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Genomewide and Enzymatic Analysis Reveals Efficient d-Galacturonic Acid Metabolism in the Basidiomycete Yeast Rhodosporidium toruloides. mSystems 2019; 4:4/6/e00389-19. [PMID: 31848309 PMCID: PMC6918025 DOI: 10.1128/msystems.00389-19] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Biorefining of renewable feedstocks is one of the most promising routes to replace fossil-based products. Since many common fermentation hosts, such as Saccharomyces cerevisiae, are naturally unable to convert many component plant cell wall polysaccharides, the identification of organisms with broad catabolism capabilities represents an opportunity to expand the range of substrates used in fermentation biorefinery approaches. The red basidiomycete yeast Rhodosporidium toruloides is a promising and robust host for lipid- and terpene-derived chemicals. Previous studies demonstrated assimilation of a range of substrates, from C5/C6 sugars to aromatic molecules similar to lignin monomers. In the current study, we analyzed the potential of R. toruloides to assimilate d-galacturonic acid, a major sugar in many pectin-rich agricultural waste streams, including sugar beet pulp and citrus peels. d-Galacturonic acid is not a preferred substrate for many fungi, but its metabolism was found to be on par with those of d-glucose and d-xylose in R. toruloides A genomewide analysis by combined transcriptome sequencing (RNA-seq) and RB-TDNA-seq revealed those genes with high relevance for fitness on d-galacturonic acid. While R. toruloides was found to utilize the nonphosphorylative catabolic pathway known from ascomycetes, the maximal velocities of several enzymes exceeded those previously reported. In addition, an efficient downstream glycerol catabolism and a novel transcription factor were found to be important for d-galacturonic acid utilization. These results set the basis for use of R. toruloides as a potential host for pectin-rich waste conversions and demonstrate its suitability as a model for metabolic studies with basidiomycetes.IMPORTANCE The switch from the traditional fossil-based industry to a green and sustainable bioeconomy demands the complete utilization of renewable feedstocks. Many currently used bioconversion hosts are unable to utilize major components of plant biomass, warranting the identification of microorganisms with broader catabolic capacity and characterization of their unique biochemical pathways. d-Galacturonic acid is a plant component of bioconversion interest and is the major backbone sugar of pectin, a plant cell wall polysaccharide abundant in soft and young plant tissues. The red basidiomycete and oleaginous yeast Rhodosporidium toruloides has been previously shown to utilize a range of sugars and aromatic molecules. Using state-of-the-art functional genomic methods and physiological and biochemical assays, we elucidated the molecular basis underlying the efficient metabolism of d-galacturonic acid. This study identified an efficient pathway for uronic acid conversion to guide future engineering efforts and represents the first detailed metabolic analysis of pectin metabolism in a basidiomycete fungus.
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202
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Mielke S, Gasperini D. Interplay between Plant Cell Walls and Jasmonate Production. PLANT & CELL PHYSIOLOGY 2019; 60:2629-2637. [PMID: 31241137 DOI: 10.1093/pcp/pcz119] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2019] [Accepted: 06/04/2019] [Indexed: 05/23/2023]
Abstract
Plant cell walls are sophisticated carbohydrate-rich structures representing the immediate contact surface with the extracellular environment, often serving as the first barrier against biotic and abiotic stresses. Notably, a variety of perturbations in plant cell walls result in upregulated jasmonate (JA) production, a phytohormone with essential roles in defense and growth responses. Hence, cell wall-derived signals can initiate intracellular JA-mediated responses and the elucidation of the underlying signaling pathways could provide novel insights into cell wall maintenance and remodeling, as well as advance our understanding on how is JA biosynthesis initiated. This Mini Review will describe current knowledge about cell wall-derived damage signals and their effects on JA biosynthesis, as well as provide future perspectives.
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Affiliation(s)
- Stefan Mielke
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Weinberg 3, Halle (Saale) 06120, Germany
| | - Debora Gasperini
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Weinberg 3, Halle (Saale) 06120, Germany
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203
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Collins PP, O'donoghue EM, Rebstock R, Tiffin HR, Sutherland PW, Schröder R, McAtee PA, Prakash R, Ireland HS, Johnston JW, Atkinson RG, Schaffer RJ, Hallett IC, Brummell DA. Cell type-specific gene expression underpins remodelling of cell wall pectin in exocarp and cortex during apple fruit development. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6085-6099. [PMID: 31408160 DOI: 10.1093/jxb/erz370] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Accepted: 08/09/2019] [Indexed: 06/10/2023]
Abstract
In apple (Malus×domestica) fruit, the different layers of the exocarp (cuticle, epidermis, and hypodermis) protect and maintain fruit integrity, and resist the turgor-driven expansion of the underlying thin-walled cortical cells during growth. Using in situ immunolocalization and size exclusion epitope detection chromatography, distinct cell type differences in cell wall composition in the exocarp were revealed during apple fruit development. Epidermal cell walls lacked pectic (1→4)-β-d-galactan (associated with rigidity), whereas linear (1→5)-α-l-arabinan (associated with flexibility) was exclusively present in the epidermal cell walls in expanding fruit and then appeared in all cell types during ripening. Branched (1→5)-α-l-arabinan was uniformly distributed between cell types. Laser capture microdissection and RNA sequencing (RNA-seq) were used to explore transcriptomic differences controlling cell type-specific wall modification. The RNA-seq data indicate that the control of cell wall composition is achieved through cell-specific gene expression of hydrolases. In epidermal cells, this results in the degradation of galactan side chains by possibly five β-galactosidases (BGAL2, BGAL7, BGAL10, BGAL11, and BGAL103) and debranching of arabinans by α-arabinofuranosidases AF1 and AF2. Together, these results demonstrate that flexibility and rigidity of the different cell layers in apple fruit during development and ripening are determined, at least in part, by the control of cell wall pectin remodelling.
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Affiliation(s)
- Patrick P Collins
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
- School of Biological Sciences, The University of Auckland, Auckland, New Zealand
| | | | - Ria Rebstock
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Heather R Tiffin
- PFR, Food Industry Science Centre, Palmerston North, New Zealand
| | - Paul W Sutherland
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Roswitha Schröder
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Peter A McAtee
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Roneel Prakash
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Hilary S Ireland
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | | | - Ross G Atkinson
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - Robert J Schaffer
- School of Biological Sciences, The University of Auckland, Auckland, New Zealand
- PFR, Motueka, New Zealand
| | - Ian C Hallett
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
| | - David A Brummell
- The New Zealand Institute for Plant and Food Research Limited (PFR), Mount Albert Research Centre, Auckland, New Zealand
- PFR, Food Industry Science Centre, Palmerston North, New Zealand
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204
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Kanungo A, Bag BP. Structural insights into the molecular mechanisms of pectinolytic enzymes. ACTA ACUST UNITED AC 2019. [DOI: 10.1007/s42485-019-00027-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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205
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Zhang S, He F, Chen X, Ding K. Isolation and structural characterization of a pectin from Lycium ruthenicum Murr and its anti-pancreatic ductal adenocarcinoma cell activity. Carbohydr Polym 2019; 223:115104. [DOI: 10.1016/j.carbpol.2019.115104] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 07/14/2019] [Accepted: 07/16/2019] [Indexed: 12/14/2022]
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206
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Pandey A, Khan MK, Hakki EE, Gezgin S, Hamurcu M. Combined Boron Toxicity and Salinity Stress-An Insight into Its Interaction in Plants. PLANTS (BASEL, SWITZERLAND) 2019; 8:E364. [PMID: 31547605 PMCID: PMC6843824 DOI: 10.3390/plants8100364] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/1970] [Revised: 09/11/2019] [Accepted: 09/17/2019] [Indexed: 12/11/2022]
Abstract
The continuously changing environment has intensified the occurrence of abiotic stress conditions. Individually, boron (B) toxicity and salinity stress are well recognized as severe stress conditions for plants. However, their coexistence in arid and semi-arid agricultural regions has shown ambiguous effects on plant growth and development. Few studies have reported that combined boron toxicity and high salinity stress have more damaging effects on plant growth than individual B and salt stress, while other studies have highlighted less damaging effects of the combined stress. Hence, it is interesting to understand the positive interaction of this combined stress so that it can be effectively employed for the improvement of crops that generally show the negative effects of this combined stress. In this review, we discussed the possible processes that occur in plants in response to this combined stress condition. We highly suggest that the combined B and salinity stress condition should be considered as a novel stress condition by researchers; hence, we recommend the name "BorSal" for this combined boron toxicity and high salinity state in the soil. Membrane-bound activities, mobility of ions, water transport, pH changes, transpiration, photosynthesis, antioxidant activities, and different molecular transporters are involved in the effects of BorSal interaction in plants. The discussed mechanisms indicate that the BorSal stress state should be studied in light of the involved physiological and molecular processes that occur after B and salt interaction in plants.
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Affiliation(s)
- Anamika Pandey
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Mohd Kamran Khan
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Erdogan Esref Hakki
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Sait Gezgin
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Mehmet Hamurcu
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
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207
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Matsumoto N, Takenaka Y, Wachananawat B, Kajiura H, Imai T, Ishimizu T. Rhamnogalacturonan I galactosyltransferase: Detection of enzyme activity and its hyperactivation. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 142:173-178. [PMID: 31299599 DOI: 10.1016/j.plaphy.2019.07.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2019] [Revised: 07/03/2019] [Accepted: 07/03/2019] [Indexed: 06/10/2023]
Abstract
Rhamnogalacturonan I (RG-I), one of the pectic components of the plant cell wall, is composed of a backbone of repeating disaccharide units of rhamnose and galacturonic acid, and side chains, such as galactans, arabinans, and arabinogalactans. The activity of RG-I galactosyltransferase, which transfers galactosyl residues to rhamnosyl residues in the RG-I backbone, has not been detected until now. Here, we detected galactosyltransferase activity in azuki bean epicotyls using fluorogenic RG-I oligosaccharide acceptors. This enzyme prefers oligosaccharides with a degree of polymerization more than 9. The enzyme activity was detected in the Golgi apparatus, which is the site of pectin synthesis. In vitro hyperactivation of this enzyme was also observed. Moreover, enzyme activity was increased up to 40-fold in the presence of cationic surfactants or polyelectrolytes.
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Affiliation(s)
- Naoki Matsumoto
- College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Yuto Takenaka
- Ritsumeikan Global Innovation Research Organization, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | | | - Hiroyuki Kajiura
- College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Tomoya Imai
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Takeshi Ishimizu
- College of Life Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan; Ritsumeikan Global Innovation Research Organization, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan.
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208
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Li C, Ma X, Huang X, Wang H, Wu H, Zhao M, Li J. Involvement of HD-ZIP I transcription factors LcHB2 and LcHB3 in fruitlet abscission by promoting transcription of genes related to the biosynthesis of ethylene and ABA in litchi. TREE PHYSIOLOGY 2019; 39:1600-1613. [PMID: 31222320 DOI: 10.1093/treephys/tpz071] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 05/07/2019] [Accepted: 06/11/2019] [Indexed: 05/28/2023]
Abstract
Abnormal fruitlet abscission is a limiting factor in the production of litchi, an economically important fruit in Southern Asia. Both ethylene and abscisic acid (ABA) induce organ abscission in plants. Although ACS/ACO and NCED genes are known to encode key enzymes required for ethylene and ABA biosynthesis, respectively, the transcriptional regulation of these genes is unclear in the process of plant organ shedding. Here, two polygalacturonase (PG) genes (LcPG1 and LcPG2) and two novel homeodomain-leucine zipper I transcription factors genes (LcHB2 and LcHB3) were identified as key genes associated with the fruitlet abscission in litchi. The expression of LcPG1 and LcPG2 was strongly associated with litchi fruitlet abscission, consistent with enhanced PG activity and reduced homogalacturonan content in fruitlet abscission zones (FAZs). The promoter activities of LcPG1/2 were enhanced by ethephon and ABA. In addition, the production of ethylene and ABA in fruitlets was significantly increased during fruit abscission. Consistently, expression of five genes (LcACO2, LcACO3, LcACS1, LcACS4 and LcACS7) related to ethylene biosynthesis and one gene (LcNCED3) related to ABA biosynthesis in FAZs were activated. Further, electrophoretic mobility shift assays and transient expression experiments demonstrated that both LcHB2 and LcHB3 could directly bind to the promoter of LcACO2/3, LcACS1/4/7 and LcNCED3 genes and activate their expression. Collectively, we propose that LcHB2/3 are involved in the litchi fruitlet abscission through positive regulation of ethylene and ABA biosynthesis.
