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Dini S, Oz F, Bekhit AEDA, Carne A, Agyei D. Production, characterization, and potential applications of lipopeptides in food systems: A comprehensive review. Compr Rev Food Sci Food Saf 2024; 23:e13394. [PMID: 38925624 DOI: 10.1111/1541-4337.13394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 05/20/2024] [Accepted: 05/27/2024] [Indexed: 06/28/2024]
Abstract
Lipopeptides are a class of lipid-peptide-conjugated compounds with differing structural features. This structural diversity is responsible for their diverse range of biological properties, including antimicrobial, antioxidant, and anti-inflammatory activities. Lipopeptides have been attracting the attention of food scientists due to their potential as food additives and preservatives. This review provides a comprehensive overview of lipopeptides, their production, structural characteristics, and functional properties. First, the classes, chemical features, structure-activity relationships, and sources of lipopeptides are summarized. Then, the gene expression and biosynthesis of lipopeptides in microbial cell factories and strategies to optimize lipopeptide production are discussed. In addition, the main methods of purification and characterization of lipopeptides have been described. Finally, some biological activities of the lipopeptides, especially those relevant to food systems along with their mechanism of action, are critically examined.
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Affiliation(s)
- Salome Dini
- Department of Food Science, University of Otago, Dunedin, New Zealand
| | - Fatih Oz
- Department of Food Engineering, Agriculture Faculty, Atatürk University, Erzurum, Turkey
| | | | - Alan Carne
- Department of Biochemistry, University of Otago, Dunedin, New Zealand
| | - Dominic Agyei
- Department of Food Science, University of Otago, Dunedin, New Zealand
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Leconte A, Jacquin J, Duban M, Deweer C, Trapet P, Laruelle F, Farce A, Compère P, Sahmer K, Fiévet V, Hoste A, Siah A, Lounès-Hadj Sahraoui A, Jacques P, Coutte F, Deleu M, Muchembled J. Deciphering the mechanisms involved in reduced sensitivity to azoles and fengycin lipopeptide in Venturia inaequalis. Microbiol Res 2024; 286:127816. [PMID: 38964072 DOI: 10.1016/j.micres.2024.127816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 06/06/2024] [Accepted: 06/20/2024] [Indexed: 07/06/2024]
Abstract
Apple scab, caused by the hemibiotrophic fungus Venturia inaequalis, is currently the most common and damaging disease in apple orchards. Two strains of V. inaequalis (S755 and Rs552) with different sensitivities to azole fungicides and the bacterial metabolite fengycin were compared to determine the mechanisms responsible for these differences. Antifungal activity tests showed that Rs552 had reduced sensitivity to tebuconazole and tetraconazole, as well as to fengycin alone or in a binary mixture with other lipopeptides (iturin A, pumilacidin, lichenysin). S755 was highly sensitive to fengycin, whose activity was close to that of tebuconazole. Unlike fengycin, lipopeptides from the iturin family (mycosubtilin, iturin A) had similar activity on both strains, while those from the surfactin family (lichenysin, pumilacidin) were not active, except in binary mixtures with fengycin. The activity of lipopeptides varies according to their family and structure. Analyses to determine the difference in sensitivity to azoles (which target the CYP51 enzyme involved in the ergosterol biosynthesis pathway) showed that the reduced sensitivity in Rs552 is linked to (i) a constitutive increased expression of the Cyp51A gene caused by insertions in the upstream region and (ii) greater efflux by membrane pumps with the involvement of ABC transporters. Microscopic observations revealed that fengycin, known to interact with plasma membranes, induced morphological and cytological changes in cells from both strains. Sterol and phospholipid analyses showed a higher level of ergosta-7,22-dien-3-ol and a lower level of PI(C16:0/C18:1) in Rs552 compared with S755. These differences could therefore influence the composition of the plasma membrane and explain the differential sensitivity of the strains to fengycin. However, the similar antifungal activities of mycosubtilin and iturin A in the two strains indirectly indicate that sterols are probably not involved in the fengycin resistance mechanism. This leads to the conclusion that different mechanisms are responsible for the difference in susceptibility to azoles or fengycin in the strains studied.
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Affiliation(s)
- Aline Leconte
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France; University of Lille, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, Charles Viollette Institute, Lille F-59000, France; University of Liège, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, Gembloux B-5030, Belgium
| | - Justine Jacquin
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France
| | - Matthieu Duban
- University of Lille, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, Charles Viollette Institute, Lille F-59000, France
| | - Caroline Deweer
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France
| | - Pauline Trapet
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France
| | - Frédéric Laruelle
- Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), Université Littoral Côte d'Opale, CEDEX CS 80699, Calais 62228, France
| | - Amaury Farce
- Université Lille, Inserm, CHU Lille, U1286 - INFINITE - Institut de recherche translationnelle sur l'inflammation, Lille F-59000, France
| | - Philippe Compère
- Laboratoire de morphologie fonctionnelle et évolutive, UR FOCUS, and Centre de recherche appliquée et d'enseignement en microscopie (CAREM), Université de Liège, Liège, Belgium
| | - Karin Sahmer
- Université Lille, IMT Lille Douai, Univ. Artois, JUNIA, ULR 4515 - LGCgE, Laboratoire de Génie Civil et geo-Environnement, Lille F-59000, France
| | - Valentin Fiévet
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France
| | - Alexis Hoste
- University of Liège, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, Gembloux B-5030, Belgium
| | - Ali Siah
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France
| | - Anissa Lounès-Hadj Sahraoui
- Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), Université Littoral Côte d'Opale, CEDEX CS 80699, Calais 62228, France
| | - Philippe Jacques
- University of Liège, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, Gembloux B-5030, Belgium
| | - François Coutte
- University of Lille, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, Charles Viollette Institute, Lille F-59000, France
| | - Magali Deleu
- University of Liège, UMRt BioEcoAgro 1158-INRAE, Microbial Secondary Metabolites team, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, Gembloux B-5030, Belgium
| | - Jérôme Muchembled
- JUNIA, UMRt BioEcoAgro 1158-INRAE, Plant Secondary Metabolites Team, Charles Viollette Institute, Lille F-59000, France.
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Chetan KK, Kishore Varma P, Chandrasekhar V, Anil Kumar P, Vasanthi V, Vamshi Krishna G. Unveiling the Biocontrol Potential of Rhizoplane Bacillus Species against Sugarcane Fusarium Wilt through Biochemical and Molecular Analysis. Braz J Microbiol 2024; 55:1883-1896. [PMID: 38609692 PMCID: PMC11153384 DOI: 10.1007/s42770-024-01307-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 03/10/2024] [Indexed: 04/14/2024] Open
Abstract
BACKGROUND Biocontrol is regarded as a viable alternate technique for managing sugarcane wilt disease caused by Fusarium sacchari. Many fungal antagonists against F. sacchari, have been reported, but the potential of bacterial antagonists was explored to a limited extent, so the present study evaluated the antagonistic potential of rhizoplane Bacillus species and their mode of action. RESULTS A total of twenty Bacillus isolates from the rhizoplane of commercially grown sugarcane varieties were isolated. The potential isolate SRB2 had shown inhibition of 52.30, 33.33, & 44.44% and SRB20 of 35.00, 33.15, & 36.85% in direct, indirect, and remote confrontation respectively against F. sacchari. The effective strains were identified as Bacillus inaquosorum strain SRB2 and B. vallismortis strain SRB20, by PCR amplification of 16S-23S intergenic region. The biochemical studies on various direct and indirect biocontrol mechanisms revealed the production of IAA, Protease, Cellulase, Siderophores, and P solubilization. The molecular analysis revealed the presence of antimicrobial peptides biosynthetic genes like fenD (Fengycin), bmyB (Bacyllomicin) ituC (Iturin) and spaS (Subtilin) which provided a competitive edge to these isolates compared to other Bacillus strains. Under greenhouse experiments, the sett bacterization with SRB2, significantly (P < 0.001) reduced the seedling mortality by > 70% followed by SRB20 in F. sacchari inoculated pots. CONCLUSION The study revealed that the isolates B. inaquosorum SRB2 and B. vallismortis SRB20 can be used as potential bioagents against sugarcane Fusarium wilt.
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Affiliation(s)
- K K Chetan
- Division of Plant Pathology, ICAR-IARI, New Delhi, India.
| | | | - V Chandrasekhar
- Department of Plant Pathology, RARS, Anakapalle, Visakapatnam, India
| | - P Anil Kumar
- Department of Plant Pathology, Acharya NG Ranga Agricultural University, Guntur, India
| | - V Vasanthi
- Department of Plant Pathology, Agricultural College, Bapatla, India
| | - G Vamshi Krishna
- Department of Plant Pathology, Agricultural College, Bapatla, India
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Luna-Bulbarela A, Romero-Gutiérrez MT, Tinoco-Valencia R, Ortiz E, Martínez-Romero ME, Galindo E, Serrano-Carreón L. Response of Bacillus velezensis 83 to interaction with Colletotrichum gloeosporioides resembles a Greek phalanx-style formation: A stress resistant phenotype with antibiosis capacity. Microbiol Res 2024; 280:127592. [PMID: 38199003 DOI: 10.1016/j.micres.2023.127592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 12/06/2023] [Accepted: 12/20/2023] [Indexed: 01/12/2024]
Abstract
Plant growth-promoting rhizobacteria, such as Bacillus spp., establish beneficial associations with plants and may inhibit the growth of phytopathogenic fungi. However, these bacteria are subject to multiple biotic stimuli from their competitors, causing stress and modifying their development. This work is a study of an in vitro interaction between two model microorganisms of socioeconomic relevance, using population dynamics and transcriptomic approaches. Co-cultures of Bacillus velezensis 83 with the phytopathogenic fungus Colletotrichum gloeosporioides 09 were performed to evaluate the metabolic response of the bacteria under conditions of non-nutritional limitation. The bacterial response was associated with the induction of a stress-resistant phenotype, characterized by a lower specific growth rate, but with antimicrobial production capacity. About 12% of co-cultured B. velezensis 83 coding sequences were differentially expressed, including the up-regulation of the general stress response (sigB regulon), and the down-regulation of alternative carbon sources catabolism (glucose preference). Defense strategies in B. velezensis are a determining factor in order to preserve the long-term viability of its population. Mostly, the presence of the fungus does not affect the expression of antibiosis genes, except for those corresponding to surfactin/bacillomycin D production. Indeed, the up-regulation of antibiosis genes expression is associated with bacterial growth, regardless of the presence of the fungus. This behavior in B. velezensis 83 resembles the strategy used by the classical Greek phalanx formation: by sacrificing growth rate and metabolic versatility, resources can be redistributed to defense (stress resistant phenotype) while maintaining the attack (antibiosis capacity). The presented results are the first characterization of the molecular phenotype at the transcriptome level of a biological control agent under biotic stress caused by a phytopathogen without nutrient limitation.
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Affiliation(s)
- Agustín Luna-Bulbarela
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico; Agro&Biotecnia S. de R.L. de C.V., Limones 8, Amate Redondo, 62334 Cuernavaca, Morelos, Mexico
| | - María Teresa Romero-Gutiérrez
- Technological Innovation Department, Tlajomulco University Center, University of Guadalajara, 45641 Tlajomulco de Zúñiga, Jalisco, Mexico; Translational Bioengineering Department, Exact Sciences and Engineering University Center, Universidad de Guadalajara, Blvd. Marcelino García Barragán #1421, 44430 Guadalajara, Jalisco, Mexico
| | - Raunel Tinoco-Valencia
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico
| | - Ernesto Ortiz
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico
| | - María Esperanza Martínez-Romero
- Ecología Genómica, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Av. Universidad s/n, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico
| | - Enrique Galindo
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico; Agro&Biotecnia S. de R.L. de C.V., Limones 8, Amate Redondo, 62334 Cuernavaca, Morelos, Mexico
| | - Leobardo Serrano-Carreón
- Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, CP 62210 Cuernavaca, Morelos, Mexico; Agro&Biotecnia S. de R.L. de C.V., Limones 8, Amate Redondo, 62334 Cuernavaca, Morelos, Mexico.
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Chouaia B, Dittmer J. A 2000-Year-Old Bacillus stercoris Strain Sheds Light on the Evolution of Cyclic Antimicrobial Lipopeptide Synthesis. Microorganisms 2024; 12:338. [PMID: 38399742 PMCID: PMC10893106 DOI: 10.3390/microorganisms12020338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Revised: 01/25/2024] [Accepted: 01/30/2024] [Indexed: 02/25/2024] Open
Abstract
Some bacteria (notably the genera Bacillus and Clostridium) have the capacity to form endospores that can survive for millions of years in isolated habitats. The genomes of such ancient bacteria provide unique opportunities to understand bacterial evolution and metabolic capabilities over longer time scales. Herein, we sequenced the genome of a 2000-year-old bacterial strain (Mal05) isolated from intact apple seeds recovered during archaeological excavations of a Roman villa in Italy. Phylogenomic analyses revealed that this strain belongs to the species Bacillus stercoris and that it is placed in an early-branching position compared to most other strains of this species. Similar to other Bacillus species, B. stercoris Mal05 had been previously shown to possess antifungal activity. Its genome encodes all the genes necessary for the biosynthesis of fengycin and surfactin, two cyclic lipopeptides known to play a role in the competition of Bacilli with other microorganisms due to their antimicrobial activity. Comparative genomics and analyses of selective pressure demonstrate that these genes are present in all sequenced B. stercoris strains, despite the fact that they are not under strong purifying selection. Hence, these genes may not be essential for the fitness of these bacteria, but they can still provide a competitive advantage against other microorganisms present in the same environment.
