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Picone M, Russo M, Marchetto D, Distefano GG, Baccichet M, Scalabrin E, Galvan T, Humar M, Lesar B, Guarneri I, Tagliapietra D, Capodaglio G, Volpi Ghirardini A. An Integrated Testing Strategy (ITS) to assess the environmental compatibility of wood protection techniques. JOURNAL OF HAZARDOUS MATERIALS 2024; 472:134484. [PMID: 38723484 DOI: 10.1016/j.jhazmat.2024.134484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 04/16/2024] [Accepted: 04/28/2024] [Indexed: 05/30/2024]
Abstract
To quantify the possible impact of different wood protection techniques on the aquatic environment, we applied a tiered Integrated Testing Strategy (ITS) on leachates obtained from untreated (UTW) Norway spruce (Picea abies), specimens treated with a copper-ethanolamine-based preservative solution, complying with the Use Class 3 (UC3), and specimens thermally modified (TM). Different maturation times in water were tested to verify whether toxicant leaching is time-dependent. Tier I tests, addressing acute effects on Aliivibrio fischeri, Raphidocelis subcapitata, and Daphnia magna, evidenced that TM toxicity was comparable or even lower than in UTW. Conversely, UC3 significantly affected all species compared to UTW, also after 30 days of maturation in water, and was not considered an environmentally acceptable wood preservation solution. Tier II (effects on early-life stages of Lymnea auricularia) and III (chronic effects on D. magna and L. auricularia) performed on UTW and TM confirmed the latter as an environmentally acceptable treatment, with increasing maturation times resulting in decreased adverse effects. The ITS allowed for rapid and reliable identification of potentially harmful effects due to preservation treatments, addressed the choice for a less impacting solution, and can be effective for manufacturers in identifying more environmentally friendly solutions while developing their products.
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Affiliation(s)
- Marco Picone
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy.
| | - Martina Russo
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Davide Marchetto
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Gabriele Giuseppe Distefano
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Marco Baccichet
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Elisa Scalabrin
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy; National Council for the Research - Institute of Polar Sciences, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Thomas Galvan
- Agri.Te.Co. Società Cooperativa, via via Angelo Toffoli 13, 30175 Venezia-Marghera, Italy
| | - Miha Humar
- University of Ljubljana, Biotechnical Faculty, Jamnikarjeva 101, 1000 Ljubljana, Slovenia
| | - Bostjan Lesar
- University of Ljubljana, Biotechnical Faculty, Jamnikarjeva 101, 1000 Ljubljana, Slovenia
| | - Irene Guarneri
- National Council for the Research - Institute of Marine Sciences, Tesa 104, Arsenale, Castello 2737/F, 30122 Venezia, Italy
| | - Davide Tagliapietra
- National Council for the Research - Institute of Marine Sciences, Tesa 104, Arsenale, Castello 2737/F, 30122 Venezia, Italy
| | - Gabriele Capodaglio
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
| | - Annamaria Volpi Ghirardini
- Department of Environmental Sciences, Informatics, and Statistics, Ca' Foscari University Venice, via Torino 155, 30172 Venezia-Mestre, Italy
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Scalabrin E, Radaelli M, Capodaglio G, Pierobon M, Del Vecchio S, Buffa G. Hemp cultivation opportunities for marginal lands development. PLoS One 2024; 19:e0299981. [PMID: 38512945 PMCID: PMC10956763 DOI: 10.1371/journal.pone.0299981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 02/20/2024] [Indexed: 03/23/2024] Open
Abstract
Agricultural diversification and high-quality products deriving from sustainable crops such as hemp can represent a solution to revitalize marginal areas and reverse land abandonment. This study aimed at comparing four different hemp cultivars (Carmagnola Selezionata, "CS"; Futura 75, "FUT"; Felina 32, "FEL"; Secuieni Jubileu, "JUB") to provide information to select the best suited cultivar for cultivation in mountain marginal areas and for specific end-use applications. Hemp cultivars were cultivated in a single experimental field to compare their ecological and agronomic behavior (duration of life cycle phases, plant size and biomass allocation, and plant resource-use strategies). Through metabolomic analysis of both vegetative and reproductive parts of the plants we tested the presence of substances of nutraceutical interest and traced seed nutritional profile. The four cultivars had different ecological and agronomic behavior, and nutritional profile. We found several compounds with potential pharmaceutical and nutraceutical values in all parts of the plant (leaves, inflorescences, and stems). JUB resulted the most suitable for seed production while CS showed the highest content of bioactive compounds in flowers and leaves. FUT, showed the best suitability for multi-purpose cultivation, while FEL seemed to be not appropriate for the cultivation in mountain area. The multi-disciplinary approach we adopted was effective in distinguish across hemp cultivars and provided information to farmers for the selection of the best hemp cultivar to select. Hemp had a high potential for cultivation in marginal lands, demonstrating to be an economic resource due to its multi-purpose use and to the possibility to generate high-added values products. Our results could serve as a stimulus for the reintroduction of this culture in the study area and in other similar environments.
