Large but variable methane production in anoxic freshwater sediment upon addition of allochthonous and autochthonous organic matter

Eutrophication driven macrophyte-derived organic matter decomposition to methane emission relates to co-metabolism effect in freshwater sediments

Lakes and wetlands play pivotal roles in global organic matter storage, receiving significant inputs of organic material. However, the co-metabolic processes governing the decomposition of these organic materials and their impact on greenhouse gas emissions remain inadequately understood. This study aims to assess the effects of mixed decomposition involving macrophytes and cyanobacteria on carbon emissions. A series of microcosms was established to investigate the decomposition of macrophyte residues and algae over a period of 216 days. A two-component kinetic model was utilized to estimate methane (CH4) production rates. Gas isotope technology was employed to discern the contributions of CH4 produced by macrophyte residues or algae. Quantitative PCR and analysis of 16S rRNA gene amplicons were employed to assess changes in functional genes and microbial communities. There were significant differences in the cumulative carbon release from the decomposition of different plant types due to the addition of carbon sources. After adding algae, the cumulative emission of CH4 increased significantly. The δ13C-CH4 partitioning indicated that CH4 originated exclusively from the fresh organic carbon of macrophyte residues, while it shifted to algae source after adding algae. The synergistic effect of the mixed decomposition on the CH4 emissions was greater than the sum of the individual decompositions. The microbial community richness was higher in the single plant residue treatment compared to the mixed treatment with algae addition, while microbial evenness in the sediment increased steadily in each treatment. Our findings emphasize the pronounced co-metabolic effect observed during the mixed decomposition of macrophytes and cyanobacteria.

Methane dynamics altered by reservoir operations in a typical tributary of the Three Gorges Reservoir

Substantial nutrient inputs from reservoir impoundment typically increase sedimentation rate and primary production. This can greatly enhance methane (CH4) production, making reservoirs potentially significant sources of atmospheric CH4. Consequently, elucidating CH4 emissions from reservoirs is crucial for assessing their role in the global methane budget. Reservoir operations can also influence hydrodynamic and biogeochemical processes, potentially leading to pronounced spatiotemporal heterogeneity, especially in reservoirs with complex tributaries, such as the Three Gorges Reservoir (TGR). Although several studies have investigated the spatial and temporal variations in CH4 emissions in the TGR and its tributaries, considerable uncertainties remain regarding the impact of reservoir operations on CH4 dynamics. These uncertainties primarily arise from the limited spatial and temporal resolutions of previous measurements and the complex underlying mechanisms of CH4 dynamics in reservoirs. In this study, we employed a fast-response automated gas equilibrator to measure the spatial distribution and seasonal variations of dissolved CH4 concentrations in XXB, a representative area significantly impacted by TGR operations and known for severe algal blooms. Additionally, we measured CH4 production rates in sediments and diffusive CH4 flux in the surface water. Our multiple campaigns suggest substantial spatial and temporal variability in CH4 concentrations across XXB. Specifically, dissolved CH4 concentrations were generally higher upstream than downstream and exhibited a vertical stratification, with greater concentrations in bottom water compared to surface water. The peak dissolved CH4 concentration was observed in May during the drained period. Our results suggest that the interplay between aquatic organic matter, which promotes CH4 production, and the dilution process caused by intrusion flows from the mainstream primarily drives this spatiotemporal variability. Importantly, our study indicates the feasibility of using strategic reservoir operations to regulate these factors and mitigate CH4 emissions. This eco-environmental approach could also be a pivotal management strategy to reduce greenhouse gas emissions from other reservoirs.

Autochthonous organic matter input in reservoirs: Limited methane oxidation in sediments fails to suppress methane emission

The interception of rivers leads to the accumulation of substantial organic matter in reservoirs, exerting a significant influence on greenhouse gas emissions. The diverse imported organic matter, coupled with sedimentary heterogeneity and intricate microbial processes, gives rise to seasonal variations in methane emissions from reservoirs. In this study, sediment cores were supplemented with terrestrial or autochthonous carbon to emulate reservoir carbon input across different seasons, thereby investigating methane emission potential and associated microbial mechanisms within the sediment cores. Results demonstrated that autochthonous organic matter enhanced sediment organic content, thereby providing more substrates for the methanogenic process and fostering the proliferation of methanogens (with a relative abundance of 47.17 % to 60.66 %). Notably, the dominant genera of Methanosaeta, Methanosarcina, and Candidatus Methanomethylicus were boost on the surface layer of sediment. Concurrently, the introduction of autochthonous organic carbon spurred an increase in methane-oxidizing microbe, reaching up to 5.59 %, with Methylobacter and Candidatus Methanoperedens as the predominant species, which led to a downward migration of the functional microbial group in the sediment. Under the priming impact of autochthonous carbon, however, the methane oxidation probably doesn't consume the substantial methane produced in sediment. Consequently, the sediment functions as a hotspot for methane release into the overlying water, highlighting the necessity to include summer as critical periods for integrated assessments, particularly during algae bloom.

Reduced greenhouse gas emissions from particulate organic matter degradation in iron-enriched sediments

Iron (Fe) plays an important role in the biogeochemical cycling of carbon and nutrients in aquatic systems. Reactive Fe phases can interact with organic carbon and facilitate the removal of carbon from the biogeochemical cycle; however, this important ecosystem function is often strongly controlled by Fe availability. Due to pollution from lignite mining in the Lusatian province in Northeast Germany, large amounts of iron and sulfate are released into the fluvial-lacustrine system of the Spree River. It was hypothesized that the input of freshly precipitated iron oxyhydroxides from mining areas (e.g., ferrihydrite) alter the biodegradation of particulate organic matter (POM) in downstream lacustrine sediments. To investigate the Fe-dependent degradation of POM, slurries mimicking iron-polluted sediments (85 mg Fe per g, 116 mg Fe per g, and 149 mg Fe per g dry weight) were incubated with plankton or leaf POM under anoxic and oxic headspace conditions, and CO2 and CH4 emissions, water chemistry, and stable isotopes of dissolved inorganic carbon were measured. The experiments revealed that (i) with an increasing Fe content, the CO2 and CH4 emissions were gradually reduced, (ii) CO2 and CH4 production was higher during plankton degradation than during leaf decomposition, and (iii) under oxic conditions, CO2 production was higher and CH4 production was lower when compared to the treatments under anoxic conditions. These findings demonstrate that while benthic mineralization of fresh POM typically releases greenhouse gases into the water column, the availability of iron oxyhydroxides can contribute to reduced greenhouse gas emissions from sediments. This is of considerable relevance for future carbon budgets of similar mining-affected, iron-polluted fluvial-lacustrine river systems.

Salinity decreases methane concentrations in Chinese lakes

Lakes are important sources of methane (CH4), and understanding the influence of environmental factors on CH4 concentration in lake water is crucial for accurately assessing CH4 emission from lakes. In this study, we investigated CH4 concentration in two connected Tibetan Plateau lakes, Lake Keluke (an open freshwater lake) and Lake Tuosu (a closed saline lake), through in-situ continuous measurements taken in different months from 2021 to 2023. The results show substantial spatial and seasonal variations in CH4 concentrations in the two lakes, while the CH4 concentrations in Lake Keluke are consistently higher than those in Lake Tuosu for each month. Despite sharing similar environmental conditions due to connected (e.g. pH, water temperature, dissolved oxygen content, and total organic carbon content), the critical difference between the two lakes is their salinity. This implies that salinity is the critical factor contributing to the decrease in CH4 concentrations in Lake Tuosu, possibly due to the changes in microbial species between freshwater and brackish/saline lakes. Additionally, to further validate the effect of salinity on CH4 concentrations in lake water, we compared the CH4 concentrations of 33 lakes (including 5 saline lakes and 28 freshwater lakes) from the Tibetan Plateau, Chinese Loess Plateau, and Yangtze Plain, and found that saline lakes consistently exhibit lower CH4 concentrations (avg. 0.08 μmol/L), while freshwater lakes generally display higher CH4 concentrations (avg. 1.25 μmol/L) with considerable fluctuations. Consequently, freshwater and saline lakes exhibit distinct CH4 emissions, which could be used for more accurate estimation of global CH4 emission from lakes.

Effects of chironomid larvae density and mosquito biocide on methane and carbon dioxide dynamics in freshwater sediments

Small lentic water bodies are important emitters of methane (CH4) and carbon dioxide (CO2), but the processes regulating their dynamics and susceptibility to human-induced stressors are not fully understood. Bioturbation by chironomid larvae has been proposed as a potentially important factor controlling the dynamics of both gases in aquatic sediments. Chironomid abundance can be affected by the application of biocides for mosquito control, such as Bti (Bacillus thuringiensis var. israelensis). Previous research has attributed increases in CH4 and CO2 emissions after Bti application to reduced bioturbation by chironomids. In this study, we separately tested the effect of chironomid bioturbation and Bti addition on CH4 production and emission from natural sediments. In a set of 15 microcosms, we compared CH4 and CO2 emission and production rates with high and low densities of chironomid larvae at the bioturbating stage, and standard and five times (5x) standard Bti dose, with control sediments that contained neither chironomid larvae nor Bti. Regardless of larvae density, chironomid larvae did not affect CH4 nor CO2 emission and production of the sediment, although both rates were more variable in the treatments with organisms. 5xBti dosage, however, led to a more than three-fold increase in CH4 and CO2 production rates, likely stimulated by bioavailable dissolved carbon in the Bti excipient and priming effects. Our results suggest weak effects of bioturbating chironomid larvae on the CH4 and CO2 dynamics in aquatic ecosystems. Furthermore, our results point out towards potential functional implications of Bti for carbon cycling beyond those mediated by changes in the macroinvertebrate community.