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Affiliation(s)
- Bessem Chouaia
- Department of Environmental Sciences, Informatics and Statistics, Ca’ Foscari University of Venice, 30172 Venice, Italy
| | - Jessica Dittmer
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, 39100 Bolzano, Italy;
- UMR 1345, Institut Agro, INRAE, IRHS, SFR Quasav, Université d’Angers, 49070 Beaucouzé, France
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Phungula A, Waddad AY, Fernandez Leyes MD, Di Gianvincenzo P, Espuche B, Zuffi S, Moya SE, Albericio F, de la Torre BG. Self-assembly of NrTP6 cell-penetrating lipo-peptide with variable number of lipid chains: Impact of phosphate ions on lipid association. J Colloid Interface Sci 2024; 654:124-133. [PMID: 37837849 DOI: 10.1016/j.jcis.2023.09.161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/14/2023] [Accepted: 09/27/2023] [Indexed: 10/16/2023]
Abstract
HYPOTHESIS Lipopeptides synthesized from the Nucleolar Targeting Peptide (NrTP6) with one, two or four dodecanoic fatty acid (FA) chains, display large head to tail volumes, which together with the number of lipid chains per molecule, impacts their self-assembly behavior. In phosphate buffer (PB), peptide to peptide interactions are triggered by the presence of phosphate ions that act as ionic crosslinkers, affecting the organization of the lipid assemblies. EXPERIMENTAL The NrTP6 lipopeptides were synthesized by the solid phase peptide synthesis technique. The critical micellar concentration (CMC) of the lipopeptides was determined in water and PB by pyrene fluorescence. The size and morphology of lipopeptide assemblies were characterized by dynamic light scattering (DLS) and transmission electron microscopy (TEM). Circular dichroism (CD) was used to study the secondary structures of the lipopeptide assemblies. RESULTS For NrTP6 lipopeptides with two and four lipid chains, CMCs in water are larger than in PB. TEM images of the lipopeptide assemblies show different morphologies including fibers, rods, and spheres depending on the number of lipid chains, concentration and whether they are assembled in water or PB. CD spectroscopy shows that the peptide conformation, either random or beta, correlates with the morphology of the assemblies.
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Affiliation(s)
- Amanda Phungula
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa; Soft Matter Nanotechnology Laboratory, CIC biomaGUNE, San-Sebastian 20010, Spain
| | - Ayman Y Waddad
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
| | - Marcos Daniel Fernandez Leyes
- Soft Matter Nanotechnology Laboratory, CIC biomaGUNE, San-Sebastian 20010, Spain; Instituto de Fisica del Sur (IFISUR-CONICET), Av. Alem 1253, Bahia Blanca 8000, Argentina
| | | | - Bruno Espuche
- Soft Matter Nanotechnology Laboratory, CIC biomaGUNE, San-Sebastian 20010, Spain; POLYMAT, Applied Chemistry Department, Faculty of Chemistry, University of the Basque Country, UPV/EHU, Paseo Manuel de Lardizabal 3, 20018 Donostia-San Sebastián, Guipúzcoa, Spain
| | - Sofia Zuffi
- Soft Matter Nanotechnology Laboratory, CIC biomaGUNE, San-Sebastian 20010, Spain
| | - Sergio Enrique Moya
- Soft Matter Nanotechnology Laboratory, CIC biomaGUNE, San-Sebastian 20010, Spain.
| | - Fernando Albericio
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa; CIBER-BBN and Department of Organic Chemistry, University of Barcelona, Barcelona 08001, Spain
| | - Beatriz G de la Torre
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa; KRISP, School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban 4001, South Africa.
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Han D, Ji Y, Yang S, Song P, Shi Y, Shao D, Chen X, Shang L, Shi J, Jiang C. Therapeutic effect of iturin A on Candida albicans oral infection and its pathogenic factors. Antimicrob Agents Chemother 2024; 68:e0094823. [PMID: 38051047 PMCID: PMC10777857 DOI: 10.1128/aac.00948-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 10/23/2023] [Indexed: 12/07/2023] Open
Abstract
Candida albicans is responsible for conditions ranging from superficial infections such as oral or vaginal candidiasis to potentially fatal systemic infections. It produces pathogenic factors contributing to its virulence. Iturin A, a lipopeptide derived from Bacillus sp., exhibits a significant inhibitory effect against C. albicans. However, its exact mechanism in mitigating the pathogenic factors of C. albicans remains to be elucidated. This study aimed to explore the influence of iturin A on several pathogenic attributes of C. albicans, including hypha formation, cell membrane permeability, cell adhesion, biofilm formation, and therapeutic efficacy in an oral C. albicans infection model in mice. The minimal inhibitory concentration of iturin A against C. albicans was determined to be 25 µg/mL in both YEPD and RPMI-1640 media. Iturin A effectively inhibited C. albicans hyphal formation, decreased cell viability within biofilms, enhanced cell membrane permeability, and disrupted cell adhesion in vitro. Nonetheless, iturin A did not significantly affect the phospholipase activity or hydrophobicity of C. albicans. A comparative study with nystatin demonstrated the superior therapeutic efficacy of iturin A in a mouse model of oral C. albicans infection, significantly decreasing C. albicans count and inhibiting both fungal hypha formation and tongue surface adhesion. High-dose iturin A treatment (25 µg/mL) in mice had no significant effects on blood indices, tongue condition, or body weight, indicating the potential for iturin A in managing oral infections. This study confirmed the therapeutic potential of iturin A and provided valuable insights for developing effective antifungal therapies targeting C. albicans pathogenic factors.
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Affiliation(s)
- Di Han
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Yulan Ji
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Saixue Yang
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Pei Song
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Yihong Shi
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Dongyan Shao
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Xianqing Chen
- School of Medicine, Xi’an International University, Xi’an, China
| | - Li Shang
- State Key Laboratory of Solidification Processing, Center for Nano Energy Materials, School of Materials Science and Engineering, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Junling Shi
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
| | - Chunmei Jiang
- School of Life Sciences, Northwestern Polytechnical University, Xi’an, Shaanxi Province, China
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Santos-Lima D, de Castro Spadari C, de Morais Barroso V, Carvalho JCS, de Almeida LC, Alcalde FSC, Ferreira MJP, Sannomiya M, Ishida K. Lipopeptides from an isolate of Bacillus subtilis complex have inhibitory and antibiofilm effects on Fusarium solani. Appl Microbiol Biotechnol 2023; 107:6103-6120. [PMID: 37561179 DOI: 10.1007/s00253-023-12712-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/10/2023] [Accepted: 07/25/2023] [Indexed: 08/11/2023]
Abstract
Bacillus subtilis species complex is known as lipopeptide-producer with biotechnological potential for pharmaceutical developments. This study aimed to identify lipopeptides from a bacterial isolate and evaluate their antifungal effects. Here, we isolated and identified a lipopeptide-producing bacterium as a species of Bacillus subtilis complex (strain UL-1). Twenty lipopeptides (six iturins, six fengycins, and eight surfactins) were identified in the crude extract (CE) and fractions (F1, F2, F3, and F4), and the highest content of total lipopeptides was observed in CE and F2. The chemical quantification data corroborate with the hemolytic and antifungal activities that CE and F2 were the most hemolytic and inhibited the fungal growth at lower concentrations against Fusarium spp. In addition, they caused morphological changes such as shortening and/or atypical branching of hyphae and induction of chlamydospore-like structure formation, especially in Fusarium solani. CE was the most effective in inhibiting the biofilm formation and in disrupting the mature biofilm of F. solani reducing the total biomass and the metabolic activity at concentrations ≥ 2 µg/mL. Moreover, CE significantly inhibited the adherence of F. solani conidia on contact lenses and nails as well as disrupted the pre-formed biofilms on nails. CE at 100 mg/kg was nontoxic on Galleria mellonella larvae, and it reduced the fungal burden in larvae previously infected by F. solani. Taken together, the lipopeptides obtained from strain UL-1 demonstrated a potent anti-Fusarium effect inducing morphological alterations and antibiofilm activities. Our data open further studies for the biotechnological application of these lipopeptides as potential antifungal agents. KEY POINTS: • Lipopeptides inhibit Fusarium growth and induce chlamydospore-like structures. • Lipopeptides hamper the adherence of conidia and biofilms of Fusarium solani. • Iturins, fengycins, and surfactins were associated with antifungal effects.
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Affiliation(s)
- Daniélle Santos-Lima
- Institute of Biomedical Sciences, University of São Paulo, São Paulo, SP, Brazil
| | | | | | | | | | | | | | - Miriam Sannomiya
- School of Arts, Sciences and Humanities, University of São Paulo, Arlindo Béttio St. 1000, São Paulo, SP, 03828-000, Brazil.
| | - Kelly Ishida
- Institute of Biomedical Sciences, University of São Paulo, São Paulo, SP, Brazil.
- Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo, Prof. Lineu Prestes Ave. 1374, São Paulo, SP, 05508-000, Brazil.
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Huang W, Qu L, Gao P, Du G. Bioassay and Whole-Genome Analysis of Bacillus velezensis FIO1408, a Biocontrol Agent Against Pathogenic Bacteria in Aquaculture. Curr Microbiol 2023; 80:354. [PMID: 37740122 DOI: 10.1007/s00284-023-03423-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 03/04/2023] [Indexed: 09/24/2023]
Abstract
Bacterial disease is one of the most critical problems in aquaculture. Probiotics represent a promising biological approach to control bacterial disease because it is effective against pathogens and environmentally friendly. This study assessed the antagonistic activities of a bacterial strain FIO1408 isolated from deep-sea water against many pathogenic bacteria in aquaculture, including Listonella anguillarum, Vibrio parahaemolyticus, Vibrio alginolyticus, Aeromonas hydrophila, Edwardsiella anguillarum, Edwardsiella tarda, and Edwardsiella piscicida. The complete genome of strain FIO1408 consisted of a circular chromosome of 4,137,639 bp and two plasmids of 16,439 bp and 24,472 bp. Phylogenetic analysis showed strain FIO1408 clustered with Bacillus velezensis strains. 12 genes/gene clusters responsible for the synthesis of secondary metabolites were identified in the FIO1408 genome, including three lipopeptides, three polyketides, three bacteriocins, one siderophore, one dipeptide, and one unknown type. Also identified were 273 unique orthologous genes primarily involved in phage resistance, protein hydrolysis, environmental survivability, and genetic stability compared to B. velezensis KACC 13105, B. velezensis FZB42T, and B. velezensis NRRL B-41580. The principal safety of FIO1408 was demonstrated by genetic analyses and feeding trials. These findings will contribute to studies on the biocontrol mechanisms of B. velezensis FIO1408 and facilitate its application as a potent biological control agent against bacterial pathogens in aquaculture.
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Affiliation(s)
- Wenhao Huang
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao, 266061, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, 266237, China
| | - Lingyun Qu
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao, 266061, China.
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, 266237, China.
| | - Ping Gao
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao, 266061, China.
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, 266237, China.
| | - Guangxun Du
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources (MNR), Qingdao, 266061, China
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de Souza EMDC, de Oliveira MVD, Siqueira JEDS, Rocha DCDC, Marinho ADNR, Marinho AMDR, Marinho PSB, Lima AH. Molecular characterization and in silico evaluation of surfactins produced by endophytic bacteria from Phanera splendens. Front Chem 2023; 11:1240704. [PMID: 37608862 PMCID: PMC10441774 DOI: 10.3389/fchem.2023.1240704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 07/28/2023] [Indexed: 08/24/2023] Open
Abstract
The Phanera splendens (Kunth) Vaz. is a medicinal plant that is used in traditional medicine for the treatment of various diseases, such as malaria. This plant presents highly efficient endophytic bacterial isolates with biocontrol properties. Bacillus sp. is responsible for the production of a variety of non-ribosomal synthesized cyclic lipopeptides which highlight the surfactins. Surfactins have a wide range of antimicrobial activity, including antiplasmodial activity. There is scientific evidence that surfactin structure 2d-01 can be a potent inhibitor against a Plasmodium falciparum sirtuin (Sir2) by acting on the Sir2A protein as the target. The Pf genome encodes two known sirtuins, PfSir2A and PfSir2B, where PfSir2A is a regulator of asexual growth and var gene expression. Herein, we have identified six surfactins produced by endophytic bacteria and performed in silico analysis to elucidate the binding mode of surfactins at the active site of the PfSir2A enzyme. Among the characterized surfactins, 1d-02 showed the highest affinity for the PfSir2A enzyme, with binding energy values equal to -45.08 ± 6.0 and -11.95 ± 0.8 kcal/mol, using MM/GBSA and SIE methods, respectively. We hope that the information about the surfactin structures obtained in this work, as well as the potential binding affinity with an important enzyme from P. falciparum, could contribute to the design of new compounds with antimalarial activity.