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Affiliation(s)
- Elisa Scalabrin
- National Research Council, Polar Science Institute, Venice-Mestre, Italy
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
| | - Marta Radaelli
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
| | - Gabriele Capodaglio
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
| | - Manuela Pierobon
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
| | - Silvia Del Vecchio
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
- Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, Bologna, Italy
| | - Gabriella Buffa
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca’ Foscari, Venice-Mestre, Italy
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Fatnani D, Patel M, Parida AK. Regulation of chromium translocation to shoot and physiological, metabolomic, and ionomic adjustments confer chromium stress tolerance in the halophyte Suaeda maritima. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 320:121046. [PMID: 36627045 DOI: 10.1016/j.envpol.2023.121046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 10/17/2022] [Accepted: 01/06/2023] [Indexed: 06/17/2023]
Abstract
Chromium (Cr) is a highly toxic element adversely affecting the environment, cultivable lands, and human populations. The present study investigated the effects of Cr (VI) (100-400 μM) on plant morphology and growth, photosynthetic pigments, organic osmolytes, ionomics, and metabolomic dynamics of the halophyte Suaeda maritima to decipher the Cr tolerance mechanisms. Cr exposure reduced the growth and biomass in S. maritima. The photosynthetic pigments content significantly declined at higher Cr concentrations (400 μM). However, at lower Cr concentrations (100-300 μM), the photosynthetic pigments remained unaffected or increased. The results suggest that a high concentration of Cr exposure might have adverse effects on PS II in S. maritima. The enhanced uptake of Na+ in S. maritima imposed to Cr stress indicates that Na+ might have a pivotal role in osmotic adjustment, thereby maintaining water status under Cr stress. The proline content was significantly upregulated in Cr-treated plants suggesting its role in maintaining osmotic balance and scavenging ROS. The metabolomic analysis of control and 400 μM Cr treated plants led to the identification of 62 metabolites. The fold chain analysis indicated the upregulation of several metabolites, including phytohormones (SA and GA3), polyphenols (cinnamic acid, sinapic acid, coumaric acid, vanillic acid, and syringic acid), and amino acids (alanine, leucine, proline, methionine, and cysteine) under Cr stress. The upregulation of these metabolites suggests the enhanced metal chelation and sequestration in vacuoles, reducing oxidative stress by scavenging ROS and promoting photosynthesis by maintaining the chloroplast membrane structure and photosynthetic pigments. Furthermore, in S. maritima, Cr tolerance index (Ti) was more than 60% in all the treatments, and Cr bio-concentration factor (BCF) and translocation factor (Tf) values were all greater than 1.0, which clearly indicates the Cr-hyperaccumulator characteristics of this halophyte.
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Affiliation(s)
- Dhara Fatnani
- Plant Omics Division, CSIR- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Gijubhai Badheka Marg, Bhavnagar, 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Monika Patel
- Plant Omics Division, CSIR- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Gijubhai Badheka Marg, Bhavnagar, 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Asish Kumar Parida
- Plant Omics Division, CSIR- Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Gijubhai Badheka Marg, Bhavnagar, 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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Comparative Metabolomic Profiling of Horse Gram ( Macrotyloma uniflorum (Lam.) Verdc.) Genotypes for Horse Gram Yellow Mosaic Virus Resistance. Metabolites 2023; 13:metabo13020165. [PMID: 36837784 PMCID: PMC9960754 DOI: 10.3390/metabo13020165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/10/2023] [Accepted: 01/18/2023] [Indexed: 01/25/2023] Open
Abstract
Horse gram (Macrotyloma uniflorum (Lam.) Verdc.) is an under-utilized legume grown in India. It is a good source of protein, carbohydrates, dietary fiber, minerals, and vitamins. We screened 252 horse gram germplasm accessions for horse gram yellow mosaic virus resistance using the percent disease index and scaling techniques. The percentage values of highly resistant, moderately resistant, moderately susceptible, susceptible, and highly susceptible were 0.34, 13.89, 38.89, 46.43, and 0.34, respectively. Repetitive trials confirmed the host-plant resistance levels, and yield loss was assessed. The present disease index ranged from 1.2 to 72.0 and 1.2 to 73.0 during the kharif and rabi seasons of 2018, respectively. The maximum percent yield loss was noticed in the HS (75.0 -89.4), while HR possessed the minimum (1.2-2.0). The methanolic leaf extracts of highly resistant and highly susceptible genotypes with essential controls were subjected to gas chromatography-mass spectrometry analysis. Differential accumulation of metabolites was noticed, and a total of 81 metabolites representing 26 functional groups were identified. Both highly resistant and susceptible genotypes harbored eight unique classes, while ten biomolecules were common. The hierarchical cluster analysis indicated a distinct metabolite profile. Fold change in the common metabolites revealed an enhanced accumulation of sugars, alkanes, and carboxylic acids in the highly resistant genotype. The principal component analysis plots explained 93.7% of the variation. The metabolite profile showed a significant accumulation of three anti-viral (octadecanoic acid, diphenyl sulfone, and 2-Aminooxazole), one insecticidal (9,10-Secocholesta-5,7,10(19)-triene-3,24,25-triol), one antifeedant (cucurbitacin B), and six metabolites with unknown biological function in the highly resistant genotype.
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Chromatographic Profiling with Machine Learning Discriminates the Maturity Grades of Nicotiana tabacum L. Leaves. SEPARATIONS 2021. [DOI: 10.3390/separations8010009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Nicotiana tabacum L. (NTL) is an important agricultural and economical crop. Its maturity is one of the key factors affecting its quality. Traditionally, maturity is discriminated visually by humans, which is subjective and empirical. In this study, we concentrated on detecting as many compounds as possible in NTL leaves from different maturity grades using ultra-performance liquid chromatography ion trap time-of-flight mass spectrometry (UPLC-IT-TOF/MS). Then, the low-dimensional embedding of LC-MS dataset by t-distributed stochastic neighbor embedding (t-SNE) clearly showed the separation of the leaves from different maturity grades. The discriminant models between different maturity grades were established using orthogonal partial least squares discriminant analysis (OPLS-DA). The quality metrics of the models are R2Y = 0.939 and Q2 = 0.742 (unripe and ripe), R2Y = 0.900 and Q2 = 0.847 (overripe and ripe), and R2Y = 0.972 and Q2 = 0.930 (overripe and unripe). The differential metabolites were screened by their variable importance in projection (VIP) and p-Values. The existing tandem mass spectrometry library of plant metabolites, the user-defined library of structures, and MS-FINDER were combined to identify these metabolites. A total of 49 compounds were identified, including 12 amines, 14 lipids, 10 phenols, and 13 others. The results can be used to discriminate the maturity grades of the leaves and ensure their quality.
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Gutsch A, Hendrix S, Guerriero G, Renaut J, Lutts S, Alseekh S, Fernie AR, Hausman JF, Vangronsveld J, Cuypers A, Sergeant K. Long-Term Cd Exposure Alters the Metabolite Profile in Stem Tissue of Medicago sativa. Cells 2020; 9:E2707. [PMID: 33348837 PMCID: PMC7765984 DOI: 10.3390/cells9122707] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Revised: 12/14/2020] [Accepted: 12/14/2020] [Indexed: 12/15/2022] Open
Abstract
As a common pollutant, cadmium (Cd) is one of the most toxic heavy metals accumulating in agricultural soils through anthropogenic activities. The uptake of Cd by plants is the main entry route into the human food chain, whilst in plants it elicits oxidative stress by unbalancing the cellular redox status. Medicago sativa was subjected to chronic Cd stress for five months. Targeted and untargeted metabolic analyses were performed. Long-term Cd exposure altered the amino acid composition with levels of asparagine, histidine and proline decreasing in stems but increasing in leaves. This suggests tissue-specific metabolic stress responses, which are often not considered in environmental studies focused on leaves. In stem tissue, profiles of secondary metabolites were clearly separated between control and Cd-exposed plants. Fifty-one secondary metabolites were identified that changed significantly upon Cd exposure, of which the majority are (iso)flavonoid conjugates. Cadmium exposure stimulated the phenylpropanoid pathway that led to the accumulation of secondary metabolites in stems rather than cell wall lignification. Those metabolites are antioxidants mitigating oxidative stress and preventing cellular damage. By an adequate adjustment of its metabolic composition, M. sativa reaches a new steady state, which enables the plant to acclimate under chronic Cd stress.
