulation between PpDAM1 and the ABA metabolism and signaling pathway during endodormancy of pear. This first evidence of an interaction between a DAM and ABA biosynthesis in vitro will provide further insights into bud endodormancy regulatory mechanisms of deciduous trees including pear.
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Affiliation(s)
- Pham Anh Tuan
- Institute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki 305-8605, Japan
| | - Songling Bai
- Institute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki 305-8605, Japan
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Takanori Saito
- Institute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki 305-8605, Japan
- Graduate School of Horticulture, Chiba University, Matsudo, Chiba 271-8510, Japan
| | - Akiko Ito
- Institute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki 305-8605, Japan
| | - Takaya Moriguchi
- Institute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki 305-8605, Japan
- Institute of Fruit Tree and Tea Science, NARO, Okitsu-Nakacho Shimizu, Shizuoka 424-0292, Japan
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219
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Footitt S, Ölçer‐Footitt H, Hambidge AJ, Finch‐Savage WE. A laboratory simulation of Arabidopsis seed dormancy cycling provides new insight into its regulation by clock genes and the dormancy-related genes DOG1, MFT, CIPK23 and PHYA. PLANT, CELL & ENVIRONMENT 2017; 40:1474-1486. [PMID: 28240777 PMCID: PMC5518234 DOI: 10.1111/pce.12940] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 02/17/2017] [Accepted: 02/19/2017] [Indexed: 05/19/2023]
Abstract
Environmental signals drive seed dormancy cycling in the soil to synchronize germination with the optimal time of year, a process essential for species' fitness and survival. Previous correlation of transcription profiles in exhumed seeds with annual environmental signals revealed the coordination of dormancy-regulating mechanisms with the soil environment. Here, we developed a rapid and robust laboratory dormancy cycling simulation. The utility of this simulation was tested in two ways: firstly, using mutants in known dormancy-related genes [DELAY OF GERMINATION 1 (DOG1), MOTHER OF FLOWERING TIME (MFT), CBL-INTERACTING PROTEIN KINASE 23 (CIPK23) and PHYTOCHROME A (PHYA)] and secondly, using further mutants, we test the hypothesis that components of the circadian clock are involved in coordination of the annual seed dormancy cycle. The rate of dormancy induction and relief differed in all lines tested. In the mutants, dog1-2 and mft2, dormancy induction was reduced but not absent. DOG1 is not absolutely required for dormancy. In cipk23 and phyA dormancy, induction was accelerated. Involvement of the clock in dormancy cycling was clear when mutants in the morning and evening loops of the clock were compared. Dormancy induction was faster when the morning loop was compromised and delayed when the evening loop was compromised.
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Affiliation(s)
- Steven Footitt
- School of Life Sciences, Wellesbourne CampusUniversity of WarwickWarwickWarwickshireCV35 9EFUK
| | - Hülya Ölçer‐Footitt
- Department of Biology, Faculty of Arts and Sciences, Evliya Celebi CampusDumlupınar UniversityTR‐43100KütahyaTurkey
| | - Angela J. Hambidge
- School of Life Sciences, Wellesbourne CampusUniversity of WarwickWarwickWarwickshireCV35 9EFUK
| | - William E. Finch‐Savage
- School of Life Sciences, Wellesbourne CampusUniversity of WarwickWarwickWarwickshireCV35 9EFUK
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220
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Matoušek J, Siglová K, Jakše J, Radišek S, Brass JRJ, Tsushima T, Guček T, Duraisamy GS, Sano T, Steger G. Propagation and some physiological effects of Citrus bark cracking viroid and Apple fruit crinkle viroid in multiple infected hop (Humulus lupulus L.). JOURNAL OF PLANT PHYSIOLOGY 2017; 213:166-177. [PMID: 28395198 DOI: 10.1016/j.jplph.2017.02.014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Revised: 02/28/2017] [Accepted: 02/28/2017] [Indexed: 06/07/2023]
Abstract
The hop metabolome important for the brewing industry and for medical purposes is endangered worldwide due to multiple viroid infections affecting hop physiology. Combinatorial biolistic hop inoculation with Citrus bark cracking viroid (CBCVd), Apple fruit crinkle viroid (AFCVd), Hop latent viroid, and Hop stunt viroid (HSVd) showed a low CBCVd compatibility with HSVd, while all other viroid combinations were highly compatible. Unlike to other viroids, single CBCVd propagation showed a significant excess of (-) over (+) strands in hop, tomato, and Nicotiana benthamiana, but not in citruses. Inoculation of hop with all viroids led to multiple infections with unstable viroid levels in individual plants in the pre- and post-dormancy periods, and to high plant mortality and morphological disorders. Hop isolates of CBCVd and AFCVd were highly stable, only minor quasispecies were detected. CBCVd caused a strong suppression of some crucial mRNAs related to the hop prenylflavonoid biosynthesis pathway, while AFCVd-caused effects were moderate. According to mRNA degradome analysis, this suppression was not caused by a direct viroid-specific small RNA-mediated degradation. CBCVd infection led to a strong induction of two hop transcription factors from WRKY family and to a disbalance of WRKY/WDR1 complexes important for activation of lupulin genes.
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Affiliation(s)
- J Matoušek
- Biology Centre ASCR v.v.i, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 370 05, Czech Republic
| | - K Siglová
- Biology Centre ASCR v.v.i, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 370 05, Czech Republic; University of South Bohemia, Faculty of Science, Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - J Jakše
- University of Ljubljana, Biotechnical Faculty, Department of Agronomy, Jamnikarjeva 101, SI-1000 Ljubljana, Slovenia
| | - S Radišek
- Slovenian Institute of Hop Research and Brewing, Cesta Žalskega tabora 2, SI-3310 Žalec, Slovenia
| | - Joseph R J Brass
- Institute of Physical Biology, Heinrich-Heine-Universität Düsseldorf, D-40204 Düsseldorf, Germany
| | - T Tsushima
- Faculty of Agriculture and Life Science, Hirosaki University, Bubkyo-cho, Hirosaki 036-8561, Japan
| | - T Guček
- Slovenian Institute of Hop Research and Brewing, Cesta Žalskega tabora 2, SI-3310 Žalec, Slovenia
| | - G S Duraisamy
- Biology Centre ASCR v.v.i, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 370 05, Czech Republic
| | - T Sano
- Faculty of Agriculture and Life Science, Hirosaki University, Bubkyo-cho, Hirosaki 036-8561, Japan
| | - G Steger
- Institute of Physical Biology, Heinrich-Heine-Universität Düsseldorf, D-40204 Düsseldorf, Germany.
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221
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Miao LF, Yang F, Han CY, Pu YJ, Ding Y, Zhang LJ. Sex-specific responses to winter flooding, spring waterlogging and post-flooding recovery in Populus deltoides. Sci Rep 2017; 7:2534. [PMID: 28566759 PMCID: PMC5451430 DOI: 10.1038/s41598-017-02765-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 04/18/2017] [Indexed: 11/30/2022] Open
Abstract
Winter flooding events are common in some rivers and streams due to dam constructions, and flooding and waterlogging inhibit the growth of trees in riparian zones. This study investigated sex-specific morphological, physiological and ultrastructural responses to various durations of winter flooding and spring waterlogging stresses, and post-flooding recovery characteristics in Populus deltoides. There were no significant differences in the morphological, ultrastructural and the majority of physiological traits in trees subjected to medium and severe winter flooding stresses, suggesting that males and females of P. deltoides were winter flooding tolerant, and insensitive to winter flooding duration. Males were more tolerant to winter flooding stress in terms of photosynthesis and chlorophyll fluorescence than females. Females displayed greater oxidative damage due to flooding stress than males. Males developed more efficient antioxidant enzymatic systems to control reactive oxygen species. Both sexes had similarly strong post-flooding recovery capabilities in terms of plant growth, and physiological and ultrastructural parameters. However, Males had better recovery capabilities in terms of pigment content. These results increase the understanding of poplars's adaptation to winter flooding stress. They also elucidate sex-specific differences in response to flooding stress during the dormant season, and during post-flooding recovery periods.