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Affiliation(s)
| | - Maycon Vinicius Damasceno de Oliveira
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil
| | - José Edson de Sousa Siqueira
- Laboratório de Bioensaios e Química de Microrganismos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil
| | | | | | - Andrey Moacir do Rosario Marinho
- Laboratório de Bioensaios e Química de Microrganismos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil
| | - Patrícia Santana Barbosa Marinho
- Laboratório de Bioensaios e Química de Microrganismos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil
| | - Anderson H. Lima
- Laboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará, Belém, Pará, Brazil
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Zhou J, Wu G, Zheng J, Abdalmegeed D, Wang M, Sun S, Sedjoah RCAA, Shao Y, Sun S, Xin Z. Research on the Regulation of Plipastatin Production by the Quorum-Sensing ComQXPA System of Bacillus amyloliquefaciens. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023. [PMID: 37427858 DOI: 10.1021/acs.jafc.3c03120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/11/2023]
Abstract
Plipastatin is a cyclic lipopeptide synthesized by non-ribosomal peptide synthetases (NRPS), which has a diverse range of applications in postharvest preservation of fruits and vegetables, biological control, and feed processing. Whereas the yield of plipastatin in wild Bacillus sp. is low, its chemical structure is complex and challenging to synthesize, significantly limiting its production and application. ComQXPA-PsrfA, a quorum-sensing (QS) circuit from Bacillus amyloliquefaciens, was constructed in this study. Two QS promoters MuPsrfA and MtPsrfA, with 35 and 100% increased activity, respectively, were obtained by mutating the original promoter PsrfA. Thus, the natural promoter of plipastatin was replaced by a QS promoter to achieve the dynamic regulation of plipastatin, which increased the yield of plipastatin by 3.5 times. Integrating ComQXPA into plipastatin mono-producing M-24:MtPsrfA increased the yield of plipastatin to 3850 mg/L, representing the highest yield reported to date. Four new plipastatins were identified via UPLC-ESI-MS/MS and GC-MS analysis of fermentation products of mono-producing engineered strains. Among them, three plipastatins contained two double bonds in the fatty acid side chain, representing the first example of a new type of plipastatin. Our results indicate that the QS system ComQXPA-PsrfA of Bacillus can dynamically regulate plipastatin production, and the pipeline could be extended to the other strains to regulate target products dynamically.
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Affiliation(s)
- Jingjie Zhou
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Guojun Wu
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Jie Zheng
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Dyaaaldin Abdalmegeed
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Mengxi Wang
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Shengwei Sun
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Rita-Cindy Aye-Ayire Sedjoah
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Yuting Shao
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Sen Sun
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Zhihong Xin
- Key Laboratory of Food Processing and Quality Control, College of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, P. R. China
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Guillén-Navarro K, López-Gutiérrez T, García-Fajardo V, Gómez-Cornelio S, Zarza E, De la Rosa-García S, Chan-Bacab M. Broad-Spectrum Antifungal, Biosurfactants and Bioemulsifier Activity of Bacillus subtilis subsp. spizizenii-A Potential Biocontrol and Bioremediation Agent in Agriculture. PLANTS (BASEL, SWITZERLAND) 2023; 12:1374. [PMID: 36987062 PMCID: PMC10056679 DOI: 10.3390/plants12061374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Revised: 03/11/2023] [Accepted: 03/14/2023] [Indexed: 06/19/2023]
Abstract
In this study, the antifungal, biosurfactant and bioemulsifying activity of the lipopeptides produced by the marine bacterium Bacillus subtilis subsp. spizizenii MC6B-22 is presented. The kinetics showed that at 84 h, the highest yield of lipopeptides (556 mg/mL) with antifungal, biosurfactant, bioemulsifying and hemolytic activity was detected, finding a relationship with the sporulation of the bacteria. Based on the hemolytic activity, bio-guided purification methods were used to obtain the lipopeptide. By TLC, HPLC and MALDI-TOF, the mycosubtilin was identified as the main lipopeptide, and it was further confirmed by NRPS gene clusters prediction based on the strain's genome sequence, in addition to other genes related to antimicrobial activity. The lipopeptide showed a broad-spectrum activity against ten phytopathogens of tropical crops at a minimum inhibitory concentration of 400 to 25 μg/mL and with a fungicidal mode of action. In addition, it exhibited that biosurfactant and bioemulsifying activities remain stable over a wide range of salinity and pH and it can emulsify different hydrophobic substrates. These results demonstrate the potential of the MC6B-22 strain as a biocontrol agent for agriculture and its application in bioremediation and other biotechnological fields.
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Affiliation(s)
- Karina Guillén-Navarro
- Grupo Académico de Biotecnología Ambiental, Departamento de Ciencias de la Sustentabilidad, El Colegio de la Frontera Sur Unidad Tapachula, Carretera Antiguo Aeropuerto km 2.5, Tapachula 30700, Chiapas, Mexico; (K.G.-N.); (E.Z.)
| | - Tomás López-Gutiérrez
- Facultad de Ciencias Biologicas, Universidad Autónoma de Campeche, Av. Agustín Melgar s/n, Col. Buenavista, Campeche 24030, Campeche, Mexico
| | - Verónica García-Fajardo
- Grupo Académico de Biotecnología Ambiental, Departamento de Ciencias de la Sustentabilidad, El Colegio de la Frontera Sur Unidad Tapachula, Carretera Antiguo Aeropuerto km 2.5, Tapachula 30700, Chiapas, Mexico; (K.G.-N.); (E.Z.)
| | - Sergio Gómez-Cornelio
- Ingeniería en Biotecnología, Universidad Politécnica del Centro, Carretera Federal Villahermosa-Teapa km 22.5, Villahermosa 86290, Tabasco, Mexico;
- Laboratorio de Nanotecnología-CICTAT, División Académica de Ingeniería y Arquitectura, Universidad Juárez Autónoma de Tabasco, Carr. Cunduacán-Jalpa de Méndez km 1, Cunduacán 86690, Tabasco, Mexico
| | - Eugenia Zarza
- Grupo Académico de Biotecnología Ambiental, Departamento de Ciencias de la Sustentabilidad, El Colegio de la Frontera Sur Unidad Tapachula, Carretera Antiguo Aeropuerto km 2.5, Tapachula 30700, Chiapas, Mexico; (K.G.-N.); (E.Z.)
- Investigadora CONACyT—El Colegio de la Frontera Sur. Av. Insurgentes Sur 1582, Col. Crédito Constructor, Benito Juárez, Mexico City 03940, Mexico City, Mexico
| | - Susana De la Rosa-García
- Laboratorio de Microbiología Aplicada, División Académica de Ciencias Biológicas, Universidad Juárez Autónoma de Tabasco, Carretera Villahermosa-Cárdenas km 0.5, Villahermosa 86000, Tabasco, Mexico
| | - Manuel Chan-Bacab
- Departamento de Microbiología Ambiental y Biotecnología, Universidad Autónoma de Campeche, Av. Agustín Melgar s/n, Col. Buenavista, Campeche 24030, Campeche, Mexico
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Biosurfactant Production by Bacillus amyloliquefaciens C11 and Streptomyces lavendulae C27 Isolated from a Biopurification System for Environmental Applications. Microorganisms 2022; 10:microorganisms10101892. [DOI: 10.3390/microorganisms10101892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 08/20/2022] [Accepted: 08/22/2022] [Indexed: 11/16/2022] Open
Abstract
Biosurfactant-producing bacteria can be found in contaminated environments such as biopurification systems (BPS) for pesticide treatments. A total of 18 isolates were screened to determine their ability to produce extracellular biosurfactants, using olive oil as the main carbon source. Out of the eighteen isolates, two strains (C11 and C27) were selected for biosurfactant production. The emulsification activities of the C11 and C27 strains using sunflower oil was 58.4 and 53.7%, respectively, and 46.6 and 48.0% using olive oil. Using molecular techniques and MALDI-TOF, the strains were identified as Bacillus amyloliquefaciens (C11) and Streptomyces lavendulae (C27). The submerged cultivation of the two selected strains was carried out in a 1 L stirred-tank bioreactor. The maximum biosurfactant production, indicated by the lowest surface tension measurement, was similar (46 and 45 mN/m) for both strains, independent of the fact that the biomass of the B. amyloliquefaciens C11 strain was 50% lower than the biomass of the S. lavendulae C27 strain. The partially purified biosurfactants produced by B. amyloliquefaciens C11 and S. lavendulae C27 were characterized as a lipopeptide and a glycolipid, respectively. These outcomes highlight the potential of the selected biosurfactant-producing microorganisms for improving pesticides’ bioavailability and therefore the degradational efficacy of BPS.
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Dussert E, Tourret M, Dupuis C, Noblecourt A, Behra-Miellet J, Flahaut C, Ravallec R, Coutte F. Evaluation of Antiradical and Antioxidant Activities of Lipopeptides Produced by Bacillus subtilis Strains. Front Microbiol 2022; 13:914713. [PMID: 35794911 PMCID: PMC9251515 DOI: 10.3389/fmicb.2022.914713] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/18/2022] [Indexed: 01/07/2023] Open
Abstract
This study investigated the antiradical and antioxidant potential of the three families of lipopeptides (i.e., surfactin, mycosubtilin, and plipastatin/fengycin) produced by Bacillus subtilis strains. The antiradical/antioxidant activities of highly purified lipopeptides were studied in acellular models using a 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical, superoxide anion (O 2 . - ), hydrogen peroxide, (H2O2) and hydroxyl radical (HO.). At a lipopeptide concentration of 500 mg.L-1, the maximum inhibition of DPPH reached 22.88% (obtained for plipastatin). Moreover, the scavenging effects ofO 2 . - , H2O2, and HO. at the highest concentration tested (250 mg.L-1) were found to be 6, 21, and 3% for surfactin, 19, 9, and 15% for mycosubtilin, 21, 18, and 59% for plipastatin, 21, 31, and 61% for the mixture of surfactin/plipastatin, and 13, 16, and 15% for the mixture of surfactin/mycosubtilin, respectively. These results showed that plipastatin was the best candidate due to its antioxidant activities.
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Affiliation(s)
- Elodie Dussert
- Univ. Lille, Univ. Artois, UMRT 1158 BioEcoAgro - Bénéfice santé d'hydrolysats de protéines et coproduits agro-alimentaires, Institut Charles Viollette, Lille, France
| | - Mélissa Tourret
- Univ. Lille, Univ. Artois, UMRT 1158 BioEcoAgro - Bénéfice santé d'hydrolysats de protéines et coproduits agro-alimentaires, Institut Charles Viollette, Lille, France
| | - Chloé Dupuis
- Univ. Lille, UMRT 1158 BioEcoAgro - Métabolites secondaires d'origine microbienne, Institut Charles Viollette, Lille, France
| | | | - Josette Behra-Miellet
- Univ. Lille, Univ. Artois, UMRT 1158 BioEcoAgro - Bénéfice santé d'hydrolysats de protéines et coproduits agro-alimentaires, Institut Charles Viollette, Lille, France
| | - Christophe Flahaut
- Univ. Lille, Univ. Artois, UMRT 1158 BioEcoAgro - Bénéfice santé d'hydrolysats de protéines et coproduits agro-alimentaires, Institut Charles Viollette, Lille, France
| | - Rozenn Ravallec
- Univ. Lille, Univ. Artois, UMRT 1158 BioEcoAgro - Bénéfice santé d'hydrolysats de protéines et coproduits agro-alimentaires, Institut Charles Viollette, Lille, France
| | - François Coutte
- Univ. Lille, UMRT 1158 BioEcoAgro - Métabolites secondaires d'origine microbienne, Institut Charles Viollette, Lille, France
- LIPOFABRIK, Lesquin, France
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Denoirjean T, Ameline A, Couty A, Dubois F, Coutte F, Doury G. Effects of surfactins, Bacillus lipopeptides, on the behavior of an aphid and host selection by its parasitoid. PEST MANAGEMENT SCIENCE 2022; 78:929-937. [PMID: 34719104 DOI: 10.1002/ps.6702] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 10/25/2021] [Accepted: 10/30/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Lipopeptides extracted from the Bacillus genus are emerging biopesticides, especially in protecting crops against phytopathogens. Among the three main families of lipopeptides, surfactins have been identified as having insecticidal properties against several insect orders. However, the sublethal effects of these promising biopesticides on insect pests and their natural enemies remain largely unknown. The aim of this study was to evaluate the effects of surfactins topically applied on black bean aphid Aphis fabae mortality. First, the effects of surfactins on aphid mortality were determined by delivering increasing concentrations to adults and nymphs. Second, the sublethal effects of surfactins on locomotor activity and feeding behavior of surviving aphids were evaluated using the electropenetrography method. Finally, the effect of host exposure to surfactins on host selection behavior by Aphidius matricariae parasitoid females was analyzed. RESULTS Four surfactins concentrations were studied (0.5, 1, 2.5 and 5 g L-1 ). There was concentration-dependent mortality in response to surfactins at 24 h after treatment. Surfactins impacted aphid behavior when delivered at 1 g L-1 by inducing a greater locomotor activity and a reduction in feeding activity. By contrast, at the third trophic level, exposure of aphid hosts to surfactins did not affect behaviors leading to host recognition and acceptance by parasitoid females. CONCLUSION This study highlighted the consequences of aphid exposure to surfactins in the context of bottom-up regulation. Although surfactins could directly impact aphid behavior, they had no apparent consequences on the host selection behavior exhibited by parasitoid wasps.