Spatio-temporal variations of methane fluxes in sediments of a deep stratified temperate lake

Spatio-temporal variability of sediment-mediated methane (CH4) production in freshwater lakes causes large uncertainties in predicting global lake CH4 emissions under different climate change and eutrophication scenarios. We conducted extensive sediment incubation experiments to investigate CH4 fluxes in Lake Stechlin, a deep, stratified temperate lake. Our results show contrasting spatial patterns in CH4 fluxes between littoral and profundal sites. The littoral sediments, ∼33% of the total sediment surface area, contributed ∼86.9% of the annual CH4 flux at the sediment-water interface. Together with sediment organic carbon quality, seasonal stratification is responsible for the striking spatial difference in sediment CH4 production between littoral and profundal zones owing to more sensitive CH4 production than oxidation to warming. While profundal sediments produce a relatively small amount of CH4, its production increases markedly as anoxia spreads in late summer. Our measurements indicate that future lake CH4 emissions will increase due to climate warming and concomitant hypoxia/anoxia.

Methane gas dynamics in sediments of Lake Kinneret, Israel, and their controls: Insights from a multiannual acoustic investigation and correlation analysis

Methane (CH4) is the simplest and most common hydrocarbon in nature. CH4 gas content is accommodated in discrete bubbles in shallow aquatic sediments. The bubble dynamics there are controlled by a diversity of physical, mechanical and biogeochemical processes that vary spatially and temporally over the aquatic ecosystem. Previous studies explored these controls on gas dynamics in shallow aquatic sediments mostly separately, despite of their coupled nature. In this study, a multiannual (2015-2021) acoustic database on gas content in sediments of Lake Kinneret, Israel is compiled. Gas content is evaluated by acoustic applications based on the sound speed inferred from the reflection coefficient. A multivariate linear regression is fitted and a closed form expression of gas content dependence on the following predictors, which change spatially and temporally over the lake, is obtained: 1) water depth; 2) short-leaving CH4 production rate peaks fueled by punctuated phytoplankton bloom crashes; and 3) CH4 bubble dissolution rates. Our comprehensive multidisciplinary analysis indicates that short-leaving CH4 production peaks act as major controls on sediment gas content in Lake Kinneret, where the hydrodynamic regime and sloping bottom transport the autochthonous organic matter toward the profundal lake zone. In contrast, the water depth predictor has the least significance, which is explained mainly by lack of ebullition in the deepest part of the lake. Our novel process-based correlation analysis enables quantification and prediction of gas content dynamics in sediments of Lake Kinneret under changing spatial and temporal conditions. Our modeling could be extended to other marine and lacustrine ecosystems with different predictors and temporal variability. Predicting CH4 gas content dynamics is important for accurate evaluation and even reduction of a long-persisting uncertainty related to CH4 flux from aquatic sediments and for assessment of sediment load-bearing capabilities affected by gas presence.

CO2 and CH4 dynamics in a eutrophic tropical Andean reservoir

We studied the dynamics of methane (CH4) and carbon dioxide (CO2) in a eutrophic tropical reservoir located in the Colombian Andes. Temporal and spatial dynamics were addressed through sampling during six field campaigns conducted throughout a two-year period. We monitored fluxes at the air-water interface, dissolved gas concentrations, physical and chemical properties of the water column, microstructure profiles of turbulence, and meteorological conditions. Throughout the study period, the reservoir was a persistent source of CH4 to the atmosphere with higher emissions occurring in the near inflow region. During periods of low water levels, both the emissions and surface concentrations of CH4 were higher and more spatially heterogeneous. The measured CO2 fluxes at the air-water interface changed direction depending on the time and location, showing alternating uptake and emissions by the water surface. Mass balances of dissolved CH4 in the surface mixed layer revealed that biochemical reactions and gas evasion were the most significant processes influencing the dynamics of dissolved CH4, and provided new evidence of possible oxic methane production. Our results also suggest that surface CH4 concentrations are higher under more eutrophic conditions, which varied both spatially and temporally.

Molecular insights into the microbial degradation of sediment-derived DOM in a macrophyte-dominated lake under aerobic and hypoxic conditions

The mineralization of dissolved organic matter (DOM) in sediments is an important factor leading to the eutrophication of macrophyte-dominated lakes. However, the changes in the molecular characteristics of sediment-derived DOM during microbial degradation in macrophyte-dominated lakes are not well understood. In this study, the microbial degradation process of sediment-derived DOM in Lake Caohai under aerobic and hypoxic conditions was investigated using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and metagenomics. The results revealed that the microbial degradation of sediment-derived DOM in macrophyte-dominated lakes was more intense under aerobic conditions. The microorganisms mainly metabolized the protein-like substances in the macrophyte-dominated lakes, and the carbohydrate-active enzyme genes and protein/lipid-like degradation genes played key roles in sediment-derived DOM degradation. Organic compounds with high H/C ratios such as lipids, carbohydrates, and protein/lipid-like compounds were preferentially removed by microorganisms during microbial degradation. Meanwhile, there was an increase in the abundance of organic molecular formula with a high aromaticity such as tannins and unsaturated hydrocarbons with low molecular weight and low double bond equivalent. In addition, aerobic/hypoxic environments can alter microbial metabolic pathways of sediment-derived DOM by affecting the relative abundance of microbial communities (e.g., Gemmatimonadetes and Acidobacteria) and functional genes (e.g., ABC.PE.P1 and ABC.PE.P) in macrophyte-dominated lakes. The abundances of lipids, unsaturated hydrocarbons, and protein compounds in aerobic environments decreased by 58 %, 50 %, and 44 %, respectively, compared to in hypoxic environments under microbial degradation. The results of this study deepen our understanding of DOM biodegradation in macrophyte-dominated lakes under different redox environments and provide new insights into nutrients releases from sediment and continuing eutrophication in macrophyte-dominated lakes.

Methane ebullition fluxes and temperature sensitivity in a shallow lake

Inland waters are important sources of atmospheric methane (CH4), with a major contribution from the CH4 ebullition pathway. However, there is still a lack of CH4 ebullition flux (eFCH4) and their temperature sensitivity (Q10) in shallow lakes, which might lead to large uncertainties in CH4 emission response from aquatic to climate and environmental change. Herein, the magnitude and regulatory of two CH4 pathways (ebullition and diffusion) were studied in subtropical Lake Chaohu, China, using the real-time portable greenhouse gas (GHG) analyzer-floating chamber method at 18 sites over four seasons. eFCH4 (12.06 ± 4.10 nmol m-2 s-1) was the dominant contributing pathway (73.0 %) to the two CH4 emission pathways in Lake Chaohu. The whole-lake mass balance calculation demonstrated that 56.6 % of the CH4 emitted from the sediment escaped through the ebullition pathway. eFCH4 was significantly higher in the western (WL: 16.54 ± 22.22 nmol m-2 s-1) and eastern lake zones (EL: 11.89 ± 15.43 nmol m-2 s-1) than in the middle lake zone (ML: 8.86 ± 13.78 nmol m-2 s-1; p < 0.05) and were significantly higher in the nearshore lake zone (NL: 15.94 ± 19.58 nmol m-2 s-1) than in the pelagic lake zone (PL: 6.64 ± 12.37 nmol m-2 s-1; p < 0.05). eFCH4 was significantly higher in summer (32.12 ± 13.82 nmol m-2 s-1) than in other seasons (p < 0.05). eFCH4 had a strong temperature dependence. Sediment total organic carbon (STOC) is an important ecosystem level Q10 driver of eFCH4. The meta-analysis also verified that across ecosystems the ecosystem-level Q10 of eFCH4 was significantly positively correlated with STOC and latitude (p < 0.05). This study suggests that eFCH4 will become increasingly crucial in shallow lake ecosystems as climate change and human activities increase. The potential increase in ebullition fluxes in high-latitude lakes is of great importance.

Controls and significance of priming effects in lake sediments

Warming and eutrophication influence carbon (C) processing in sediments, with implications for the global greenhouse-gas budget. Temperature effects on sedimentary C loss are well understood, but the mechanism of change in turnover through priming with labile organic matter (OM) is not. Evaluating changes in the magnitude of priming as a function of warming, eutrophication, and OM stoichiometry, we incubated sediments with 13 C-labeled fresh organic matter (FOM, algal/cyanobacterial) and simulated future climate scenarios (+4°C and +8°C). We investigated FOM-induced production of CH4 and microbial community changes. C loss was primed by up to 17% in dominantly allochthonous sediments (ranging from 5% to 17%), compared to up to 6% in autochthonous sediments (-9% to 6%), suggesting that refractory OM is more susceptible to priming. The magnitude of priming was dependent on sediment OM stoichiometry (C/N ratio), the ratio of fresh labile OM to microbial biomass (FOM/MB), and temperature. Priming was strongest at 4°C when FOM/MB was below 50%. Addition of FOM was associated with activation and growth of bacterial decomposers, including for example, Firmicutes, Bacteroidetes, or Fibrobacteres, known for their potential to degrade insoluble and complex structural biopolymers. Using sedimentary C/N > 15 as a threshold, we show that in up to 35% of global lakes, sedimentation is dominated by allochthonous rather than autochthonous material. We then provide first-order estimates showing that, upon increase in phytoplankton biomass in these lakes, priming-enabled degradation of recalcitrant OM will release up to 2.1 Tg C annually, which would otherwise be buried for geological times.