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Affiliation(s)
- Ling-Feng Miao
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China
| | - Fan Yang
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China.
| | - Chun-Yu Han
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China
| | - Yu-Jin Pu
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China
| | - Yang Ding
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China
| | - Li-Jia Zhang
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan, 570228, P. R. China
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222
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Del Cueto J, Ionescu IA, Pičmanová M, Gericke O, Motawia MS, Olsen CE, Campoy JA, Dicenta F, Møller BL, Sánchez-Pérez R. Cyanogenic Glucosides and Derivatives in Almond and Sweet Cherry Flower Buds from Dormancy to Flowering. FRONTIERS IN PLANT SCIENCE 2017; 8:800. [PMID: 28579996 PMCID: PMC5437698 DOI: 10.3389/fpls.2017.00800] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 04/28/2017] [Indexed: 05/07/2023]
Abstract
Almond and sweet cherry are two economically important species of the Prunus genus. They both produce the cyanogenic glucosides prunasin and amygdalin. As part of a two-component defense system, prunasin and amygdalin release toxic hydrogen cyanide upon cell disruption. In this study, we investigated the potential role within prunasin and amygdalin and some of its derivatives in endodormancy release of these two Prunus species. The content of prunasin and of endogenous prunasin turnover products in the course of flower development was examined in five almond cultivars - differing from very early to extra-late in flowering time - and in one sweet early cherry cultivar. In all cultivars, prunasin began to accumulate in the flower buds shortly after dormancy release and the levels dropped again just before flowering time. In almond and sweet cherry, the turnover of prunasin coincided with increased levels of prunasin amide whereas prunasin anitrile pentoside and β-D-glucose-1-benzoate were abundant in almond and cherry flower buds at certain developmental stages. These findings indicate a role for the turnover of cyanogenic glucosides in controlling flower development in Prunus species.
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Affiliation(s)
- Jorge Del Cueto
- Department of Plant Breeding, CEBAS-CSICMurcia, Spain
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Irina A. Ionescu
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Martina Pičmanová
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Oliver Gericke
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Mohammed S. Motawia
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Carl E. Olsen
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
| | - José A. Campoy
- UMR 1332 BFP, INRA, University of BordeauxVillenave d’Ornon, France
| | | | - Birger L. Møller
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
| | - Raquel Sánchez-Pérez
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of CopenhagenFrederiksberg, Denmark
- VILLUM Research Center for Plant Plasticity, University of CopenhagenFrederiksberg, Denmark
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223
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Perrin M, Rossi S, Isabel N. Synchronisms between bud and cambium phenology in black spruce: early-flushing provenances exhibit early xylem formation. TREE PHYSIOLOGY 2017; 37:593-603. [PMID: 28338976 DOI: 10.1093/treephys/tpx019] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Accepted: 02/16/2017] [Indexed: 06/06/2023]
Abstract
Bud and cambial phenology represent the adaptation of species to the local environment that allows the growing season to be maximized while minimizing the risk of frost for the developing tissues. The temporal relationship between the apical and radial meristems can help in the understanding of tree growth as a whole process. The aim of this study was to compare cambial phenology in black spruce (Picea mariana (Mill.) B.S.P.) provenances classified as early and late bud flushing. The different phases of cambial phenology were assessed on wood microcores sampled weekly from April to October in 2014 and 2015 from 61 trees growing in a provenance trial in Quebec, Canada. Trees showing an early bud flush also exhibited early reactivation of xylem differentiation, although an average difference of 12 days for buds corresponded to small although significant differences of 4 days for xylem. Provenances with early bud flush had an early bud set and completed xylem formation earlier than late bud flush provenances. No significant difference in the period of xylem formation and total growth was observed between the flushing classes. Our results demonstrate that the ecotype differentiation of black spruce provenances represented by the phenological adaptation of buds to the local climate corresponds to specific growth dynamics of the xylem.
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Affiliation(s)
- Magali Perrin
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
| | - Sergio Rossi
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Nathalie Isabel
- Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Quebec, QC, Canada
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224
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Schiestl-Aalto P, Mäkelä A. Temperature dependence of needle and shoot elongation before bud break in Scots pine. TREE PHYSIOLOGY 2017; 37:316-325. [PMID: 28008084 DOI: 10.1093/treephys/tpw120] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Accepted: 12/01/2016] [Indexed: 06/06/2023]
Abstract
Knowledge about the early part of needle growth is deficient compared with what is known about shoot growth. It is however important to understand growth of different organs to be able to estimate the changes in whole tree growth in a changing environment. The onset of growth in spring has been observed to occur over some certain threshold value of momentary temperature or temperature accumulation. We measured the length growth of Scots pine (Pinus sylvestris L.) needles and shoots from March until bud break over 3 years. We first compared needle growth with concurrent shoot growth. Then, we quantified threshold temperature of growth (i) with a logistic regression based on momentary temperatures and (ii) with the temperature sum accumulation method. Temperature sum was calculated with combinations of various time steps, starting dates and threshold temperature values. Needle elongation began almost concurrently with shoot elongation and proceeded linearly in relation to shoot growth until bud break. When studying the threshold temperature for growth, the method with momentary temperature effect on growth onset yielded ambiguous results in our conditions. The best fit of an exponential regression between needle growth or length and temperature sum was obtained with threshold temperatures -1 to +2 °C, with several combinations of starting date and time step. We conclude that although growth onset is a momentary event the process leading to it is a long-term continuum where past time temperatures have to be accounted for, rather than a sudden switch from quiescence to active growth. Further, our results indicate that lower temperatures than the commonly used +5 °C are sufficient for actuating the growth process.
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Affiliation(s)
- Pauliina Schiestl-Aalto
- Department of Forest Sciences, University of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
| | - Annikki Mäkelä
- Department of Forest Sciences, University of Helsinki, P.O. Box 27, FI-00014 Helsinki, Finland
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225
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Warmest extreme year in U.S. history alters thermal requirements for tree phenology. Oecologia 2017; 183:1197-1210. [DOI: 10.1007/s00442-017-3838-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 02/07/2017] [Indexed: 11/26/2022]
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226
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Kumar G, Gupta K, Pathania S, Swarnkar MK, Rattan UK, Singh G, Sharma RK, Singh AK. Chilling Affects Phytohormone and Post-Embryonic Development Pathways during Bud Break and Fruit Set in Apple (Malus domestica Borkh.). Sci Rep 2017; 7:42593. [PMID: 28198417 PMCID: PMC5309832 DOI: 10.1038/srep42593] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2016] [Accepted: 01/11/2017] [Indexed: 01/10/2023] Open
Abstract
The availability of sufficient chilling during bud dormancy plays an important role in the subsequent yield and quality of apple fruit, whereas, insufficient chilling availability negatively impacts the apple production. The transcriptome profiling during bud dormancy release and initial fruit set under low and high chill conditions was performed using RNA-seq. The comparative high number of differentially expressed genes during bud break and fruit set under high chill condition indicates that chilling availability was associated with transcriptional reorganization. The comparative analysis reveals the differential expression of genes involved in phytohormone metabolism, particularly for Abscisic acid, gibberellic acid, ethylene, auxin and cytokinin. The expression of Dormancy Associated MADS-box, Flowering Locus C-like, Flowering Locus T-like and Terminal Flower 1-like genes was found to be modulated under differential chilling. The co-expression network analysis indentified two high chill specific modules that were found to be enriched for "post-embryonic development" GO terms. The network analysis also identified hub genes including Early flowering 7, RAF10, ZEP4 and F-box, which may be involved in regulating chilling-mediated dormancy release and fruit set. The results of transcriptome and co-expression network analysis indicate that chilling availability majorly regulates phytohormone-related pathways and post-embryonic development during bud break.