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Affiliation(s)
- Caiqin Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xingshuai Ma
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Xuming Huang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Huicong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Hong Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
| | - Minglei Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Jianguo Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- Guangdong Litchi Engineering Research Center, College of Horticulture, South China Agricultural University, Guangzhou, China
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209
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Sabater C, Ferreira-Lazarte A, Montilla A, Corzo N. Enzymatic Production and Characterization of Pectic Oligosaccharides Derived from Citrus and Apple Pectins: A GC-MS Study Using Random Forests and Association Rule Learning. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:7435-7447. [PMID: 31244205 DOI: 10.1021/acs.jafc.9b00930] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Pectic oligosaccharides (POS) from citrus and apple pectin hydrolysis using ViscozymeL and Glucanex200G have been obtained. According to the results, maximum POS formation was achieved from citrus pectin after 30 min of hydrolysis with ViscozymeL, with a yield of 652 mg g-1 and average molecular mass ( Mw) of 0.8-2.5 kDa, while with Glucanex200G, the yield was 518 mg g-1 and Mw was 0.8-7.1 kDa. Digalacturonic and trigalacturonic acids were identified among other low Mw compounds as di- and tri-POS. In addition, differences in GC-MS spectra of all oligosaccharides found in the hydrolysates were studied by employing random forests and other algorithms to identify structural differences between the obtained POS, and high prediction rates were shown for new samples. Chemical structures were proposed for some influential m/ z ions, and 12 association rules that explain differences according to pectin and enzyme origin were built. This information could be used to establish structure-function relationships of POS.
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Affiliation(s)
- Carlos Sabater
- Institute of Food Science Research, CIAL (CSIC-UAM), CEI (UAM+CSIC) , C/Nicolás Cabrera 9 , Madrid 28049 , Spain
| | - Alvaro Ferreira-Lazarte
- Institute of Food Science Research, CIAL (CSIC-UAM), CEI (UAM+CSIC) , C/Nicolás Cabrera 9 , Madrid 28049 , Spain
| | - Antonia Montilla
- Institute of Food Science Research, CIAL (CSIC-UAM), CEI (UAM+CSIC) , C/Nicolás Cabrera 9 , Madrid 28049 , Spain
| | - Nieves Corzo
- Institute of Food Science Research, CIAL (CSIC-UAM), CEI (UAM+CSIC) , C/Nicolás Cabrera 9 , Madrid 28049 , Spain
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210
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Han W, Fan X, Teng L, Kaczurowski MJS, Zhang X, Xu D, Yin Y, Ye N. Identification, classification, and evolution of putative xylosyltransferases from algae. PROTOPLASMA 2019; 256:1119-1132. [PMID: 30941581 DOI: 10.1007/s00709-019-01358-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 02/15/2019] [Indexed: 05/28/2023]
Abstract
Xylosyltransferases (XylTs) play key roles in the biosynthesis of many different polysaccharides. These enzymes transfer D-xylose from UDP-xylose to substrate acceptors. In this study, we identified 30 XylTs from primary endosymbionts (green algae, red algae, and glaucophytes) and secondary or higher endosymbionts (brown algae, diatoms, Eustigmatophyceae, Pelagophyceae, and Cryptophyta). We performed comparative phylogenetic studies on key XylT subfamilies, and investigated the functional divergence of genes using RNA-Seq. Of the 30 XylTs, one β-1,4-XylT IRX14-related, one β-1,4 XylT IRX10L-related, and one xyloglucan 6-XylT 1-related gene were identified in the Charophyta, showing strong similarities to their land plant descendants. This implied the ancient occurrence of xylan and xyloglucan biosynthetic machineries in Charophyta. The other 27 XylTs were identified as UDP-D-xylose: L-fucose-α-1,3-D-XylT (FucXylT) type that specifically transferred D-xylose to fucose. We propose that FucXylTs originated from the last eukaryotic common ancestor, rather than being plant specific, because they are also distributed in Choanoflagellatea and Echinodermata. Considering the evidence from many aspects, we hypothesize that the FucXylTs likely participated in fucoidan biosynthesis in brown algae. We provide the first insights into the evolutionary history and functional divergence of FucXylT in algal biology.
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Affiliation(s)
- Wentao Han
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
- Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes,, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China
| | - Xiao Fan
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Linhong Teng
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
- College of Life Science, Dezhou University, Dezhou, 253023, China
| | | | - Xiaowen Zhang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Dong Xu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Yanbin Yin
- Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Naihao Ye
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China.
- Function Laboratory for Marine Fisheries Science and Food Production Processes,, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071, China.
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211
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Chhetri HB, Macaya-Sanz D, Kainer D, Biswal AK, Evans LM, Chen JG, Collins C, Hunt K, Mohanty SS, Rosenstiel T, Ryno D, Winkeler K, Yang X, Jacobson D, Mohnen D, Muchero W, Strauss SH, Tschaplinski TJ, Tuskan GA, DiFazio SP. Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits. THE NEW PHYTOLOGIST 2019; 223:293-309. [PMID: 30843213 DOI: 10.1111/nph.15777] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 02/22/2019] [Indexed: 05/08/2023]
Abstract
Genome-wide association studies (GWAS) have great promise for identifying the loci that contribute to adaptive variation, but the complex genetic architecture of many quantitative traits presents a substantial challenge. We measured 14 morphological and physiological traits and identified single nucleotide polymorphism (SNP)-phenotype associations in a Populus trichocarpa population distributed from California, USA to British Columbia, Canada. We used whole-genome resequencing data of 882 trees with more than 6.78 million SNPs, coupled with multitrait association to detect polymorphisms with potentially pleiotropic effects. Candidate genes were validated with functional data. Broad-sense heritability (H2 ) ranged from 0.30 to 0.56 for morphological traits and 0.08 to 0.36 for physiological traits. In total, 4 and 20 gene models were detected using the single-trait and multitrait association methods, respectively. Several of these associations were corroborated by additional lines of evidence, including co-expression networks, metabolite analyses, and direct confirmation of gene function through RNAi. Multitrait association identified many more significant associations than single-trait association, potentially revealing pleiotropic effects of individual genes. This approach can be particularly useful for challenging physiological traits such as water-use efficiency or complex traits such as leaf morphology, for which we were able to identify credible candidate genes by combining multitrait association with gene co-expression and co-methylation data.
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Affiliation(s)
- Hari B Chhetri
- Department of Biology, West Virginia University, Morgantown, WV, 26506, USA
| | - David Macaya-Sanz
- Department of Biology, West Virginia University, Morgantown, WV, 26506, USA
| | - David Kainer
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Ajaya K Biswal
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Luke M Evans
- Department of Biology, West Virginia University, Morgantown, WV, 26506, USA
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | | | - Kimberly Hunt
- ArborGen, Inc., 2011 Broadbank Ct., Ridgeville, SC, 29472, USA
| | - Sushree S Mohanty
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA
| | - Todd Rosenstiel
- Department of Biology, Portland State University, Portland, OR, 97207, USA
| | - David Ryno
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Kim Winkeler
- ArborGen, Inc., 2011 Broadbank Ct., Ridgeville, SC, 29472, USA
| | - Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Daniel Jacobson
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Debra Mohnen
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Steven H Strauss
- Department of Forest Ecosystems & Society, Oregon State University, Corvallis, OR, 97331, USA
| | | | - Gerald A Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Stephen P DiFazio
- Department of Biology, West Virginia University, Morgantown, WV, 26506, USA
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212
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Khan N, Fatima F, Haider MS, Shazadee H, Liu Z, Zheng T, Fang J. Genome-Wide Identification and Expression Profiling of the Polygalacturonase ( PG) and Pectin Methylesterase ( PME) Genes in Grapevine ( Vitis vinifera L.). Int J Mol Sci 2019; 20:ijms20133180. [PMID: 31261768 PMCID: PMC6651664 DOI: 10.3390/ijms20133180] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2019] [Revised: 06/21/2019] [Accepted: 06/27/2019] [Indexed: 01/07/2023] Open
Abstract
In pectin regulation, polygalacturonases (PGs) and pectin methylesterases (PMEs) are critical components in the transformation, disassembly network, and remodeling of plant primary cell walls. In the current study, we identified 36 PG and 47 PME genes using the available genomic resources of grapevine. Herein, we provide a comprehensive overview of PGs and PMEs, including phylogenetic and collinearity relationships, motif and gene structure compositions, gene duplications, principal component analysis, and expression profiling during developmental stages. Phylogenetic analysis of PGs and PMEs revealed similar domain composition patterns with Arabidopsis. The collinearity analysis showed high conservation and gene duplications with purifying selection. The type of duplications also varied in terms of gene numbers in PGs (10 dispersed, 1 proximal, 12 tandem, and 13 segmental, respectively) and PMEs (23 dispersed, 1 proximal, 16 tandem, and 7 segmental, respectively). The tissue-specific response of PG and PME genes based on the reported transcriptomic data exhibited diverged expression patterns in various organs during different developmental stages. Among PGs, VvPG8, VvPG10, VvPG13, VvPG17, VvPG18, VvPG19, VvPG20, VvPG22, and VvPG23 showed tissue- or organ-specific expression in majority of the tissues during development. Similarly, in PMEs, VvPME3, VvPME4, VvPME5, VvPME6, VvPME19, VvPME21, VvPME23, VvPME29, VvPME31, and VvPME32 suggested high tissue-specific response. The gene ontology (GO), Kyoto Encyclopedia of Genes and Genomics (KEGG) enrichment, and cis-elements prediction analysis also suggested the putative functions of PGs and PMEs in plant development, such as pectin and carbohydrate metabolism, and stress activities. Moreover, qRT-PCR validation of 32 PG and PME genes revealed their role in various organs of grapevines (i.e., root, stem, tendril, inflorescence, flesh, skins, and leaves). Therefore, these findings will lead to novel insights and encourage cutting-edge research on functional characterization of PGs and PMEs in fruit crop species.
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Affiliation(s)
- Nadeem Khan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Ministry of Science and Technology/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Fizza Fatima
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada
| | - Muhammad Salman Haider
- Key laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Hamna Shazadee
- College of Life Science, Nanjing Agricultural University, Nanjing 210095, China
| | - Zhongjie Liu
- Key laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Ting Zheng
- Key laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
| | - Jinggui Fang
- Key laboratory of Genetics and Fruit Development, College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
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213
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Calderan-Rodrigues MJ, Guimarães Fonseca J, de Moraes FE, Vaz Setem L, Carmanhanis Begossi A, Labate CA. Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa. Int J Mol Sci 2019; 20:E1975. [PMID: 31018495 PMCID: PMC6514655 DOI: 10.3390/ijms20081975] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 03/06/2019] [Accepted: 03/07/2019] [Indexed: 12/13/2022] Open
Abstract
Plant cell walls mostly comprise polysaccharides and proteins. The composition of monocots' primary cell walls differs from that of dicots walls with respect to the type of hemicelluloses, the reduction of pectin abundance and the presence of aromatic molecules. Cell wall proteins (CWPs) differ among plant species, and their distribution within functional classes varies according to cell types, organs, developmental stages and/or environmental conditions. In this review, we go deeper into the findings of cell wall proteomics in monocot species and make a comparative analysis of the CWPs identified, considering their predicted functions, the organs analyzed, the plant developmental stage and their possible use as targets for biofuel production. Arabidopsis thaliana CWPs were considered as a reference to allow comparisons among different monocots, i.e., Brachypodium distachyon, Saccharum spp. and Oryza sativa. Altogether, 1159 CWPs have been acknowledged, and specificities and similarities are discussed. In particular, a search for A. thaliana homologs of CWPs identified so far in monocots allows the definition of monocot CWPs characteristics. Finally, the analysis of monocot CWPs appears to be a powerful tool for identifying candidate proteins of interest for tailoring cell walls to increase biomass yield of transformation for second-generation biofuels production.