Quantifying cumulative changes in water quality caused by small floodgates in Taihu Lake Basin - A case in Wuxi

Small floodgates in the river network area own some characteristics: considerable quantity, wide range and short adjustment time, and intercepts the one-dimensional constant flow of rivers, which induce a great impact on riverine water quality. In this study, a typical urban floodgate-controlled reach was selected, and analyzed through the monthly data of four pollutant indicators TN, TP, CODMn and NH3-N at six sampling sites S1-S6 in 2016-2018. The principal component analysis and correlation analysis showed that TP was a representative indicator and there was a positive correlation between various pollutants. The difference test and linear regression showed that the concentration of pollutants at different sampling points varied greatly, and the pollutant concentrations in the longitudinal direction of the river showed a cubic-linear regression. The cluster system and CCME WQI showed that the water quality in the urban floodgate-controlled reach is "marginal" state, and TN and NH3-N are severely exceeding the standard. The "cumulative changes" of the floodgate on the pollutant input to the environment appeared spatial heterogeneity.

Variable promotion of algae and macrophyte organic matter on methanogenesis in anaerobic lake sediment

Shallow lakes are an important natural source of atmospheric methane (CH4), and the input of autochthonous organic matter (OM) into their sediments encourages methanogenesis. Although algal- and macrophytic-originated OM in these lakes are expected to have different impacts on methanogenesis and methanogenic archaeal communities in lake sediments owing to their various properties, their specific influence and role in sediment remain unclear. In this study, a 148-day incubation was carried out by adding algal- and macrophytic-OM to the sediments of shallow eutrophic Lake Chaohu and Lake Taihu in China. CH4 was periodically monitored, while the methanogens were examined via qPCR and high-throughput sequencing at the end of incubation. Algal-OM stimulated CH4 production more than macrophytic-OM in both sediments, with the rates initially increasing and then decreasing before reaching a relative constant. Macrophytic-OM promoted CH4 production to a comparable extent in both lakes, while algal-OM promoted greater CH4 in Lake Chaohu than in Lake Taihu. However, algal-OM did not significantly increase mcrA gene copies, while macrophytic-OM did by 17.0-20.1-fold. Algal-OM potentially promoted the methylotrophic pathway in Lake Taihu but did not change the methanogenic structure in Lake Chaohu. Comparatively, macrophytic-OM promoted CH4 production mainly by acetoclastic methanogen proliferation in both lakes. More CH4 release with algal-OM compared to macrophytic-OM deserves further attention owing to the prevailing increasing algal blooms and the declining macrophyte population in lakes.

Methane and carbon dioxide fluxes at high spatiotemporal resolution from a small temperate lake

Lakes are hotspots for CH₄ and CO₂ effluxes, but their magnitude and underlying drivers are still uncertain due to high spatiotemporal variation within and between lakes. We measured CH₄ and CO₂ fluxes at high temporal (hourly) and spatial resolution (approx. 13 m) using 24 automatic floating chambers equipped with continuously recording sensors that enabled the determination of diffusive and ebullitive gas fluxes. Additionally, we measured potential drivers such as weather patterns, water temperature, and O₂ above the sediment. During five days in autumn 2021, we conducted measurements at 88 sites in a small, shallow eutrophic Danish Lake. CH₄ ebullition was intense (mean 54.8 μmol m^-2 h^-1) and showed pronounced spatiotemporal variation. Ebullition rates were highest in deeper, hypoxic water (5-7 m). Diffusive CH₄ fluxes were 4-fold lower (mean 15.0 μmol m^-2 h^-1) and spatially less variable than ebullitive fluxes, and significantly lower above hard sediments and submerged macrophyte stands. CO₂ concentration in surface waters was permanently supersaturated at the mid-lake station, and diffusive fluxes (mean 919 μmol m^-2 h^-1) tended to be higher from deeper waters and increased with wind speed. To obtain mean whole-lake fluxes within an uncertainty of 20 %, we estimated that 72 sites for CH₄ ebullition, 39 sites for diffusive CH4 fluxes and 27 sites for diffusive CO₂ fluxes would be required. Thus, accurate whole-lake quantification of the dominant ebullitive CH₄ flux requires simultaneous operation of many automated floating chambers. High spatiotemporal variability challenges the identification of essential drivers and current methods for upscaling lake CH₄ and CO₂ fluxes. We successfully overcame this challenge by using automatic floating chambers, which offer continuous CH₄ and CO₂ flux measurements at high temporal resolution and, thus, are an improvement over existing approaches.

Changing temporal and spatial patterns of methane emission from rivers by reservoir dams: a review

Dams built on rivers can bring economic benefits to local production and are considered to be environmentally friendly. However, in recent years, many researchers found that the establishment of dams has created excellent conditions for the production of methane (CH₄) in rivers, making it change from a "weak source" of rivers to a "strong source" of dams. In particular, reservoir dams have a great impact on CH₄ emission in rivers within their regions in terms of time and space. Spatially, the sedimentary layer and water level fluctuation zone of reservoirs are the main direct and indirect causes of CH₄ production. Temporally, the synergetic effect between water level adjustment of the reservoir dam and environmental factors leads to large changes in the substances of the water body, impacts on the production and transport of CH₄. Finally, the generated CH₄ is emitted into the atmosphere through several important emission modes: molecular diffusion, bubbling, and degassing. The contribution of CH₄ emitted from reservoir dams to the global greenhouse effect cannot be ignored.

The greenhouse effect of antibiotics: The influence pathways of antibiotics on methane release from freshwater sediment

The impact of antibiotics on methane (CH₄) release from sediment involves both CH₄ production and consumption processes. However, most relevant studies lack a discussion of the pathways by which antibiotics affect CH₄ release and do not highlight the role played by the sediment chemical environment in this influence mechanism. Here, we collected field surface sediments and grouped them with various antibiotic combination concentration gradients (50, 100, 500, 1000 ng g^-1) under a 35-day indoor anaerobic constant temperature incubation. We found that the positive effect of antibiotics on sediment CH₄ release potential appeared later than the positive effect on sediment CH₄ release flux. Still, the positive effect of high-concentration antibiotics (500, 1000 ng g^-1) occurred with a lag in both processes. Also, the positive effect of high-concentration antibiotics was significantly higher than low-concentration antibiotics (50, 100 ng g^-1) in the later incubation period (p < 0.05). We performed a multi-collinearity assessment of sediment biochemical indicators, followed by a generalized linear model with negative binomial regression (GLM-NB) to obtain essential variables. In particular, we conducted the interaction analysis on CH₄ release potential and flux regression for the influence pathways construction. The partial least-squares path modeling (PLS-PM) demonstrated that the positive effect of antibiotics on CH₄ release (Total effect = 0.2579) was primarily attributed to their effect on the sediment chemical environment (Direct effect = 0.5107). These findings greatly expand our understanding of the antibiotic greenhouse effect in freshwater sediment. Further studies should more carefully consider the effects of antibiotics on the sediment chemical environment, and continuously improve the mechanistic studies of antibiotics on sediment CH₄ release.

A comprehensive review of greenhouse gas based on subject categories

Greenhouse gas (GHG) concentrations have continued to increase in the atmosphere and unequivocally warmed the climate system, and human activities contribute significantly to the growth impact. Various research puzzles and potential mitigation evidence involving GHG related research (GRR) need to be explored and deciphered from large-scale literature records to provide a whole picture and clear scientific view on the current state of GRR to promoting action on climate change. By combining Bibexcel-based bibliometrics with Pajek's social network analysis, we explore the literature statistics and interdisciplinary characteristics of GRR, and identify frequently debated topics in interdisciplinary by going deep into the texts of those classical literature. We found the trend of GRR's publications in the Environmental/Ecology group increased exponentially with an annual growth rate of 47.3 % and continue to expand in 13 subject categories. There are four types of relationships in the author cooperation, which gradually promote the cross-study of GHG in different subject categories, and the regional cooperation relations are relatively stable involving North America, Asia, Europe, Oceania, and South America. Those classical literature are widely distributed in six interdisciplinary categories, specifically 'Agronomy, Forestry and Zoology', 'Biodiversity Conservation and Ecology', 'Engineering, Environmental and Green & Sustainable Science & Technology', 'Geography and Remote Sensing', 'Limnology, Marine & Freshwater Biology and Water Resources', and 'Public, Environmental & Occupational Health'.

Sources, Migration, Transformation, and Environmental Effects of Organic Carbon in Eutrophic Lakes: A Critical Review

Organic carbon (OC) plays a leading role in the carbon cycle of lakes and is crucial to carbon balances at regional and even global scales. In eutrophic lakes, in addition to external river inputs, the decomposition of endogenous grass and algae is a major source of organic carbon. Outbreaks of algal blooms (algal eutrophication) and the rapid growth of aquatic grasses (grass eutrophication) can lead to the accumulation and decay of large amounts of algae and aquatic grass debris, which increases the intensity of the carbon cycle of lakes and greatly impacts aquatic environments and ecosystems. The structures, decomposition processes, and distribution characteristics of algae and higher aquatic plant debris in eutrophic lakes are different from mesotrophic and oligotrophic lakes. Studying their accumulation dynamics and driving mechanisms is key to further understanding lake carbon cycles and their many interdependent pathways. This paper focuses on the carbon sources, tracing technologies, migration and transformation processes, and environmental effects of OC in eutrophic lakes. Based on the existing knowledge, we further combed the literature to identify the most important knowledge gaps preventing an in-depth understanding of the processes and driving mechanisms of the organic carbon cycle in eutrophic lakes.