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Affiliation(s)
- Gulshan Kumar
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.,Academy of Scientific and Innovative Research, New Delhi, India
| | - Khushboo Gupta
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.,ICAR-Indian Institute of Agricultural Biotechnology, PDU Campus, IINRG, Namkum, Ranchi-834010 (JH), India
| | - Shivalika Pathania
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Mohit Kumar Swarnkar
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Usha Kumari Rattan
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Gagandeep Singh
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Ram Kumar Sharma
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India
| | - Anil Kumar Singh
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, 176061, India.,Academy of Scientific and Innovative Research, New Delhi, India.,ICAR-Indian Institute of Agricultural Biotechnology, PDU Campus, IINRG, Namkum, Ranchi-834010 (JH), India
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227
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Finch-Savage WE, Footitt S. Seed dormancy cycling and the regulation of dormancy mechanisms to time germination in variable field environments. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:843-856. [PMID: 28391330 DOI: 10.1093/jxb/erw477] [Citation(s) in RCA: 119] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Many molecular mechanisms that regulate dormancy have been identified individually in controlled laboratory studies. However, little is known about how the seed employs this complex suite of mechanisms during dormancy cycling in the variable environment of the soil seed bank. Nevertheless, this behaviour is essential to ensure germination takes place in a favourable habitat and climate space, and in the correct season for the resulting plant to complete its life cycle. During their time in the soil seed bank, seeds continually adjust their dormancy status by sensing a range of environmental signals. Those related to slow seasonal change (e.g. temperature) are used for temporal sensing to determine the time of year and depth of dormancy. This alters their sensitivity to signals related to their spatial environment (e.g. light, nitrate, and water potential) that indicate that conditions are suitable for germination, and so trigger the termination of dormancy. We review work on the physiological, molecular, and ecological aspects of seed dormancy in Arabidopsis and interpret it in the context of dormancy cycling in the soil seed bank. This approach has provided new insight into the co-ordination of mechanisms and signalling networks, and the multidimensional sensing that regulates dormancy cycling in a variable environment.
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Affiliation(s)
- William E Finch-Savage
- School of Life Sciences, Wellesbourne Campus, University of Warwick, Warwickshire CV35 9EF, UK
| | - Steven Footitt
- School of Life Sciences, Wellesbourne Campus, University of Warwick, Warwickshire CV35 9EF, UK
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228
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Wu R, Wang T, Warren BAW, Allan AC, Macknight RC, Varkonyi-Gasic E. Kiwifruit SVP2 gene prevents premature budbreak during dormancy. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:1071-1082. [PMID: 28158721 PMCID: PMC5853213 DOI: 10.1093/jxb/erx014] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Accepted: 01/18/2017] [Indexed: 05/19/2023]
Abstract
Overexpression of SVP2 in kiwifruit delays budbreak before sufficient winter chilling. SVP2-mediated vegetative growth restriction involves stress response pathways, and commonalities exist between Arabidopsis and kiwifruit SVP targets.
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Affiliation(s)
- Rongmei Wu
- The New Zealand Institute for Plant & Food Research Limited (Plant & Food Research) Mt Albert, Private Bag 92169, Auckland Mail Centre, Auckland, New Zealand
| | - Tianchi Wang
- The New Zealand Institute for Plant & Food Research Limited (Plant & Food Research) Mt Albert, Private Bag 92169, Auckland Mail Centre, Auckland, New Zealand
| | - Ben A W Warren
- The New Zealand Institute for Plant & Food Research Limited (Plant & Food Research) Mt Albert, Private Bag 92169, Auckland Mail Centre, Auckland, New Zealand
| | - Andrew C Allan
- The New Zealand Institute for Plant & Food Research Limited (Plant & Food Research) Mt Albert, Private Bag 92169, Auckland Mail Centre, Auckland, New Zealand
- School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand
| | | | - Erika Varkonyi-Gasic
- The New Zealand Institute for Plant & Food Research Limited (Plant & Food Research) Mt Albert, Private Bag 92169, Auckland Mail Centre, Auckland, New Zealand
- Correspondence:
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229
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Gillespie LM, Volaire FA. Are winter and summer dormancy symmetrical seasonal adaptive strategies? The case of temperate herbaceous perennials. ANNALS OF BOTANY 2017; 119:311-323. [PMID: 28087658 PMCID: PMC5314652 DOI: 10.1093/aob/mcw264] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 10/27/2016] [Indexed: 05/03/2023]
Abstract
BACKGROUND Dormancy in higher plants is an adaptive response enabling plant survival during the harshest seasons and has been more explored in woody species than in herbaceous species. Nevertheless, winter and summer shoot meristem dormancy are adaptive strategies that could play a major role in enhancing seasonal stress tolerance and resilience of widespread herbaceous plant communities. SCOPE This review outlines the symmetrical aspects of winter and summer dormancy in order to better understand plant adaptation to severe stress, and highlight research priorities in a changing climate. Seasonal dormancy is a good model to explore the growth-stress survival trade-off and unravel the relationships between growth potential and stress hardiness. Although photoperiod and temperature are known to play a crucial, though reversed, role in the induction and release of both types of dormancy, the thresholds and combined effects of these environmental factors remain to be identified. The biochemical compounds involved in induction or release in winter dormancy (abscisic acid, ethylene, sugars, cytokinins and gibberellins) could be a priority research focus for summer dormancy. To address these research priorities, herbaceous species, being more tractable than woody species, are excellent model plants for which both summer and winter dormancy have been clearly identified. CONCLUSIONS Summer and winter dormancy, although responding to inverse conditions, share many characteristics. This analogous nature can facilitate research as well as lead to insight into plant adaptations to extreme conditions and the evolution of phenological patterns of species and communities under climate change. The development of phenotypes showing reduced winter and/or enhanced summer dormancy may be expected and could improve adaptation to less predictable environmental stresses correlated with future climates. To this end, it is suggested to explore the inter- and intraspecific genotypic variability of dormancy and its plasticity according to environmental conditions to contribute to predicting and mitigating global warming.
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Affiliation(s)
| | - Florence A Volaire
- INRA USC 1338, CEFE UMR 5175, CNRS, 1919 Route de Mende, 34293 Montpellier cedex, France
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230
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Singh RK, Svystun T, AlDahmash B, Jönsson AM, Bhalerao RP. Photoperiod- and temperature-mediated control of phenology in trees - a molecular perspective. THE NEW PHYTOLOGIST 2017; 213:511-524. [PMID: 27901272 DOI: 10.1111/nph.14346] [Citation(s) in RCA: 133] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 10/07/2016] [Indexed: 05/17/2023]
Abstract
Contents 511 I. 511 II. 512 III. 513 IV. 513 V. 517 VI. 517 VII. 521 VIII. 521 Acknowledgements 521 References 521 SUMMARY: Trees growing in boreal and temperate regions synchronize their growth with seasonal climatic changes in adaptive responses that are essential for their survival. These trees cease growth before the winter and establish a dormant state during which growth cessation is maintained by repression of responses to growth-promotive signals. Reactivation of growth in the spring follows the release from dormancy promoted by prolonged exposure to low temperature during the winter. The timing of the key events and regulation of the molecular programs associated with the key stages of the annual growth cycle are controlled by two main environmental cues: photoperiod and temperature. Recently, key components mediating photoperiodic control of growth cessation and bud set have been identified, and striking similarities have been observed in signaling pathways controlling growth cessation in trees and floral transition in Arabidopsis. Although less well understood, the regulation of bud dormancy and bud burst may involve cell-cell communication and chromatin remodeling. Here, we discuss current knowledge of the molecular-level regulation of the annual growth cycle of woody trees in temperate and boreal regions, and identify key questions that need to be addressed in the future.