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Affiliation(s)
- Maria Juliana Calderan-Rodrigues
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
| | - Juliana Guimarães Fonseca
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
| | - Fabrício Edgar de Moraes
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
| | - Laís Vaz Setem
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
| | - Amanda Carmanhanis Begossi
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
| | - Carlos Alberto Labate
- Department of Genetics, Max Feffer Laboratory of Plant Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, CP 83, 13400-970 Piracicaba, SP, Brazil.
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214
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Pan C, Yang D, Zhao X, Jiao C, Yan Y, Lamin-Samu AT, Wang Q, Xu X, Fei Z, Lu G. Tomato stigma exsertion induced by high temperature is associated with the jasmonate signalling pathway. PLANT, CELL & ENVIRONMENT 2019; 42:1205-1221. [PMID: 30203844 DOI: 10.1111/pce.13444] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Revised: 09/05/2018] [Accepted: 09/06/2018] [Indexed: 05/24/2023]
Abstract
High temperature (HT) is becoming an increasingly serious factor in limiting crop production with global climate change. During hot seasons, owing to prevailing HT, cultivated tomatoes are prone to exhibiting stigma exsertion, which hampers pollination and causes fruit set failure. However, the underlying regulatory mechanisms of the HT-induced stigma exsertion remain largely unknown. Here, we demonstrate that stigma exsertion induced by HT in cultivated tomato is caused by more seriously shortened stamens than pistils, which is different from the stigma exsertion observed in wild tomato species. Under the HT condition, the different responses of pectin, sugar, expansin, and cyclin cause cell wall remodelling and differentially localized cell division and selective cell enlargement, which further determine the lengths of stamens and pistils. In addition, auxin and jasmonate (JA) are implicated in regulating cell division and cell expansion in stamens and pistils, and exogenous JA instead of auxin treatment can effectively rescue tomato stigma exsertion through regulating the JA/COI1 signalling pathway. Our findings provide a better understanding of stigma exsertions under the HT condition in tomato and uncover a new function of JA in improving plant abiotic stress tolerance.
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Affiliation(s)
- Changtian Pan
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Dandan Yang
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Xiaolin Zhao
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Chen Jiao
- Boyce Thompson Institute, Cornell University, Ithaca, New York, USA
| | - Yanqiu Yan
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | | | - Qiaomei Wang
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Xiangyang Xu
- College of Horticulture, Northeast Agricultural University, Harbin, China
| | - Zhangjun Fei
- Boyce Thompson Institute, Cornell University, Ithaca, New York, USA
- USDA Robert W. Holley Center for Agriculture and Health, Ithaca, New York, USA
| | - Gang Lu
- Department of Horticulture, Zhejiang University, Hangzhou, China
- Key Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Ministry of Agricultural, Zhejiang University, Hangzhou, China
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215
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Francin-Allami M, Alvarado C, Daniel S, Geairon A, Saulnier L, Guillon F. Spatial and temporal distribution of cell wall polysaccharides during grain development of Brachypodium distachyon. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 280:367-382. [PMID: 30824016 DOI: 10.1016/j.plantsci.2018.12.018] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 12/14/2018] [Accepted: 12/15/2018] [Indexed: 06/09/2023]
Abstract
Brachypodium distachyon (Brachypodium) is now well considered as being a suitable plant model for studying temperate cereal crops. Its cell walls are phylogenetically intermediate between rice and poaceae, with a greater proximity to these latter. By microscopic and biochemical approaches, this work gives an overview of the temporal and spatial distribution of cell wall polysaccharides in the grain of Brachypodium from the end of the cellularization step to the maturation of grain. Variation in arabinoxylan chemical structure and distribution were demonstrated according to development and different grain tissues. In particular, the kinetic of arabinoxylan feruloylation was shown occuring later in the aleurone layers compared to storage endosperm. Mixed linked β-glucan was detected in whole the tissues of Brachypodium grain even at late stage of development. Cellulose was found in both the storage endosperm and the outer layers. Homogalacturonan and rhamnogalacturonan I epitopes were differentially distributed within the grain tissues. LM5 galactan epitope was restricted to the aleurone layers contrary to LM6 arabinan epitope which was detected in the whole endosperm. A massive deposition of highly methylated homogalacturonans in vesicular bodies was observed underneath the cell wall of the testa t2 layer at early stage of development. At maturity, low-methylated homogalacturonans totally fulfilled the lumen of the t2 cell layer, suggesting pectin remodeling during grain development. Xyloglucans were only detected in the cuticle above the testa early in the development of the grain while feruloylated arabinoxylans were preferentially deposited into the cell wall of t1 layer. Indeed, the circumscribed distribution of some of the cell wall polysaccharides raises questions about their role in grain development and physiology.
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Affiliation(s)
| | - Camille Alvarado
- INRA, UR 1268 Biopolymères Interactions Assemblages, 44000, Nantes, France
| | - Sylviane Daniel
- INRA, UR 1268 Biopolymères Interactions Assemblages, 44000, Nantes, France
| | - Audrey Geairon
- INRA, UR 1268 Biopolymères Interactions Assemblages, 44000, Nantes, France
| | - Luc Saulnier
- INRA, UR 1268 Biopolymères Interactions Assemblages, 44000, Nantes, France
| | - Fabienne Guillon
- INRA, UR 1268 Biopolymères Interactions Assemblages, 44000, Nantes, France
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216
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Montecchiarini ML, Margarit E, Morales L, Rivadeneira MF, Bello F, Gollán A, Vázquez D, Podestá FE, Tripodi KEJ. Proteomic and metabolomic approaches unveil relevant biochemical changes in carbohydrate and cell wall metabolisms of two blueberry (Vaccinium corymbosum) varieties with different quality attributes. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 136:230-244. [PMID: 30708258 DOI: 10.1016/j.plaphy.2018.12.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 12/13/2018] [Accepted: 12/19/2018] [Indexed: 06/09/2023]
Abstract
Quality maintenance in rapidly decaying fruit such as blueberries (Vaccinium corymbosum) is of essential importance to guarantee the economic success of the crop. Fruit quality is a multifaceted subject that encompasses flavor, aroma, visual and physical issues as main factors. In this paper we report an ample characterization of different biochemical and physical aspects in two varieties (O'Neal and Emerald) of blueberries that differ in firmness, aspect, flavor and harvesting times, at two different phenological stages (fruit set vs. ripe), with the intention of unveiling how the metabolic signature of each contributes to their contrasting quality. To this effect a metabolomic, ionomic and proteomic approach was selected. The results presented here show marked differences in several variables at the two stages and between varieties. Emerald is an early variety with a large, good taste and firm fruit, while O'Neal is soft, medium sized and very sweet. Proteomic data comparison between both cultivars showed that, at fruit set, processes related with the response to inorganic compounds and small molecule metabolisms are relevant in both varieties. However, solute accumulation (mainly amino acids and organic acids), enzymes related with C: N balance, water transport and cell wall recycling are enhanced in Emerald. In ripe fruit, Emerald showed an enrichment of proteins associated with TCA, nitrogen, small molecules and cell wall in muro recycling processes, while mannitol and fatty acid metabolism were enhanced in the soft variety. The measured variation in metabolite levels gave strong support to the precedent results. This study suggests that at fruit set, a composite scenario of active metabolic recycling of the cell wall, improved C: N balance and solute accumulation give place to a more efficient carbon and water resource management. During the ripe stage, an increased and efficient in muro and metabolic recycling of the cell wall, added to enhanced inositol and secondary metabolism may be responsible for a best turgor conservation in Emerald. These findings may yield clues for improvements in fertilization practices, as well as to assist the guided development of new varieties based on biochemical quality.
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Affiliation(s)
- M L Montecchiarini
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Santa Fe, Argentina
| | - E Margarit
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Santa Fe, Argentina
| | - L Morales
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Santa Fe, Argentina
| | - M F Rivadeneira
- Estación Experimental Concordia, Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Yuquerí, 3200, Concordia, Entre Ríos, Argentina
| | - F Bello
- Estación Experimental Concordia, Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Yuquerí, 3200, Concordia, Entre Ríos, Argentina
| | - A Gollán
- Estación Experimental Concordia, Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Yuquerí, 3200, Concordia, Entre Ríos, Argentina
| | - D Vázquez
- Estación Experimental Concordia, Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Yuquerí, 3200, Concordia, Entre Ríos, Argentina
| | - F E Podestá
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Santa Fe, Argentina.
| | - K E J Tripodi
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, 2000, Rosario, Santa Fe, Argentina.
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217
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Wang M, Xu Z, Ahmed RI, Wang Y, Hu R, Zhou G, Kong Y. Tubby-like Protein 2 regulates homogalacturonan biosynthesis in Arabidopsis seed coat mucilage. PLANT MOLECULAR BIOLOGY 2019; 99:421-436. [PMID: 30707395 DOI: 10.1007/s11103-019-00827-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2018] [Accepted: 01/19/2019] [Indexed: 06/09/2023]
Abstract
A possible transcription factor TLP2 was identified to be involved in the regulation of HG biosynthesis in Arabidopsis seed mucilage. TLP2 can translocate into nucleus from plasma membrane by interacting with NF-YC3. The discovery of TLP2 gene function can further fulfill the regulatory network of pectin biosynthesis in Arabidopsis thaliana. Arabidopsis seed coat mucilage is an excellent model system to study the biosynthesis, function and regulation of pectin. Rhamnogalacturonan I (RG-I) and homogalacturonan (HG) are the major polysaccharides constituent of the Arabidopsis seed coat mucilage. Here, we identified a Tubby-like gene, Tubby-like protein 2 (TLP2), which was up-regulated in developing siliques when mucilage began to be produced. Ruthenium red (RR) staining of the seeds showed defective mucilage of tlp2-1 mutant after vigorous shaking compared to wild type (WT). Monosaccharide composition analysis revealed that the amount of total sugars and galacturonic acid (GalA) decreased significantly in the adherent mucilage (AM) of tlp2-1 mutant. Immunolabelling and dot immunoblotting analysis showed that unesterified HG decreased in the tlp2-1 mutant. Furthermore, TLP2 can translocate into nucleus by interacting with Nuclear Factor Y subunit C3 (NF-YC3) to function as a transcription factor. RNA-sequence and transactivation assays revealed that TLP2 could activate UDP-glucose 4-epimerase 1 (UGE1). In all, it is concluded that TLP2 could regulate the biosynthesis of HG possibly through the positive activation of UGE1.