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Affiliation(s)
- Annelie Gutsch
- GreenTech Innovation Center, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, 4362 Esch-sur-Alzette, Luxembourg; (A.G.); (G.G.); (J.R.); (J.-F.H.)
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, 3590 Diepenbeek, Belgium; (S.H.); (J.V.); (A.C.)
| | - Sophie Hendrix
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, 3590 Diepenbeek, Belgium; (S.H.); (J.V.); (A.C.)
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Friedrich-Ebert-Allee 144, 53113 Bonn, Germany
| | - Gea Guerriero
- GreenTech Innovation Center, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, 4362 Esch-sur-Alzette, Luxembourg; (A.G.); (G.G.); (J.R.); (J.-F.H.)
| | - Jenny Renaut
- GreenTech Innovation Center, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, 4362 Esch-sur-Alzette, Luxembourg; (A.G.); (G.G.); (J.R.); (J.-F.H.)
| | - Stanley Lutts
- Groupe de Recherche en Physiologie Végétale, Earth and Life Institute—Agronomy, Université Catholique de Louvain, 5, Place Croix du Sud, 1348 Louvain-la-Neuve, Belgium;
| | - Saleh Alseekh
- Max-Planck-Institute of Plant Molecular Physiology, Am Mühlenberg 1, 14476 Potsdam, Germany; (S.A.); (A.R.F.)
- Centre of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
| | - Alisdair R. Fernie
- Max-Planck-Institute of Plant Molecular Physiology, Am Mühlenberg 1, 14476 Potsdam, Germany; (S.A.); (A.R.F.)
- Centre of Plant Systems Biology and Biotechnology, 4000 Plovdiv, Bulgaria
| | - Jean-Francois Hausman
- GreenTech Innovation Center, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, 4362 Esch-sur-Alzette, Luxembourg; (A.G.); (G.G.); (J.R.); (J.-F.H.)
| | - Jaco Vangronsveld
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, 3590 Diepenbeek, Belgium; (S.H.); (J.V.); (A.C.)
| | - Ann Cuypers
- Centre for Environmental Sciences, Campus Diepenbeek, Hasselt University, Agoralaan Building D, 3590 Diepenbeek, Belgium; (S.H.); (J.V.); (A.C.)
| | - Kjell Sergeant
- GreenTech Innovation Center, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, Avenue des Hauts-Fourneaux, 4362 Esch-sur-Alzette, Luxembourg; (A.G.); (G.G.); (J.R.); (J.-F.H.)
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Morcol TB, Wysocki K, Sankaran RP, Matthews PD, Kennelly EJ. UPLC-QTof-MS E Metabolomics Reveals Changes in Leaf Primary and Secondary Metabolism of Hop ( Humulus lupulus L.) Plants under Drought Stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:14698-14708. [PMID: 33236890 DOI: 10.1021/acs.jafc.0c05987] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The hop (Humulus lupulus L.) is an important specialty crop used in beer production. Untargeted UPLC-QTof-MSE metabolomics was used to determine metabolite changes in the leaves of hop plants under varying degrees of drought stress. Principal component analysis revealed that drought treatments produced qualitatively distinct changes in the overall chemical composition of three out of four genotypes tested (i.e., Cascade, Sultana, and a wild var. neomexicanus accession but not Aurora), although differences among treatments were smaller than differences among genotypes. A total of 14 compounds consistently increased or decreased in response to drought stress, and this effect was generally progressive as the severity of drought increased. A total of 10 of these marker compounds were tentatively identified as follows: five glycerolipids, glutaric acid, pheophorbide A, abscisic acid, roseoside, and dihydromyricetin. Some of the observed metabolite changes likely occur across all plants under drought conditions, while others may be specific to hops or to the type of drought treatments performed.
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Affiliation(s)
- Taylan B Morcol
- Department of Biological Sciences, Lehman College, City University of New York, 250 Bedford Park Boulevard West, Bronx, New York 10468, United States
- Ph.D. Program in Biology, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
| | - Konrad Wysocki
- Department of Biological Sciences, Lehman College, City University of New York, 250 Bedford Park Boulevard West, Bronx, New York 10468, United States
| | - Renuka P Sankaran
- Department of Biological Sciences, Lehman College, City University of New York, 250 Bedford Park Boulevard West, Bronx, New York 10468, United States
- Ph.D. Program in Biology, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
| | - Paul D Matthews
- Department of Research and Development, Hopsteiner, S.S. Steiner, Inc., 1 West Washington Avenue, Yakima, Washington 98903, United States
| | - Edward J Kennelly
- Department of Biological Sciences, Lehman College, City University of New York, 250 Bedford Park Boulevard West, Bronx, New York 10468, United States
- Ph.D. Program in Biology, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, United States
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Islam M, Vigani G, Maffei ME. The Geomagnetic Field (GMF) Modulates Nutrient Status and Lipid Metabolism during Arabidopsis thaliana Plant Development. PLANTS (BASEL, SWITZERLAND) 2020; 9:plants9121729. [PMID: 33302398 PMCID: PMC7762565 DOI: 10.3390/plants9121729] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 12/03/2020] [Accepted: 12/04/2020] [Indexed: 05/03/2023]
Abstract
The Geomagnetic field (GMF) is a typical component of our planet. Plant perception of the GMF implies that any magnetic field (MF) variation would induce possible metabolic changes. In this work was we assessed the role of the GMF on Arabidopsis thaliana Col0 mineral nutrition and lipid metabolism during plant development. We reduced the local GMF (about 40 μT) to Near Null Magnetic Field (NNMF, about 30 nT) to evaluate the effects of GMF on Arabidopsis in a time-course (from rosette to seed-set) experiment by studying the lipid content (fatty acids, FA; and surface alkanes, SA) and mineral nutrients. The expression of selected genes involved in lipid metabolism was assessed by Real-Time PCR (qPCR). A progressive increase of SA with carbon numbers between 21 and 28 was found in plants exposed to NNMF from bolting to flowering developmental stages, whereas the content of some FA significantly (p < 0.05) increased in rosette, bolting and seed-set developmental stages. Variations in SA composition were correlated to the differential expression of several Arabidopsis 3-ketoacyl-CoAsynthase (KCS) genes, including KCS1, KCS5, KCS6, KCS8, and KCS12, a lipid transfer protein (LTPG1) and a lipase (LIP1). Ionomic analysis showed a significant variation in some micronutrients (Fe, Co, Mn and Ni) and macronutrients (Mg, K and Ca) during plant development of plants exposed to NNMF. The results of this work show that A. thaliana responds to variations of the GMF which are perceived as is typical of abiotic stress responses.