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Affiliation(s)
- Rajesh Kumar Singh
- Department of Forest Genetics and Plant Physiology, SLU, S-901 83, Umeå, Sweden
| | - Tetiana Svystun
- Department of Physical Geography and Ecosystem Science, Lund University, Sölvegatan 12, S-223 62, Lund, Sweden
| | - Badr AlDahmash
- College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Anna Maria Jönsson
- Department of Physical Geography and Ecosystem Science, Lund University, Sölvegatan 12, S-223 62, Lund, Sweden
| | - Rishikesh P Bhalerao
- Department of Forest Genetics and Plant Physiology, SLU, S-901 83, Umeå, Sweden
- College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
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231
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Hao X, Yang Y, Yue C, Wang L, Horvath DP, Wang X. Comprehensive Transcriptome Analyses Reveal Differential Gene Expression Profiles of Camellia sinensis Axillary Buds at Para-, Endo-, Ecodormancy, and Bud Flush Stages. FRONTIERS IN PLANT SCIENCE 2017; 8:553. [PMID: 28458678 PMCID: PMC5394108 DOI: 10.3389/fpls.2017.00553] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Accepted: 03/27/2017] [Indexed: 05/19/2023]
Abstract
Winter dormancy is an important biological feature for tea plant to survive cold winters, and it also affects the economic output of tea plant, one of the few woody plants in the world whose leaves are harvested and one of the few non-conifer evergreen species with characterized dormancies. To discover the bud dormancy regulation mechanism of tea plant in winter, we analyzed the global gene expression profiles of axillary buds at the paradormancy, endodormancy, ecodormancy, and bud flush stages by RNA-Seq analysis. In total, 16,125 differentially expressed genes (DEGs) were identified among the different measured conditions. Gene set enrichment analysis was performed on the DEGs identified from each dormancy transition. Enriched gene ontology terms, gene sets and transcription factors were mainly associated with epigenetic mechanisms, phytohormone signaling pathways, and callose-related cellular communication regulation. Furthermore, differentially expressed transcription factors as well as chromatin- and phytohormone-associated genes were identified. GI-, CAL-, SVP-, PHYB-, SFR6-, LHY-, ZTL-, PIF4/6-, ABI4-, EIN3-, ETR1-, CCA1-, PIN3-, CDK-, and CO-related gene sets were enriched. Based on sequence homology analysis, we summarized the key genes with significant expression differences in poplar and tea plant. The major molecular pathways involved in tea plant dormancy regulation are consistent with those of poplar to a certain extent; however, the gene expression patterns varied. This study provides the global transcriptome profiles of overwintering buds at different dormancy stages and is meaningful for improving the understanding of bud dormancy in tea plant.
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Affiliation(s)
- Xinyuan Hao
- Tea Research Institute, Chinese Academy of Agricultural SciencesHangzhou, China
- National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of AgricultureHangzhou, China
| | - Yajun Yang
- Tea Research Institute, Chinese Academy of Agricultural SciencesHangzhou, China
- National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of AgricultureHangzhou, China
| | - Chuan Yue
- Tea Research Institute, Chinese Academy of Agricultural SciencesHangzhou, China
- National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of AgricultureHangzhou, China
| | - Lu Wang
- Tea Research Institute, Chinese Academy of Agricultural SciencesHangzhou, China
- National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of AgricultureHangzhou, China
| | - David P. Horvath
- Biosciences Research Laboratory, Sunflower and Plant Biology Research Unit, United States Department of Agriculture-Agricultural Research Service, FargoND, USA
- *Correspondence: David P. Horvath, Xinchao Wang,
| | - Xinchao Wang
- Tea Research Institute, Chinese Academy of Agricultural SciencesHangzhou, China
- National Center for Tea Improvement, Key Laboratory of Tea Biology and Resources Utilization, Ministry of AgricultureHangzhou, China
- *Correspondence: David P. Horvath, Xinchao Wang,
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232
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Brunner AM, Varkonyi-Gasic E, Jones RC. Phase Change and Phenology in Trees. COMPARATIVE AND EVOLUTIONARY GENOMICS OF ANGIOSPERM TREES 2017. [DOI: 10.1007/7397_2016_30] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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233
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Ionescu IA, Møller BL, Sánchez-Pérez R. Chemical control of flowering time. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:369-382. [PMID: 28204655 DOI: 10.1093/jxb/erw427] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Flowering at the right time is of great importance; it secures seed production and therefore species survival and crop yield. In addition to the genetic network controlling flowering time, there are a number of much less studied metabolites and exogenously applied chemicals that may influence the transition to flowering as well as flower opening. Increased emphasis on research within this area has the potential to counteract the negative effects of global warming on flowering time, especially in perennial crop plants. Perennial crops have a requirement for winter chill, but winters become increasingly warm in temperate regions. This has dramatic effects on crop yield. Different strategies are therefore being developed to engineer flowering time to match local growing conditions. The majority of these efforts are within plant breeding, which benefits from a substantial amount of knowledge on the genetic aspects of flowering time regulation in annuals, but less so in perennials. An alternative to plant breeding approaches is to engineer flowering time chemically via the external application of flower-inducing compounds. This review discusses a variety of exogenously applied compounds used in fruit farming to date, as well as endogenous growth substances and metabolites that can influence flowering time of annuals and perennials.
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Affiliation(s)
- Irina Alexandra Ionescu
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
- Villum Center for Plant Plasticity, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
| | - Birger Lindberg Møller
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
- Villum Center for Plant Plasticity, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
| | - Raquel Sánchez-Pérez
- Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
- Villum Center for Plant Plasticity, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
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234
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Yarur A, Soto E, León G, Almeida AM. The sweet cherry (Prunus avium) FLOWERING LOCUS T gene is expressed during floral bud determination and can promote flowering in a winter-annual Arabidopsis accession. PLANT REPRODUCTION 2016; 29:311-322. [PMID: 27878597 DOI: 10.1007/s00497-016-0296-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2016] [Accepted: 11/15/2016] [Indexed: 05/18/2023]
Abstract
FT gene is expressed in leaves and buds and is involved in floral meristem determination and bud development in sweet cherry. In woody fruit perennial trees, floral determination, dormancy and bloom, depends on perception of different environmental and endogenous cues which converge to a systemic signaling gene known as FLOWERING LOCUS T (FT). In long-day flowering plants, FT is expressed in the leaves on long days. The protein travels through the phloem to the shoot apical meristem, where it induces flower determination. In perennial plants, meristem determination and flowering are separated by a dormancy period. Meristem determination takes place in summer, but flowering occurs only after a dormancy period and cold accumulation during winter. The roles of FT are not completely clear in meristem determination, dormancy release, and flowering in perennial plants. We cloned FT from sweet cherry (Prunus avium) and analyzed its expression pattern in leaves and floral buds during spring and summer. Phylogenetic analysis shows high identity of the FT cloned sequence with orthologous genes from other Rosaceae species. Our results show that FT is expressed in both leaves and floral buds and increases when the daylight reached 12 h. The peak in FT expression was coincident with floral meristem identity genes expression and morphological changes typical of floral meristem determination. The Edi-0 Arabidopsis ecotype, which requires vernalization to flower, was transformed with a construct for overexpression of PavFT. These transgenic plants showed an early-flowering phenotype without cold treatment. Our results suggest that FT is involved in floral meristem determination and bud development in sweet cherry. Moreover, we show that FT is expressed in both leaves and floral buds in this species, in contrast to annual plants.