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Affiliation(s)
- Meng Wang
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
- Graduate School of Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Zongchang Xu
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
| | - Rana Imtiaz Ahmed
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China
- Graduate School of Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Yiping Wang
- Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
- Graduate School of University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ruibo Hu
- Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Gongke Zhou
- Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Yingzhen Kong
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
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218
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Wierzbicki MP, Maloney V, Mizrachi E, Myburg AA. Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing. FRONTIERS IN PLANT SCIENCE 2019; 10:176. [PMID: 30858858 PMCID: PMC6397879 DOI: 10.3389/fpls.2019.00176] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2018] [Accepted: 02/04/2019] [Indexed: 05/14/2023]
Abstract
Lignocellulosic biomass, encompassing cellulose, lignin and hemicellulose in plant secondary cell walls (SCWs), is the most abundant source of renewable materials on earth. Currently, fast-growing woody dicots such as Eucalyptus and Populus trees are major lignocellulosic (wood fiber) feedstocks for bioproducts such as pulp, paper, cellulose, textiles, bioplastics and other biomaterials. Processing wood for these products entails separating the biomass into its three main components as efficiently as possible without compromising yield. Glucuronoxylan (xylan), the main hemicellulose present in the SCWs of hardwood trees carries chemical modifications that are associated with SCW composition and ultrastructure, and affect the recalcitrance of woody biomass to industrial processing. In this review we highlight the importance of xylan properties for industrial wood fiber processing and how gaining a greater understanding of xylan biosynthesis, specifically xylan modification, could yield novel biotechnology approaches to reduce recalcitrance or introduce novel processing traits. Altering xylan modification patterns has recently become a focus of plant SCW studies due to early findings that altered modification patterns can yield beneficial biomass processing traits. Additionally, it has been noted that plants with altered xylan composition display metabolic differences linked to changes in precursor usage. We explore the possibility of using systems biology and systems genetics approaches to gain insight into the coordination of SCW formation with other interdependent biological processes. Acetyl-CoA, s-adenosylmethionine and nucleotide sugars are precursors needed for xylan modification, however, the pathways which produce metabolic pools during different stages of fiber cell wall formation still have to be identified and their co-regulation during SCW formation elucidated. The crucial dependence on precursor metabolism provides an opportunity to alter xylan modification patterns through metabolic engineering of one or more of these interdependent pathways. The complexity of xylan biosynthesis and modification is currently a stumbling point, but it may provide new avenues for woody biomass engineering that are not possible for other biopolymers.
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Affiliation(s)
| | | | | | - Alexander A. Myburg
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
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219
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Sabater C, Olano A, Corzo N, Montilla A. GC–MS characterisation of novel artichoke (Cynara scolymus) pectic-oligosaccharides mixtures by the application of machine learning algorithms and competitive fragmentation modelling. Carbohydr Polym 2019; 205:513-523. [DOI: 10.1016/j.carbpol.2018.10.054] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Revised: 10/11/2018] [Accepted: 10/18/2018] [Indexed: 01/13/2023]
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220
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Li M, Yoo CG, Pu Y, Biswal AK, Tolbert AK, Mohnen D, Ragauskas AJ. Downregulation of pectin biosynthesis gene GAUT4 leads to reduced ferulate and lignin-carbohydrate cross-linking in switchgrass. Commun Biol 2019; 2:22. [PMID: 30675520 PMCID: PMC6336719 DOI: 10.1038/s42003-018-0265-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Accepted: 12/07/2018] [Indexed: 11/09/2022] Open
Abstract
Knockdown (KD) expression of GAlactUronosylTransferase 4 (GAUT4) in switchgrass improves sugar yield and ethanol production from the biomass. The reduced recalcitrance of GAUT4-KD transgenic biomass is associated with reduced cell wall pectic homogalacturonan and rhamnogalacturonan II content and cross-linking, and the associated increases in accessibility of cellulose to enzymatic deconstruction. To further probe the molecular basis for the reduced recalcitrance of GAUT4-KD biomass, potential recalcitrance-related factors including the physicochemical properties of lignin and hemicellulose are investigated. We show that the transgenic switchgrass have a lower abundance of ferulate and lignin-carbohydrate complex cross-linkages, reduced amounts of residual arabinan and xylan in lignin-enriched fractions after enzymatic hydrolysis, and greater coalescence and migration of lignin after hydrothermal pretreatment in comparison to the wild-type switchgrass control. The results reveal the roles of both decreased lignin-polymer and pectin cross-links in the reduction of recalcitrance in PvGAUT4-KD switchgrass.
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Affiliation(s)
- Mi Li
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Joint Institute for Biological Sciences, Biosciences Division, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
| | - Chang Geun Yoo
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Joint Institute for Biological Sciences, Biosciences Division, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Center for Bioenergy Innovation, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Present Address: Department of Paper and Bioprocess Engineering, State University of New York College of Environmental Science and Forestry, Syracuse, NY 13210-2781 USA
| | - Yunqiao Pu
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Joint Institute for Biological Sciences, Biosciences Division, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Center for Bioenergy Innovation, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
| | - Ajaya K. Biswal
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Center for Bioenergy Innovation, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Department of Biochemistry and Molecular Biology and Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
| | - Allison K. Tolbert
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- School of Chemistry and Biochemistry and Renewable Bioproducts Institute, Georgia Institute of Technology, 500 10th Street NW, Atlanta, GA 30332 USA
| | - Debra Mohnen
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Center for Bioenergy Innovation, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Department of Biochemistry and Molecular Biology and Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 USA
| | - Arthur J. Ragauskas
- BioEnergy Science Center, Oak Ridge National Laboratory (ORNL), 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Joint Institute for Biological Sciences, Biosciences Division, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Center for Bioenergy Innovation, ORNL, 1 Bethel Valley Road, Oak Ridge, TN 37831 USA
- Department of Chemical and Biomolecular Engineering, University of Tennessee, 1512 Middle Drive, Knoxville, TN 37996 USA
- Department of Forestry, Wildlife, and Fisheries, Center for Renewable Carbon, University of Tennessee Institute of Agriculture, 2506 Jacob Drive, Knoxville, TN 37996 USA
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221
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Cheong MS, Lee DY, Seo KH, Choi GH, Song YH, Park KH, Kim JH. Phenylephrine, a small molecule, inhibits pectin methylesterases. Biochem Biophys Res Commun 2019; 508:320-325. [DOI: 10.1016/j.bbrc.2018.11.117] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 11/19/2018] [Indexed: 11/25/2022]
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222
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Corral-Martínez P, Driouich A, Seguí-Simarro JM. Dynamic Changes in Arabinogalactan-Protein, Pectin, Xyloglucan and Xylan Composition of the Cell Wall During Microspore Embryogenesis in Brassica napus. FRONTIERS IN PLANT SCIENCE 2019; 10:332. [PMID: 30984213 PMCID: PMC6447685 DOI: 10.3389/fpls.2019.00332] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Accepted: 03/04/2019] [Indexed: 05/05/2023]
Abstract
Microspore embryogenesis is a manifestation of plant cell totipotency whereby new cell walls are formed as a consequence of the embryogenic switch. In particular, the callose-rich subintinal layer created immediately upon induction of embryogenesis was recently related to protection against stress. However, little is currently known about the functional significance of other compositional changes undergone by the walls of embryogenic microspores. We characterized these changes in Brassica napus at different stages during induction of embryogenic microspores and development of microspore-derived embryos (MDEs) by using a series of monoclonal antibodies specific for cell wall components, including arabinogalactan-proteins (AGPs), pectins, xyloglucan and xylan. We used JIM13, JIM8, JIM14 and JIM16 for AGPs, CCRC-M13, LM5, LM6, JIM7, JIM5 and LM7 for pectins, CCRC-M1 and LM15 for xyloglucan, and LM11 for xylan. By transmission electron microscopy and quantification of immunogold labeling on high-pressure frozen, freeze-substituted samples, we profiled the changes in cell wall ultrastructure and composition at the different stages of microspore embryogenesis. As a reference to compare with, we also studied in vivo microspores and maturing pollen grains. We showed that the cell wall of embryogenic microspores is a highly dynamic structure whose architecture, arrangement and composition changes dramatically as microspores undergo embryogenesis and then transform into MDEs. Upon induction, the composition of the preexisting microspore intine walls is remodeled, and unusual walls with a unique structure and composition are formed. Changes in AGP composition were related to developmental fate. In particular, AGPs containing the JIM13 epitope were massively excreted into the cell apoplast, and appeared associated to cell totipotency. According to the ultrastructure and the pectin and xyloglucan composition of these walls, we deduced that commitment to embryogenesis induces the formation of fragile, plastic and deformable cell walls, which allow for cell expansion and microspore growth. We also showed that these special walls are transient, since cell wall composition in microspore-derived embryos was completely different. Thus, once adopted the embryogenic developmental pathway and far from the effects of heat shock exposure, cell wall biosynthesis would approach the structure, composition and properties of conventional cell walls.
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Affiliation(s)
- Patricia Corral-Martínez
- COMAV – Universitat Politècnica de València, Ciudad Politécnica de la Innovación, Valencia, Spain
- *Correspondence: Patricia Corral-Martínez, Jose M. Seguí-Simarro,
| | - Azeddine Driouich
- Laboratoire Glycobiologie et Matrice Extracellulaire Végétale, UPRES-EA 4358, Fédération de Recherche Normandie-Végétal – FED 4277, Université de Rouen Normandie, Mont-Saint-Aignan, France
| | - Jose M. Seguí-Simarro
- COMAV – Universitat Politècnica de València, Ciudad Politécnica de la Innovación, Valencia, Spain
- *Correspondence: Patricia Corral-Martínez, Jose M. Seguí-Simarro,
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Structural characterization of rhamnogalacturonan domains from Panax ginseng C. A. Meyer. Carbohydr Polym 2019; 203:119-127. [DOI: 10.1016/j.carbpol.2018.09.045] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2018] [Revised: 09/15/2018] [Accepted: 09/18/2018] [Indexed: 11/22/2022]
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224
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da Costa RMF, Pattathil S, Avci U, Winters A, Hahn MG, Bosch M. Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:85. [PMID: 31011368 PMCID: PMC6463665 DOI: 10.1186/s13068-019-1426-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Accepted: 04/05/2019] [Indexed: 05/07/2023]
Abstract
BACKGROUND Lignocellulosic biomass from dedicated energy crops such as Miscanthus spp. is an important tool to combat anthropogenic climate change. However, we still do not exactly understand the sources of cell wall recalcitrance to deconstruction, which hinders the efficient biorefining of plant biomass into biofuels and bioproducts. RESULTS We combined detailed phenotyping, correlation studies and discriminant analyses, to identify key significantly distinct variables between miscanthus organs, genotypes and most importantly, between saccharification performances. Furthermore, for the first time in an energy crop, normalised total quantification of specific cell wall glycan epitopes is reported and correlated with saccharification. CONCLUSIONS In stems, lignin has the greatest impact on recalcitrance. However, in leaves, matrix glycans and their decorations have determinant effects, highlighting the importance of biomass fine structures, in addition to more commonly described cell wall compositional features. The results of our interrogation of the miscanthus cell wall promote the concept that desirable cell wall traits for increased biomass quality are highly dependent on the target biorefining products. Thus, for the development of biorefining ideotypes, instead of a generalist miscanthus variety, more realistic and valuable approaches may come from defining a collection of specialised cultivars, adapted to specific conditions and purposes.