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Data on Herbivore Performance and Plant Herbivore Damage Identify the Same Plant Traits as the Key Drivers of Plant-Herbivore Interaction. INSECTS 2020; 11:insects11120865. [PMID: 33291794 PMCID: PMC7762045 DOI: 10.3390/insects11120865] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 11/27/2020] [Accepted: 12/02/2020] [Indexed: 11/16/2022]
Abstract
Data on plant herbivore damage as well as on herbivore performance have been previously used to identify key plant traits driving plant-herbivore interactions. The extent to which the two approaches lead to similar conclusions remains to be explored. We determined the effect of a free-living leaf-chewing generalist caterpillar, Spodoptera littoralis (Lepidoptera: Noctuidae), on leaf damage of 24 closely related plant species from the Carduoideae subfamily and the effect of these plant species on caterpillar growth. We used a wide range of physical defense leaf traits and leaf nutrient contents as the plant traits. Herbivore performance and leaf damage were affected by similar plant traits. Traits related to higher caterpillar mortality (higher leaf dissection, number, length and toughness of spines and lower trichome density) also led to higher leaf damage. This fits with the fact that each caterpillar was feeding on a single plant and, thus, had to consume more biomass of the less suitable plants to obtain the same amount of nutrients. The key plant traits driving plant-herbivore interactions identified based on data on herbivore performance largely corresponded to the traits identified as important based on data on leaf damage. This suggests that both types of data may be used to identify the key plant traits determining plant-herbivore interactions. It is, however, important to carefully distinguish whether the data on leaf damage were obtained in the field or in a controlled feeding experiment, as the patterns expected in the two environments may go in opposite directions.
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Figueiredo R, Portilla Llerena JP, Kiyota E, Ferreira SS, Cardeli BR, de Souza SCR, Dos Santos Brito M, Sodek L, Cesarino I, Mazzafera P. The sugarcane ShMYB78 transcription factor activates suberin biosynthesis in Nicotiana benthamiana. PLANT MOLECULAR BIOLOGY 2020; 104:411-427. [PMID: 32813231 DOI: 10.1007/s11103-020-01048-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 08/06/2020] [Indexed: 05/11/2023]
Abstract
KEY MESSAGE A sugarcane MYB present in the culm induces suberin biosynthesis and is involved both with fatty acid and phenolics metabolism. Few transcription factors have been described as regulators of cell wall polymers deposition in C4 grasses. Particularly, regulation of suberin biosynthesis in this group of plants remains poorly understood. Here, we showed that the sugarcane MYB transcription factor ShMYB78 is an activator of suberin biosynthesis and deposition. ShMYB78 was identified upon screening genes whose expression was upregulated in sugarcane internodes undergoing suberization during culm development or triggered by wounding. Agrobacterium-mediated transient expression of ShMYB78 in Nicotiana benthamiana leaves induced the ectopic deposition of suberin and its aliphatic and aromatic monomers. Further, the expression of suberin-related genes was induced by ShMYB78 heterologous expression in Nicotiana benthamiana leaves. ShMYB78 was shown to be a nuclear protein based on its presence in sugarcane internode nuclear protein extracts, and protoplast transactivation assays demonstrated that ShMYB78 activates the promoters of the sugarcane suberin biosynthetic genes β-ketoacyl-CoA synthase (ShKCS20) and caffeic acid-O-methyltransferase (ShCOMT). Our results suggest that ShMYB78 may be involved in the transcriptional regulation of suberin deposition, from fatty acid metabolism to phenylpropanoid biosynthesis, in sugarcane internodes.
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Affiliation(s)
- Raquel Figueiredo
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil.
- Department of Biology, Faculdade de Ciências, Universidade Do Porto, Rua Do Campo Alegre S/N, 4169-007, Porto, Portugal.
| | - Juan Pablo Portilla Llerena
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
| | - Eduardo Kiyota
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
| | - Sávio Siqueira Ferreira
- Department of Botany, Institute of Biosciences, University of São Paulo, São Paulo, 05508-090, Brazil
| | - Bárbara Rocha Cardeli
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
| | - Sarah Caroline Ribeiro de Souza
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
- Department of Botany, Federal University of São Carlos, PO Box 676, São Carlos, São Paulo, 13565-905, Brazil
| | - Michael Dos Santos Brito
- Institute of Science and Technology, Federal University of São Paulo, Campus São José dos Campos, São José dos Campos, 12231-280, Brazil
| | - Ladaslav Sodek
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
| | - Igor Cesarino
- Department of Botany, Institute of Biosciences, University of São Paulo, São Paulo, 05508-090, Brazil
| | - Paulo Mazzafera
- Department of Plant Biology, Institute of Biology, State University of Campinas, Campinas, 13083-862, Brazil
- Department of Crop Science, College of Agriculture Luiz de Queiroz, University of São Paulo, Piracicaba, 13418-900, Brazil
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11
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Scalabrin E, Radaelli M, Capodaglio G. Effects of Water Deficit and Heat Stress on Nicotiana langsdorffii Metabolomic Pattern Modified by Insertion of rolD Gene from Agrobacterium rhizogenes. Metabolites 2020; 10:E310. [PMID: 32751065 PMCID: PMC7463493 DOI: 10.3390/metabo10080310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 07/23/2020] [Accepted: 07/24/2020] [Indexed: 11/17/2022] Open
Abstract
Abiotic stresses are major factors that negatively affect plant growth and productivity. Plants have developed complex strategies to ensure their survival and reproduction under adverse conditions, activating mechanisms that involve changes at different metabolic levels. In order to select stress-resistant species, research has focused on molecular studies and genetic engineering, showing promising results. In this work, the insertion of the rolD gene from Agrobacterium rhizogenes into Nicotiana langsdorffii plants is investigated, in order to assess the potential of this genetic modification towards mitigating water and heat stresses. Different approaches were combined: a high-throughput metabolomics and ionomics study was performed, together with the determination of important plant phytohormones. The aim was to identify the influence of abiotic stresses on plants and to highlight the effects of the rolD genetic modification on plant stress response. The most relevant compounds for each kind of stress were identified, belonging mainly to the classes of lipids, acyl sugars, glycosides, and amino acid derivatives. Water stress (WS) determined a decrease of elements and secondary metabolites, while amino acids and their derivatives increased, proving to be key molecules in this type of stress. RolD plants exposed to high temperature stress (HS) presented higher dry weight levels than controls, as well as increased amounts of K and adenosine and lower levels of damage-associated metabolites, suggesting the increased resistance of rolD-modified plants toward HS.