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Affiliation(s)
- Antonia Yarur
- Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andrés Bello, República 217, Santiago, Chile
| | - Esteban Soto
- Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andrés Bello, República 217, Santiago, Chile
| | - Gabriel León
- Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andrés Bello, República 217, Santiago, Chile
| | - Andrea Miyasaka Almeida
- Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andrés Bello, República 217, Santiago, Chile.
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235
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Kumar A, Chawla V, Sharma E, Mahajan P, Shankar R, Yadav SK. Comparative Transcriptome Analysis of Chinary, Assamica and Cambod tea (Camellia sinensis) Types during Development and Seasonal Variation using RNA-seq Technology. Sci Rep 2016; 6:37244. [PMID: 27853259 PMCID: PMC5112563 DOI: 10.1038/srep37244] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Accepted: 10/27/2016] [Indexed: 11/16/2022] Open
Abstract
Tea quality and yield is influenced by various factors including developmental tissue, seasonal variation and cultivar type. Here, the molecular basis of these factors was investigated in three tea cultivars namely, Him Sphurti (H), TV23 (T), and UPASI-9 (U) using RNA-seq. Seasonal variation in these cultivars was studied during active (A), mid-dormant (MD), dormant (D) and mid-active (MA) stages in two developmental tissues viz. young and old leaf. Development appears to affect gene expression more than the seasonal variation and cultivar types. Further, detailed transcript and metabolite profiling has identified genes such as F3'H, F3'5'H, FLS, DFR, LAR, ANR and ANS of catechin biosynthesis, while MXMT, SAMS, TCS and XDH of caffeine biosynthesis/catabolism as key regulators during development and seasonal variation among three different tea cultivars. In addition, expression analysis of genes related to phytohormones such as ABA, GA, ethylene and auxin has suggested their role in developmental tissues during seasonal variation in tea cultivars. Moreover, differential expression of genes involved in histone and DNA modification further suggests role of epigenetic mechanism in coordinating global gene expression during developmental and seasonal variation in tea. Our findings provide insights into global transcriptional reprogramming associated with development and seasonal variation in tea.
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Affiliation(s)
- Ajay Kumar
- Plant Metabolic Engineering Laboratory, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
- Academy of Scientific and Innovative Research, New Delhi, India
| | - Vandna Chawla
- Studio of Computational Biology & Bioinformatics, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, Punjab, India
| | - Eshita Sharma
- Food and Nutraceutical Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
| | - Pallavi Mahajan
- Studio of Computational Biology & Bioinformatics, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
| | - Ravi Shankar
- Academy of Scientific and Innovative Research, New Delhi, India
- Studio of Computational Biology & Bioinformatics, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
| | - Sudesh Kumar Yadav
- Plant Metabolic Engineering Laboratory, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur-176061 (HP), India
- Academy of Scientific and Innovative Research, New Delhi, India
- Center of Innovative and Applied Bioprocessing (CIAB), Mohali-160071, Punjab, India
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236
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Hamilton JA, El Kayal W, Hart AT, Runcie DE, Arango-Velez A, Cooke JEK. The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca). TREE PHYSIOLOGY 2016; 36:1432-1448. [PMID: 27449791 DOI: 10.1093/treephys/tpw061] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 05/23/2016] [Indexed: 06/06/2023]
Abstract
Timely responses to environmental cues enable the synchronization of phenological life-history transitions essential for the health and survival of north-temperate and boreal tree species. While photoperiodic cues will remain persistent under climate change, temperature cues may vary, contributing to possible asynchrony in signals influencing developmental and physiological transitions essential to forest health. Understanding the relative contribution of photoperiod and temperature as determinants of the transition from active growth to dormancy is important for informing adaptive forest management decisions that consider future climates. Using a combination of photoperiod (long = 20 h or short = 8 h day lengths) and temperature (warm = 22 °C/16 °C and cool = 8 °C/4 °C day/night, respectively) treatments, we used microscopy, physiology and modeling to comprehensively examine hallmark traits of the growth-dormancy transition-including bud formation, growth cessation, cold hardiness and gas exchange-within two provenances of white spruce [Picea glauca (Moench) Voss] spanning a broad latitude in Alberta, Canada. Following exposure to experimental treatments, seedlings were transferred to favorable conditions, and the depth of dormancy was assessed by determining the timing and ability of spruce seedlings to resume growth. Short photoperiods promoted bud development and growth cessation, whereas longer photoperiods extended the growing season through the induction of lammas growth. In contrast, cool temperatures under both photoperiodic conditions delayed bud development. Photoperiod strongly predicted the development of cold hardiness, whereas temperature predicted photosynthetic rates associated with active growth. White spruce was capable of attaining endodormancy, but its release was environmentally determined. Dormancy depth varied substantially across experimental treatments suggesting that environmental cues experienced within one season could affect growth in the following season, which is particularly important for a determinate species such as white spruce. The joint influence of these environmental cues points toward the importance of including local constant photoperiod and shifting temperature cues into predictive models that consider how climate change may affect northern forests.
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Affiliation(s)
- Jill A Hamilton
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Biological Sciences, North Dakota State University, Fargo, ND 58102, USA
| | - Walid El Kayal
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada N1G 2W1
| | - Ashley T Hart
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
| | - Daniel E Runcie
- Department of Plant Sciences, University of California, Davis, CA 95616, USA
| | - Adriana Arango-Velez
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Forestry and Horticulture, The Connecticut Agricultural Experiment Station, New Haven, CT 06504, USA
| | - Janice E K Cooke
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
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237
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Yamagishi N, Kume K, Hikage T, Takahashi Y, Bidadi H, Wakameda K, Saitoh Y, Yoshikawa N, Tsutsumi KI. Identification and functional analysis of SVP ortholog in herbaceous perennial plant Gentiana triflora: Implication for its multifunctional roles. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 248:1-7. [PMID: 27181941 DOI: 10.1016/j.plantsci.2016.04.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Revised: 03/24/2016] [Accepted: 04/09/2016] [Indexed: 06/05/2023]
Abstract
Information concerning to regulation of vegetative phase and floral initiation in herbaceous perennial plants has been limited to a few plant species. To know and compare flowering regulation in a wider range of plant species, we identified and characterized SHORT VEGETATIVE PHASE (SVP)-like genes (GtSVP-L1 and GtSVP-L2) from herbaceous perennial gentian (Gentiana triflora). Apple latent spherical virus (ALSV)-mediated silencing of the GtSVP-L1 in G. triflora seedlings resulted in early flowering and shortened vegetative phase by about one-third period of time, without vernalization. This indicated that GtSVP-L1 acts as a negative regulator of flowering and vegetative phase. Seasonal change in the expression of GtSVP was monitored in the overwinter buds (OWBs) of G. triflora. It was found that the levels of GtSVP-L1 mRNA in OWBs increased concomitantly with induction and/or maintenance of dormancy, then decreased toward release from dormancy, while that of GtSVP-L2 mRNA remained low and unchanged. These results implied that, in herbaceous perennial plants, SVP ortholog might concern to activity-dormancy control, as well as negative regulation in flowering. Practically, these results can be applicable to non-time-consuming technologies for breeding.
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Affiliation(s)
- Noriko Yamagishi
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Kohei Kume
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Takashi Hikage
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Hachimantai City Floricultural Research and Development Center, Hachimantai, Iwate 028-7592, Japan
| | - Yui Takahashi
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Haniyeh Bidadi
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Keisuke Wakameda
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Yasushi Saitoh
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Nobuyuki Yoshikawa
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan
| | - Ken-Ichi Tsutsumi
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Iwate University, Morioka, Iwate 020-8550, Japan.