Warming Enhances the Co-Metabolism Effect During the Decomposition of Sediment Organic Carbon in Eutrophic Lakes

Warming has been affecting carbon cycling in freshwater ecosystems throughout recent decades. However, how the co-metabolism effect (CE) during the decomposition of sediment organic carbon (SOC) in eutrophic lakes responds to warming remains understudied. A 33-day experiment was conducted to examine the mechanisms that underpin the CE in lacustrine sediments. The results indicated that warming increased the co-metabolism intensity of sedimentary organic matter. At the beginning of the experiment (0-9 d), the co-metabolism intensity increased rapidly at both 25℃ and 35℃. However, at the end of the experiment (33 d), the cumulative co-metabolism intensity was highest at 25℃, which was 33.75% and 153.74% higher than the intensities at 15℃ and 35℃, respectively. By enhancing the co-metabolism intensity of the SOC, warming would weaken lakes "carbon sink" functions. Thus, our study provides novel evidence that microorganisms regulate SOC turnover and effectively maintain a balance between resources and microbial requirements.

Macroinvertebrates as engineers for bioturbation in freshwater ecosystem

Bioturbation is recognized as a deterministic process that sustains the physicochemical properties of the freshwater ecosystem. Irrigation, ventilation, and particle reworking activities made by biotic components on sediment beds influence the flow of nutrients and transport of particles in the sediment-water interface. Thus, the biogenic disturbances in sediment are acknowledged as pivotal mechanism nutrient cycling in the aquatic system. The macroinvertebrates of diverse taxonomic identity qualify as potent bioturbators due to their abundance and activities in the freshwater. Of particular relevance are the bioturbation activities by the sediment-dwelling biota, which introduce changes in both sediment and water profile. Multiple outcomes of the macroinvertebrate-mediated bioturbation are recognized in the form of modified sediment architecture, changed redox potential in the sediment-water interface, and elicited nutrient fluxes. The physical movement and physiological activities of benthic macroinvertebrates influence organic deposition in sediment and remobilize sediment-bound pollutants and heavy metals, as well as community composition of microbes. As ecosystem engineers, the benthic macroinvertebrates execute multiple functional roles through bioturbation that facilitate maintaining the freshwater as self-sustaining and self-stabilizing system. The likely consequences of bioturbation on the freshwater ecosystems facilitated by various macroinvertebrates - the ecosystem engineers. Among the macroinvertebrates, varied species of molluscs, insects, and annelids are the key facilitators for the movement of the nutrients and shaping of the sediment of the freshwater ecosystem.

Global increase in methane production under future warming of lake bottom waters

Lakes are significant emitters of methane to the atmosphere, and thus are important components of the global methane budget. Methane is typically produced in lake sediments, with the rate of methane production being strongly temperature dependent. Local and regional studies highlight the risk of increasing methane production under future climate change, but a global estimate is not currently available. Here, we project changes in global lake bottom temperatures and sediment methane production rates from 1901 to 2099. By the end of the 21st century, lake bottom temperatures are projected to increase globally, by an average of 0.86-2.60°C under Representative Concentration Pathways (RCPs) 2.6-8.5, with greater warming projected at lower latitudes. This future warming of bottom waters will likely result in an increase in methane production rates of 13%-40% by the end of the century, with many low-latitude lakes experiencing an increase of up to 17 times the historical (1970-1999) global average under RCP 8.5. The projected increase in methane production will likely lead to higher emissions from lakes, although the exact magnitude of the emission increase requires more detailed regional studies.

Drivers of spatial and seasonal variations of CO2 and CH4 fluxes at the sediment water interface in a shallow eutrophic lake

Shallow eutrophic lakes contribute disproportional to the emissions of CO₂ and CH₄ from inland waters. The processes that contribute to these fluxes, their environmental controls, and anthropogenic influences, however, are poorly constrained. Here, we studied the spatial variability and seasonal dynamics of CO₂ and CH₄ fluxes across the sediment-water interface, and their relationships to porewater nutrient concentrations in Lake Ulansuhai, a shallow eutrophic lake located in a semi-arid region in Northern China. The mean concentrations of CO₂ and CH₄ in porewater were 877.8 ± 31.0 µmol L^-1 and 689.2 ± 45.0 µmol L^-1, which were more than 50 and 20 times higher than those in the water column, respectively. The sediment was always a source of both gases for the water column. Porewater CO₂ and CH₄ concentrations and diffusive fluxes across the sediment-water interface showed significant temporal and spatial variations with mean diffusive fluxes of 887.3 ±124.7 µmol m^-2 d^-1 and 607.1 ± 68.0 µmol m^-2 d^-1 for CO₂ and CH₄, respectively. The temporal and spatial variations of CO₂ and CH₄ concentrations in porewater were associated with corresponding variations in dissolved organic carbon and dissolved nitrogen species. Temperature and dissolved organic carbon in surface porewater were the most important drivers of temporal variations in diffusive fluxes, whereas dissolved organic carbon and nitrogen were the main drivers of their spatial variations. Diffusive fluxes generally increased with increasing dissolved organic carbon and nitrogen in the porewater from the inflow to the outflow region of the lake. The estimated fluxes of both gases at the sediment-water interface were one order of magnitude lower than the emissions at the water surface, which were measured in a companion study. This indicates that diffusive fluxes across the sediment-water interface were not the main pathway for CO₂ and CH₄ emissions to the atmosphere. To improve the mechanistic understanding and predictability of greenhouse gas emissions from shallow lakes, future studies should aim to close the apparent gap in the CO₂ and CH₄ budget by combining improved flux measurement techniques with process-based modeling.

Sedimentation supports life-cycle CH4 production and accumulation in a river valley reservoir: A hierarchical Bayesian modeling approach

Reservoirs have been recognized as a source of methane (CH₄). With the gradual increase in the number of the world's reservoirs, predicting the long-term variation of reservoir CH₄ emissions is important to understand the global change in carbon cycling due to reservoir creation and operation. Here, we first categorized the origins and transport of organic carbon (OC) by reservoir creation and operation into the following four aspects: a) the decomposition of flooded organic matter, b) the sedimentation of OC from upstream sediment inputs, c) the transition of the aquatic ecosystem from lotic to lentic type, stimulating the production of autochthonous OC; and d) reservoir as the collector of anthropogenic OC inputs from surrounding communities. It was assumed that OC from the four aspects jointly determined the production and accumulation of reservoir CH₄ concentration, supporting life-cycle reservoir CH₄ emissions. A hierarchical Bayesian model of reservoir CH₄ concentration was established and calibrated by observed monthly datasets in 2018 in the Xiangjiaba Reservoir (XJB), a river valley dammed reservoir in the upper Yangtze River, China. The model explained the relative contributions of the four aspects to reservoir CH₄ production and accumulation. Approximately 78% of the CH₄ concentration was contributed by the decomposition of flooded organic matter during the first 10 years after impoundment. However, the contribution of flooding faded away after 10 years of impoundment. With the increase in reservoir age, sedimentation of OC dominantly determined the reservoir CH₄ production and accumulation. Scenario analysis of the XJB's life cycle demostrated that the CH₄ concentration in the XJB would reach its peak approximately 70 - 80 years after impoundment. In the cascade system, the upstream reservoir will help to reduce sediment OC input, and to mitigate downstream reservoir CH₄ production and accumulation. Our effort provided a new modeling approach for long-term management strategies to reduce reservoir CH₄ emissions under global change.

Terrigenous organic carbon drives methane dynamics in cascade reservoirs in the upper Yangtze China

Methane (CH₄) emissions from freshwaters to the atmosphere have a profound impact on global atmospheric greenhouse gas (GHG) concentrations. Anthropogenic footprints such as dam construction and reservoir operation significantly changed the fate and transport of CH₄ in freshwaters. The source of particulate organic carbon (POC) in reservoirs is a critical factor controlling CH₄ production and emissions. However, little is known of how reservoir operation mediates the transport of POC and regulates CH₄ accumulation in cascade hydroelectric reservoirs. Here, spatial and temporal variations in POC and CH₄ were explored in the Xiluodu (XLD) and Xiangjiaba (XJB) reservoirs which are deep valley cascade reservoirs located in the main channel of the upper Yangtze River. Based on the δ¹³C-POC and N/C mole ratio of particulate organic matter, the results of multi-endmember stable isotope mixing models by a Bayesian model showed that terrigenous POC and autochthonous POC accounted for approximately 55% ± 18% and 43% ± 19% (SD, n = 179) of POC, respectively. Together with other hydrological and environmental parameters, we found that the input of terrigenous POC was dominantly influenced by water level variations and flow regulation due to reservoir operation. The cumulative effect of POC caused by cascade dams was not apparent. Terrigenous POC were more likely to drive CH₄ accumulation in our study. Evident low level of CH₄ in both reservoirs were likely affected by low sedimentation of POC and microbial CH₄ oxidation. We hope our study could provide a conceptual framework for further modeling of CH₄ dynamics in cascade reservoirs.