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Affiliation(s)
- Elisa Scalabrin
- Department of Environmental Sciences, Informatics and Statistics, Ca’Foscari University of Venice, Via Torino 155, Mestre, 30173 Venezia, Italy; (M.R.); (G.C.)
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12
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Xu J, Zhou Y, Xu Z, Chen Z, Duan L. Combining Physiological and Metabolomic Analysis to Unravel the Regulations of Coronatine Alleviating Water Stress in Tobacco ( Nicotiana tabacum L.). Biomolecules 2020; 10:E99. [PMID: 31936106 PMCID: PMC7023163 DOI: 10.3390/biom10010099] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Revised: 12/30/2019] [Accepted: 01/02/2020] [Indexed: 12/13/2022] Open
Abstract
Drought is a major abiotic stress that restricts plants growth, development, and yield. Coronatine (COR), a mimic of JA-Ile, functions in plant tolerance to multiple stresses. In our study, we examined the effects of COR in tobacco under polyethylene glycol (PEG) stress. COR treatment improved plant growth under stress as measured by fresh weight (FW) and dry weight (DW). The enzyme activity assay indicated that, under osmotic stress conditions, the activities of superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), and glutathione reductase (GR) were enhanced by COR treatment. Histochemical analyses via nitrotetrazolium blue chloride (NBT) and 3,3'-diaminobenzidine (DAB) staining showed that COR reduced reactive oxygen species (ROS) accumulation during osmotic stress. Metabolite profiles revealed that COR triggered significant metabolic changes in tobacco leaves under osmotic stress, and many essential metabolites, such as sugar and sugar derivatives, organic acids, and nitrogen-containing compounds, which might play active roles in osmotic-stressed tobacco plants, were markedly accumulated in the COR-treated tobacco. The work presented here provides a comprehensive understanding of the COR-mediated physiological, biochemical, and metabolic adjustments that minimize the adverse impact of osmotic stress on tobacco.
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Affiliation(s)
- Jiayang Xu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China; (J.X.); (Y.Z.)
| | - Yuyi Zhou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China; (J.X.); (Y.Z.)
| | - Zicheng Xu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China; (Z.X.); (Z.C.)
| | - Zheng Chen
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China; (Z.X.); (Z.C.)
| | - Liusheng Duan
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China; (J.X.); (Y.Z.)
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13
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Gonzalez Ibarra AA, Wrobel K, Yanez Barrientos E, Corrales Escobosa AR, Gutierrez Corona JF, Enciso Donis I, Wrobel K. Impact of Cr(VI) on the oxidation of polyunsaturated fatty acids in Helianthus annuus roots studied by metabolomic tools. CHEMOSPHERE 2019; 220:442-451. [PMID: 30594795 DOI: 10.1016/j.chemosphere.2018.12.145] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 11/27/2018] [Accepted: 12/19/2018] [Indexed: 05/28/2023]
Abstract
The impact of Cr(VI) in sunflower roots has been studied, focusing on the oxidation of polyunsaturated fatty acids. Plants were grown hydroponically in the presence of 0, 1.0, 5.0 and 25 mgCr L-1. Methanolic root extracts were analyzed by capillary liquid chromatography coupled through negative electrospray ionization to a quadrupole-time of flight mass spectrometry (capHPLC-ESI-QTOF-MS). Using partial least squares algorithm, eighteen features strongly affected by Cr(VI) were detected and annotated as linoleic acid (LA), alpha-linolenic acid (ALA) and sixteen oxidation products containing hydroperoxy-, epoxy-, keto-, epoxyketo- or hydroxy-functionalities, all of them classified as oxylipins. Inspection of the MS/MS spectra acquired for features eluting at different retention times but assigned as a sole compound, confirmed isomers formation: three hydroperoxy-octadecadienoic acids (HpODE), two oxo-octadecadienoic acids (OxoODE) and four epoxyketo-octadecenoic acids (EKODE). Around 70% of metabolites in sunflower LA metabolic pathway were affected by Cr(VI) stress and additionally, four EKODE isomers not included in this pathway were found in the exposed roots. Among ALA-derived oxylipins, 13-epi-12-oxo-phytodienoic acid (OPDA) is of relevance, because of its participation in the activation of secondary metabolism. The abundances of all oxylipins were directly dependent on the Cr(VI) concentration in medium; furthermore, autooxidation of LA to HpODE isomers was observed after incubation with Cr(VI). These results point to the direct involvement of Cr(VI) in non-enzymatic oxidation of fatty acids; since oxylipins are signaling molecules important in plant defensive response, their synthesis under Cr(VI) exposure sustains the ability of sunflower to grow in Cr(VI)-contaminated environments.
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Affiliation(s)
| | - Katarzyna Wrobel
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, Mexico
| | | | | | | | - Israel Enciso Donis
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, Mexico
| | - Kazimierz Wrobel
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, Mexico.