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Affiliation(s)
- Thomas Denoirjean
- UMR CNRS 7058 EDYSAN (Écologie et Dynamique des Systèmes Anthropisés), SFR Condorcet FR CNRS 3417, Université de Picardie Jules Verne, Amiens, France
| | - Arnaud Ameline
- UMR CNRS 7058 EDYSAN (Écologie et Dynamique des Systèmes Anthropisés), SFR Condorcet FR CNRS 3417, Université de Picardie Jules Verne, Amiens, France
| | - Aude Couty
- UMR CNRS 7058 EDYSAN (Écologie et Dynamique des Systèmes Anthropisés), SFR Condorcet FR CNRS 3417, Université de Picardie Jules Verne, Amiens, France
| | - Françoise Dubois
- UMR CNRS 7058 EDYSAN (Écologie et Dynamique des Systèmes Anthropisés), SFR Condorcet FR CNRS 3417, Université de Picardie Jules Verne, Amiens, France
| | - François Coutte
- Université de Lille, UMRt 1158 BioEcoAgro - INRAE, équipe Métabolites secondaires d'origine microbienne, SFR Condorcet FR CNRS 3417, Institut Charles Viollette, Lille, France
| | - Géraldine Doury
- UMR CNRS 7058 EDYSAN (Écologie et Dynamique des Systèmes Anthropisés), SFR Condorcet FR CNRS 3417, Université de Picardie Jules Verne, Amiens, France
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Valdés-Velasco LM, Favela-Torres E, Théatre A, Arguelles-Arias A, Saucedo-Castañeda JG, Jacques P. Relationship between lipopeptide biosurfactant and primary metabolite production by Bacillus strains in solid-state and submerged fermentation. BIORESOURCE TECHNOLOGY 2022; 345:126556. [PMID: 34923080 DOI: 10.1016/j.biortech.2021.126556] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 12/07/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
The relationship between lipopeptide and primary metabolite production by Bacillus spp. in solid-state fermentation (SSF) and submerged fermentation (SmF) was evaluated. Four wild-type strains and one mutant strain (unable to develop biofilm) were assessed in SSF and SmF, using a defined medium and polyurethane foam as inert support for SSF. Strain ATCC 21,332 in SSF presented the highest lipopeptide production. The wild-type strains revealed higher lipopeptide and biomass production and lower synthesis of primary metabolites in SSF than in SmF. However, the mutant strain showed a slightly higher production of primary metabolites in SSF than in SmF. Carbon balance analysis showed that the carbon flux was mainly directed to lipopeptides in SSF, whereas in SmF, it was directed to the production of primary metabolites and the carbon flux to lipopeptides is inversely related to primary metabolites in both types of cultures.
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Affiliation(s)
- Luisa Marcela Valdés-Velasco
- Department of Biotechnology, Universidad Autonoma Metropolitana, Unidad Iztapalapa, Avenida San Rafael Atlixco 186, Colonia Vicentina, 09340, Mexico City, Mexico
| | - Ernesto Favela-Torres
- Department of Biotechnology, Universidad Autonoma Metropolitana, Unidad Iztapalapa, Avenida San Rafael Atlixco 186, Colonia Vicentina, 09340, Mexico City, Mexico.
| | - Ariane Théatre
- Microbial Processes and Interactions, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro, UMRt 1158, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté d́ Agronomie, 2B, B-5030 Gembloux, Belgium
| | - Anthony Arguelles-Arias
- Microbial Processes and Interactions, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro, UMRt 1158, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté d́ Agronomie, 2B, B-5030 Gembloux, Belgium
| | - Jesús Gerardo Saucedo-Castañeda
- Department of Biotechnology, Universidad Autonoma Metropolitana, Unidad Iztapalapa, Avenida San Rafael Atlixco 186, Colonia Vicentina, 09340, Mexico City, Mexico
| | - Philippe Jacques
- Microbial Processes and Interactions, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro, UMRt 1158, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté d́ Agronomie, 2B, B-5030 Gembloux, Belgium
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Antifungal Compounds of Plant Growth-Promoting Bacillus Species. Fungal Biol 2022. [DOI: 10.1007/978-3-031-04805-0_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Guez JS, Vassaux A, Larroche C, Jacques P, Coutte F. New Continuous Process for the Production of Lipopeptide Biosurfactants in Foam Overflowing Bioreactor. Front Bioeng Biotechnol 2021; 9:678469. [PMID: 34124025 PMCID: PMC8194703 DOI: 10.3389/fbioe.2021.678469] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 04/12/2021] [Indexed: 11/13/2022] Open
Abstract
In this work, an original culture process in bioreactor named overflowing continuous culture (O-CC) was developed to produce and recover continuously mycosubtilin, a lipopeptide antifungal biosurfactant of major interest. The lipopeptide production was first investigated in shake conical flasks in different culture media [ammonium citrate sucrose (ACS), Difco sporulation medium (DSM), and Landy], followed by a pH condition optimization using 3-(N-morpholino)propanesulfonic acid (MOPS) and 2-(N-morpholino)ethanesulfonic acid (MES) buffered media. A simple theoretical modeling of the biomass evolution combined with an experimental setup was then proposed for O-CC processed in stirred tank reactor at laboratory scale. Seven O-CC experiments were done in modified Landy medium at the optimized pH 6.5 by applying dilution rates comprised between 0.05 and 0.1 h-1. The O-CC allowed the continuous recovery of the mycosubtilin contained in the foam overflowing out of the reactor, achieving a remarkable in situ product removal superior to 99%. The biomass concentration in the overflowing foam was found to be twofold lower than the biomass concentration in the reactor, relating advantageously this process to a continuous one with biomass feedback. To evaluate its performances regarding the type of lipopeptide produced, the O-CC process was tested with strain BBG116, a mycosubtilin constitutive overproducing strain that also produces surfactin, and strain BBG125, its derivative strain obtained by deleting surfactin synthetase operon. At a dilution rate of 0.1 h-1, specific productivity of 1.18 mg of mycosubtilin⋅g-1(DW)⋅h-1 was reached. Compared with other previously described bioprocesses using almost similar culture conditions and strains, the O-CC one allowed an increase of the mycosubtilin production rate by 2.06-fold.
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Affiliation(s)
- Jean-Sébastien Guez
- Université Clermont Auvergne, Clermont Auvergne INP, CNRS, Institut Pascal, Clermont-Ferrand, France
| | - Antoine Vassaux
- Université de Lille, UMRt BioEcoAgro 1158-INRAE, équipe Métabolites Secondaires d'origine Microbienne, Institut Charles Viollette, Lille, France
| | - Christian Larroche
- Université Clermont Auvergne, Clermont Auvergne INP, CNRS, Institut Pascal, Clermont-Ferrand, France
| | - Philippe Jacques
- Université de Liège, UMRt BioEcoAgro 1158-INRAE, équipe Métabolites Secondaires d'origine Microbienne, TERRA Teaching and Research Centre, MiPI, Gembloux Agro-Bio Tech, Gembloux, Belgium.,Lipofabrik, Polytech-Lille, Cité Scientifique, Villeneuve d'Ascq, France
| | - François Coutte
- Université de Lille, UMRt BioEcoAgro 1158-INRAE, équipe Métabolites Secondaires d'origine Microbienne, Institut Charles Viollette, Lille, France.,Lipofabrik, Polytech-Lille, Cité Scientifique, Villeneuve d'Ascq, France
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19
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Adu FA, Hunter CH. Screening and Identification of Lipopeptide Biosurfactants Produced by Two Aerobic Endospore-Forming Bacteria Isolated from Mfabeni Peatland, South Africa. Curr Microbiol 2021; 78:2615-2622. [PMID: 33988742 DOI: 10.1007/s00284-021-02516-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Accepted: 04/26/2021] [Indexed: 10/21/2022]
Abstract
Two aerobic endospore-forming bacteria (AEFB), isolates SAB19 and SAD18, capable of biosurfactant production were isolated from a sediment core sampled from Mfabeni peatland, St Lucia, KwaZulu-Natal, South Africa. The isolates were screened for biosurfactant activity using drop collapse assay, hemolysis assay, oil spreading assay, emulsification, and surface tension measurement. The effect of environmental parameters--temperature [35 - 100 °C], pH [3.0 - 10.0], and salinity [0.5 - 15%]--on biosurfactant stability was also determined. Ultra-performance liquid chromatography in conjunction with electrospray ionization time-of-flight mass spectrometry (UPLC ESI-TOF MS) analysis revealed that both isolates produced surfactin isomers and a common mass peak of m/z 1326.1 that was ascribed to a precursor of the antibiotic plantazolicin (PZN). Isolate SAD18 was also found to produce the lipopeptides fengycin and iturin. Taxonomic classification based on partial 16S rRNA gene sequencing revealed that isolates SAB19 and SAD18 belonged to the Brevibacillus and Bacillus genera, respectively. The GenBank accession numbers obtained for SAB19 and SAD18 are MW429226 and MW441217. Biosurfactant extracts from isolate SAD18 exhibited the greatest level of surfactant activity and stability over the range of environmental parameters tested. Although no novel biosurfactants were identified, it was confirmed that the peatland environment represents an untapped source of microbial diversity with potential biotechnological applications.
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Affiliation(s)
- Folasade A Adu
- Discipline of Microbiology, School of Life Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal (Westville Campus), Private Bag X54001, Durban, 4000, South Africa.
| | - Charles H Hunter
- Discipline of Microbiology, School of Life Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal (Pietermaritzburg Campus), Private Bag X01, Pietermaritzburg, 3209, South Africa
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20
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Diallo MM, Vural C, Şahar U, Ozdemir G. Kurstakin molecules facilitate diesel oil assimilation by Acinetobacter haemolyticus strain 2SA through overexpression of alkane hydroxylase genes. ENVIRONMENTAL TECHNOLOGY 2021; 42:2031-2045. [PMID: 31752596 DOI: 10.1080/09593330.2019.1689301] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 10/30/2019] [Indexed: 06/10/2023]
Abstract
Biodegradation is a cost-effective process commonly used to eliminate many xenobiotic hydrocarbons such as diesel oils. However, their hydrophobic character reduces the biodegradation efficiency. In order to overcome this hurdle, kurstakins isolated from Bacillus thuringiensis strain 7SA were used as emulsifying agents. The influence of kurstakin molecules on diesel oil degradation by Acinetobacter haemolyticus strain 2SA was evaluated in the presence and absence of the aforementioned lipopeptide. The degradation rates and gene expressions of alkane hydroxylases were evaluated at days 4, 10, 14 and 21. Results showed that kurstakin molecules increased the hydrophobicity of 2SA. Moreover, diesel oil degradation activities were higher in the presence of kurstakin with 29%, 35%, 29% and 23% improvement at 4th, 10th, 14th and 21st day respectively. Statistical analysis indicated that the difference between the degradation rates in the presence and absence of kurstakin was significant with p = 0.03. The detection of three different hydroxylase genes namely alkB, almA and cyp153 in 2SA genome, might have allowed more efficient degradability of alkanes. According to the real-time PCR results, cyp153 was the most induced gene during diesel oil degradation in the presence and absence of kurstakin. Yet, the three genes demonstrated higher levels of expression in the presence of kurstakin when compared to its absence. This study showed that kurstakins enhance the diesel oil biodegradation rate by increasing the hydrophobicity of 2SA. In addition to their anti-fungal activities, kurstakins can be used as biosurfactant to increase biodegradation of diesel oil.
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Affiliation(s)
- Mamadou Malick Diallo
- Department of Biology, Basic and Industrial Microbiology Section, Ege University, Izmir, Turkey
| | - Caner Vural
- Department of Biology, Basic and Industrial Microbiology Section, Ege University, Izmir, Turkey
| | - Umut Şahar
- Department of Biology, Molecular Biology Section, Ege University, Izmir, Turkey
| | - Guven Ozdemir
- Department of Biology, Basic and Industrial Microbiology Section, Ege University, Izmir, Turkey
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21
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Chen L, Zhang H, Zhao S, Xiang B, Yao Z. Lipopeptide production by Bacillus atrophaeus strain B44 and its biocontrol efficacy against cotton rhizoctoniosis. Biotechnol Lett 2021; 43:1183-1193. [PMID: 33738609 DOI: 10.1007/s10529-021-03114-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Accepted: 03/06/2021] [Indexed: 11/26/2022]
Abstract
OBJECTIVES An assay was conducted to show the comparisons the effects of nine metal ions on antagonistic metabolites (lipopeptides, siderophores and gibberellins) by Bacillus atrophaeus strain B44 using well-diffusion assays, matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) analysis, chrome azurol S plus mannitol salt agar (CAS-MSA) tests, and reversed-phase high-performance liquid chromatography (RP-HPLC) analysis. This assay is also designed to demonstrate the biocontrol efficacy of B44 against cotton rhizoctoniosis using pot culture tests. RESULTS Both the lipopeptide yield and the antimicrobial activity of B44 increase with the MnSO4, MgSO4, CaCO3, and CuSO4 treatments and either have no effect or decreased lipopeptide yield and antimicrobial activity with the FeSO4, K2HPO4, KCl, KH2PO4 and ZnSO4 treatments. The medium containing MgSO4 has no significant effect on either the lipopeptide yield or antimicrobial activity. MALDI-TOF-MS analysis shows a broad range of m/z peaks, indicating that strain B44 produces a complex mixture of iturin, surfactin, and fengycin lipopeptides. Gibberellin production by strain B44 varies greatly depending on the culture medium, and the siderophore production is not significantly affected by the culture medium. Pot tests show that lipopeptide production affects the disease control efficacy of strain B44. CONCLUSION The biocontrol efficacy of B. atrophaeus strain B44 is related to the lipopeptide yield. Moreover, B. atrophaeus strain B44 significantly increases the size of cotton seedlings, which is related to the GA3 concentration.