Separating natural from human enhanced methane emissions in headwater streams

Headwater streams are natural sources of methane but are suffering severe anthropogenic disturbance, particularly land use change and climate warming. The widespread intensification of agriculture since the 1940s has increased the export of fine sediments from land to streams, but systematic assessment of their effects on stream methane is lacking. Here we show that excess fine sediment delivery is widespread in UK streams (n = 236) and, set against a pre-1940s baseline, has markedly increased streambed organic matter (23 to 100 g m⁻²), amplified streambed methane production and ultimately tripled methane emissions (0.2 to 0.7 mmol CH₄ m⁻² d⁻¹, n = 29). While streambed methane production responds strongly to organic matter, we estimate the effect of the approximate 0.7 °C of warming since the 1940s to be comparatively modest. By separating natural from human enhanced methane emissions we highlight how catchment management targeting the delivery of excess fine sediment could mitigate stream methane emissions by some 70%.

The effects of fertiliser from intensive agriculture are well recognised, but not so well for fine-sediment. Here we show how widespread ingress of agriculturally derived fine-sediment since the 1940s markedly amplifies methane emissions from streams.

Patterns and drivers of CH4 concentration and diffusive flux from a temperate river-reservoir system in North China

Freshwater reservoirs are regarded as an important anthropogenic source of methane (CH₄) emissions. The temporal and spatial variability of CH₄ emissions from different reservoirs results in uncertainty in the estimation of the global CH₄ budget. In this study, surface water CH₄ concentrations were measured and diffusive CH₄ fluxes were estimated via a thin boundary layer model in a temperate river-reservoir system in North China, using spatial (33 sites) and temporal (four seasons) monitoring; the system has experienced intensive aquaculture disturbance. Our results indicated that the dissolved CH₄ concentration in the reservoir ranged from 0.07 to 0.58 µmol/L, with an annual average of 0.13 ± 0.10 µmol/L, and the diffusive CH₄ flux across the water-air interface ranged from 0.66 to 3.61 μmol/(m²•hr), with an annual average of 1.67 ± 0.75 μmol/(m²•hr). During the study period, the dissolved CH₄ concentration was supersaturated and was a net source of atmospheric CH₄. Notably, CH₄ concentration and diffusive flux portrayed large temporal and spatial heterogeneity. The river inflow zone was determined to be a hotspot for CH₄ emissions, and its flux was significantly higher than that of the tributary and main basin; the CH₄ flux in autumn was greater than that in other seasons. We also deduced that the CH₄ concentration/diffusive flux was co-regulated mainly by water temperature, water depth, and water productivity (Chla, trophic status). Our results highlight the importance of considering the spatiotemporal variability of diffusive CH₄ flux from temperate reservoirs to estimate the CH₄ budget at regional and global scales.

Cross-continental importance of CH4 emissions from dry inland-waters

Despite substantial advances in quantifying greenhouse gas (GHG) emissions from dry inland waters, existing estimates mainly consist of carbon dioxide (CO₂) emissions. However, methane (CH₄) may also be relevant due to its higher Global Warming Potential (GWP). We report CH₄ emissions from dry inland water sediments to i) provide a cross-continental estimate of such emissions for different types of aquatic systems (i.e., lakes, ponds, reservoirs, and streams) and climate zones (i.e., tropical, continental, and temperate); and ii) determine the environmental factors that control these emissions. CH₄ emissions from dry inland waters were consistently higher than emissions observed in adjacent uphill soils, across climate zones and in all aquatic systems except for streams. However, the CH₄ contribution (normalized to CO₂ equivalents; CO₂-eq) to the total GHG emissions of dry inland waters was similar for all types of aquatic systems and varied from 10 to 21%. Although we discuss multiple controlling factors, dry inland water CH₄ emissions were most strongly related to sediment organic matter content and moisture. Summing CO₂ and CH₄ emissions revealed a cross-continental average emission of 9.6 ± 17.4 g CO₂-eq m^-2 d^-1 from dry inland waters. We argue that increasing droughts likely expand the worldwide surface area of atmosphere-exposed aquatic sediments, thereby increasing global dry inland water CH₄ emissions. Hence, CH₄ cannot be ignored if we want to fully understand the carbon (C) cycle of dry sediments.

Spatial Distribution of Ciliate Assemblages in a Shallow Floodplain Lake with an Anaerobic Zone

The spatial distribution of ciliate assemblages was studied in a shallow floodplain lake with a sharp division of space by oxygen conditions. The surface zone occupied by the “carpet” of Lemna trisulca and L. minor was characterized by a large daily amplitude of oxygen content with periodic exceeding of 100% of saturation; the underlying water layer was characterized by microaerobic conditions throughout most of the year, with seasonal deviations towards oxygen-free conditions (in winter and mid-summer) or increased oxygen content (before freezing and after ice melt); stable oxygen-free conditions were maintained in the bottom layer of water and at the bottom of the lake. There were 111 species of ciliated protozoa recorded in the lake. The ciliated protozoa were clearly structured and formed three almost non-overlapping assemblages in terms of species composition, which retained their isolation during all seasons of the year. On the basis of the analysis performed using the R indicspecies package, species of ciliated protozoa were identified as indicators of conditions with different oxygen regimes, which are determined by the level of organic pollution and the distribution of photosynthetic organisms.

Antibiotics as a silent driver of climate change? A case study investigating methane production in freshwater sediments

Methane (CH4) is the second most important greenhouse gas after carbon dioxide (CO2) and is inter alia produced in natural freshwater ecosystems. Given the rise in CH4 emissions from natural sources, researchers are investigating environmental factors and climate change feedbacks to explain this increment. Despite being omnipresent in freshwaters, knowledge on the influence of chemical stressors of anthropogenic origin (e.g., antibiotics) on methanogenesis is lacking. To address this knowledge gap, we incubated freshwater sediment under anaerobic conditions with a mixture of five antibiotics at four levels (from 0 to 5000 µg/L) for 42 days. Weekly measurements of CH4 and CO2 in the headspace, as well as their compound-specific δ13C, showed that the CH4 production rate was increased by up to 94% at 5000 µg/L and up to 29% at field-relevant concentrations (i.e., 50 µg/L). Metabarcoding of the archaeal and eubacterial 16S rRNA gene showed that effects of antibiotics on bacterial community level (i.e., species composition) may partially explain the observed differences in CH4 production rates. Despite the complications of transferring experimental CH4 production rates to realistic field conditions, the study indicated that chemical stressors contribute to the emissions of greenhouse gases by affecting the methanogenesis in freshwaters.

Quantifying groundwater carbon dioxide and methane fluxes to an urban freshwater lake using radon measurements

Freshwater lakes can play a significant role in greenhouse gas budgets as they can be sources or sinks of carbon to the atmosphere. However, there is limited information on groundwater discharge being a source of carbon to freshwater lakes. Here, we measure CO₂ and CH₄ in the largest urban freshwater lake in the metropolitan area of Sydney (Australia) and quantify groundwater discharge rates into the lake using radon (²²²Rn, a natural groundwater tracer). We also assess the spatial variability of radon, CO₂ and CH₄ in the lake, in addition to surface water and groundwater nutrient and carbon concentrations. Results revealed that the lake system was a source of CO₂ and CH₄ to the atmosphere with fluxes of 113 ± 81 and 0.3 ± 0.1 mmol/m²/d, respectively. These calculated CO₂ fluxes were larger than commonly observed lake fluxes and the global average flux from lakes. However, CH₄ fluxes were lower than the average global value. Based on the radon mass balance model, groundwater discharge to the lake was 16 ± 10 cm/d, which resulted in groundwater-derived CO₂ and CH₄ fluxes contributing 25 and 13% to the overall greenhouse gas emissions from the lake, respectively. Radon, CO₂ and CH₄ maps showed similar spatial distribution trends in the lake and a strong relationship between radon, NO₃ and NH₄ suggested groundwater flow was also a driver of nitrogen into the lake from the western side of the lake, following the general regional groundwater flow. This work provides insights into groundwater and greenhouse gas dynamics in Sydney's largest urban freshwater lake with two implications for carbon budgets: to incorporate urban lakes in global carbon budgets and to account for, the often ignored, groundwater discharge as a source of carbon to lakes.