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14
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Vu LD, Zhu T, Verstraeten I, van de Cotte B, Gevaert K, De Smet I. Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4609-4624. [PMID: 29939309 PMCID: PMC6117581 DOI: 10.1093/jxb/ery204] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 05/16/2018] [Indexed: 05/20/2023]
Abstract
Wheat (Triticum ssp.) is one of the most important human food sources. However, this crop is very sensitive to temperature changes. Specifically, processes during wheat leaf, flower, and seed development and photosynthesis, which all contribute to the yield of this crop, are affected by high temperature. While this has to some extent been investigated on physiological, developmental, and molecular levels, very little is known about early signalling events associated with an increase in temperature. Phosphorylation-mediated signalling mechanisms, which are quick and dynamic, are associated with plant growth and development, also under abiotic stress conditions. Therefore, we probed the impact of a short-term and mild increase in temperature on the wheat leaf and spikelet phosphoproteome. In total, 3822 (containing 5178 phosphosites) and 5581 phosphopeptides (containing 7023 phosphosites) were identified in leaf and spikelet samples, respectively. Following statistical analysis, the resulting data set provides the scientific community with a first large-scale plant phosphoproteome under the control of higher ambient temperature. This community resource on the high temperature-mediated wheat phosphoproteome will be valuable for future studies. Our analyses also revealed a core set of common proteins between leaf and spikelet, suggesting some level of conserved regulatory mechanisms. Furthermore, we observed temperature-regulated interconversion of phosphoforms, which probably impacts protein activity.
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Affiliation(s)
- Lam Dai Vu
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
- Department of Biochemistry, Ghent University, Ghent, Belgium
- VIB-UGent Center for Medical Biotechnology, Ghent, Belgium
| | - Tingting Zhu
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
- Department of Biochemistry, Ghent University, Ghent, Belgium
- VIB-UGent Center for Medical Biotechnology, Ghent, Belgium
| | - Inge Verstraeten
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | - Brigitte van de Cotte
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
| | | | - Kris Gevaert
- Department of Biochemistry, Ghent University, Ghent, Belgium
- VIB-UGent Center for Medical Biotechnology, Ghent, Belgium
| | - Ive De Smet
- Ghent University, Department of Plant Biotechnology and Bioinformatics, Ghent, Belgium
- VIB Center for Plant Systems Biology, Ghent, Belgium
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15
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Ullah N, Yüce M, Neslihan Öztürk Gökçe Z, Budak H. Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species. BMC Genomics 2017; 18:969. [PMID: 29246190 PMCID: PMC5731210 DOI: 10.1186/s12864-017-4321-2] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Accepted: 11/21/2017] [Indexed: 12/17/2022] Open
Abstract
BACKGROUND Drought is a lifestyle disease. Plant metabolomics has been exercised for understanding the fine-tuning of the potential pathways to surmount the adverse effects of drought stress. A broad spectrum of morphological and metabolic responses from seven Triticeae species including wild types with different drought tolerance/susceptibility level was investigated under control and water scarcity conditions. RESULTS Significant morphological parameters measured were root length, surface area, average root diameter and overall root development. Principal Component Analysis, Partial Least-Squares-Discriminant Analysis and Hierarchical Cluster Analysis were applied to the metabolomic data obtained by Gas Chromatography-Mass Spectrometry technique in order to determine the important metabolites of the drought tolerance across seven different Triticeae species. The metabolites showing significant accumulation under the drought stress were considered as the key metabolites and correlated with potential biochemical pathways, enzymes or gene locations for a better understanding of the tolerance mechanisms. In all tested species, 45 significantly active metabolites with possible roles in drought stress were identified. Twenty-one metabolites out of forty-five including sugars, amino acids, organic acids and low molecular weight compounds increased in both leaf and root samples of TR39477, IG132864 and Bolal under the drought stress, contrasting to TTD-22, Tosunbey, Ligustica and Meyeri samples. Three metabolites including succinate, aspartate and trehalose were selected for further genome analysis due to their increased levels in TR39477, IG132864, and Bolal upon drought stress treatment as well as their significant role in energy producing biochemical pathways. CONCLUSION These results demonstrated that the genotypes with high drought tolerance skills, especially wild emmer wheat, have a great potential to be a genetic model system for experiments aiming to validate metabolomics-genomics networks.
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Affiliation(s)
- Naimat Ullah
- Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Istanbul, Turkey
| | - Meral Yüce
- Nanotechnology Research and Application Centre, Sabanci University, 34956, Istanbul, Turkey
| | - Z Neslihan Öztürk Gökçe
- Ayhan Sahenk Faculty of Agricultural Sciences and Technologies, Nigde Omer Halisdemir University, 51240, Nigde, Turkey
| | - Hikmet Budak
- Department of Plant Science and Plant Pathology, Montana State University, Bozeman, MT, USA.
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Gonzalez Ibarra AA, Wrobel K, Yanez Barrientos E, Corrales Escobosa AR, Gutierrez Corona JF, Enciso Donis I, Wrobel K. Changes of Metabolomic Profile in Helianthus annuus under Exposure to Chromium(VI) Studied by capHPLC-ESI-QTOF-MS and MS/MS. JOURNAL OF ANALYTICAL METHODS IN CHEMISTRY 2017; 2017:3568621. [PMID: 29359067 PMCID: PMC5735654 DOI: 10.1155/2017/3568621] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Revised: 08/04/2017] [Accepted: 09/13/2017] [Indexed: 06/01/2023]
Abstract
The application of capHPLC-ESI-QTOF-MS and MS/MS to study the impact of Cr(VI) on metabolites profile in Helianthus annuus is reported. Germinated seeds were grown hydroponically in the presence of Cr(VI) (25 mgCr/L) and root extracts of the exposed and control plants were analyzed by untargeted metabolomic approach. The main goal was to detect which metabolite groups were mostly affected by Cr(VI) stress; two data analysis tools (ProfileAnalysis, Bruker, and online XCMS) were used under criteria of intensity threshold 5 · 104 cps, fold change ≥ 5, and p ≤ 0.01, yielding precursor ions. Molecular formulas were assigned based on data processing with two computational tools (SIRIUS and MS-Finder); annotation of candidate structures was performed by database search using CSI:FingerID and MS-Finder. Even though ultimate identification has not been achieved, it was demonstrated that secondary metabolism became activated under Cr(VI) stress. Among 42 candidate compounds returned from database search for seven molecular formulas, ten structures corresponded to isocoumarin derivatives and eleven were sesquiterpenes or sesquiterpene lactones; three benzofurans and four glycoside or pyrane derivatives of phenolic compounds were also suggested. To gain further insight on the effect of Cr(VI) in sunflower, isocoumarins and sesquiterpenes were selected as the target compounds for future study.