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Affiliation(s)
- Ricardo M. F. da Costa
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE UK
- Present Address: Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - Sivakumar Pattathil
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- Present Address: Mascoma LLC (Lallemand, Inc.), 67 Etna Road, Lebanon, NH 03766 USA
| | - Utku Avci
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- Present Address: Faculty of Engineering, Bioengineering Department, Recep Tayyip Erdogan University, 53100 Rize, Turkey
| | - Ana Winters
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE UK
| | - Michael G. Hahn
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd., Athens, GA 30602-4712 USA
- DOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, TN 37831 USA
| | - Maurice Bosch
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Plas Gogerddan, Aberystwyth, Ceredigion, SY23 3EE UK
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225
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Dehors J, Mareck A, Kiefer-Meyer MC, Menu-Bouaouiche L, Lehner A, Mollet JC. Evolution of Cell Wall Polymers in Tip-Growing Land Plant Gametophytes: Composition, Distribution, Functional Aspects and Their Remodeling. FRONTIERS IN PLANT SCIENCE 2019; 10:441. [PMID: 31057570 PMCID: PMC6482432 DOI: 10.3389/fpls.2019.00441] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 03/22/2019] [Indexed: 05/22/2023]
Abstract
During evolution of land plants, the first colonizing species presented leafy-dominant gametophytes, found in non-vascular plants (bryophytes). Today, bryophytes include liverworts, mosses, and hornworts. In the first seedless vascular plants (lycophytes), the sporophytic stage of life started to be predominant. In the seed producing plants, gymnosperms and angiosperms , the gametophytic stage is restricted to reproduction. In mosses and ferns, the haploid spores germinate and form a protonema, which develops into a leafy gametophyte producing rhizoids for anchorage, water and nutrient uptakes. The basal gymnosperms (cycads and Ginkgo) reproduce by zooidogamy. Their pollen grains develop a multi-branched pollen tube that penetrates the nucellus and releases flagellated sperm cells that swim to the egg cell. The pollen grain of other gymnosperms (conifers and gnetophytes) as well as angiosperms germinates and produces a pollen tube that directly delivers the sperm cells to the ovule (siphonogamy). These different gametophytes, which are short or long-lived structures, share a common tip-growing mode of cell expansion. Tip-growth requires a massive cell wall deposition to promote cell elongation, but also a tight spatial and temporal control of the cell wall remodeling in order to modulate the mechanical properties of the cell wall. The growth rate of these cells is very variable depending on the structure and the species, ranging from very slow (protonemata, rhizoids, and some gymnosperm pollen tubes), to a slow to fast-growth in other gymnosperms and angiosperms. In addition, the structural diversity of the female counterparts in angiosperms (dry, semi-dry vs wet stigmas, short vs long, solid vs hollow styles) will impact the speed and efficiency of sperm delivery. As the evolution and diversity of the cell wall polysaccharides accompanied the diversification of cell wall structural proteins and remodeling enzymes, this review focuses on our current knowledge on the biochemistry, the distribution and remodeling of the main cell wall polymers (including cellulose, hemicelluloses, pectins, callose, arabinogalactan-proteins and extensins), during the tip-expansion of gametophytes from bryophytes, pteridophytes (lycophytes and monilophytes), gymnosperms and the monocot and eudicot angiosperms.
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226
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Simon C, Lion C, Spriet C, Baldacci‐Cresp F, Hawkins S, Biot C. One, Two, Three: A Bioorthogonal Triple Labelling Strategy for Studying the Dynamics of Plant Cell Wall Formation In Vivo. Angew Chem Int Ed Engl 2018; 57:16665-16671. [DOI: 10.1002/anie.201808493] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2018] [Revised: 09/29/2018] [Indexed: 11/09/2022]
Affiliation(s)
- Clemence Simon
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Cedric Lion
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Corentin Spriet
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Fabien Baldacci‐Cresp
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Simon Hawkins
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Christophe Biot
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
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227
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Simon C, Lion C, Spriet C, Baldacci‐Cresp F, Hawkins S, Biot C. One, Two, Three: A Bioorthogonal Triple Labelling Strategy for Studying the Dynamics of Plant Cell Wall Formation In Vivo. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201808493] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Clemence Simon
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Cedric Lion
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Corentin Spriet
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Fabien Baldacci‐Cresp
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Simon Hawkins
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
| | - Christophe Biot
- Université de LilleCNRS, UMR 8576, UGSF—Unité de Glycobiologie Structurale et Fonctionnelle 59000 Lille France
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228
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Sechet J, Htwe S, Urbanowicz B, Agyeman A, Feng W, Ishikawa T, Colomes M, Kumar KS, Kawai‐Yamada M, Dinneny JR, O'Neill MA, Mortimer JC. Suppression of Arabidopsis GGLT1 affects growth by reducing the L-galactose content and borate cross-linking of rhamnogalacturonan-II. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 96:1036-1050. [PMID: 30203879 PMCID: PMC6263843 DOI: 10.1111/tpj.14088] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 08/14/2018] [Accepted: 08/20/2018] [Indexed: 05/16/2023]
Abstract
Boron is a micronutrient that is required for the normal growth and development of vascular plants, but its precise functions remain a subject of debate. One established role for boron is in the cell wall where it forms a diester cross-link between two monomers of the low-abundance pectic polysaccharide rhamnogalacturonan-II (RG-II). The inability of RG-II to properly assemble into a dimer results in the formation of cell walls with abnormal biochemical and biomechanical properties and has a severe impact on plant productivity. Here we describe the effects on RG-II structure and cross-linking and on the growth of plants in which the expression of a GDP-sugar transporter (GONST3/GGLT1) has been reduced. In the GGLT1-silenced plants the amount of L-galactose in side-chain A of RG-II is reduced by up to 50%. This leads to a reduction in the extent of RG-II cross-linking in the cell walls as well as a reduction in the stability of the dimer in the presence of calcium chelators. The silenced plants have a dwarf phenotype, which is rescued by growth in the presence of increased amounts of boric acid. Similar to the mur1 mutant, which also disrupts RG-II cross-linking, GGLT1-silenced plants display a loss of cell wall integrity under salt stress. We conclude that GGLT1 is probably the primary Golgi GDP-L-galactose transporter, and provides GDP-L-galactose for RG-II biosynthesis. We propose that the L-galactose residue is critical for RG-II dimerization and for the stability of the borate cross-link.
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Affiliation(s)
- Julien Sechet
- Joint BioEnergy InstituteEmeryvilleCA94608USA
- Biosciences AreaLawrence Berkeley National LaboratoryBerkeleyCA94720USA
- Present address:
INRAVersailles78000France
| | - Soe Htwe
- Joint BioEnergy InstituteEmeryvilleCA94608USA
- Biosciences AreaLawrence Berkeley National LaboratoryBerkeleyCA94720USA
| | - Breeanna Urbanowicz
- Complex Carbohydrate Research CenterThe University of GeorgiaAthensGA30602USA
| | - Abigail Agyeman
- Complex Carbohydrate Research CenterThe University of GeorgiaAthensGA30602USA
- Present address:
School of PharmacySouth UniversitySavannahGA31406USA
| | - Wei Feng
- Department of Plant BiologyCarnegie Institute for ScienceStanfordCA94305USA
| | - Toshiki Ishikawa
- Graduate School of Science and EngineeringSaitama UniversitySaitama338‐8570Japan
| | - Marianne Colomes
- Joint BioEnergy InstituteEmeryvilleCA94608USA
- Biosciences AreaLawrence Berkeley National LaboratoryBerkeleyCA94720USA
- Present address:
NutribioParis75440France
| | - Kavitha Satish Kumar
- Joint BioEnergy InstituteEmeryvilleCA94608USA
- Biosciences AreaLawrence Berkeley National LaboratoryBerkeleyCA94720USA
| | - Maki Kawai‐Yamada
- Graduate School of Science and EngineeringSaitama UniversitySaitama338‐8570Japan
| | - José R. Dinneny
- Department of Plant BiologyCarnegie Institute for ScienceStanfordCA94305USA
- Department of BiologyStanford UniversityStanfordCA94305USA
| | - Malcolm A. O'Neill
- Complex Carbohydrate Research CenterThe University of GeorgiaAthensGA30602USA
| | - Jenny C. Mortimer
- Joint BioEnergy InstituteEmeryvilleCA94608USA
- Biosciences AreaLawrence Berkeley National LaboratoryBerkeleyCA94720USA
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229
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Ebert B, Birdseye D, Liwanag AJM, Laursen T, Rennie EA, Guo X, Catena M, Rautengarten C, Stonebloom SH, Gluza P, Pidatala VR, Andersen MCF, Cheetamun R, Mortimer JC, Heazlewood JL, Bacic A, Clausen MH, Willats WGT, Scheller HV. The Three Members of the Arabidopsis Glycosyltransferase Family 92 are Functional β-1,4-Galactan Synthases. PLANT & CELL PHYSIOLOGY 2018; 59:2624-2636. [PMID: 30184190 DOI: 10.1093/pcp/pcy180] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 08/31/2018] [Indexed: 05/18/2023]
Abstract
Pectin is a major component of primary cell walls and performs a plethora of functions crucial for plant growth, development and plant-defense responses. Despite the importance of pectic polysaccharides their biosynthesis is poorly understood. Several genes have been implicated in pectin biosynthesis by mutant analysis, but biochemical activity has been shown for very few. We used reverse genetics and biochemical analysis to study members of Glycosyltransferase Family 92 (GT92) in Arabidopsis thaliana. Biochemical analysis gave detailed insight into the properties of GALS1 (Galactan synthase 1) and showed galactan synthase activity of GALS2 and GALS3. All proteins are responsible for adding galactose onto existing galactose residues attached to the rhamnogalacturonan-I (RG-I) backbone. Significant GALS activity was observed with galactopentaose as acceptor but longer acceptors are favored. Overexpression of the GALS proteins in Arabidopsis resulted in accumulation of unbranched β-1, 4-galactan. Plants in which all three genes were inactivated had no detectable β-1, 4-galactan, and surprisingly these plants exhibited no obvious developmental phenotypes under standard growth conditions. RG-I in the triple mutants retained branching indicating that the initial Gal substitutions on the RG-I backbone are added by enzymes different from GALS.
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Affiliation(s)
- Berit Ebert
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
- School of BioSciences, The University of Melbourne, Victoria, Australia
| | - Devon Birdseye
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - April J M Liwanag
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Tomas Laursen
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Emilie A Rennie
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Xiaoyuan Guo
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Michela Catena
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Carsten Rautengarten
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- School of BioSciences, The University of Melbourne, Victoria, Australia
| | - Solomon H Stonebloom
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Pawel Gluza
- School of BioSciences, The University of Melbourne, Victoria, Australia
| | - Venkataramana R Pidatala
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Mathias C F Andersen
- Center for Nanomedicine and Theranostics, Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Roshan Cheetamun
- ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria, Australia
| | - Jenny C Mortimer
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | - Antony Bacic
- ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Victoria, Australia
| | - Mads H Clausen
- Center for Nanomedicine and Theranostics, Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - William G T Willats
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Henrik V Scheller
- Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
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230
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Anderson CT. Finding order in a bustling construction zone: quantitative imaging and analysis of cell wall assembly in plants. CURRENT OPINION IN PLANT BIOLOGY 2018; 46:62-67. [PMID: 30107305 DOI: 10.1016/j.pbi.2018.07.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 07/16/2018] [Accepted: 07/25/2018] [Indexed: 06/08/2023]
Abstract
Assembly of polysaccharide-based walls by plant cells involves the rapid synthesis, trafficking, and deposition of complex biopolymers, but how these events are controlled and coordinated to achieve a strong, resilient extracellular matrix has remained obscure for decades. Recent quantitative analyses of fluorescence microscopy data have revealed details of the trafficking and synthetic activity of cellulose synthases, and new methods for labeling matrix polymers have unveiled aspects of their regulated deposition in the wall. Detailed studies of the identity, architecture, activity, and trafficking of the proteins and protein complexes that synthesize wall polymers, combined with advances in image acquisition and analysis, will aid future efforts to dissect wall assembly.
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Affiliation(s)
- Charles T Anderson
- Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA; Center for Lignocellulose Structure and Formation, The Pennsylvania State University, University Park, PA 16802, USA.