Temporal trends in methane emissions from a small eutrophic reservoir: the key role of a spring burst

Waters impounded behind dams (i.e., reservoirs) are important sources of greenhouses gases (GHGs), especially methane (CH₄), but emission estimates are not well constrained due to high spatial and temporal variability, limitations in monitoring methods to characterize hot spot and hot moment emissions, and the limited number of studies that investigate diurnal, seasonal, and interannual patterns in emissions. In this study, we investigate the temporal patterns and biophysical drivers of CH₄ emissions from Acton Lake, a small eutrophic reservoir, using a combination of methods: eddy covariance monitoring, continuous warm-season ebullition measurements, spatial emission surveys, and measurements of key drivers of CH₄ production and emission. We used an artificial neural network to gap fill the eddy covariance time series and to explore the relative importance of biophysical drivers on the interannual timescale. We combined spatial and temporal monitoring information to estimate annual whole-reservoir emissions. Acton Lake had cumulative areal emission rates of 45.6 ± 8.3 and 51.4 ± 4.3 g CH₄ m^-2 in 2017 and 2018, respectively, or 109 ± 14 and 123 ± 10 Mg CH₄ in 2017 and 2018 across the whole 2.4 km² area of the lake. The main difference between years was a period of elevated emissions lasting less than 2 weeks in the spring of 2018, which contributed 17 % of the annual emissions in the shallow region of the reservoir. The spring burst coincided with a phytoplankton bloom, which was likely driven by favorable precipitation and temperature conditions in 2018 compared to 2017. Combining spatially extensive measurements with temporally continuous monitoring enabled us to quantify aspects of the spatial and temporal variability in CH₄ emission. We found that the relationships between CH₄ emissions and sediment temperature depended on location within the reservoir, and we observed a clear spatiotemporal offset in maximum CH₄ emissions as a function of reservoir depth. These findings suggest a strong spatial pattern in CH₄ biogeochemistry within this relatively small (2.4 km²) reservoir. In addressing the need for a better understanding of GHG emissions from reservoirs, there is a trade-off in intensive measurements of one water body vs. short-term and/or spatially limited measurements in many water bodies. The insights from multi-year, continuous, spatially extensive studies like this one can be used to inform both the study design and emission upscaling from spatially or temporally limited results, specifically the importance of trophic status and intra-reservoir variability in assumptions about upscaling CH₄ emissions.

Spatial distribution of sediment archaeal and bacterial communities relates to the source of organic matter and hypoxia - a biogeographical study on Lake Remoray (France)

Bottom waters hypoxia spreads in many lakes worldwide causing severe consequences on whole lakes trophic network. Here, we aimed at understanding the origin of organic matter stored in the sediment compartment and the related diversity of sediment microbial communities in a lake with deoxygenated deep water layers. We used a geostatistical approach to map and compare both the variation of organic matter and microbial communities in sediment. Spatialisation of C/N ratio and δ13C signature of sediment organic matter suggested that Lake Remoray was characterized by an algal overproduction which could be related to an excess of nutrient due to the close lake-watershed connectivity. Three spatial patterns were observed for sediment microbial communities after the hypoxic event, each characterized by specific genetic structure, microbial diversity and composition. The relative abundance variation of dominant microbial groups across Lake Remoray such as Cyanobacteria, Gammaproteobacteria, Deltaproteobacteria and Chloroflexi provided us important information on the lake areas where hypoxia occurs. The presence of methanogenic species in the deeper part of the lake suggests important methane production during hypoxia period. Taken together, our results provide an extensive picture of microbial communities' distribution related to quantity and quality of organic matter in a seasonally hypoxic lake.

Activity and structure of methanogenic microbial communities in sediments of cascade hydropower reservoirs, Southwest China

Freshwater reservoirs are an important source of the greenhouse gas methane (CH₄). However, little is known about the activity and structure of microbial communities involved in methanogenic decomposition of sediment organic matter (SOM) in cascade hydropower reservoirs. In this study, we targeted on sediments of three cascade reservoirs in Wujiang River, Southwest China. Our results showed that the content of sediment organic carbon (SOC) was between 3% and 11%, and it's positively correlated with both C/N ratio and recalcitrant organic carbon content of SOM. Meanwhile, SOC content was positively correlated with CH₄ production rates but had no significant correlation with total CO₂ production rates of the sediments, when rates were normalized to sediment volume. Resultantly, the sediment anaerobic decomposition rates hardly significantly increase along with the SOC content. These results suggested that the terrestrial organic matter accumulated after damming stimulated CH₄ production from the reservoir sediments even though its decomposition rate was limited. Meantime, high throughput sequencing of 16S rRNA genes indicated that not only the hydrogenotrophic and acetoclastic, but also the methylotrophic methanogens (Methanomassiliicoccus) are abundant in the reservoir sediments. Moreover, metagenomic sequencing also suggested that methylotrophic methanogenesis are potentially important in the sediment of cascade reservoirs. Finally, the hydraulic residence time of the reservoir could be the key controlling factor of the structures of bacterial and archaeal communities as well as the CH₄ production rates of the reservoir sediments.

High concentrations of dissolved biogenic methane associated with cyanobacterial blooms in East African lake surface water

The contribution of oxic methane production to greenhouse gas emissions from lakes is globally relevant, yet uncertainties remain about the levels up to which methanogenesis can counterbalance methanotrophy by leading to CH₄ oversaturation in productive surface waters. Here, we explored the biogeochemical and microbial community variation patterns in a meromictic soda lake, in the East African Rift Valley (Kenya), showing an extraordinarily high concentration of methane in oxic waters (up to 156 µmol L⁻¹). Vertical profiles of dissolved gases and their isotopic signature indicated a biogenic origin of CH₄. A bloom of Oxyphotobacteria co-occurred with abundant hydrogenotrophic and acetoclastic methanogens, mostly found within suspended aggregates promoting the interactions between Bacteria, Cyanobacteria, and Archaea. Moreover, aggregate sedimentation appeared critical in connecting the lake compartments through biomass and organic matter transfer. Our findings provide insights into understanding how hydrogeochemical features of a meromictic soda lake, the origin of carbon sources, and the microbial community profiles, could promote methane oversaturation and production up to exceptionally high rates.

Fazi et al. report on an extraordinarily high biogenic methane concentration detected in the surface water of Lake Sonachi, Kenya. Using gas chromatography and microbiome profiling, they determine that these high concentrations are associated with cyanobacterial blooms and help provide insight to methanogenesis in meromictic soda lakes.

Effects of phytoplankton blooms on fluxes and emissions of greenhouse gases in a eutrophic lake

Lakes are important sources of greenhouse gases (GHGs) to the atmosphere. Factors controlling CO₂, CH₄ and N₂O fluxes include eutrophication and warming, but the integrated influence of climate-warming-driven stratification, oxygen loss and resultant changes in bloom characteristics on GHGs are not well understood. Here we assessed the influence of contrasting meteorological conditions on stratification and phytoplankton bloom composition in a eutrophic lake, and tested for associated changes in GHGs inventories in both the shallow and deep waters, over three seasons (2010-2012). Atmospheric heatwaves had one of the most dramatic effects on GHGs. Indeed, cyanobacterial blooms that developed in response to heatwave events in 2012 enhanced both sedimentary CH₄ concentrations (reaching up to 1mM) and emissions to the atmosphere (up to 8 mmol m^-2 d^-1). That summer, CH₄ contributed 52% of the integrated warming potential of GHGs produced in the lake (in CO₂ equivalents) as compared to between 34 and 39% in years without cyanobacterial blooms. High CH₄ accumulation and subsequent emission in 2012 were preceded by CO₂ and N₂O consumption and under-saturation at the lake surface (uptakes at -30 mmol m^-2 d^-1 and -1.6 µmol m^-2 d^-1, respectively). Fall overturn presented a large efflux of N₂O and CH₄, particularly from the littoral zone after the cyanobacterial bloom. We provide evidence that, despite cooling observed at depth during hot summers, CH₄ emissions increased via stronger stratification and surface warming, resulting in enhanced cyanobacterial biomass deposition and intensified bottom water anoxia. Our results, supported by recent literature reports, suggests a novel interplay between climate change effects on lake hydrodynamics that impacts both bloom characteristics and GHGs production in shallow eutrophic lakes. Given global trends of warming and enrichment, these interactive effects should be considered to more accurately predict the future global role of lakes in GHG emissions.

Addressing algal blooms by bio-pumps to reduce greenhouse gas production and emissions with multi-path

The collapse of dense algal blooms is identified as a significant source of methane (CH₄) emissions. When flocculation is used for algae removal, algal carbon is often turned into CH₄ and carbon dioxide (CO₂). Here, we established a "bio-pump" to control algal blooms and reduce greenhouse gas (GHG) emissions by the introduction of submerged macrophytes to the aquatic ecosystem and combination of flocculation and capping. The results suggested that this strategy contributed to an approximately 98% algae removal and sustainably improved dissolved oxygen (DO) in the water and sediment after the 40-day incubation. The aerobic condition at the sediment-water interface and deeper oxygen penetration in the sediment inhibited the abundance of microorganisms related to anaerobic CH₄ production, then changed the metabolic pathway and fate of algal carbon. After the 40-day incubation, compared with flocculation-capping treatments, the bio-pump reduced 69.07% CH₄ and 77.57% CO₂ emissions, which was jointly contributed by the inhibition of anaerobic CH₄ production, aerobic oxidation of CH₄ and carbon sequestration of submerged macrophytes. This was also demonstrated from the finding of a decrease in methyl coenzyme M reductase (mcrA) gene, an increase in particulate methane monooxygenase (pmoA) gene and the absorption of ¹³C-labeled from algae biomass by submerged macrophytes at the end of incubation. Therefore, the bio-pump established in the present study can improve DO in algal blooms water and turn algal-derived organic matter into the plant biomass, which supplied a sustainable method for algae removal and GHG reduction.