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Affiliation(s)
| | - Kazimierz Wrobel
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, GTO, Mexico
| | - Eunice Yanez Barrientos
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, GTO, Mexico
| | | | | | - Israel Enciso Donis
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, GTO, Mexico
| | - Katarzyna Wrobel
- Chemistry Department, University of Guanajuato, L. de Retana 5, 36000 Guanajuato, GTO, Mexico
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17
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Inorganic markers profiling in wild type and genetically modified plants subjected to abiotic stresses. Microchem J 2017. [DOI: 10.1016/j.microc.2017.04.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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18
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Liu YN, Zhang TJ, Lu XX, Ma BL, Ren A, Shi L, Jiang AL, Yu HS, Zhao MW. Membrane fluidity is involved in the regulation of heat stress induced secondary metabolism in Ganoderma lucidum. Environ Microbiol 2017; 19:1653-1668. [PMID: 28198137 DOI: 10.1111/1462-2920.13693] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2016] [Accepted: 02/06/2017] [Indexed: 01/17/2023]
Abstract
Ganoderma lucidum has become a potential model system for evaluating how environmental factors regulate the secondary metabolism of basidiomycetes. Heat stress (HS) is one of the most important environmental factors. It was previously reported that HS could induce the biosynthesis of ganoderic acids (GA). In this study, we found that HS increased GA biosynthesis and also significantly increased cell membrane fluidity. Furthermore, our results showed that addition of the membrane rigidifier dimethylsulfoxide (DMSO) could revert the increased GA biosynthesis elicited by HS. These results indicate that an increase in membrane fluidity is associated with HS-induced GA biosynthesis. Further evidence showed that the GA content was decreased in D9des-silenced strains and could be reverted to WT levels by addition of the membrane fluidizer benzyl alcohol (BA). In contrast, GA content was increased in D9des-overexpression strains and could be reverted to WT levels by the addition of DMSO. Furthermore, both membrane fluidity and GA biosynthesis induced by HS could be reverted by DMSO in WT and D9des-silenced strains. To the best of our knowledge, this is the first report demonstrating that membrane fluidity is involved in the regulation of heat stress induced secondary metabolism in filamentous fungi.
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Affiliation(s)
- Yong-Nan Liu
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Tian-Jun Zhang
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Xiao-Xiao Lu
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Bao-Liang Ma
- Department of Physics, Science of College, Nanjing Agricultural University, Nanjing, 210095, P.R China
| | - Ang Ren
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Liang Shi
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Ai-Liang Jiang
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Han-Shou Yu
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
| | - Ming-Wen Zhao
- Key Laboratory of Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, P.R. China
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Legay S, Guerriero G, André C, Guignard C, Cocco E, Charton S, Boutry M, Rowland O, Hausman JF. MdMyb93 is a regulator of suberin deposition in russeted apple fruit skins. THE NEW PHYTOLOGIST 2016; 212:977-991. [PMID: 27716944 DOI: 10.1111/nph.14170] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Accepted: 07/05/2016] [Indexed: 05/19/2023]
Abstract
A comparison of the transcriptomes of russeted vs nonrusseted apple skins previously highlighted a tight relationship between a gene encoding an MYB-type transcription factor, MdMYB93, and some key suberin biosynthetic genes. The present work assesses the role of this transcription factor in the suberization process. A phylogenetic analysis of MdMYB93 and Arabidopsis thaliana MYBs was performed and the function of MdMYB93 was further investigated using Agrobacterium-mediated transient overexpression in Nicotiana benthamiana leaves. An RNA-Seq analysis was performed to highlight the MdMYB93-regulated genes. Ultraperformance liquid chromatography-triple time-of-flight (UPLC-TripleTOF) and GC-MS were used to investigate alterations in phenylpropanoid, soluble-free lipid and lipid polyester contents. A massive accumulation of suberin and its biosynthetic precursors in MdMYB93 agroinfiltrated leaves was accompanied by a remobilization of phenylpropanoids and an increased amount of lignin precursors. Gene expression profiling displayed a concomitant alteration of lipid and phenylpropanoid metabolism, cell wall development, and extracellular transport, with a large number of induced transcripts predicted to be involved in suberin deposition. The present work supports a major role of MdMYB93 in the regulation of suberin deposition in russeted apple skins, from the synthesis of monomeric precursors, their transport, polymerization, and final deposition as suberin in primary cell wall.
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Affiliation(s)
- Sylvain Legay
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
- Institut des Sciences de la Vie, UCLouvain, Louvain-la-Neuve, B-1348, Belgium
| | - Gea Guerriero
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
| | - Christelle André
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
| | - Cédric Guignard
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
| | - Emmanuelle Cocco
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
| | - Sophie Charton
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
| | - Marc Boutry
- Institut des Sciences de la Vie, UCLouvain, Louvain-la-Neuve, B-1348, Belgium
| | - Owen Rowland
- Department of Biology and Institute of Biochemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON, K1S 5B6, Canada
| | - Jean-Francois Hausman
- Luxembourg Institute of Science and Technology, 5 Avenue des Hauts-Fourneaux, Esch/Alzette, L-4362, Luxembourg
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A new exploration of licorice metabolome. Food Chem 2016; 221:959-968. [PMID: 27979300 DOI: 10.1016/j.foodchem.2016.11.068] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Revised: 10/25/2016] [Accepted: 11/16/2016] [Indexed: 12/14/2022]
Abstract
The roots and rhizomes of licorice plants (genus Glycyrrhiza L.) are commercially employed, after processing, in confectionery production or as sweetening and flavouring agents in the food, tobacco and beer industries. G. glabra, G. inflata and G. uralensis are the most significant licorice species, often indistinctly used for different productions. Licorice properties are directly related to its chemical composition, which determines the commercial values and the quality of the derived products. In order to better understand the characteristics and properties of each species, a chemical characterization of three species of licorice (G. glabra, G. inflata, G. uralensis) is proposed, through an untargeted metabolomic approach and using high-resolution mass spectrometry. The statistical analysis reveals new possible markers for the analyzed species, and provides a reliable identification of a high number of metabolites, contributing to the characterization of Glycyrrhiza metabolome.