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238
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Anh Tuan P, Bai S, Saito T, Imai T, Ito A, Moriguchi T. Involvement of EARLY BUD-BREAK, an AP2/ERF Transcription Factor Gene, in Bud Break in Japanese Pear (Pyrus pyrifolia Nakai) Lateral Flower Buds: Expression, Histone Modifications and Possible Target Genes. PLANT & CELL PHYSIOLOGY 2016; 57:1038-47. [PMID: 26940832 DOI: 10.1093/pcp/pcw041] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Accepted: 02/19/2016] [Indexed: 05/05/2023]
Abstract
In the Japanese pear (Pyrus pyrifolia Nakai) 'Kosui', three developmental stages of lateral flower buds have been proposed to occur during ecodormancy to the flowering phase, i.e. rapid enlargement, sprouting and flowering. Here, we report an APETALA2/ethylene-responsive factor (AP2/ERF) transcription factor gene, named pear EARLY BUD-BREAK (PpEBB), which was highly expressed during the rapid enlargement stage occurring prior to the onset of bud break in flower buds. Gene expression analysis revealed that PpEBB expression was dramatically increased during the rapid enlargement stage in three successive growing seasons. PpEBB transcript levels peaked 1 week prior to onset of bud break in 'Kosui' potted plants treated with hydrogen cyanamide or water under forcing conditions. Chromatin immunoprecipitation-quantitative PCR showed that higher levels of active histone modifications (trimethylation of the histone H3 tail at Lys4) in the 5'-upstream and start codon regions of the PpEBB gene were associated with the induced expression level of PpEBB during the rapid enlargement stage. In addition, we provide evidence that PpEBB may interact with and regulate pear four D-type cyclin (PpCYCD3) genes during bud break in 'Kosui' lateral flower buds. PpEBB significantly increased the promoter activities of four PpCYCD3 genes in a dual-luciferase assay using tobacco leaves. Taken together, our findings uncovered aspects of the bud break regulatory mechanism in the Japanese pear and provided further evidence that the EBB family plays an important role in bud break in perennial plants.
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Affiliation(s)
- Pham Anh Tuan
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan
| | - Songling Bai
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan Present address: Institute of Fruit Science, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Takanori Saito
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan Present address: Graduate School of Horticulture, Chiba University, Matsudo, Chiba, 271-8510 Japan
| | - Tsuyoshi Imai
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan
| | - Akiko Ito
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan
| | - Takaya Moriguchi
- NARO Institute of Fruit Tree Science, Tsukuba, Ibaraki, 305-8605 Japan
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239
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Considine MJ, Considine JA. On the language and physiology of dormancy and quiescence in plants. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:3189-203. [PMID: 27053719 DOI: 10.1093/jxb/erw138] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The language of dormancy is rich and poetic, as researchers spanning disciplines and decades have attempted to understand the spell that entranced 'Sleeping Beauty', and how she was gently awoken. The misleading use of 'dormancy', applied to annual axillary buds, for example, has confounded progress. Language is increasingly important as genetic and genomic approaches become more accessible to species of agricultural and ecological importance. Here we examine how terminology has been applied to different eco-physiological states in plants, and with pertinent reference to quiescent states described in other domains of life, in order to place plant quiescence and dormancy in a more complete context than previously described. The physiological consensus defines latency or quiescence as opportunistic avoidance states, where growth resumes in favourable conditions. In contrast, the dormant state in higher plants is entrained in the life history of the organism. Competence to resume growth requires quantitative and specific conditioning. This definition applies only to the embryo of seeds and specialized meristems in higher plants; however, mechanistic control of dormancy extends to mobile signals from peripheral tissues and organs, such as the endosperm of seed or subtending leaf of buds. The distinction between dormancy, quiescence, and stress-hardiness remains poorly delineated, most particularly in buds of winter perennials, which comprise multiple meristems of differing organogenic states. Studies in seeds have shown that dormancy is not a monogenic trait, and limited study has thus far failed to canalize dormancy as seen in seeds and buds. We argue that a common language, based on physiology, is central to enable further dissection of the quiescent and dormant states in plants. We direct the topic largely to woody species showing a single cycle of growth and reproduction per year, as these bear the majority of global timber, fruit, and nut production, as well being of great ecological value. However, for context and hypotheses, we draw on knowledge from annuals and other specialized plant conditions, from a perspective of the major physical, metabolic, and molecular cues that regulate cellular activity.
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Affiliation(s)
- Michael J Considine
- School of Plant Biology, and The Institute of Agriculture, The University of Western Australia, Perth, WA 6009 Australia Department of Agriculture and Food Western Australia, South Perth, WA 6151 Australia Centre for Plant Sciences, University of Leeds, Leeds, Yorkshire LS2 9JT, UK
| | - John A Considine
- School of Plant Biology, and The Institute of Agriculture, The University of Western Australia, Perth, WA 6009 Australia
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240
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Beltramo C, Valentini N, Portis E, Torello Marinoni D, Boccacci P, Sandoval Prando MA, Botta R. Genetic mapping and QTL analysis in European hazelnut (Corylus avellana L.). MOLECULAR BREEDING 2016; 36:27. [PMID: 0 DOI: 10.1007/s11032-016-0450-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
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241
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Wu T, Yang C, Ding B, Feng Z, Wang Q, He J, Tong J, Xiao L, Jiang L, Wan J. Microarray-based gene expression analysis of strong seed dormancy in rice cv. N22 and less dormant mutant derivatives. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 99:27-38. [PMID: 26713549 DOI: 10.1016/j.plaphy.2015.12.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 11/28/2015] [Accepted: 12/01/2015] [Indexed: 05/04/2023]
Abstract
Seed dormancy in rice is an important trait related to the pre-harvest sprouting resistance. In order to understand the molecular mechanisms of seed dormancy, gene expression was investigated by transcriptome analysis using seeds of the strongly dormant cultivar N22 and its less dormant mutants Q4359 and Q4646 at 24 days after heading (DAH). Microarray data revealed more differentially expressed genes in Q4359 than in Q4646 compared to N22. Most genes differing between Q4646 and N22 also differed between Q4359 and N22. GO analysis of genes differentially expressed in both Q4359 and Q4646 revealed that some genes such as those for starch biosynthesis were repressed, whereas metabolic genes such as those for carbohydrate metabolism were enhanced in Q4359 and Q4646 seeds relative to N22. Expression of some genes involved in cell redox homeostasis and chromatin remodeling differed significantly only between Q4359 and N22. The results suggested a close correlation between cell redox homeostasis, chromatin remodeling and seed dormancy. In addition, some genes involved in ABA signaling were down-regulated, and several genes involved in GA biosynthesis and signaling were up-regulated. These observations suggest that reduced seed dormancy in Q4359 was regulated by ABA-GA antagonism. A few differentially expressed genes were located in the regions containing qSdn-1 and qSdn-5 suggesting that they could be candidate genes underlying seed dormancy. Our work provides useful leads to further determine the underling mechanisms of seed dormancy and for cloning seed dormancy genes from N22.