Dramatic temporal variations in methane levels in black bloom prone areas of a shallow eutrophic lake

Global lakes serve as a key natural source of methane (CH₄) and suffer from increasing hypoxia due to unprecedented anthropogenic activities and climate change. A black bloom is a temporary hypoxia triggered by a longstanding algal bloom, which facilitates CH₄ production by creating reducing conditions and abundant algae-sourced organic carbon. One-year investigations were conducted to examine temporal CH₄ dynamics in the water and sediment pore water in black bloom prone areas (BBPAs) in Lake Taihu, China, where there had been at least two recorded black bloom events. The CH₄ in the water changed significantly with time (p < 0.001), with the highest concentrations appearing in warm months when an abnormal lower dissolved oxygen content was observed at different sites, which were one to two orders of magnitude higher than other months. Compared with the control site, there were significantly higher CH₄ concentrations in BBPA waters (p < 0.001), which was consistent with the higher CH₄ in the sediment pore water. Methane dynamics in the water showed significant positive correlations with temperature, total phosphorus, total nitrogen, ammonia-N, and soluble reactive phosphorus (p < 0.05), but showed a significant inverse correlation with dissolved oxygen (p < 0.01). Redundancy analysis indicated dissolved oxygen made the largest contribution to CH₄ dynamics in the BBPAs. A significant increase in the CH₄ in water will turn BBPAs into temporary hot spots with substantial CH₄ emissions with the appearance of black blooms. The results provide new insights into understanding future CH₄ dynamics under globally prevailing algal blooms and climate change.

Anaerobic and aerobic biodegradation of soil-extracted dissolved organic matter from the water-level-fluctuation zone of the Three Gorges Reservoir region, China

The biodegradation of dissolved organic matter (DOM) in natural environments is determined by its molecular composition and reactivity. Redox oscillations are common in the water-level-fluctuation zone (WLFZ) of the Three Gorges Reservoir (TGR). As a consequence, the soil DOM released is degraded under both anaerobic and aerobic conditions. The DOM compounds available for degradation under contrasting redox conditions and the resulting DOM composition still need to be elucidated. By combining laboratory experiments with an in-depth characterization of DOM optical properties, we show that different pathways controlled the depletion and enrichment of the DOM optical components under different oxygen regimes. In particular, 28-day dark biodegradation assays showed that up to 39.5 ± 4% DOM was degraded under anaerobic conditions, while 55.5 ± 6% DOM was biodegraded under aerobic conditions. Aerobic biodegradation resulted in a higher aromaticity and degree of humification of the DOM compared to anaerobic degradation. The specific UV absorbance at a wavelength of 254 (SUVA₂₅₄) and biological index (BIX) could be used to track DOM biodegradation under anaerobic conditions. Under aerobic conditions, the SUVA₂₅₄, BIX and concentration of coloured DOM (CDOM, reflected by a (355)) could track DOM biodegradation, and significant amounts of CDOM could be aerobically biodegraded.

Spatial variations in diffusive methane fluxes and the role of eutrophication in a subtropical shallow lake

Shallow lakes account for most of the diffusive CH₄ emissions from global lakes, and they also suffer from eutrophication worldwide. Determining the effect of eutrophication on diffusive CH₄ fluxes is fundamental to understanding CH₄ emissions in shallow lakes. This study aimed to investigate the spatial variations in diffusive CH₄ fluxes and explore the role of eutrophication in Lake Chaohu, a large and shallow eutrophic lake in the lower reaches of the Yangtze River. A one-year field observation was carried out to examine CH₄ concentrations in the sediment and water and the diffusive fluxes of CH₄ across the sediment-water interface (F_s-w) and water-air interface (F_w-a). Both F_s-w (0.306-1.56 mmol m^-2 d^-1) and F_w-a (0.097-0.529 mmol m^-2 d^-1) were upward and showed significant spatial heterogeneity and were significantly positively correlated. Parameters related to eutrophication had significant positive relationships with F_w-a, and the total phosphorus distribution in the water explained the greatest proportion of the spatial variation in F_w-a. Distance to shore and water depth were inversely correlated with F_w-a and modified the effects of eutrophication. Overall, the results provide direct evidence of the key role of eutrophication in shaping the spatial distribution of diffusive CH₄ fluxes and a scientific basis for predicting changes in CH₄ emissions with future eutrophication changes in shallow lakes in subtropical zones.

Lack of methane hotspot in the upstream dam: Case study in a tributary of the Three Gorges Reservoir, China

River damming has seen a growing trend in demand worldwide and the impounded reaches are considered hotspots of greenhouse gas emissions. However, it remains unclear how the spatial distribution of C-gas in sediments and methane (CH₄) emissions of dammed tributary changes under different operation periods of the Three Gorges reservoir (TGR). We measured CH₄ and carbon dioxide (CO₂) concentrations in sediment and CH₄ emissions from a dammed river of the TGR, and evaluated the effect of damming on the spatial variability of carbon in the sediment and on CH₄ flux. It was found that damming led to a distinct spatial pattern of total organic carbon (TOC) in the sediment, which resulted in higher CH₄ and CO₂ in upstream sediment compared to the downstream. During the TGR impounding period, the upstream CH₄ diffusive flux (0.253-0.427 mg m^-2 h^-1) across the water-air interface was higher than in the downstream (0.093 mg m^-2 h^-1), which was consistent with the spatial variation of CH₄ in the sediments. However, the CH₄ emission was predominantly by ebullition and the flux in the downstream (169.173 mg m^-2 h^-1) was significantly higher than upstream (12.23-123.05 mg m^-2 h^-1) in the discharging period. This can be attributed to a sharp increase in TOC in downstream sediment due to riparian zone soil erosion on both banks, which was caused by periodic large fluctuation in the water level, and a shallow water depth in the downstream. This study adds to our understanding of effects of the TGR's operation on CH₄ emissions from a dammed tributary and suggests that the water level fluctuation of tributaries which has direct influence on ebullition and methane oxidation caused by manipulation of the TGR should not be overlooked.

Underestimated methane production triggered by phytoplankton succession in river-reservoir systems: Evidence from a microcosm study

The impoundment of dammed rivers accelerates phytoplankton succession from river-dominated to lake-dominated species. Little is known about the role of phytoplankton succession in methane (CH₄) production. In this study, we performed a 61-day microcosm investigation to simulate the collapse processes of Cyclotella meneghiniana (river-dominated algae) and Chlorella pyrenoidosa and Microcystis aeruginosa (lake-dominated algae). The results suggested that different methanogenic conditions were induced by the collapse of river-and lake-dominated algae. The rapid settlement of C. meneghiniana induced aerobic conditions in the water that inhibited anaerobic CH₄ production and intensified CH₄ oxidation as a result of an increase in pmoA. However, the decomposition of C. pyrenoidosa and M. aeruginosa depleted dissolved oxygen and provided abundant labile organic matter, which jointly elevated mcrA and the mcrA/pmoA ratio. Under this condition, anaerobic CH₄ production was the dominant pathway for the mineralization of algae-derived carbon. Finally, the CH₄ produced per unit of particulate total carbon (identified as the carbon content of the algal biomass) by C. pyrenoidosa and M. aeruginosa was 16.29-fold and 8.56-fold higher, respectively, than that produced by C. meneghiniana. These observations provided evidence that lake-dominated algae played a more vital role in CH₄ production than river-dominated algae when algal succession occurred. This discovery might be a new and vital, yet largely underestimated CH₄ emission pathway in river-reservoir systems, that should be considered when evaluating the effect of hydraulic projects on greenhouse gas emissions.

The CO2 -equivalent balance of freshwater ecosystems is non-linearly related to productivity

Eutrophication of fresh waters results in increased CO₂ uptake by primary production, but at the same time increased emissions of CH₄ to the atmosphere. Given the contrasting effects of CO₂ uptake and CH₄ release, the net effect of eutrophication on the CO₂ -equivalent balance of fresh waters is not clear. We measured carbon fluxes (CO₂ and CH₄ diffusion, CH₄ ebullition) and CH₄ oxidation in 20 freshwater mesocosms with 10 different nutrient concentrations (total phosphorus range: mesotrophic 39 µg/L until hypereutrophic 939 µg/L) and planktivorous fish in half of them. We found that the CO₂ -equivalent balance had a U-shaped relationship with productivity, up to a threshold in hypereutrophic systems. CO₂ -equivalent sinks were confined to a narrow range of net ecosystem production (NEP) between 5 and 19 mmol O₂  m^-3  day^-1 . Our findings indicate that eutrophication can shift fresh waters from sources to sinks of CO₂ -equivalents due to enhanced CO₂ uptake, but continued eutrophication enhances CH₄ emission and transforms freshwater ecosystems to net sources of CO₂ -equivalents to the atmosphere. Nutrient enrichment but also planktivorous fish presence increased productivity, thereby regulating the resulting CO₂ -equivalent balance. Increasing planktivorous fish abundance, often concomitant with eutrophication, will consequently likely affect the CO₂ -equivalent balance of fresh waters.

Nonlinear response of methane release to increased trophic state levels coupled with microbial processes in shallow lakes

Shallow lakes are a crucial source of methane (CH₄), a potent greenhouse gas, to the atmosphere. However, large uncertainties still exist regarding the response of CH₄ emissions to the increasing trophic levels of lakes as well as the underlying mechanisms. Here, we investigate the CH₄ emission flux from lakes with different trophic states in the middle and lower reaches of the Yangtze River basin, China to evaluate the effect of the trophic lake index (TLI) on CH₄ emissions. The mean CH₄ emission fluxes from mesotrophic, eutrophic, middle-eutrophic, and hyper-eutrophic lakes were 0.1, 4.4, 12.0, and 130.4 mg m^-2 h^-1, respectively. Thus, the CH₄ emission flux ranged widely and was positively correlated with the degree of eutrophication. The relative abundance of methanogens with respect to the total population for the mesotrophic, eutrophic, mid-eutrophic, and hyper-eutrophic states was 0.03%, 0.35%, 0.94%, and 1.17%, respectively. The biogeographic-scale pattern of lakes classified as each of these four trophic states indicated that CH₄ emissions could be well-predicted by the NH₄⁺-N concentration in the water column, as both NH₄⁺-N and CH₄ were produced during mineralisation of labile organic matter in lake sediment. In addition, the shift from clear to turbid water, which is an unhealthy evolution for lakes, was associated with a nonlinear increase in the CH₄ emissions from the studied lakes. In particular, the hypereutrophic lakes functioned as CH₄ emission hotspots. Our findings highlight that nutrient levels, as a potential facilitator of CH₄ emissions, should be considered in future research to accurately evaluate the greenhouse gas emissions from shallow lakes.