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Affiliation(s)
- Li Chen
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization/College of Agriculture, Shihezi University, Shihezi, 832003, China.
| | - Hui Zhang
- Institute of Agricultural Resources and Environment, Chongqing Academy of Agricultural Sciences, Chongqing, 401329, China
| | - Sifeng Zhao
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization/College of Agriculture, Shihezi University, Shihezi, 832003, China.
| | - Benchun Xiang
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization/College of Agriculture, Shihezi University, Shihezi, 832003, China
| | - Zhaoqun Yao
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization/College of Agriculture, Shihezi University, Shihezi, 832003, China
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22
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Chen MC, Liu TT, Wang JP, Chen YP, Chen QX, Zhu YJ, Liu B. Strong inhibitory activities and action modes of lipopeptides on lipase. J Enzyme Inhib Med Chem 2020; 35:897-905. [PMID: 32216480 PMCID: PMC7170388 DOI: 10.1080/14756366.2020.1734798] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Lipopeptides have been reported to exhibit anti-obesity effects. In this study, we obtained a Bacillus velezensis strain FJAT-52631 that could coproduce iturins, fengycins, and surfactins. Results showed that the FJAT-52631 crude lipopeptide, purified fengycin, iturin, and surfactin standards exhibited strong inhibition activities against lipase with dose-dependence manners (half maximal inhibitory concentration (IC50) = 0.011, 0.005, 0.056, and 0.005 mg/mL, respectively). Moreover, fengycin and surfactin had the comparable activities with orlistat, but iturin not. It was revealed that the inhibition mechanism and type of the lipopeptides were reversible and competitive. The quenching mechanism of lipase was static and only one binding site between lipase and lipopoeptide was inferred from the fluorescence analysis. The docking analysis displayed that fengycin and surfactin could directly interact with the active amino acid residues (Ser or Asp) of lipase, but not with iturin. Our work suggests that the B. velezensis lipopeptides would have great potential to act as lipase inhibitors.
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Affiliation(s)
- Mei-Chun Chen
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Tian-Tian Liu
- College of Biological Science and Engineering, Xiamen University, Xiamen, China
| | - Jie-Ping Wang
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Yan-Ping Chen
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Qing-Xi Chen
- College of Biological Science and Engineering, Xiamen University, Xiamen, China
| | - Yu-Jing Zhu
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Bo Liu
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
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23
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Vahidinasab M, Lilge L, Reinfurt A, Pfannstiel J, Henkel M, Morabbi Heravi K, Hausmann R. Construction and description of a constitutive plipastatin mono-producing Bacillus subtilis. Microb Cell Fact 2020; 19:205. [PMID: 33167976 PMCID: PMC7654001 DOI: 10.1186/s12934-020-01468-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 10/29/2020] [Indexed: 01/29/2023] Open
Abstract
BACKGROUND Plipastatin is a potent Bacillus antimicrobial lipopeptide with the prospect to replace conventional antifungal chemicals for controlling plant pathogens. However, the application of this lipopeptide has so far been investigated in a few cases, principally because of the yield in low concentration and unknown regulation of biosynthesis pathways. B. subtilis synthesizes plipastatin by a non-ribosomal peptide synthetase encoded by the ppsABCDE operon. In this study, B. subtilis 3NA (a non-sporulation strain) was engineered to gain more insights about plipastatin mono-production. RESULTS The 4-phosphopantetheinyl transferase Sfp posttranslationally converts non-ribosomal peptide synthetases from inactive apoforms into their active holoforms. In case of 3NA strain, sfp gene is inactive. Accordingly, the first step was an integration of a repaired sfp version in 3NA to construct strain BMV9. Subsequently, plipastatin production was doubled after integration of a fully expressed degQ version from B. subtilis DSM10T strain (strain BMV10), ensuring stimulation of DegU-P regulatory pathway that positively controls the ppsABSDE operon. Moreover, markerless substitution of the comparably weak native plipastatin promoter (Ppps) against the strong constitutive promoter Pveg led to approximately fivefold enhancement of plipastatin production in BMV11 compared to BMV9. Intriguingly, combination of both repaired degQ expression and promoter exchange (Ppps::Pveg) did not increase the plipastatin yield. Afterwards, deletion of surfactin (srfAA-AD) operon by the retaining the regulatory comS which is located within srfAB and is involved in natural competence development, resulted in the loss of plipastatin production in BMV9 and significantly decreased the plipastatin production of BMV11. We also observed that supplementation of ornithine as a precursor for plipastatin formation caused higher production of plipastatin in mono-producer strains, albeit with a modified pattern of plipastatin composition. CONCLUSIONS This study provides evidence that degQ stimulates the native plipastatin production. Moreover, a full plipastatin production requires surfactin synthetase or some of its components. Furthermore, as another conclusion of this study, results point towards ornithine provision being an indispensable constituent for a plipastatin mono-producer B. subtilis strain. Therefore, targeting the ornithine metabolic flux might be a promising strategy to further investigate and enhance plipastatin production by B. subtilis plipastatin mono-producer strains.
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Affiliation(s)
- Maliheh Vahidinasab
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany
| | - Lars Lilge
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany.
| | - Aline Reinfurt
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany
| | - Jens Pfannstiel
- Core Facility Hohenheim, Mass Spectrometry Unit, University of Hohenheim, August-von-Hartmann-Str. 3, 70599, Stuttgart, Germany
| | - Marius Henkel
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany
| | - Kambiz Morabbi Heravi
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany
| | - Rudolf Hausmann
- Institute of Food Science and Biotechnology, Department of Bioprocess Engineering (150K), University of Hohenheim, Fruwirthstraße 12, 70599, Stuttgart, Germany
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24
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Liscano Y, Oñate-Garzón J, Delgado JP. Peptides with Dual Antimicrobial-Anticancer Activity: Strategies to Overcome Peptide Limitations and Rational Design of Anticancer Peptides. Molecules 2020; 25:E4245. [PMID: 32947811 PMCID: PMC7570524 DOI: 10.3390/molecules25184245] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 09/04/2020] [Accepted: 09/11/2020] [Indexed: 12/31/2022] Open
Abstract
Peptides are naturally produced by all organisms and exhibit a wide range of physiological, immunomodulatory, and wound healing functions. Furthermore, they can provide with protection against microorganisms and tumor cells. Their multifaceted performance, high selectivity, and reduced toxicity have positioned them as effective therapeutic agents, representing a positive economic impact for pharmaceutical companies. Currently, efforts have been made to invest in the development of new peptides with antimicrobial and anticancer properties, but the poor stability of these molecules in physiological environments has triggered a bottleneck. Therefore, some tools, such as nanotechnology and in silico approaches can be applied as alternatives to try to overcome these obstacles. In silico studies provide a priori knowledge that can lead to the development of new anticancer peptides with enhanced biological activity and improved stability. This review focuses on the current status of research in peptides with dual antimicrobial-anticancer activity, including advances in computational biology using in silico analyses as a powerful tool for the study and rational design of these types of peptides.
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Affiliation(s)
- Yamil Liscano
- Research Group of Chemical and Biotechnology, Faculty of Basic Sciences, Universidad Santiago de Cali, 760035 Cali, Colombia;
- Research Group of Genetics, Regeneration and Cancer, Institute of Biology, Universidad de Antioquia, 050010 Medellin, Colombia;
| | - Jose Oñate-Garzón
- Research Group of Chemical and Biotechnology, Faculty of Basic Sciences, Universidad Santiago de Cali, 760035 Cali, Colombia;
| | - Jean Paul Delgado
- Research Group of Genetics, Regeneration and Cancer, Institute of Biology, Universidad de Antioquia, 050010 Medellin, Colombia;
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25
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Brück HL, Coutte F, Dhulster P, Gofflot S, Jacques P, Delvigne F. Growth Dynamics of Bacterial Populations in a Two-Compartment Biofilm Bioreactor Designed for Continuous Surfactin Biosynthesis. Microorganisms 2020; 8:microorganisms8050679. [PMID: 32392736 PMCID: PMC7285194 DOI: 10.3390/microorganisms8050679] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 04/28/2020] [Accepted: 05/01/2020] [Indexed: 11/16/2022] Open
Abstract
Biofilm bioreactors are promising systems for continuous biosurfactant production since they provide process stability through cell immobilization and avoid foam formation. In this work, a two-compartment biofilm bioreactor was designed consisting of a stirred tank reactor and a trickle-bed reactor containing a structured metal packing for biofilm formation. A strong and poor biofilm forming B. subtilis 168 strain due to restored exopolysaccharides (EPS) production or not were cultivated in the system to study the growth behavior of the planktonic and biofilm population for the establishment of a growth model. A high dilution rate was used in order to promote biofilm formation on the packing and wash out unwanted planktonic cells. Biofilm development kinetics on the packing were assessed through a total organic carbon mass balance. The EPS+ strain showed a significantly improved performance in terms of adhesion capacity and surfactin production. The mean surfactin productivity of the EPS+ strain was about 37% higher during the continuous cultivation compared to the EPS- strain. The substrate consumption together with the planktonic cell and biofilm development were properly predicted by the model (α = 0.05). The results show the efficiency of the biofilm bioreactor for continuous surfactin production using an EPS producing strain.
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Affiliation(s)
- Hannah Luise Brück
- MiPI, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro N° 1158, Gembloux Agro-Bio Tech, University Liège, University Lille, INRAE, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, B-5030 Gembloux, Belgium; (H.L.B.); (P.J.)
- ICV—Institut Charles Viollette, Joint Research Unit BioEcoAgro N° 1158, University Lille, INRAE, University Liège, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, F-59000 Lille, France; (F.C.); (P.D.)
| | - François Coutte
- ICV—Institut Charles Viollette, Joint Research Unit BioEcoAgro N° 1158, University Lille, INRAE, University Liège, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, F-59000 Lille, France; (F.C.); (P.D.)
| | - Pascal Dhulster
- ICV—Institut Charles Viollette, Joint Research Unit BioEcoAgro N° 1158, University Lille, INRAE, University Liège, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, F-59000 Lille, France; (F.C.); (P.D.)
| | - Sébastien Gofflot
- Walloon Agricultural Research Center (CRA-W), Agricultural Product Technology Unit, Chaussée de Namur, 24, B-5030 Gembloux, Belgium;
| | - Philippe Jacques
- MiPI, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro N° 1158, Gembloux Agro-Bio Tech, University Liège, University Lille, INRAE, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, B-5030 Gembloux, Belgium; (H.L.B.); (P.J.)
| | - Frank Delvigne
- MiPI, TERRA Teaching and Research Centre, Joint Research Unit BioEcoAgro N° 1158, Gembloux Agro-Bio Tech, University Liège, University Lille, INRAE, UPJV, YNCREA, University Artois, University Littoral Côte d’Opale, B-5030 Gembloux, Belgium; (H.L.B.); (P.J.)
- Correspondence:
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26
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Ait Kaki A, Smargiasso N, Ongena M, Kara Ali M, Moula N, De Pauw E, Kacem Chaouche N. Characterization of New Fengycin Cyclic Lipopeptide Variants Produced by Bacillus amyloliquefaciens (ET) Originating from a Salt Lake of Eastern Algeria. Curr Microbiol 2020; 77:443-451. [PMID: 31894376 DOI: 10.1007/s00284-019-01855-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 12/19/2019] [Indexed: 11/27/2022]
Abstract
Fengycin antibiotic displays a strong antifungal activity and inhibits the growth of a wide range of plant pathogens especially filamentous fungi. The main objective of the present study is to characterize fengycin variants produced by B. amyloliquefaciens strain (ET). LC-MS analysis of fengycin extracts has shown several molecular ion peaks corresponding to conventional fengycin homologues (MH + : m/z 1463.9; 1491.9; 1506) and some new ones (MH + : m/z 1433; 1447; 1461; and 1477). Further characterization of these precursor ions was carried out by LC-MS.MS analysis. Reporter fragment ions were observed (named A and B), they correspond to the cleavage of Orn2-Tyr3 (A), Glu1-Orn2 (B), and used for identifying fengycin variants. The reporter fragment couple ions [A/B] at [m/z 966.5/1080.5] and [m/z 994.4 /1108.5] represent fengycin A and B, respectively. The diagnostic ions at ([m/z 980/1094]) may correspond to fengycin C3, D, S or B2. Interestingly, unknown diagnostic product ions at [m/z 951/1065] and [m/z 979/1093] were detected for the first time in this study which prove that they correspond to new fengycin variants, named fengycin X and fengycin Y, respectively. The fengycin X results from a substitution of the glutamine amino acid (Q), at position 8 of the fengycin A peptide part, by an isoleucine (I) or a leucine (L) residue. This mutation should be the same in fengycin Y but compared to fengycin B.