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231
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Dranca F, Oroian M. Extraction, purification and characterization of pectin from alternative sources with potential technological applications. Food Res Int 2018; 113:327-350. [DOI: 10.1016/j.foodres.2018.06.065] [Citation(s) in RCA: 98] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 06/25/2018] [Accepted: 06/28/2018] [Indexed: 12/31/2022]
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232
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Stranne M, Ren Y, Fimognari L, Birdseye D, Yan J, Bardor M, Mollet JC, Komatsu T, Kikuchi J, Scheller HV, Sakuragi Y. TBL10 is required for O-acetylation of pectic rhamnogalacturonan-I in Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 96:772-785. [PMID: 30118566 DOI: 10.1111/tpj.14067] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Accepted: 08/06/2018] [Indexed: 05/12/2023]
Abstract
O-Acetylated pectins are abundant in the primary cell wall of plants and growing evidence suggests they have important roles in plant cell growth and interaction with the environment. Despite their importance, genes required for O-acetylation of pectins are still largely unknown. In this study, we showed that TRICHOME BIREFRINGENCE LIKE 10 (AT3G06080) is involved in O-acetylation of pectins in Arabidopsis (Arabidopsis thaliana). The activity of the TBL10 promoter was strong in tissues where pectins are highly abundant (e.g. leaves). Two homozygous knock-out mutants of Arabidopsis, tbl10-1 and tbl10-2, were isolated and shown to exhibit reduced levels of wall-bound acetyl esters, equivalent of ~50% of the wild-type level in pectin-enriched fractions derived from leaves. Further fractionation revealed that the degree of acetylation of the pectin rhamnogalacturonan-I (RG-I) was reduced in the tbl10 mutant compared to the wild type, whereas the pectin homogalacturonan (HG) was unaffected. The degrees of acetylation in hemicelluloses (i.e. xyloglucan, xylan and mannan) were indistinguishable between the tbl10 mutants and the wild type. The mutant plants contained normal trichomes in leaves and exhibited a similar level of susceptibility to the phytopathogenic microorganisms Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea; while they displayed enhanced tolerance to drought. These results indicate that TBL10 is required for O-acetylation of RG-I, possibly as an acetyltransferase, and suggest that O-acetylated RG-I plays a role in abiotic stress responses in Arabidopsis.
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Affiliation(s)
- Maria Stranne
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, DK-1871, Denmark
| | - Yanfang Ren
- Feedstocks Division, Joint Bioenergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Lorenzo Fimognari
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, DK-1871, Denmark
| | - Devon Birdseye
- Feedstocks Division, Joint Bioenergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Jingwei Yan
- Feedstocks Division, Joint Bioenergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, China
| | - Muriel Bardor
- Normandie Univ, UNIROUEN, Laboratoire Glyco-MEV, 76000, Rouen, France
| | | | - Takanori Komatsu
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan
| | - Jun Kikuchi
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan
| | - Henrik V Scheller
- Feedstocks Division, Joint Bioenergy Institute, Emeryville, CA, 94608, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Yumiko Sakuragi
- Copenhagen Plant Science Center, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, DK-1871, Denmark
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233
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Donev E, Gandla ML, Jönsson LJ, Mellerowicz EJ. Engineering Non-cellulosic Polysaccharides of Wood for the Biorefinery. FRONTIERS IN PLANT SCIENCE 2018; 9:1537. [PMID: 30405672 PMCID: PMC6206411 DOI: 10.3389/fpls.2018.01537] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 09/28/2018] [Indexed: 05/10/2023]
Abstract
Non-cellulosic polysaccharides constitute approximately one third of usable woody biomass for human exploitation. In contrast to cellulose, these substances are composed of several different types of unit monosaccharides and their backbones are substituted by various groups. Their structural diversity and recent examples of their modification in transgenic plants and mutants suggest they can be targeted for improving wood-processing properties, thereby facilitating conversion of wood in a biorefinery setting. Critical knowledge on their structure-function relationship is slowly emerging, although our understanding of molecular interactions responsible for observed phenomena is still incomplete. This review: (1) provides an overview of structural features of major non-cellulosic polysaccharides of wood, (2) describes the fate of non-cellulosic polysaccharides during biorefinery processing, (3) shows how the non-cellulosic polysaccharides impact lignocellulose processing focused on yields of either sugars or polymers, and (4) discusses outlooks for the improvement of tree species for biorefinery by modifying the structure of non-cellulosic polysaccharides.
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Affiliation(s)
- Evgeniy Donev
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | | | | | - Ewa J. Mellerowicz
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
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234
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Amos RA, Pattathil S, Yang JY, Atmodjo MA, Urbanowicz BR, Moremen KW, Mohnen D. A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex. J Biol Chem 2018; 293:19047-19063. [PMID: 30327429 DOI: 10.1074/jbc.ra118.004463] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Revised: 10/08/2018] [Indexed: 11/06/2022] Open
Abstract
Homogalacturonan (HG) is a pectic glycan in the plant cell wall that contributes to plant growth and development and cell wall structure and function, and interacts with other glycans and proteoglycans in the wall. HG is synthesized by the galacturonosyltransferase (GAUT) gene family. Two members of this family, GAUT1 and GAUT7, form a heteromeric enzyme complex in Arabidopsis thaliana Here, we established a heterologous GAUT expression system in HEK293 cells and show that co-expression of recombinant GAUT1 with GAUT7 results in the production of a soluble GAUT1:GAUT7 complex that catalyzes elongation of HG products in vitro The reaction rates, progress curves, and product distributions exhibited major differences dependent upon small changes in the degree of polymerization (DP) of the oligosaccharide acceptor. GAUT1:GAUT7 displayed >45-fold increased catalytic efficiency with DP11 acceptors relative to DP7 acceptors. Although GAUT1:GAUT7 synthesized high-molecular-weight polymeric HG (>100 kDa) in a substrate concentration-dependent manner typical of distributive (nonprocessive) glycosyltransferases with DP11 acceptors, reactions primed with short-chain acceptors resulted in a bimodal product distribution of glycan products that has previously been reported as evidence for a processive model of GT elongation. As an alternative to the processive glycosyltransfer model, a two-phase distributive elongation model is proposed in which a slow phase, which includes the de novo initiation of HG and elongation of short-chain acceptors, is distinguished from a phase of rapid elongation of intermediate- and long-chain acceptors. Upon reaching a critical chain length of DP11, GAUT1:GAUT7 elongates HG to high-molecular-weight products.
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Affiliation(s)
- Robert A Amos
- From the Complex Carbohydrate Research Center and.,the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | | | | | - Melani A Atmodjo
- From the Complex Carbohydrate Research Center and.,the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | | | - Kelley W Moremen
- From the Complex Carbohydrate Research Center and.,the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
| | - Debra Mohnen
- From the Complex Carbohydrate Research Center and .,the Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602
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235
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Saffer AM. Expanding roles for pectins in plant development. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:910-923. [PMID: 29727062 DOI: 10.1111/jipb.12662] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 05/02/2018] [Indexed: 05/19/2023]
Abstract
Pectins are complex cell wall polysaccharides important for many aspects of plant development. Recent studies have discovered extensive physical interactions between pectins and other cell wall components, implicating pectins in new molecular functions. Pectins are often localized in spatially-restricted patterns, and some of these non-uniform pectin distributions contribute to multiple aspects of plant development, including the morphogenesis of cells and organs. Furthermore, a growing number of mutants affecting cell wall composition have begun to reveal the distinct contributions of different pectins to plant development. This review discusses the interactions of pectins with other cell wall components, the functions of pectins in controlling cellular morphology, and how non-uniform pectin composition can be an important determinant of developmental processes.
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Affiliation(s)
- Adam M Saffer
- Department of Molecular, Cellular and Developmental Biology, Yale University, OML260, 266 Whitney Ave, New Haven, CT 06520-8104, USA
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236
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Feeding the Walls: How Does Nutrient Availability Regulate Cell Wall Composition? Int J Mol Sci 2018; 19:ijms19092691. [PMID: 30201905 PMCID: PMC6164997 DOI: 10.3390/ijms19092691] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Revised: 08/27/2018] [Accepted: 08/29/2018] [Indexed: 01/12/2023] Open
Abstract
Nutrients are critical for plants to grow and develop, and nutrient depletion severely affects crop yield. In order to optimize nutrient acquisition, plants adapt their growth and root architecture. Changes in growth are determined by modifications in the cell walls surrounding every plant cell. The plant cell wall, which is largely composed of complex polysaccharides, is essential for plants to attain their shape and to protect cells against the environment. Within the cell wall, cellulose strands form microfibrils that act as a framework for other wall components, including hemicelluloses, pectins, proteins, and, in some cases, callose, lignin, and suberin. Cell wall composition varies, depending on cell and tissue type. It is governed by synthesis, deposition and remodeling of wall components, and determines the physical and structural properties of the cell wall. How nutrient status affects cell wall synthesis and organization, and thus plant growth and morphology, remains poorly understood. In this review, we aim to summarize and synthesize research on the adaptation of root cell walls in response to nutrient availability and the potential role of cell walls in nutrient sensing.
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237
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Van de Wouwer D, Boerjan W, Vanholme B. Plant cell wall sugars: sweeteners for a bio-based economy. PHYSIOLOGIA PLANTARUM 2018; 164:27-44. [PMID: 29430656 DOI: 10.1111/ppl.12705] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 02/07/2018] [Accepted: 02/07/2018] [Indexed: 05/23/2023]
Abstract
Global warming and the consequent climate change is one of the major environmental challenges we are facing today. The driving force behind the rise in temperature is our fossil-based economy, which releases massive amounts of the greenhouse gas carbon dioxide into the atmosphere. In order to reduce greenhouse gas emission, we need to scale down our dependency on fossil resources, implying that we need other sources for energy and chemicals to feed our economy. Here, plants have an important role to play; by means of photosynthesis, plants capture solar energy to split water and fix carbon derived from atmospheric carbon dioxide. A significant fraction of the fixed carbon ends up as polysaccharides in the plant cell wall. Fermentable sugars derived from cell wall polysaccharides form an ideal carbon source for the production of bio-platform molecules. However, a major limiting factor in the use of plant biomass as feedstock for the bio-based economy is the complexity of the plant cell wall and its recalcitrance towards deconstruction. To facilitate the release of fermentable sugars during downstream biomass processing, the composition and structure of the cell wall can be engineered. Different strategies to reduce cell wall recalcitrance will be described in this review. The ultimate goal is to obtain a tailor-made biomass, derived from plants with a cell wall optimized for particular industrial or agricultural applications, without affecting plant growth and development.
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Affiliation(s)
- Dorien Van de Wouwer
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
| | - Wout Boerjan
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
| | - Bartel Vanholme
- Ghent University, Department of Plant Biotechnology and Bioinformatics, (Technologiepark 927), 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, (Technologiepark 927), 9052, Ghent, Belgium
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238
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Takenaka Y, Kato K, Ogawa-Ohnishi M, Tsuruhama K, Kajiura H, Yagyu K, Takeda A, Takeda Y, Kunieda T, Hara-Nishimura I, Kuroha T, Nishitani K, Matsubayashi Y, Ishimizu T. Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family. NATURE PLANTS 2018; 4:669-676. [PMID: 30082766 DOI: 10.1038/s41477-018-0217-7] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 07/10/2018] [Indexed: 05/18/2023]
Abstract
Pectin is one of the three key cell wall polysaccharides in land plants and consists of three major structural domains: homogalacturonan, rhamnogalacturonan I (RG-I) and RG-II. Although the glycosyltransferase required for the synthesis of the homogalacturonan and RG-II backbone was identified a decade ago, those for the synthesis of the RG-I backbone, which consists of the repeating disaccharide unit [→2)-α-L-Rha-(1 → 4)-α-D-GalUA-(1→], have remained unknown. Here, we report the identification and characterization of Arabidopsis RG-I:rhamnosyltransferases (RRTs), which transfer the rhamnose residue from UDP-β-L-rhamnose to RG-I oligosaccharides. RRT1, which is one of the four Arabidopsis RRTs, is a single-spanning transmembrane protein, localized to the Golgi apparatus. RRT1 was highly expressed during formation of the seed coat mucilage, which is a specialized cell wall with abundant RG-I. Loss-of-function mutation in RRT1 caused a reduction in the level of RG-I in the seed coat mucilage. The RRTs belong to a novel glycosyltransferase family, now designated GT106. This is a large plant-specific family, and glycosyltransferases in this family seem to have plant-specific roles, such as biosynthesis of plant cell wall polysaccharides.