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Affiliation(s)
- Tao Wu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chunyan Yang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Baoxu Ding
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhiming Feng
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Qian Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jun He
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jianhua Tong
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha, 410128, China
| | - Langtao Xiao
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha, 410128, China
| | - Ling Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Jianmin Wan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Research Center of Jiangsu Plant Gene Engineering, Nanjing Agricultural University, Nanjing, 210095, China; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
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242
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Holliday JA, Zhou L, Bawa R, Zhang M, Oubida RW. Evidence for extensive parallelism but divergent genomic architecture of adaptation along altitudinal and latitudinal gradients in Populus trichocarpa. THE NEW PHYTOLOGIST 2016; 209:1240-51. [PMID: 26372471 DOI: 10.1111/nph.13643] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Accepted: 08/13/2015] [Indexed: 05/10/2023]
Abstract
Adaptation to climate across latitude and altitude reflects shared climatic constraints, which may lead to parallel adaptation. However, theory predicts that higher gene flow should favor more concentrated genomic architectures, which would lead to fewer locally maladapted recombinants. We used exome capture to resequence the gene space along a latitudinal and two altitudinal transects in the model tree Populus trichocapra. Adaptive trait phenotyping was coupled with FST outlier tests and sliding window analysis to assess the degree of parallel adaptation as well as the genomic distribution of outlier loci. Up to 51% of outlier loci overlapped between transect pairs and up to 15% of these loci overlapped among all three transects. Genomic clustering of adaptive loci was more pronounced for altitudinal than latitudinal transects. In both altitudinal transects, there was a larger number of these 'islands of divergence', which were on average longer and included several of exceptional physical length. Our results suggest that recapitulation of genetic clines over latitude and altitude involves extensive parallelism, but that steep altitudinal clines generate islands of divergence. This suggests that physical proximity of genes in coadapted complexes may buffer against the movement of maladapted alleles from geographically proximal but climatically distinct populations.
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Affiliation(s)
- Jason A Holliday
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA
| | - Lecong Zhou
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA
| | - Rajesh Bawa
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA
| | - Man Zhang
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA
| | - Regis W Oubida
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State University, 304 Cheatham Hall, Blacksburg, VA, 24061, USA
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243
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Ding J, Nilsson O. Molecular regulation of phenology in trees-because the seasons they are a-changin'. CURRENT OPINION IN PLANT BIOLOGY 2016; 29:73-9. [PMID: 26748352 DOI: 10.1016/j.pbi.2015.11.007] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Revised: 11/05/2015] [Accepted: 11/18/2015] [Indexed: 05/05/2023]
Abstract
The perennial trees, in contrast to the much more studied annual plants, have to adapt their vegetative growth and development to the sometimes extremely contrasting environmental conditions that occur over the different seasons. Recently, studies of the molecular framework underlying this adaptation in Populus trees is reinforcing the notion that the genetic pathways controlling growth and dormancy cycles have a remarkable conservation with the pathways controlling the regulation of flowering time in annual plants. Insight into these mechanisms will be important for our understanding of how trees will respond to various future global climate scenarios.
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Affiliation(s)
- Jihua Ding
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå 901 83, Sweden
| | - Ove Nilsson
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå 901 83, Sweden.
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244
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Lenz A, Hoch G, Körner C, Vitasse Y. Convergence of leaf‐out towards minimum risk of freezing damage in temperate trees. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12623] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Armando Lenz
- Institute of Botany University of Basel 4056 Basel Switzerland
| | - Günter Hoch
- Institute of Botany University of Basel 4056 Basel Switzerland
| | | | - Yann Vitasse
- Institute of Botany University of Basel 4056 Basel Switzerland
- Institute of Geography University of Neuchatel Neuchatel Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL Neuchatel Switzerland
- WSL Institute for Snow and Avalanche Research SLF Davos Switzerland
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245
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Ito A, Saito T, Sakamoto D, Sugiura T, Bai S, Moriguchi T. Physiological differences between bud breaking and flowering after dormancy completion revealed by DAM and FT/TFL1 expression in Japanese pear (Pyrus pyrifolia). TREE PHYSIOLOGY 2016; 36:109-20. [PMID: 26546364 DOI: 10.1093/treephys/tpv115] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Accepted: 10/02/2015] [Indexed: 05/04/2023]
Abstract
The regulatory mechanisms underlying bud breaking (scale leaf elongation) and flowering in the lateral flower buds of Japanese pear (Pyrus pyrifolia Nakai 'Kosui') are unknown. To more fully characterize these processes, we treated pear trees with different amounts of chilling initiated at different times. Chilling for ∼900 h at 6 °C always induced bud breaking (scale elongation in ≥70% lateral flower bud) when provided between October and February, whereas chilling provided earlier (between October and December) was less effective on flowering (floret growth and development) than later chilling and the flowering rate increased with longer chilling durations. During chilling, the expression of pear DAMs (PpMADS13-1, 13-2 and 13-3) in lateral flower buds decreased as chilling accumulated irrespective of the timing of chilling. In addition, pear TFL1 (PpTFL1-1a) in the lateral flower buds was expressed at higher levels when the time interval for chilling was earlier. On the other hand, during forcing at 15 °C after chilling, the expression pattern of all three PpMADS13 genes was similar among the treatments, and the expression levels seemed lower in the treatment where scale leaves of the lateral flower bud elongated faster, whereas pear FT (PpFT2a) was expressed at higher levels in the buds whose flower clusters elongated more vigorously during forcing. From these results, we infer that flowering time may be mediated via the balance of flowering-related genes FT and TFL1, whereas bud breaking may be regulated via the DAM genes in Japanese pear.
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Affiliation(s)
- Akiko Ito
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
| | - Takanori Saito
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan Present address: Graduate School of Horticulture, Chiba University, Matsudo, Chiba 271-8510, Japan
| | - Daisuke Sakamoto
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
| | - Toshihiko Sugiura
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
| | - Songling Bai
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan Present address: Department of Horticulture, The State Agricultural Ministry's Key Laboratory of Horticultural Plant Growth, Development & Quality Improvement, Zhejiang University, Hangzhou, Zhejiang Province 310058, China
| | - Takaya Moriguchi
- NARO Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
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246
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Aitken SN, Bemmels JB. Time to get moving: assisted gene flow of forest trees. Evol Appl 2016; 9:271-90. [PMID: 27087852 PMCID: PMC4780373 DOI: 10.1111/eva.12293] [Citation(s) in RCA: 169] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Accepted: 06/22/2015] [Indexed: 12/14/2022] Open
Abstract
Geographic variation in trees has been investigated since the mid-18th century. Similar patterns of clinal variation have been observed along latitudinal and elevational gradients in common garden experiments for many temperate and boreal species. These studies convinced forest managers that a 'local is best' seed source policy was usually safest for reforestation. In recent decades, experimental design, phenotyping methods, climatic data and statistical analyses have improved greatly and refined but not radically changed knowledge of clines. The maintenance of local adaptation despite high gene flow suggests selection for local adaptation to climate is strong. Concerns over maladaptation resulting from climate change have motivated many new genecological and population genomics studies; however, few jurisdictions have implemented assisted gene flow (AGF), the translocation of pre-adapted individuals to facilitate adaptation of planted forests to climate change. Here, we provide evidence that temperate tree species show clines along climatic gradients sufficiently similar for average patterns or climate models to guide AGF in the absence of species-specific knowledge. Composite provenancing of multiple seed sources can be used to increase diversity and buffer against future climate uncertainty. New knowledge will continue to refine and improve AGF as climates warm further.
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Affiliation(s)
- Sally N. Aitken
- Department of Forest and Conservation SciencesUniversity of British ColumbiaVancouverBCCanada
| | - Jordan B. Bemmels
- Department of Ecology and Evolutionary BiologyUniversity of MichiganAnn ArborMIUSA
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247
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Busov V, Carneros E, Yakovlev I. EARLY BUD-BREAK1 (EBB1) defines a conserved mechanism for control of bud-break in woody perennials. PLANT SIGNALING & BEHAVIOR 2016; 11:e1073873. [PMID: 26317150 PMCID: PMC4883858 DOI: 10.1080/15592324.2015.1073873] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Bud-break is an environmentally and economically important trait in trees, shrubs and vines from temperate latitudes. Poor synchronization of bud-break timing with local climates can lead to frost injuries, susceptibility to pests and pathogens and poor crop yields in fruit trees and vines. The rapid climate changes outpace the adaptive capacities of plants to respond through natural selection. This is particularly true for trees which have long generation cycle and thus the adaptive changes are significantly delayed. Therefore, to devise appropriate breeding and conservation strategies, it is imperative to understand the molecular underpinnings that govern dormancy mechanisms. We have recently identified and characterized the poplar EARLY BUD-BREAK 1 (EBB1) gene. EBB1 is a positive regulator of bud-break and encodes a transcription factor from the AP2/ERF family. Here, using comparative and functional genomics approaches we show that EBB1 function in regulation of bud-break is likely conserved across wide range of woody perennial species with importance to forestry and agriculture.