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Affiliation(s)
- Asma Ait Kaki
- Faculty of Sciences, Department of Biology, University of M'Hamed Bougara, 35000, Boumerdès, Algeria. .,Bioindustries Unit, Gembloux Agrobiotech, University of Liege, Passage of the Deportees 2, 5030, Gembloux, Belgium. .,Laboratory of Mycology, Biology and Biotechnology, Faculty of Natural and Life Sciences, Department of Applied Biology, University of Mentouri 1, 25000, Constantine, Algeria.
| | - Nicolas Smargiasso
- Mass Spectrometry Laboratory, Molecular Systems Research Unit, University of Liege, B6C, B 400, Liege, Belgium
| | - Marc Ongena
- Bioindustries Unit, Gembloux Agrobiotech, University of Liege, Passage of the Deportees 2, 5030, Gembloux, Belgium
| | - Mounira Kara Ali
- Laboratory of Mycology, Biology and Biotechnology, Faculty of Natural and Life Sciences, Department of Applied Biology, University of Mentouri 1, 25000, Constantine, Algeria
| | - Nassim Moula
- Department of Animal Productions, Faculty of Veterinary Medicine, University of Liege, Colonster Boulevard 20, 4000, Liege, Belgium
| | - Edwin De Pauw
- Mass Spectrometry Laboratory, Molecular Systems Research Unit, University of Liege, B6C, B 400, Liege, Belgium
| | - Noreddine Kacem Chaouche
- Laboratory of Mycology, Biology and Biotechnology, Faculty of Natural and Life Sciences, Department of Applied Biology, University of Mentouri 1, 25000, Constantine, Algeria
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27
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Hmidet N, Jemil N, Ouerfelli M, Pilar Almajano M, Nasri M. Antioxidant properties of
Enterobacter cloacae
C3 lipopeptides in vitro and in model food emulsion. J FOOD PROCESS PRES 2019. [DOI: 10.1111/jfpp.14337] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Noomen Hmidet
- Laboratoire de Génie Enzymatique et de Microbiologie Ecole Nationale d’Ingénieurs de Sfax, Université de Sfax Sfax Tunisia
| | - Nawel Jemil
- Laboratoire de Génie Enzymatique et de Microbiologie Ecole Nationale d’Ingénieurs de Sfax, Université de Sfax Sfax Tunisia
| | - Manel Ouerfelli
- Research Unit « Nutrition et Métabolisme Azotés et Protéines de Stress » (UR/ES‐13/29), Biology Department, Faculty of Sciences of Tunis University of Tunis El‐Manar Tunis Tunisia
- School of Industrial Engineering of Barcelona (ETSEIB), Chemical Engineering Department (DEQ) Technical University of Catalonia (UPC) Barcelona Spain
| | - María Pilar Almajano
- School of Industrial Engineering of Barcelona (ETSEIB), Chemical Engineering Department (DEQ) Technical University of Catalonia (UPC) Barcelona Spain
| | - Moncef Nasri
- Laboratoire de Génie Enzymatique et de Microbiologie Ecole Nationale d’Ingénieurs de Sfax, Université de Sfax Sfax Tunisia
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28
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Brück HL, Delvigne F, Dhulster P, Jacques P, Coutte F. Molecular strategies for adapting Bacillus subtilis 168 biosurfactant production to biofilm cultivation mode. BIORESOURCE TECHNOLOGY 2019; 293:122090. [PMID: 31499329 DOI: 10.1016/j.biortech.2019.122090] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 08/28/2019] [Accepted: 08/29/2019] [Indexed: 06/10/2023]
Abstract
Biofilm bioreactors have already been proven to be efficient systems for microbial lipopeptide production since they avoid foam formation. However, the cell adhesion capacities of the laboratory strain B.subtilis 168 to the biofilm bioreactor support are limited. In this work, we present a novel approach for increasing cell adhesion through the generation of filamentous and/or exopolysaccharide producing B.subtilis 168 mutants by genetic engineering. The single cell growth behavior was analyzed using time-lapse microscopy and the colonization capacities were investigated under continuous flow conditions in a drip-flow reactor. Cell adhesion could be increased three times through filamentous growth in lipopeptide producing B. subtilis 168 derivatives strains. Further restored exopolysaccharide production increased up to 50 times the cell adhesion capacities. Enhanced cell immobilization resulted in 10 times increased surfactin production. These findings will be of particular interest regarding the design of more efficient microbial cell factories for biofilm cultivation.
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Affiliation(s)
- Hannah Luise Brück
- MiPI, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté, 2B, B-5030 Gembloux, Belgium; Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Frank Delvigne
- MiPI, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté, 2B, B-5030 Gembloux, Belgium
| | - Pascal Dhulster
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 ICV - Institut Charles Viollette, F-59000 Lille, France
| | - Philippe Jacques
- MiPI, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, Avenue de la Faculté, 2B, B-5030 Gembloux, Belgium
| | - François Coutte
- Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 ICV - Institut Charles Viollette, F-59000 Lille, France.
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Desmyttere H, Deweer C, Muchembled J, Sahmer K, Jacquin J, Coutte F, Jacques P. Antifungal Activities of Bacillus subtilis Lipopeptides to Two Venturia inaequalis Strains Possessing Different Tebuconazole Sensitivity. Front Microbiol 2019; 10:2327. [PMID: 31695685 PMCID: PMC6817503 DOI: 10.3389/fmicb.2019.02327] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 09/24/2019] [Indexed: 01/27/2023] Open
Abstract
Within the framework of biocontrol development, three natural substances produced by Bacillus subtilis, called lipopeptides, have been studied: fengycin (F), surfactin (S), and mycosubtilin (M). Their antifungal properties were tested in vitro, in liquid medium, on two strains of Venturia inaequalis, ascomycete fungi causing apple scab. These two strains were, respectively sensitive and less sensitive to tebuconazole, an active substance of the triazole family. These three molecules were tested on their own, in binary (FS, FM, SM) and ternary mixtures (FSM). The antifungal activities of lipopeptides were estimated by calculating an IC50, compared to tebuconazole chemical substance. In tests involving the sensitive strain, all lipopeptide modalities exhibited antifungal activity. However, modalities involving fengycin and its mixtures exhibited the best antifungal activities; the activity of fengycin alone being very similar to that of tebuconazole. Interestingly, regarding the strain with reduced sensitivity to tebuconazole, surfactin and fengycin alone were not efficient while mycosubtilin and the different mixtures showed interesting antifungal activities. Specifically, the antifungal activity of FS and FSM mixture were equivalent to that of tebuconazole. For both fungal strains, microscopic observations revealed important morphological modifications in the presence of fengycin and in a less important proportion in the presence of surfactin but not in the presence of mycosubtilin. Overall, this study highlights the diversity in mode of action of lipopeptides on apple scab strains.
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Affiliation(s)
- Hélène Desmyttere
- Univ. Lille, INRA, ISA-Yncréa, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - Caroline Deweer
- Univ. Lille, INRA, ISA-Yncréa, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - Jérôme Muchembled
- Univ. Lille, INRA, ISA-Yncréa, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - Karin Sahmer
- Civil and Geo-Environmental Engineering Laboratory (LGCgE), ISA - Yncréa, Lille, France
| | - Justine Jacquin
- Univ. Lille, INRA, ISA-Yncréa, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - François Coutte
- Univ. Lille, INRA, ISA-Yncréa, Univ. Artois, Univ. Littoral Côte d'Opale, EA 7394 - ICV - Institut Charles Viollette, Lille, France
| | - Philippe Jacques
- MiPI, TERRA Teaching and Research Centre, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
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Bouatenin KMJP, Theodore DN, Alfred KK, Hermann CW, Marcellin DK. Excretion of β-glucosidase and pectinase by microorganisms isolated from cassava traditional ferments used for attieke production in Côte d'Ivoire. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2019.101217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Surfactin application for a short period (10/20 s) increases the surface wettability of sound dentin. Amino Acids 2019; 51:1233-1240. [DOI: 10.1007/s00726-019-02750-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 06/06/2019] [Indexed: 02/07/2023]
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Wang C, Cao Y, Wang Y, Sun L, Song H. Enhancing surfactin production by using systematic CRISPRi repression to screen amino acid biosynthesis genes in Bacillus subtilis. Microb Cell Fact 2019; 18:90. [PMID: 31122258 PMCID: PMC6533722 DOI: 10.1186/s12934-019-1139-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 05/17/2019] [Indexed: 11/12/2022] Open
Abstract
Background Surfactin is a cyclic lipopeptide that is of great industrial use owing to its extraordinary surfactant power and antimicrobial, antiviral, and antitumor activities. Surfactin is synthesized by a condensation reaction in microbes, which uses fatty acids and four kinds of amino acids (l-glutamate, l-aspartate, l-leucine and l-valine) as precursors. Surfactin biosynthesis could be improved by increasing the supply of fatty acids; however, the effect of the regulation of amino acid metabolism on surfactin production was not yet clear. Results In this study, we aimed to improve surfactin production in B. subtilis by repressing the genes on the branch metabolic pathways of amino acid biosynthesis using CRISPRi technology. First, 20 genes were inhibited individually, resulting in 2.5- to 627-fold decreases in transcriptional level as determined by RT-qPCR. Among the 20 recombinant strains, 16 strains obtained higher surfactin titres than that produced by the parent BS168NU-Sd strain (the surfactin production of BS168NU-Sd with only dCas9 but no sgRNA expression was 0.17 g/L). In particular, the strains in which the yrpC, racE or murC genes were inhibited individually produced 0.54, 0.41, or 0.42 g/L surfactin, respectively. All three genes are related to the metabolism of l-glutamate, whose acylation is the first step in the surfactin condensation reaction. Furthermore, these three genes were repressed in combination, and the strain with co-inhibition of yrpC and racE produced 0.75 g/L surfactin, which was 4.69-fold higher than that of the parent strain. In addition, the inhibition of bkdAA and bkdAB, which are related to the metabolism of l-leucine and l-valine, not only improved surfactin production but also increased the proportion of the C14 isoform. Conclusions This study, to the best of our knowledge for the first time, systematically probed the regulatory effect of increasing the supply of amino acids on surfactin production. It provided an effective strategy and a new perspective for systematic studies on surfactin and other amino acid-derived chemicals. Electronic supplementary material The online version of this article (10.1186/s12934-019-1139-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Congya Wang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, People's Republic of China
| | - Yingxiu Cao
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, People's Republic of China
| | - Yongping Wang
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, People's Republic of China
| | - Liming Sun
- Petrochemical Research Institute, PetroChina Company Limited, Beijing, 102206, China
| | - Hao Song
- Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, People's Republic of China.
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Antitumoral and Antimicrobial Activity of Surfactin Extracted from Bacillus subtilis KLP2015. Int J Pept Res Ther 2019. [DOI: 10.1007/s10989-019-09848-w] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Caulier S, Nannan C, Gillis A, Licciardi F, Bragard C, Mahillon J. Overview of the Antimicrobial Compounds Produced by Members of the Bacillus subtilis Group. Front Microbiol 2019; 10:302. [PMID: 30873135 PMCID: PMC6401651 DOI: 10.3389/fmicb.2019.00302] [Citation(s) in RCA: 302] [Impact Index Per Article: 60.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 02/05/2019] [Indexed: 12/19/2022] Open
Abstract
Over the last seven decades, applications using members of the Bacillus subtilis group have emerged in both food processes and crop protection industries. Their ability to form survival endospores and the plethora of antimicrobial compounds they produce has generated an increased industrial interest as food preservatives, therapeutic agents and biopesticides. In the growing context of food biopreservation and biological crop protection, this review suggests a comprehensive way to visualize the antimicrobial spectrum described within the B. subtilis group, including volatile compounds. This classification distinguishes the bioactive metabolites based on their biosynthetic pathways and chemical nature: i.e., ribosomal peptides (RPs), volatile compounds, polyketides (PKs), non-ribosomal peptides (NRPs), and hybrids between PKs and NRPs. For each clade, the chemical structure, biosynthesis and antimicrobial activity are described and exemplified. This review aims at constituting a convenient and updated classification of antimicrobial metabolites from the B. subtilis group, whose complex phylogeny is prone to further development.
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Affiliation(s)
- Simon Caulier
- Laboratory of Food and Environmental Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium.,Laboratory of Phytopathology-Applied Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Catherine Nannan
- Laboratory of Food and Environmental Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Annika Gillis
- Laboratory of Food and Environmental Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Florent Licciardi
- Laboratory of Food and Environmental Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Claude Bragard
- Laboratory of Phytopathology-Applied Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Jacques Mahillon
- Laboratory of Food and Environmental Microbiology, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium
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Zdarta A, Smułek W, Trzcińska A, Cybulski Z, Kaczorek E. Properties and potential application of efficient biosurfactant produced by Pseudomonas sp. KZ1 strain. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2019; 54:110-117. [PMID: 30614383 DOI: 10.1080/10934529.2018.1530537] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Revised: 08/29/2018] [Accepted: 09/15/2018] [Indexed: 06/09/2023]
Abstract
Increasing use of biosurfactants has stimulated the search for new and efficient biosurfactant-producing bacterial strains, preferably nonpathogenic ones. The aim of the present study was to characterize a new isolated Pseudomonas sp. KZ1 strain and its exocellular surface active compounds. After examining several mineral media of different compositions, the bioreactor-scale production of biosurfactants under optimum conditions was tested. Then, the composition of the isolated biosurfactants was investigated by Fourier-transform infrared spectroscopy and gas chromatography-mass spectrometry analysis and their surface active properties were characterized by adsorption parameters. The results indicated that the Pseudomonas sp. KZ1 biosurfactant had the critical micelle concentration of 0.12 g L-1 and decreased the surface tension decreased to 31.7 mN m-1. Moreover, the biosurfactant increased the rate of biodegradation of diesel oil by the strains: Pseudomonas sp. KZ1, Pseudomonas sp. OS4 and Achromobacter sp. KW1. The obtained biosurfactant showing attractive properties is a promising and much 'greener' alternative in the application for surfactant-enhanced biodegradation of hydrocarbons.