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Affiliation(s)
- Yuto Takenaka
- Ritsumeikan Global Innovation Research Organization, Ritsumeikan University, Kusatsu, Japan
| | - Kohei Kato
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | | | - Kana Tsuruhama
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | - Hiroyuki Kajiura
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | - Kenta Yagyu
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | - Atsushi Takeda
- Ritsumeikan Global Innovation Research Organization, Ritsumeikan University, Kusatsu, Japan
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | - Yoichi Takeda
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan
| | - Tadashi Kunieda
- Faculty of Science and Technology, Konan University, Kobe, Japan
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Japan
| | | | - Takeshi Kuroha
- Graduate School of Life Sciences, Tohoku University, Sendai, Japan
| | | | | | - Takeshi Ishimizu
- Ritsumeikan Global Innovation Research Organization, Ritsumeikan University, Kusatsu, Japan.
- College of Life Sciences, Ritsumeikan University, Kusatsu, Japan.
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239
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Gao H, Zhang W, Wang B, Hui A, Du B, Wang T, Meng L, Bian H, Wu Z. Purification, characterization and anti-fatigue activity of polysaccharide fractions from okra (Abelmoschus esculentus (L.) Moench). Food Funct 2018; 9:1088-1101. [PMID: 29359209 DOI: 10.1039/c7fo01821e] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The aim of this study was to investigate the anti-fatigue activity of polysaccharide fractions from Abelmoschus esculentus (L.) Moench (AE) in mice. After crude polysaccharide (CAEP) was extracted from AE and purified by DEAE cellulose-52 column, two polysaccharide fractions (AEP-1 and AEP-2) were obtained. The structural analysis suggested that AEP-1 and AEP-2 were a RG-I polysaccharide and an AG-II polysaccharide, respectively. According to the results of the weight-loaded swimming test, compared with the negative control group, the CAEP, AEP-1 and AEP-2 treatment groups could prolong the swimming time, decrease serum urea nitrogen (SUN) and blood lactic acid (BLA), and increase hepatic glycogen (HG) and muscle glycogen (MG), which indicated that okra polysaccharides have an effective anti-fatigue activity. Furthermore, our study exhibited the anti-fatigue mechanism of okra polysaccharide was correlated with retarding the accumulation of creatine kinase (CK) and lactate dehydrogenase (LDH) in serum, and enhancing succinate dehydrogenase (SDH), adenosine triphosphate (ATP) and adenosine triphosphatase (ATPase) levels. In addition, the anti-fatigue activity of AEP-1 was stronger than that of AEP-2, and significantly better than that of CAEP. Therefore, AEP-1 and AEP-2 may be the main active anti-fatigue functional substances of AE.
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Affiliation(s)
- Han Gao
- School of Food Science and Engineering, Hefei University of Technology, Hefei 230009, Anhui, China.
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240
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Du J, Zhang Y, Zhao Q. New Components of the Lignin Biosynthetic Metabolon. TRENDS IN PLANT SCIENCE 2018; 23:557-559. [PMID: 29843965 DOI: 10.1016/j.tplants.2018.05.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2018] [Revised: 05/15/2018] [Accepted: 05/16/2018] [Indexed: 06/08/2023]
Abstract
Lignin biosynthetic enzymes form a complex on the ER. Here we highlight how the recent identification of the membrane steroid binding proteins (MSBPs) as the structural component of the complex have revealed the molecular mechanism underlying the monolignol metabolon formation.
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Affiliation(s)
- Juan Du
- Key Laboratory of Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, China
| | - Yang Zhang
- Key Laboratory of Bio-resource and Eco-environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, China.
| | - Qiao Zhao
- Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
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241
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Wang X, Lin L, Tang Y, Xia H, Zhang X, Yue M, Qiu X, Xu K, Wang Z. Transcriptomic insights into citrus segment membrane's cell wall components relating to fruit sensory texture. BMC Genomics 2018; 19:280. [PMID: 29685103 PMCID: PMC5914067 DOI: 10.1186/s12864-018-4669-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 04/13/2018] [Indexed: 01/14/2023] Open
Abstract
Background During fresh fruit consumption, sensory texture is one factor that affects the organoleptic qualities. Chemical components of plant cell walls, including pectin, cellulose, hemicellulose and lignin, play central roles in determining the textural qualities. To explore the genes and regulatory pathways involved in fresh citrus’ perceived sensory texture, we performed mRNA-seq analyses of the segment membranes of two citrus cultivars, Shiranui and Kiyomi, with different organoleptic textures. Results Segment membranes were sampled at two developmental stages of citrus fruit, the beginning and end of the expansion period. More than 3000 differentially expressed genes were identified. The gene ontology analysis revealed that more categories were significantly enriched in ‘Shiranui’ than in ‘Kiyomi’ at both developmental stages. In total, 108 significantly enriched pathways were obtained, with most belonging to metabolism. A detailed transcriptomic analysis revealed potential critical genes involved in the metabolism of cell wall structures, for example, GAUT4 in pectin synthesis, CESA1, 3 and 6, and SUS4 in cellulose synthesis, CSLC5, XXT1 and XXT2 in hemicellulose synthesis, and CSE in lignin synthesis. Low levels, or no expression, of genes involved in cellulose and hemicellulose, such as CESA4, CESA7, CESA8, IRX9 and IRX14, confirmed that secondary cell walls were negligible or absent in citrus segment membranes. A chemical component analysis of the segment membranes from mature fruit revealed that the pectin, cellulose and lignin contents, and the segment membrane’s weight (% of segment) were greater in ‘Kiyomi’. Conclusion Organoleptic quality of citrus is easily overlooked. It is mainly determined by sensory texture perceived in citrus segment membrane properties. We performed mRNA-seq analyses of citrus segment membranes to explore the genes and regulatory pathways involved in fresh citrus’ perceived sensory texture. Transcriptomic data showed high repeatability between two independent biological replicates. The expression levels of genes involved in cell wall structure metabolism, including pectin, cellulose, hemicellulose and lignin, were investigated. Meanwhile, chemical component contents of the segment membranes from mature fruit were analyzed. This study provided detailed transcriptional regulatory profiles of different organoleptic citrus qualities and integrated insights into the mechanisms affecting citrus’ sensory texture. Electronic supplementary material The online version of this article (10.1186/s12864-018-4669-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Xun Wang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Lijin Lin
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Yi Tang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Hui Xia
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Xiancong Zhang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Maolan Yue
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Xia Qiu
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Ke Xu
- Sichuan Horticultural Crop Agrotechnical Promotion Workstation, No 4 Wuhou Memorial Temple Street, Wuhou District, Chengdu, 610041, Sichuan, China
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China.
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242
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Wang D, Yeats TH, Uluisik S, Rose JKC, Seymour GB. Fruit Softening: Revisiting the Role of Pectin. TRENDS IN PLANT SCIENCE 2018; 23:302-310. [PMID: 29429585 DOI: 10.1016/j.tplants.2018.01.006] [Citation(s) in RCA: 211] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 01/16/2018] [Accepted: 01/18/2018] [Indexed: 05/18/2023]
Abstract
Fruit softening, which is a major determinant of shelf life and commercial value, is the consequence of multiple cellular processes, including extensive remodeling of cell wall structure. Recently, it has been shown that pectate lyase (PL), an enzyme that degrades de-esterified pectin in the primary wall, is a major contributing factor to tomato fruit softening. Studies of pectin structure, distribution, and dynamics have indicated that pectins are more tightly integrated with cellulose microfibrils than previously thought and have novel structural features, including branches of the main polymer backbone. Moreover, recent studies of the significance of pectinases, such as PL and polygalacturonase, are consistent with a causal relationship between pectin degradation and a major effect on fruit softening.
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Affiliation(s)
- Duoduo Wang
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Sutton Bonington, Loughborough, LE12 5RD, UK
| | - Trevor H Yeats
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA; Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA
| | - Selman Uluisik
- Colemerik Vocational School, Hakkari University, University Street, Karsiyaka Neighborhood 30000, Hakkari, Turkey
| | - Jocelyn K C Rose
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Graham B Seymour
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Sutton Bonington, Loughborough, LE12 5RD, UK.
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243
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Avci U, Peña MJ, O'Neill MA. Changes in the abundance of cell wall apiogalacturonan and xylogalacturonan and conservation of rhamnogalacturonan II structure during the diversification of the Lemnoideae. PLANTA 2018; 247:953-971. [PMID: 29288327 DOI: 10.1007/s00425-017-2837-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2017] [Accepted: 12/18/2017] [Indexed: 06/07/2023]
Abstract
The diversification of the Lemnoideae was accompanied by a reduction in the abundance of cell wall apiogalacturonan and an increase in xylogalacturonan whereas rhamnogalacturonan II structure and cross-linking are conserved. The subfamily Lemnoideae is comprised of five genera and 38 species of small, fast-growing aquatic monocots. Lemna minor and Spirodela polyrhiza belong to this subfamily and have primary cell walls that contain large amounts of apiogalacturonan and thus are distinct from the primary walls of most other flowering plants. However, the pectins in the cell walls of other members of the Lemnoideae have not been investigated. Here, we show that apiogalacturonan decreased substantially as the Lemnoideae diversified since Wolffiella and Wolffia walls contain between 63 and 88% less apiose than Spirodela, Landoltia, and Lemna walls. In Wolffia, the most derived genus, xylogalacturonan is far more abundant than apiogalacturonan, whereas in Wolffiella pectic polysaccharides have a high arabinose content, which may arise from arabinan sidechains of RG I. The apiose-containing pectin rhamnogalacturonan II (RG-II) exists in Lemnoideae walls as a borate cross-linked dimer and has a glycosyl sequence similar to RG-II from terrestrial plants. Nevertheless, species-dependent variations in the extent of methyl-etherification of RG-II sidechain A and arabinosylation of sidechain B are discernible. Immunocytochemical studies revealed that pectin methyl-esterification is higher in developing daughter frond walls than in mother frond walls, indicating that methyl-esterification is associated with expanding cells. Our data support the notion that a functional cell wall requires conservation of RG-II structure and cross-linking but can accommodate structural changes in other pectins. The Lemnoideae provide a model system to study the mechanisms by which wall structure and composition has changed in closely related plants with similar growth habits.
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Affiliation(s)
- Utku Avci
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
- Faculty of Engineering, Bioengineering Department, Recep Tayyip Erdogan University, 53100, Rize, Turkey
| | - Maria J Peña
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Malcolm A O'Neill
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA.
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244
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Laursen T, Stonebloom SH, Pidatala VR, Birdseye DS, Clausen MH, Mortimer JC, Scheller HV. Bifunctional glycosyltransferases catalyze both extension and termination of pectic galactan oligosaccharides. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 94:340-351. [PMID: 29418030 DOI: 10.1111/tpj.13860] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 01/23/2018] [Accepted: 01/31/2018] [Indexed: 05/18/2023]
Abstract
Pectins are the most complex polysaccharides of the plant cell wall. Based on the number of methylations, acetylations and glycosidic linkages present in their structures, it is estimated that up to 67 transferase activities are involved in pectin biosynthesis. Pectic galactans constitute a major part of pectin in the form of side-chains of rhamnogalacturonan-I. In Arabidopsis, galactan synthase 1 (GALS1) catalyzes the addition of galactose units from UDP-Gal to growing β-1,4-galactan chains. However, the mechanisms for obtaining varying degrees of polymerization remain poorly understood. In this study, we show that AtGALS1 is bifunctional, catalyzing both the transfer of galactose from UDP-α-d-Gal and the transfer of an arabinopyranose from UDP-β-l-Arap to galactan chains. The two substrates share a similar structure, but UDP-α-d-Gal is the preferred substrate, with a 10-fold higher affinity. Transfer of Arap to galactan prevents further addition of galactose residues, resulting in a lower degree of polymerization. We show that this dual activity occurs both in vitro and in vivo. The herein described bifunctionality of AtGALS1 may suggest that plants can produce the incredible structural diversity of polysaccharides without a dedicated glycosyltransferase for each glycosidic linkage.