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Affiliation(s)
- Victor Busov
- School of Forest Resources and Environmental Science; Michigan Technological University; Houghton, Michigan USA
- Biotechnology Research Center, Michigan Technological University, 1400 Townsend Drive, Houghton, MI 49931, USA
- Correspondence to: Victor Busov;
| | | | - Igor Yakovlev
- Norwegian Forest and Landscape Institute; Ås, Norway
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248
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Hikage T, Yamagishi N, Takahashi Y, Saitoh Y, Yoshikawa N, Tsutsumi KI. Allelic variants of the esterase gene W14/15 differentially regulate overwinter survival in perennial gentian (Gentiana L.). Mol Genet Genomics 2015; 291:989-97. [PMID: 26701352 DOI: 10.1007/s00438-015-1160-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 12/14/2015] [Indexed: 11/25/2022]
Abstract
Overwinter survival has to be under critical regulation in the lifecycle of herbaceous perennial plants. Gentians (Gentiana L.) maintain their perennial life style through producing dormant and freezing-tolerant overwinter buds (OWBs) to overcome cold winter. However, the mechanism acting on such an overwinter survival and the genes/proteins contributing to it have been poorly understood. Previously, we identified an OWB-enriched protein W14/15, a member of a group of α/β hydrolase fold superfamily that is implicated in regulation of hormonal action in plants. The W14/15 gene has more than ten variant types in Gentiana species. However, roles of the W14/15 gene in OWB survival and functional difference among those variants have been unclear. In the present study, we examined whether the W14/15 gene variants are involved in the mechanism acting on overwinter survival, by crossing experiments using cultivars carrying different W14/15 variant alleles and virus-induced gene silencing experiments. We found that particular types of the W14/15 variants (W15a types) contributed toward obtaining high ability of overwinter survival, while other types (W14b types) did not, or even interfered with the former type gene. This study demonstrates two findings; first, contribution of esterase genes to winter hardiness, and second, paired set or paired partner among the allelic variants determines the ability of overwinter survival.
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Affiliation(s)
- Takashi Hikage
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, 020-8550, Japan
- Hachimantai City Floricultural Research and Development Center, Hachimantai, Iwate, 028-7592, Japan
| | - Noriko Yamagishi
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, 020-8550, Japan
| | - Yui Takahashi
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate, 020-8550, Japan
| | - Yasushi Saitoh
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, 020-8550, Japan
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate, 020-8550, Japan
| | - Nobuyuki Yoshikawa
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, 020-8550, Japan
| | - Ken-Ichi Tsutsumi
- United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, 020-8550, Japan.
- Cryobiofrontier Research Center, Iwate University, Morioka, Iwate, 020-8550, Japan.
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249
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Zohner CM, Renner SS. Perception of photoperiod in individual buds of mature trees regulates leaf-out. THE NEW PHYTOLOGIST 2015; 208:1023-30. [PMID: 26096967 DOI: 10.1111/nph.13510] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 05/15/2015] [Indexed: 05/15/2023]
Abstract
Experimental data on the perception of day length and temperature in dormant temperate zone trees are surprisingly scarce. In order to investigate when and where these environmental signals are perceived, we carried out bagging experiments in which buds on branches of Fagus sylvatica, Aesculus hippocastanum and Picea abies trees were exposed to natural light increase or kept at constant 8-h days from December until June. Parallel experiments used twigs cut from the same trees, harvesting treated and control twigs seven times and then exposing them to 8- or 16-h days in a glasshouse. Under 8-h days, budburst in Fagus outdoors was delayed by 41 d and in Aesculus by 4 d; in Picea, day length had no effect. Buds on nearby branches reacted autonomously, and leaf primordia only reacted to light cues in late dormancy after accumulating warm days. Experiments applying different wavelength spectra and high-resolution spectrometry to buds indicate a phytochrome-mediated photoperiod control. By demonstrating local photoperiodic control of buds, revealing the time when these signals are perceived, and showing the interplay between photoperiod and chilling, this study contributes to improved modelling of the impact of climate warming on photosensitive species.
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Affiliation(s)
- Constantin M Zohner
- Systematic Botany and Mycology, Department of Biology, Munich University (LMU), 80638, Munich, Germany
| | - Susanne S Renner
- Systematic Botany and Mycology, Department of Biology, Munich University (LMU), 80638, Munich, Germany
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250
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Herrmann S, Recht S, Boenn M, Feldhahn L, Angay O, Fleischmann F, Tarkka MT, Grams TEE, Buscot F. Endogenous rhythmic growth in oak trees is regulated by internal clocks rather than resource availability. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:7113-27. [PMID: 26320242 PMCID: PMC4765786 DOI: 10.1093/jxb/erv408] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Common oak trees display endogenous rhythmic growth with alternating shoot and root flushes. To explore the mechanisms involved, microcuttings of the Quercus robur L. clone DF159 were used for (13)C/(15)N labelling in combination with RNA sequencing (RNASeq) transcript profiling of shoots and roots. The effect of plant internal resource availability on the rhythmic growth of the cuttings was tested through inoculation with the ectomycorrhizal fungus Piloderma croceum. Shoot and root flushes were related to parallel shifts in above- and below-ground C and, to a lesser extent, N allocation. Increased plant internal resource availability by P. croceum inoculation with enhanced plant growth affected neither the rhythmic growth nor the associated resource allocation patterns. Two shifts in transcript abundance were identified during root and shoot growth cessation, and most concerned genes were down-regulated. Inoculation with P. croceum suppressed these transcript shifts in roots, but not in shoots. To identify core processes governing the rhythmic growth, functions [Gene Ontology (GO) terms] of the genes differentially expressed during the growth cessation in both leaves and roots of non-inoculated plants and leaves of P. croceum-inoculated plants were examined. Besides genes related to resource acquisition and cell development, which might reflect rather than trigger rhythmic growth, genes involved in signalling and/or regulated by the circadian clock were identified. The results indicate that rhythmic growth involves dramatic oscillations in plant metabolism and gene regulation between below- and above-ground parts. Ectomycorrhizal symbiosis may play a previously unsuspected role in smoothing these oscillations without modifying the rhythmic growth pattern.
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Affiliation(s)
- S Herrmann
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany Department of Community Ecology, UFZ-Helmholtz Centre for Environmental Research,Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, D-04103 Leipzig, Germany
| | - S Recht
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany
| | - M Boenn
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany
| | - L Feldhahn
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany
| | - O Angay
- Section Pathology of Woody Plants, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, D-85354 Freising, Germany Ecophysiology of Plants, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, D-85354 Freising, Germany
| | - F Fleischmann
- Section Pathology of Woody Plants, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, D-85354 Freising, Germany
| | - M T Tarkka
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, D-04103 Leipzig, Germany
| | - T E E Grams
- Ecophysiology of Plants, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, D-85354 Freising, Germany
| | - F Buscot
- Department of Soil Ecology, UFZ-Helmholtz Centre for Environmental Research, Theodor-Lieser-Str. 4, D-06120 Halle/Saale, Germany German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, D-04103 Leipzig, Germany
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