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Affiliation(s)
- Agata Zdarta
- a Institute of Chemical Technology and Engineering , Poznan University of Technology , Poznan , Poland
| | - Wojciech Smułek
- a Institute of Chemical Technology and Engineering , Poznan University of Technology , Poznan , Poland
| | - Anna Trzcińska
- a Institute of Chemical Technology and Engineering , Poznan University of Technology , Poznan , Poland
| | - Zefiryn Cybulski
- b Department of Microbiology , Greater Poland Cancer Centre , Poznan , Poland
| | - Ewa Kaczorek
- a Institute of Chemical Technology and Engineering , Poznan University of Technology , Poznan , Poland
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Heuson E, Etchegaray A, Filipe SL, Beretta D, Chevalier M, Phalip V, Coutte F. Screening of Lipopeptide-Producing Strains of Bacillus sp. Using a New Automated and Sensitive Fluorescence Detection Method. Biotechnol J 2018; 14:e1800314. [PMID: 30430761 DOI: 10.1002/biot.201800314] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 10/27/2018] [Indexed: 01/29/2023]
Abstract
Lipopeptides, such as surfactins are important biosurfactants produced by Bacillus sp. that find applications in many areas (environment, medicine, and food industries). Giving their importance, the use of simple detection methods will facilitate screening and quantification. In the present work, the authors describe a completely automated workflow for the screening of lipopeptide-producing strains, including quantification. First, isolated colonies from environmental samples are automatically picked and inoculated in 96 wells growth plate. After overnight incubation, surfactin produced in the broth is quantified, using a new sensitive fluorescent method. The method uses fluorescein (FL), which is an anionic dye at neutral to alkaline pH and forms a stable complex with the cationic surfactant cetylpiridinium chloride (CPC), quenching fluorescence. Upon addition of surfactin or other lipopeptides, fluorescein is released from the CPC-FL complex and quantified. The robustness of this method is assessed by comparing the quantification results to those conventionally measured by RP-UPLC and the results of strain screening are confirmed by MALDI-ToF analysis. The authors report for the first time the successful application of this analytical method for high-throughput screening of novel lipopeptide-producing strains.
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Affiliation(s)
- Egon Heuson
- University Lille, INRA, ISA, University Artois, Univ. Littoral Côte d'Opale, EA 7394-ICV Institut Charles Viollette, F-59000, Lille, France
| | - Augusto Etchegaray
- Faculty of Chemistry, Pontifical Catholic University of Campinas, Rod. D. Pedro I, km 136, Campinas, SP, 13086-900, Brazil
| | - Stephanie L Filipe
- University Lille, INRA, ISA, University Artois, Univ. Littoral Côte d'Opale, EA 7394-ICV Institut Charles Viollette, F-59000, Lille, France
| | - Daniel Beretta
- Faculty of Chemistry, Pontifical Catholic University of Campinas, Rod. D. Pedro I, km 136, Campinas, SP, 13086-900, Brazil
| | - Mickaël Chevalier
- University Lille, INRA, ISA, University Artois, Univ. Littoral Côte d'Opale, EA 7394-ICV Institut Charles Viollette, F-59000, Lille, France
| | - Vincent Phalip
- University Lille, INRA, ISA, University Artois, Univ. Littoral Côte d'Opale, EA 7394-ICV Institut Charles Viollette, F-59000, Lille, France
| | - François Coutte
- University Lille, INRA, ISA, University Artois, Univ. Littoral Côte d'Opale, EA 7394-ICV Institut Charles Viollette, F-59000, Lille, France
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Nasfi Z, Busch H, Kehraus S, Linares-Otoya L, König GM, Schäberle TF, Bachoual R. Soil Bacteria Isolated From Tunisian Arid Areas Show Promising Antimicrobial Activities Against Gram-Negatives. Front Microbiol 2018; 9:2742. [PMID: 30483240 PMCID: PMC6242944 DOI: 10.3389/fmicb.2018.02742] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 10/26/2018] [Indexed: 12/20/2022] Open
Abstract
Arid regions show relatively fewer species in comparison to better-watered biomes, but the competition for the few nutrients is very distinct. Here, in total 373 bacterial strains were isolated from rhizospheric soils obtained from three different sampling sites in Tunisia. Their potential for the production of antimicrobial compounds was evaluated. Bacterial strains, showing antibacterial activity against pathogenic bacteria, were isolated from all three sites, one strain from the Bou-Hedma national park, 15 strains from Chott-Djerid, and 13 strains from Matmata, respectively. The dominant genus was Bacillus, with 27 out of 29 strains. Most interestingly, 93% of the isolates showed activity against Gram-positive and Gram-negative test bacteria. Strain Bacillus sp. M21, harboring high inhibitory potential, even against clinical isolates of Gram-negative bacteria, was analyzed in detail to enable purification and identification of the bioactive compound responsible for its bioactivity. Subsequent HPLC-MS and NMR analyses resulted in the identification of 1-acetyl-β-carboline as active component. Furthermore, fungicides of the bacillomycin and fengycin group, which in addition show antibiotic effects, were identified. This work highlights the high potential of the arid-adapted strains for the biosynthesis of specialized metabolites and suggest further investigation of extreme environments, since they constitute a promising bioresource of biologically active compounds.
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Affiliation(s)
- Zina Nasfi
- Laboratory of Plant Improvement and Valorization of Agroresources, National School of Engineering of Sfax, Sfax, Tunisia
- Institute for Insect Biotechnology, Justus-Liebig-University Giessen, Giessen, Germany
- Faculty of Sciences of Gabès, University of Gabès, Gabès, Tunisia
| | - Henrik Busch
- Institute for Pharmaceutical Biology, University of Bonn, Bonn, Germany
| | - Stefan Kehraus
- Institute for Pharmaceutical Biology, University of Bonn, Bonn, Germany
| | - Luis Linares-Otoya
- Institute for Insect Biotechnology, Justus-Liebig-University Giessen, Giessen, Germany
| | - Gabriele M. König
- Institute for Pharmaceutical Biology, University of Bonn, Bonn, Germany
| | - Till F. Schäberle
- Institute for Insect Biotechnology, Justus-Liebig-University Giessen, Giessen, Germany
- Department of Bioresources of the Fraunhofer Institute for Molecular Biology and Applied Ecology, Giessen, Germany
| | - Rafik Bachoual
- Laboratory of Plant Improvement and Valorization of Agroresources, National School of Engineering of Sfax, Sfax, Tunisia
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Harwood CR, Mouillon JM, Pohl S, Arnau J. Secondary metabolite production and the safety of industrially important members of the Bacillus subtilis group. FEMS Microbiol Rev 2018; 42:721-738. [PMID: 30053041 PMCID: PMC6199538 DOI: 10.1093/femsre/fuy028] [Citation(s) in RCA: 109] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2018] [Accepted: 07/17/2018] [Indexed: 11/14/2022] Open
Abstract
Members of the 'Bacillus subtilis group' include some of the most commercially important bacteria, used for the production of a wide range of industrial enzymes and fine biochemicals. Increasingly, group members have been developed for use as animal feed enhancers and antifungal biocontrol agents. The group has long been recognised to produce a range of secondary metabolites and, despite their long history of safe usage, this has resulted in an increased focus on their safety. Traditional methods used to detect the production of secondary metabolites and other potentially harmful compounds have relied on phenotypic tests. Such approaches are time consuming and, in some cases, lack specificity. Nowadays, accessibility to genome data and associated bioinformatical tools provides a powerful means for identifying gene clusters associated with the synthesis of secondary metabolites. This review focuses primarily on well-characterised strains of B. subtilis and B. licheniformis and their synthesis of non-ribosomally synthesised peptides and polyketides. Where known, the activities and toxicities of their secondary metabolites are discussed, together with the limitations of assays currently used to assess their toxicity. Finally, the regulatory framework under which such strains are authorised for use in the production of food and feed enzymes is also reviewed.
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Affiliation(s)
- Colin R Harwood
- Centre for Bacterial Cell Biology, Institute for Cell and Molecular Biology, Newcastle University, Newcastle upon Tyne NE2 4AX, UK
| | - Jean-Marie Mouillon
- Department of Fungal Strain Technology and Strain Approval Support, Novozymes A/S, Krogshoevej 36, DK-2880 Bagsvaerd, Denmark
| | - Susanne Pohl
- Centre for Bacterial Cell Biology, Institute for Cell and Molecular Biology, Newcastle University, Newcastle upon Tyne NE2 4AX, UK
| | - José Arnau
- Department of Fungal Strain Technology and Strain Approval Support, Novozymes A/S, Krogshoevej 36, DK-2880 Bagsvaerd, Denmark
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Gao L, Guo J, Fan Y, Ma Z, Lu Z, Zhang C, Zhao H, Bie X. Module and individual domain deletions of NRPS to produce plipastatin derivatives in Bacillus subtilis. Microb Cell Fact 2018; 17:84. [PMID: 29855381 PMCID: PMC5984369 DOI: 10.1186/s12934-018-0929-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Accepted: 05/11/2018] [Indexed: 12/04/2022] Open
Abstract
Background Plipastatin, an antifungal lipopeptide, is synthesized by a non-ribosomal peptide synthetase (NRPS) in Bacillus subtilis. However, little information is available on the combinatorial biosynthesis strategies applied in plipastatin biosynthetic pathway. In this study, we applied module or individual domain deletion strategies to engineer the plipastatin biosynthetic pathway, and investigated the effect of deletions on the plipastatin assembly line, as well as revealed the synthetic patterns of novel lipopeptides. Results Module deletion inactivated the entire enzyme complex, whereas individual domain (A/T domain) deletion within module 7 truncated the assembly line, resulting in truncated linear hexapeptides (C16~17β-OHFA-Glu-Orn-Tyr-Thr-Glu-Ala/Val). Interestingly, within the module 6 catalytic unit, the effect of thiolation domain deletion differed from that of adenylation deletion. Absence of the T6-domain resulted in a nonproductive strain, whereas deletion of the A6-domain resulted in multiple assembly lines via module-skipping mechanism, generating three novel types of plipastatin derivatives, pentapeptides (C16~17β-OHFA-Glu-Orn-Tyr-Thr-Glu), hexapeptides (C16~17β-OHFA-Glu-Orn-Tyr-Thr-Glu-Ile), and octapeptides (C16~17β-OHFA-Glu-Orn-Tyr-Thr-Glu-Gln-Tyr-Ile). Conclusions Notably, a unique module-skipping process occurred following deletion of the A6-domain, which has not been previously reported for engineered NRPS systems. This finding provides new insight into the lipopeptides engineering. It is of significant importance for combinatorial approaches and should be taken into consideration in engineering non-ribosomal peptide biosynthetic pathways for generating novel lipopeptides. Electronic supplementary material The online version of this article (10.1186/s12934-018-0929-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Ling Gao
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Jianping Guo
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Yun Fan
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Zhi Ma
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Zhaoxin Lu
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Chong Zhang
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Haizhen Zhao
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Xiaomei Bie
- College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China.
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Moro GV, Almeida RTR, Napp AP, Porto C, Pilau EJ, Lüdtke DS, Moro AV, Vainstein MH. Identification and ultra-high-performance liquid chromatography coupled with high-resolution mass spectrometry characterization of biosurfactants, including a new surfactin, isolated from oil-contaminated environments. Microb Biotechnol 2018; 11:759-769. [PMID: 29761667 PMCID: PMC6011949 DOI: 10.1111/1751-7915.13276] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Revised: 04/11/2018] [Accepted: 04/12/2018] [Indexed: 01/06/2023] Open
Abstract
Biosurfactant-producing bacteria were isolated from samples collected in areas contaminated with crude oil. The isolates were screened for biosurfactant production using qualitative drop-collapse test, oil-spreading and emulsification assays, and measurement of their tensoactive properties. Five isolates tested positive for in the screening experiments and displayed decrease in the surface tension below 30 mN m-1 . The biosurfactants produced by these isolates were further investigated and their molecular identification revealed that they are bacteria related to the Bacillus genus. Additionally, the biosurfactants produced were chemically characterized via UHPLC-HRMS experiments, indicating the production of surfactin homologues, including a new class of these molecules.
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Affiliation(s)
- Glaci V Moro
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil
| | - Rafaela T R Almeida
- Departamento de Química, Universidade Estadual de Maringá (UEM), 87020-900, Maringá, PR, Brazil
| | - Amanda P Napp
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil
| | - Carla Porto
- Departamento de Química, Universidade Estadual de Maringá (UEM), 87020-900, Maringá, PR, Brazil
| | - Eduardo J Pilau
- Departamento de Química, Universidade Estadual de Maringá (UEM), 87020-900, Maringá, PR, Brazil
| | - Diogo S Lüdtke
- Institute of Chemistry, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil
| | - Angélica V Moro
- Institute of Chemistry, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil
| | - Marilene H Vainstein
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9500, 91501-970, Porto Alegre, RS, Brazil
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Kowalczyk R, Harris PWR, Williams GM, Yang SH, Brimble MA. Peptide Lipidation - A Synthetic Strategy to Afford Peptide Based Therapeutics. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2018; 1030:185-227. [PMID: 29081055 PMCID: PMC7121180 DOI: 10.1007/978-3-319-66095-0_9] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Peptide and protein aberrant lipidation patterns are often involved in many diseases including cancer and neurological disorders. Peptide lipidation is also a promising strategy to improve pharmacokinetic and pharmacodynamic profiles of peptide-based drugs. Self-adjuvanting peptide-based vaccines commonly utilise the powerful TLR2 agonist PamnCys lipid to stimulate adjuvant activity. The chemical synthesis of lipidated peptides can be challenging hence efficient, flexible and straightforward synthetic routes to access homogeneous lipid-tagged peptides are in high demand. A new technique coined Cysteine Lipidation on a Peptide or Amino acid (CLipPA) uses a 'thiol-ene' reaction between a cysteine and a vinyl ester and offers great promise due to its simplicity, functional group compatibility and selectivity. Herein a brief review of various synthetic strategies to access lipidated peptides, focusing on synthetic methods to incorporate a PamnCys motif into peptides, is provided.