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Affiliation(s)
- Tomas Laursen
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
| | - Solomon H Stonebloom
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
| | - Venkataramana R Pidatala
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
| | - Devon S Birdseye
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
| | - Mads H Clausen
- Department of Chemistry, Center for Nanomedicine and Theranostics, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark
| | - Jenny C Mortimer
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
| | - Henrik Vibe Scheller
- Joint BioEnergy Institute and Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94702, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
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245
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Chandrayan P. Biological Function(s) and Application (s) of Pectin and Pectin Degrading Enzymes. ACTA ACUST UNITED AC 2018. [DOI: 10.13005/bbra/2611] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Pectin is an integral part of plant cell wall and since centuries pectin extracted from plants is widely used in food and fruit juice processing. Moreover, in last half century, the applications have also invaded into many bio-processing applications such as pharmaceutical, bioenergy, textile, paper and tea processing. In these growing industries, the use of pectinases has grown with a significant amount i.e. approximately 10 % of total global enzyme market comes from pectinases. Herein comprehensive analyses of information related to structure and function of pectin in plant cell wall as well as structural classes of pectins have been discussed. The major function of pectin is in cementing the cellulose and hemicelluloses network, cell-cell adhesion and plant defence. Keeping the wide use of pectin in food industry and growing need of environment friendly technology for pectin extraction has accelerated the demand of pectin degrading enzymes (PDEs). PDEs are from three enzyme classes: carbohydrate esterases from CE8 and CE12 family, glycoside hydrolases from GH28 family and lyases from PL1, 2, 3, 9 and 10. We have reviewed the literature related to abundance and structure-function of these abovementioned enzymes from bacteria. From the current available literature, we found very limited information is present about thermostable PDEs. Hence, in future it could be a topic of study to gain the insight about structure-function of enzymes together with the expanded role of thermostable enzymes in development of bioprocesses based on these enzymes.
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Affiliation(s)
- Puja Chandrayan
- Maharishi University of Information Technology (Established vide Uttar Pradesh Act No.31of 2001) Sitapur Road (IIM Bypass, Bhitauli Tiraha, P.O-Maharishi Vidya Mandir, Lucknow-226013 (UP), India
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Li Y, Zhuo J, Liu P, Chen P, Hu H, Wang Y, Zhou S, Tu Y, Peng L, Wang Y. Distinct wall polymer deconstruction for high biomass digestibility under chemical pretreatment in Miscanthus and rice. Carbohydr Polym 2018; 192:273-281. [PMID: 29691021 DOI: 10.1016/j.carbpol.2018.03.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2017] [Revised: 02/02/2018] [Accepted: 03/08/2018] [Indexed: 11/18/2022]
Abstract
Miscanthus is a leading bioenergy crop and rice provides enormous biomass for biofuels. Using Calcofluor White staining, this work in situ observed an initial lignocellulose hydrolysis in two distinct Miscanthus accessions, rice cultivar (NPB), and Osfc16 mutant after mild chemical pretreatments. In comparison, the M. sin and Osfc16 respectively exhibited weak Calcofluor fluorescence compared to the M. sac and NPB during enzymatic hydrolysis, consistent with the high biomass saccharification detected in vitro. Using xyloglucan-directed monoclonal antibodies (mAbs), xyloglucan deconstruction was observed from initial cellulose hydrolysis, whereas the M. sin and Osfc16 exhibited relatively strong immunolabeling using xylan-directed mAb, confirming previous findings of xylan positive impacts on biomass saccharification. Furthermore, the M. sin showed quick disappearance of RG-I immunolabeling with varied HG labelings between acid and alkali pretreatments. Hence, this study demonstrated a quick approach to explore wall polymer distinct deconstruction for enhanced biomass saccharification under chemical pretreatment in bioenergy crops.
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Affiliation(s)
- Yuyang Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Jingdi Zhuo
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Peng Liu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Peng Chen
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Huizhen Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Youmei Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Shiguang Zhou
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
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247
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Schutyser W, Renders T, Van den Bosch S, Koelewijn SF, Beckham GT, Sels BF. Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading. Chem Soc Rev 2018; 47:852-908. [PMID: 29318245 DOI: 10.1039/c7cs00566k] [Citation(s) in RCA: 830] [Impact Index Per Article: 138.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
In pursuit of more sustainable and competitive biorefineries, the effective valorisation of lignin is key. An alluring opportunity is the exploitation of lignin as a resource for chemicals. Three technological biorefinery aspects will determine the realisation of a successful lignin-to-chemicals valorisation chain, namely (i) lignocellulose fractionation, (ii) lignin depolymerisation, and (iii) upgrading towards targeted chemicals. This review provides a summary and perspective of the extensive research that has been devoted to each of these three interconnected biorefinery aspects, ranging from industrially well-established techniques to the latest cutting edge innovations. To navigate the reader through the overwhelming collection of literature on each topic, distinct strategies/topics were delineated and summarised in comprehensive overview figures. Upon closer inspection, conceptual principles arise that rationalise the success of certain methodologies, and more importantly, can guide future research to further expand the portfolio of promising technologies. When targeting chemicals, a key objective during the fractionation and depolymerisation stage is to minimise lignin condensation (i.e. formation of resistive carbon-carbon linkages). During fractionation, this can be achieved by either (i) preserving the (native) lignin structure or (ii) by tolerating depolymerisation of the lignin polymer but preventing condensation through chemical quenching or physical removal of reactive intermediates. The latter strategy is also commonly applied in the lignin depolymerisation stage, while an alternative approach is to augment the relative rate of depolymerisation vs. condensation by enhancing the reactivity of the lignin structure towards depolymerisation. Finally, because depolymerised lignins often consist of a complex mixture of various compounds, upgrading of the raw product mixture through convergent transformations embodies a promising approach to decrease the complexity. This particular upgrading approach is termed funneling, and includes both chemocatalytic and biological strategies.
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Affiliation(s)
- W Schutyser
- Center for Surface Chemistry and Catalysis, KU Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium.
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248
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Kim SJ, Zemelis-Durfee S, Jensen JK, Wilkerson CG, Keegstra K, Brandizzi F. In the grass species Brachypodium distachyon, the production of mixed-linkage (1,3;1,4)-β-glucan (MLG) occurs in the Golgi apparatus. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 93:1062-1075. [PMID: 29377449 DOI: 10.1111/tpj.13830] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 01/12/2018] [Accepted: 01/18/2018] [Indexed: 05/27/2023]
Abstract
Mixed-linkage (1,3;1,4)-β-glucan (MLG) is a glucose polymer with beneficial effects on human health and high potential for the agricultural industry. MLG is present predominantly in the cell wall of grasses and is synthesized by cellulose synthase-like F or H families of proteins, with CSLF6 being the best-characterized MLG synthase. Although the function of this enzyme in MLG production has been established, the site of MLG synthesis in the cell is debated. It has been proposed that MLG is synthesized at the plasma membrane, as occurs for cellulose and callose; in contrast, it has also been proposed that MLG is synthesized in the Golgi apparatus, as occurs for other matrix polysaccharides of the cell wall. Testing these conflicting possibilities is fundamentally important in the general understanding of the biosynthesis of the plant cell wall. Using immuno-localization analyses with MLG-specific antibody in Brachypodium and in barley, we found MLG present in the Golgi, in post-Golgi structures and in the cell wall. Accordingly, analyses of a functional fluorescent protein fusion of CSLF6 stably expressed in Brachypodium demonstrated that the enzyme is localized in the Golgi. We also established that overproduction of MLG causes developmental and growth defects in Brachypodium as also occur in barley. Our results indicated that MLG production occurs in the Golgi similarly to other cell wall matrix polysaccharides, and supports the broadly applicable model in grasses that tight mechanisms control optimal MLG accumulation in the cell wall during development and growth. This work addresses the fundamental question of where mixed linkage (1,3;1,4)-β-glucan (MLG) is synthesized in plant cells. By analyzing the subcellular localization of MLG and MLG synthase in an endogenous system, we demonstrated that MLG synthesis occurs at the Golgi in Brachypodium and barley. A growth inhibition due to overproduced MLG in Brachypodium supports the general applicability of the model that a tight control of the cell wall polysaccharides accumulation is needed to maintain growth homeostasis during development.
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Affiliation(s)
- Sang-Jin Kim
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
| | - Starla Zemelis-Durfee
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
| | - Jacob Krüger Jensen
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Curtis G Wilkerson
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Kenneth Keegstra
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
- Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
- MSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, 48824, USA
| | - Federica Brandizzi
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 4882, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
- MSU-DOE Plant Research Lab, Michigan State University, East Lansing, MI, 48824, USA
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249
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Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis. Nat Biotechnol 2018; 36:249-257. [DOI: 10.1038/nbt.4067] [Citation(s) in RCA: 104] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 01/02/2018] [Indexed: 01/17/2023]
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250
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Bacete L, Mélida H, Miedes E, Molina A. Plant cell wall-mediated immunity: cell wall changes trigger disease resistance responses. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 93:614-636. [PMID: 29266460 DOI: 10.1111/tpj.13807] [Citation(s) in RCA: 282] [Impact Index Per Article: 47.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 12/07/2017] [Accepted: 12/14/2017] [Indexed: 05/18/2023]
Abstract
Plants have evolved a repertoire of monitoring systems to sense plant morphogenesis and to face environmental changes and threats caused by different attackers. These systems integrate different signals into overreaching triggering pathways which coordinate developmental and defence-associated responses. The plant cell wall, a dynamic and complex structure surrounding every plant cell, has emerged recently as an essential component of plant monitoring systems, thus expanding its function as a passive defensive barrier. Plants have a dedicated mechanism for maintaining cell wall integrity (CWI) which comprises a diverse set of plasma membrane-resident sensors and pattern recognition receptors (PRRs). The PRRs perceive plant-derived ligands, such as peptides or wall glycans, known as damage-associated molecular patterns (DAMPs). These DAMPs function as 'danger' alert signals activating DAMP-triggered immunity (DTI), which shares signalling components and responses with the immune pathways triggered by non-self microbe-associated molecular patterns that mediate disease resistance. Alteration of CWI by impairment of the expression or activity of proteins involved in cell wall biosynthesis and/or remodelling, as occurs in some plant cell wall mutants, or by wall damage due to colonization by pathogens/pests, activates specific defensive and growth responses. Our current understanding of how these alterations of CWI are perceived by the wall monitoring systems is scarce and few plant sensors/PRRs and DAMPs have been characterized. The identification of these CWI sensors and PRR-DAMP pairs will help us to understand the immune functions of the wall monitoring system, and might allow the breeding of crop varieties and the design of agricultural strategies that would enhance crop disease resistance.
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Affiliation(s)
- Laura Bacete
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, 28223, Pozuelo de Alarcón, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaría y de Biosistemas, UPM, 28040, Madrid, Spain
| | - Hugo Mélida
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, 28223, Pozuelo de Alarcón, Madrid, Spain
| | - Eva Miedes
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, 28223, Pozuelo de Alarcón, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaría y de Biosistemas, UPM, 28040, Madrid, Spain
| | - Antonio Molina
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, 28223, Pozuelo de Alarcón, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaría y de Biosistemas, UPM, 28040, Madrid, Spain
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