Methane distribution patterns along a transect of Lake Fuxian, a deep oligotrophic lake in China

Freshwater ecosystems are recognized as one of the important natural methane (CH₄) sources, but little is known about the emission hotspots and the effects of algal blooms on CH₄ production in deep lakes. In this study, carried out from the littoral (S1), pelagic (S2-S4), and the deepest site (S5), water samples from different depths and sediment cores were collected along the transect of Lake Fuxian, a deep monomictic lake to investigate the spatial-temporal variations of CH₄. Dissolved methane concentration observed at the oxic metalimnion was 37.5% and 19.5% higher than that those observed at the epilimnion and at the layer between 80 and 100 m depth, respectively. During the overturn period, the vertical distribution of CH₄ in the water column was uniform, with an average concentration of 0.031 ± 0.007 μM in S2-S5. Statistical analysis indicated that the CH₄ concentration in the water column was significantly higher in S1 than other sites along the transect during both sampling periods. Sediment CH₄ concentration and methane production potential (MPP) were also significantly higher in S1 than in other sites. Along the sediment depth, the maximum MPP was observed at 6-8 cm in S1, but it moved up to the surface layer in S2-S5 in both sampling periods. In addition, stable carbon isotope analysis indicated that the surface sediments in the pelagic zone (S2-S5) mainly comprised autochthonous organic matters. In this zone, MPP had a significantly positive correlation with sediment total organic carbon (TOC) (R² = 0.401, p < 0.01). In summary, we described the spatial and temporal distributions of CH₄ in deep Lake Fuxian, littoral zones are CH₄ emission hotspots that can contribute to the CH₄ accumulation in the oxic metalimnion layer during the stratification period. In the pelagic zone, autochthonous organic matter was transported into the surface sediment after a massive algal bloom, representing another hotspot for CH₄ production.

Synchronous Nutrient Controlled-Release of Greenhouse Gases During Mineralization of Sediments from Different Lakes

Lake sediments, as an important emission source of nutrients and greenhouse gases, play a crucial role during the biogeochemical cycle processes. However, the impact mechanisms of different nutrient levels on greenhouse gas emission from lakes are still insufficient. In this study, the sediments from eight shallow lakes in the middle and lower reaches of the Yangtze River were cultured to study the release characteristics of greenhouse gases more than one month. Results showed that the greenhouse gases during the mineralization processes of sediments were mainly released to the atmosphere instead of being dissolved in the overlying water. The released concentrations of CH₄ and CO₂ were as high as 1 × 10³ μmol L^-1 in the later stage of the experiment, while the concentration of N₂O was relatively low with a maximal value of about 10 μmol L^-1. In addition, all the lake sediments displayed a nutrient release to the overlying water, where the concentrations of TC, TOC, TN, NH₄⁺-N and TP were up to 173.0, 102.7, 36.7, 30.8 and 6.34 mg L^-1, respectively. The nutrient levels of different lake sediments are symmetrical to the released nutrients concentrations in the overlying water. The further statistical analysis illustrated a synchronous nutrient controlled-release of greenhouse gases, that is, the higher the levels of nutrients in the sediments, the higher the concentrations of greenhouse gases released. These findings provide a better understanding that the control of endogenous nutrient levels of sediments is extremely important for lacustrine management, which can play a positive role in mitigating the greenhouse gas emissions from lake sediments.

Spatial variability of sediment methane production and methanogen communities within a eutrophic reservoir: Importance of organic matter source and quantity

Freshwater reservoirs are an important source of the greenhouse gas methane (CH4) to the atmosphere, but global emission estimates are poorly constrained (13.3-52.5 Tg C yr-1), partially due to extreme spatial variability in emission rates within and among reservoirs. Spatial heterogeneity in the availability of organic matter (OM) for biological CH4 production by methanogenic archaea may be an important contributor to this variation. To investigate this, we measured sediment CH4 potential production rates, OM source and quantity, and methanogen community composition at 15 sites within a eutrophic reservoir in Ohio, USA. CH4 production rates were highest in the shallow riverine inlet zone of the reservoir, even when rates were normalized to OM quantity, indicating that OM was more readily utilized by methanogens in the riverine zone than in the transitional or lacustrine zones. Sediment stable isotopes and C:N indicated a greater proportion of terrestrial OM in the particulate sediment of this zone. Methanogens were present at all sites, but the riverine zone contained a higher relative abundance of methanogens capable of acetoclastic and methylotrophic methanogenesis, likely reflecting differences in decomposition processes or OM quality. While we found that methane potential production rates were negatively correlated with autochthonous carbon in particulate sediment OM, rates were positively correlated with indicators of autochthonous carbon in the porewater dissolved OM. It is likely that both dissolved and particulate sediment OM affect CH4 production rates, and that both terrestrial and aquatic OM sources are important in the riverine methane production hot spot.

Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake

Methanotrophs are of major importance in limiting methane emissions from lakes. They are known to preferably inhabit the oxycline of stratified water columns, often assumed due to an intolerance to atmospheric oxygen concentrations, but little is known on the response of methanotrophs to different oxygen concentrations as well as their preference for different electron acceptors. In this study, we enriched a methanotroph of the Methylobacter genus from the oxycline and the anoxic water column of a stratified lake, which was also present in the oxic water column in the winter. We tested the response of this Methylobacter-dominated enrichment culture to different electron acceptors, i.e., oxygen, nitrate, sulfate, and humic substances, and found that, in contrast to earlier results with water column incubations, oxygen was the preferred electron acceptor, leading to methane oxidation rates of 45–72 pmol cell⁻¹ day⁻¹. Despite the general assumption of methanotrophs preferring microaerobic conditions, methane oxidation was most efficient under high oxygen concentrations (>600 μM). Low (<30 μM) oxygen concentrations still supported methane oxidation, but no methane oxidation was observed with trace oxygen concentrations (<9 μM) or under anoxic conditions. Remarkably, the presence of nitrate stimulated methane oxidation rates under oxic conditions, raising the methane oxidation rates by 50% when compared to oxic incubations with ammonium. Under anoxic conditions, no net methane consumption was observed; however, methanotroph abundances were two to three times higher in incubations with nitrate and sulfate compared to anoxic incubations with ammonium as the nitrogen source. Metagenomic sequencing revealed the absence of a complete denitrification pathway in the dominant methanotroph Methylobacter, but the most abundant methylotroph Methylotenera seemed capable of denitrification, which can possibly play a role in the enhanced methane oxidation rates under nitrate-rich conditions.

Terrestrial Vegetation Drives Methane Production in the Sediments of two German Reservoirs

Inland waters and reservoirs in particular are significant sources of methane to the atmosphere. However, little information is available on the extent to which organic carbon from terrestrial vegetation or from internal photosynthesis fuels the methane production. This limits our ability to constrain methane emissions efficiently. We studied the isotopic composition (13C, 14C) of pelagic and sedimentary carbon sources in two small German reservoirs. The methane was enriched by radiocarbon with isotopic ranges (∆14C 5‰ to 31‰) near to fresh terrestrial organic carbon (OC, 17‰ to 26‰). In contrast, potential source OC produced by internal photosynthesis was characterized by negative ∆14C values (-30‰ and -25‰) as derived from signatures of inorganic carbon in the reservoirs. The particulate OC in stream supplies (terrestrial OC) was also 14C depleted in almost all cases, but highly variable in ∆14C (-131‰ to 42‰). Although the import of terrestrial OC was lower than the amount of OC produced by reservoir-internal photosynthesis, we conclude that the methane production was predominantly fuelled by catchment vegetation. The utilized terrestrial OC was of contemporary origin, fixed within years to decades before sampling and supplemented with reservoir-internal or aged terrestrial OC. Our results indicate that terrestrial biomass is an important driver of methane production in reservoirs receiving significant imports of terrestrial OC.

Methane formation in tropical reservoirs predicted from sediment age and nitrogen

Freshwater reservoirs, in particular tropical ones, are an important source of methane (CH4) to the atmosphere, but current estimates are uncertain. The CH4 emitted from reservoirs is microbially produced in their sediments, but at present, the rate of CH4 formation in reservoir sediments cannot be predicted from sediment characteristics, limiting our understanding of reservoir CH4 emission. Here we show through a long-term incubation experiment that the CH4 formation rate in sediments of widely different tropical reservoirs can be predicted from sediment age and total nitrogen concentration. CH4 formation occurs predominantly in sediment layers younger than 6-12 years and beyond these layers sediment organic carbon may be considered effectively buried. Hence mitigating reservoir CH4 emission via improving nutrient management and thus reducing organic matter supply to sediments is within reach. Our model of sediment CH4 formation represents a first step towards constraining reservoir CH4 emission from sediment characteristics.