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Heat Stress Modulates Mycelium Growth, Heat Shock Protein Expression, Ganoderic Acid Biosynthesis, and Hyphal Branching of Ganoderma lucidum via Cytosolic Ca2. Appl Environ Microbiol 2016; 82:4112-4125. [PMID: 27129961 DOI: 10.1128/aem.01036-16] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Accepted: 04/25/2016] [Indexed: 12/23/2022] Open
Abstract
UNLABELLED Heat stress (HS) influences the growth and development of organisms. Thus, a comprehensive understanding of how organisms sense HS and respond to it is required. Ganoderma lucidum, a higher basidiomycete with bioactive secondary metabolites, has become a potential model system due to the complete sequencing of its genome, transgenic systems, and reliable reverse genetic tools. In this study, we found that HS inhibited mycelium growth, reduced hyphal branching, and induced the accumulation of ganoderic acid biosynthesis and heat shock proteins (HSPs) in G. lucidum Our data showed that HS induced a significant increase in cytosolic Ca(2+) concentration. Further evidence showed that Ca(2+) might be a factor in the HS-mediated regulation of hyphal branching, ganoderic acid (GA) biosynthesis, and the accumulation of HSPs. Our results further showed that the calcium-permeable channel gene (cch)-silenced and phosphoinositide-specific phospholipase gene (plc)-silenced strains reduced the HS-induced increase in HSP expression compared with that observed for the wild type (WT). This study demonstrates that cytosolic Ca(2+) participates in heat shock signal transduction and regulates downstream events in filamentous fungi. IMPORTANCE Ganoderma lucidum, a higher basidiomycete with bioactive secondary metabolites, has become a potential model system for evaluating how environmental factors regulate the development and secondary metabolism of basidiomycetes. Heat stress (HS) is an important environmental challenge. In this study, we found that HS inhibited mycelium growth, reduced hyphal branching, and induced HSP expression and ganoderic acid biosynthesis in G. lucidum Further evidence showed that Ca(2+) might be a factor in the HS-mediated regulation of hyphal branching, GA biosynthesis, and the accumulation of HSPs. This study demonstrates that cytosolic Ca(2+) participates in heat shock signal transduction and regulates downstream events in filamentous fungi. Our research offers a new way to understand the mechanism underlying the physiological and metabolic responses to other environmental factors in G. lucidum This research may also provide the basis for heat shock signal transduction studies of other fungi.
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22
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Scalabrin E, Radaelli M, Capodaglio G. Simultaneous determination of shikimic acid, salicylic acid and jasmonic acid in wild and transgenic Nicotiana langsdorffii plants exposed to abiotic stresses. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 103:53-60. [PMID: 26966898 DOI: 10.1016/j.plaphy.2016.02.040] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Revised: 02/18/2016] [Accepted: 02/26/2016] [Indexed: 05/20/2023]
Abstract
The presence and relative concentration of phytohormones may be regarded as a good indicator of an organism's physiological state. The integration of the rolC gene from Agrobacterium rhizogenes and of the rat glucocorticoid receptor (gr) in Nicotiana langsdorffii Weinmann plants has shown to determine various physiological and metabolic effects. The analysis of wild and transgenic N. langsdorffii plants, exposed to different abiotic stresses (high temperature, water deficit, and high chromium concentrations) was conducted, in order to investigate the metabolic effects of the inserted genes in response to the applied stresses. The development of a new analytical procedure was necessary, in order to assure the simultaneous determination of analytes and to obtain an adequately low limit of quantification. For the first time, a sensitive HPLC-HRMS quantitative method for the simultaneous determination of salicylic acid, jasmonic acid and shikimic acid was developed and validated. The method was applied to 80 plant samples, permitting the evaluation of plant stress responses and highlighting some metabolic mechanisms. Salicylic, jasmonic and shikimic acids proved to be suitable for the comprehension of plant stress responses. Chemical and heat stresses showed to induce the highest changes in plant hormonal status, differently affecting plant response. The potential of each genetic modification toward the applied stresses was marked and particularly the resistance of the gr modified plants was evidenced. This work provides new information in the study of N. langsdorffii and transgenic organisms, which could be useful for the further application of these transgenes.
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Affiliation(s)
- Elisa Scalabrin
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca' Foscari, Via Torino 155, 30172 Venice, Italy.
| | - Marta Radaelli
- Institute for the Dynamics of Environmental Processes-CNR, University of Venice, Via Torino 155, 30172 Venice, Italy
| | - Gabriele Capodaglio
- Department of Environmental Sciences, Informatics and Statistics, University of Venice, Ca' Foscari, Via Torino 155, 30172 Venice, Italy; Institute for the Dynamics of Environmental Processes-CNR, University of Venice, Via Torino 155, 30172 Venice, Italy
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Ghaste M, Mistrik R, Shulaev V. Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics. Int J Mol Sci 2016; 17:ijms17060816. [PMID: 27231903 PMCID: PMC4926350 DOI: 10.3390/ijms17060816] [Citation(s) in RCA: 107] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Revised: 05/14/2016] [Accepted: 05/17/2016] [Indexed: 02/02/2023] Open
Abstract
Metabolomics, along with other "omics" approaches, is rapidly becoming one of the major approaches aimed at understanding the organization and dynamics of metabolic networks. Mass spectrometry is often a technique of choice for metabolomics studies due to its high sensitivity, reproducibility and wide dynamic range. High resolution mass spectrometry (HRMS) is a widely practiced technique in analytical and bioanalytical sciences. It offers exceptionally high resolution and the highest degree of structural confirmation. Many metabolomics studies have been conducted using HRMS over the past decade. In this review, we will explore the latest developments in Fourier transform mass spectrometry (FTMS) and Orbitrap based metabolomics technology, its advantages and drawbacks for using in metabolomics and lipidomics studies, and development of novel approaches for processing HRMS data.
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Affiliation(s)
- Manoj Ghaste
- Department of Biological Sciences, College of Arts and Sciences, University of North Texas, Denton, TX 76203, USA.
| | | | - Vladimir Shulaev
- Department of Biological Sciences, College of Arts and Sciences, University of North Texas, Denton, TX 76203, USA.
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