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Affiliation(s)
- Renata Kowalczyk
- School of Chemical Sciences, The University of Auckland, 23 Symonds St, Auckland, New Zealand
| | - Paul W R Harris
- School of Chemical Sciences, The University of Auckland, 23 Symonds St, Auckland, New Zealand.,School of Biological Sciences, The University of Auckland, 3A Symonds St, Auckland, New Zealand.,Maurice Wilkins Centre for Molecular Biodiscovery, University of Auckland, Private Bag 92019, Auckland, 1010, New Zealand
| | - Geoffrey M Williams
- School of Chemical Sciences, The University of Auckland, 23 Symonds St, Auckland, New Zealand.,School of Biological Sciences, The University of Auckland, 3A Symonds St, Auckland, New Zealand.,Maurice Wilkins Centre for Molecular Biodiscovery, University of Auckland, Private Bag 92019, Auckland, 1010, New Zealand
| | - Sung-Hyun Yang
- School of Chemical Sciences, The University of Auckland, 23 Symonds St, Auckland, New Zealand.,School of Biological Sciences, The University of Auckland, 3A Symonds St, Auckland, New Zealand
| | - Margaret A Brimble
- School of Chemical Sciences, The University of Auckland, 23 Symonds St, Auckland, New Zealand. .,School of Biological Sciences, The University of Auckland, 3A Symonds St, Auckland, New Zealand. .,Maurice Wilkins Centre for Molecular Biodiscovery, University of Auckland, Private Bag 92019, Auckland, 1010, New Zealand.
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Akbari S, Abdurahman NH, Yunus RM, Fayaz F, Alara OR. Biosurfactants—a new frontier for social and environmental safety: a mini review. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.biori.2018.09.001] [Citation(s) in RCA: 126] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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43
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Affiliation(s)
- I. W. Hamley
- Department of Chemistry, University of Reading, Whiteknights, Reading RG6 6AD, United Kingdom
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44
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Jemil N, Manresa A, Rabanal F, Ben Ayed H, Hmidet N, Nasri M. Structural characterization and identification of cyclic lipopeptides produced by Bacillus methylotrophicus DCS1 strain. J Chromatogr B Analyt Technol Biomed Life Sci 2017; 1060:374-386. [DOI: 10.1016/j.jchromb.2017.06.013] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2017] [Revised: 06/03/2017] [Accepted: 06/06/2017] [Indexed: 11/27/2022]
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45
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Chen Y, Liu SA, Mou H, Ma Y, Li M, Hu X. Characterization of Lipopeptide Biosurfactants Produced by Bacillus licheniformis MB01 from Marine Sediments. Front Microbiol 2017; 8:871. [PMID: 28559889 PMCID: PMC5432566 DOI: 10.3389/fmicb.2017.00871] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 04/28/2017] [Indexed: 01/06/2023] Open
Abstract
Antibiotic resistance has become one of the world’s most severe problems because of the overuse of antibiotics. Antibiotic-resistant bacteria are more difficult to kill and more expensive to treat. Researchers have been studied on antibiotic alternatives such as antimicrobial peptides and lipopeptides. A functional bacteria MB01 producing lipopeptides which can be used as bacteriostat was isolated from the Bohai Sea sediments, which had been identified as Bacillus licheniformis by the morphological, physiological, and biochemical identification and 16s rDNA sequence. The lipopeptides produced by MB01 were determined to be cyclic surfactin homologs by LC-ESI-MS structural identification after crude extraction and LH-20 chromatography. [M+H]+m/z 994, 1008, 1022, and 1036 were all the characteristic molecular weight of surfactin homologs. CID analysis revealed that the molecular structure of the lipopeptides was Rn-Glu1-Leu/Ile2-Leu3-Val4-Asp5-Leu6-Leu/Ile7. The lipopeptides showed well resistance to UV light and the change of pH and temperature.
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Affiliation(s)
- Yulin Chen
- Yantai Institute of Coastal Zone Research, Chinese Academy of SciencesYantai, China.,School of Food Science and Engineering, Ocean University of ChinaQingdao, China
| | - Shiliang A Liu
- School of Veterinary Medicine, Louisiana State University, Baton RougeLA, USA
| | - Haijin Mou
- School of Food Science and Engineering, Ocean University of ChinaQingdao, China
| | - Yunxiao Ma
- School of Food Science and Engineering, Ocean University of ChinaQingdao, China
| | - Meng Li
- Yantai Institute of Coastal Zone Research, Chinese Academy of SciencesYantai, China
| | - Xiaoke Hu
- Yantai Institute of Coastal Zone Research, Chinese Academy of SciencesYantai, China
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46
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Dhali D, Coutte F, Arias AA, Auger S, Bidnenko V, Chataigné G, Lalk M, Niehren J, de Sousa J, Versari C, Jacques P. Genetic engineering of the branched fatty acid metabolic pathway ofBacillus subtilisfor the overproduction of surfactin C14isoform. Biotechnol J 2017; 12. [DOI: 10.1002/biot.201600574] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Revised: 03/13/2017] [Accepted: 03/31/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Debarun Dhali
- University Lille, INRA, ISA, University Artois, University Littoral Côte d'Opale; EA 7394 - ICV - Institut Charles Viollette; Lille France
| | - François Coutte
- University Lille, INRA, ISA, University Artois, University Littoral Côte d'Opale; EA 7394 - ICV - Institut Charles Viollette; Lille France
| | - Anthony Argüelles Arias
- MiPI, TERRA Research Centre, Gembloux Agro-Bio Tech; University of Liege; Passage des Déportés; Gembloux Belgium
| | - Sandrine Auger
- Micalis Institute, INRA, AgroParisTech; University Paris-Saclay; Jouy-en-Josas France
| | - Vladimir Bidnenko
- Micalis Institute, INRA, AgroParisTech; University Paris-Saclay; Jouy-en-Josas France
| | - Gabrielle Chataigné
- University Lille, INRA, ISA, University Artois, University Littoral Côte d'Opale; EA 7394 - ICV - Institut Charles Viollette; Lille France
| | - Michael Lalk
- Ernst-Moritz-Arndt-University Greifswald; Institute of Biochemistry; Greifswald Germany
| | - Joachim Niehren
- University Lille; BioComputing Team, CRIStAL Lab (CNRS UMR9189); Villeneuve d'Ascq France
- Inria Lille; Villeneuve d'Ascq France
| | - Joana de Sousa
- Ernst-Moritz-Arndt-University Greifswald; Institute of Biochemistry; Greifswald Germany
| | - Cristian Versari
- University Lille; BioComputing Team, CRIStAL Lab (CNRS UMR9189); Villeneuve d'Ascq France
| | - Philippe Jacques
- University Lille, INRA, ISA, University Artois, University Littoral Côte d'Opale; EA 7394 - ICV - Institut Charles Viollette; Lille France
- MiPI, TERRA Research Centre, Gembloux Agro-Bio Tech; University of Liege; Passage des Déportés; Gembloux Belgium
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Gao L, Han J, Liu H, Qu X, Lu Z, Bie X. Plipastatin and surfactin coproduction by Bacillus subtilis pB2-L and their effects on microorganisms. Antonie van Leeuwenhoek 2017; 110:1007-1018. [PMID: 28477175 DOI: 10.1007/s10482-017-0874-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 04/17/2017] [Indexed: 10/19/2022]
Abstract
To convert the lipopeptide non-producer strain Bacillus subtilis pB2 into a plipastatin and surfactin coproducer, a gene expression cassette composed of a constitutive promoter (P43), functional gene sfp, and pleiotropic regulatory gene degQ was integrated into the chromosomal amyE locus of strain B. subtilis pB2 by homologous recombination, which generated a plipastatin and surfactin co-producer. Thirteen plipastatins and fifteen surfactins were identified in lipopeptide extracts using analytical techniques, and their effects on microorganisms were described by microscopic, cytoskeleton analysis and flow-cytometry, respectively. Plipastatins isolated from the engineered strain pB2-L exhibited strong antifungal activity (MIC 16 μg ml-1) by disrupting the cell walls, membranes and cytoskeleton of Fusarium oxysporum f. sp. cucumerinum hyphae. Surfactins affected the cell membrane of Staphylococcus aureus (MIC 20 μg ml-1), resulting in nucleic acid leakage and ultimately, cell death. Based on the convenience of genetic manipulation in the engineering strain, this work could be useful for the rational design of lipopeptide synthetases via the recombination of gene fragments to generate arrays of peptide derivatives and thus expand the diversity of microbial-produced lipopeptides.
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Affiliation(s)
- Ling Gao
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Jinzhi Han
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Hongxia Liu
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Xiaoxu Qu
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Zhaoxin Lu
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China
| | - Xiaomei Bie
- Key Laboratory of Food Processing and Quality Control, Ministry of Agriculture of China, College of Food Science and Technology, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, People's Republic of China.
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48
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Translocation of the thioesterase domain for the redesign of plipastatin synthetase. Sci Rep 2016; 6:38467. [PMID: 28009004 PMCID: PMC5180189 DOI: 10.1038/srep38467] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2016] [Accepted: 11/09/2016] [Indexed: 11/23/2022] Open
Abstract
Non-ribosomal peptide synthetases (NRPSs) are large enzymatic complexes that catalyse the synthesis of biologically active peptides in microorganisms. Genetic engineering has recently been applied to reprogram NRPSs to produce lipopeptides with a new sequence. The carboxyl-terminal thioesterase (TE) domains from NRPSs catalyse cleavage products by hydrolysis or complex macrocyclization. In this study, we modified plipastatin synthetase by moving the intrinsic TE region to the end of the internal thiolation (T) domains, thus generating Bacillus subtilis strains that could produce new truncated cyclic or linear peptides of the predicted sequence, which further provided an important insight into the regioselectivity of plipastatin TE. The TE was capable of recognizing and catalysing the lactone formation between L-Try3 with the last few residues L-Pro7 and L-Gln8 at the C-terminus. Additionally, the unmatched linkers connecting the TE region and T domain resulted in nonproduction strains, suggesting that the native T–TE linker is necessary and sufficient for the TE domain to release the products from the hybrid enzymes. This is the first report to demonstrate truncated cyclic lipopeptides production and module skipping by simply moving the TE domain forward in an NRPS system.
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49
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Ma Y, Kong Q, Qin C, Chen Y, Chen Y, Lv R, Zhou G. Identification of lipopeptides in Bacillus megaterium by two-step ultrafiltration and LC-ESI-MS/MS. AMB Express 2016; 6:79. [PMID: 27639854 PMCID: PMC5026979 DOI: 10.1186/s13568-016-0252-6] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Accepted: 09/08/2016] [Indexed: 11/10/2022] Open
Abstract
A two-step ultrafiltration and liquid chromatography-electronic spray ionization-tandem mass spectrometry (LC-ESI-MS/MS) were applied to investigate the nature of lipopeptides in the methanol extract harvested from marine Bacillus megaterium. The structure of lipopeptide homologs were characterized by using collision-induced dissociation mass spectrometry analysis. Collectively, two kinds of linear fengycin A and B with a double bond were characterized for the first time besides the popular cyclic fengycin A and B with the difference in the amino acid at position 6 of the peptide moiety. It is worth noting that two kinds of linear isoforms of surfactins and two kinds of cyclic isoforms of esperin with a smaller peptide ring formed by the fifth L-Asp and β-hydroxy fatty acid were also separated and identified in addition to the all seven kinds of cyclic isoforms of surfactins. Only one analogue (bacillomycin D) of iturin family was identified in this research. To our best knowledge, this is the first report that more than 40 variants of lipopeptides from one strain of Bacillus were identified using our potent purification and identification methods.
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50
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Lu H, Qian S, Muhammad U, Jiang X, Han J, Lu Z. Effect of fructose on promoting fengycin biosynthesis inBacillus amyloliquefaciensfmb-60. J Appl Microbiol 2016; 121:1653-1664. [DOI: 10.1111/jam.13291] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 08/05/2016] [Accepted: 08/30/2016] [Indexed: 11/28/2022]
Affiliation(s)
- H. Lu
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing Jiangsu China
| | - S. Qian
- Department of Bioengineering and Food; Bengbu College; Bengbu Anhui China
| | - U. Muhammad
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing Jiangsu China
| | - X. Jiang
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing Jiangsu China
| | - J. Han
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing Jiangsu China
| | - Z. Lu
- College of Food Science and Technology; Nanjing Agricultural University; Nanjing Jiangsu China
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