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Hahn T, Alzate MO, Leonhardt S, Tamang P, Zibek S. Current trends in medium-chain-length polyhydroxyalkanoates: Microbial production, purification, and characterization. Eng Life Sci 2024; 24:2300211. [PMID: 38845815 PMCID: PMC11151071 DOI: 10.1002/elsc.202300211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 02/05/2024] [Accepted: 02/21/2024] [Indexed: 06/09/2024] Open
Abstract
Polyhydroxyalkanoates (PHAs) have gained interest recently due to their biodegradability and versatility. In particular, the chemical compositions of medium-chain-length (mcl)-PHAs are highly diverse, comprising different monomers containing 6-14 carbon atoms. This review summarizes different feedstocks and fermentation strategies to enhance mcl-PHA production and briefly discusses the downstream processing. This review also provides comprehensive details on analytical tools for determining the composition and properties of mcl-PHA. Moreover, this study provides novel information by statistically analyzing the data collected from several reports on mcl-PHA to determine the optimal fermentation parameters (specific growth rate, PHA productivity, and PHA yield from various structurally related and unrelated substrates), mcl-PHA composition, molecular weight (MW), and thermal and mechanical properties, in addition to other relevant statistical values. The analysis revealed that the median PHA productivity observed in the fed-batch feeding strategy was 0.4 g L-1 h-1, which is eight times higher than that obtained from batch feeding (0.05 g L-1 h-1). Furthermore, 3-hydroxyoctanoate and -decanoate were the primary monomers incorporated into mcl-PHA. The investigation also determined the median glass transition temperature (-43°C) and melting temperature (47°C), which indicated that mcl-PHA is a flexible amorphous polymer at room temperature with a median MW of 104 kDa. However, information on the monomer composition or heterogeneity and the associated physical and mechanical data of mcl-PHAs is inadequate. Based on their mechanical values, the mcl-PHAs can be classified as semi-crystalline polymers (median crystallinity 23%) with rubber-like properties and a median elongation at break of 385%. However, due to the limited mechanical data available for mcl-PHAs with known monomer composition, identifying suitable processing tools and applications to develop mcl-PHAs further is challenging.
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Affiliation(s)
- Thomas Hahn
- Bioprocess DevelopmentFraunhofer Institute for Interfacial Engineering and Biotechnology IGBStuttgartGermany
| | - Melissa Ortega Alzate
- Bioprocess DevelopmentFraunhofer Institute for Interfacial Engineering and Biotechnology IGBStuttgartGermany
- Department of Chemical EngineeringUniversity of AntioquiaEl Carmen de ViboralColombia
| | - Steven Leonhardt
- Bioprocess DevelopmentFraunhofer Institute for Interfacial Engineering and Biotechnology IGBStuttgartGermany
| | - Pravesh Tamang
- Bioprocess DevelopmentFraunhofer Institute for Interfacial Engineering and Biotechnology IGBStuttgartGermany
| | - Susanne Zibek
- Bioprocess DevelopmentFraunhofer Institute for Interfacial Engineering and Biotechnology IGBStuttgartGermany
- Institute of Interfacial Engineering and Plasma Technology IGVPUniversity of StuttgartStuttgartGermany
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Sarvepalli M, Velidandi A, Korrapati N. Optimization of Siderophore Production in Three Marine Bacterial Isolates along with Their Heavy-Metal Chelation and Seed Germination Potential Determination. Microorganisms 2023; 11:2873. [PMID: 38138017 PMCID: PMC10746010 DOI: 10.3390/microorganisms11122873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/24/2023] [Accepted: 11/26/2023] [Indexed: 12/24/2023] Open
Abstract
Siderophores are low-molecular-weight and high-affinity molecules produced by bacteria under iron-limited conditions. Due to the low iron (III) (Fe+3) levels in surface waters in the marine environment, microbes produce a variety of siderophores. In the current study, halophilic bacteria Bacillus taeanensis SMI_1, Enterobacter sp., AABM_9, and Pseudomonas mendocina AMPPS_5 were isolated from marine surface water of Kalinga beach, Bay of Bengal (Visakhapatnam, Andhra Pradesh, India) and were investigated for siderophore production using the Chrome Azurol S (CAS) assay. The effect of various production parameters was also studied. The optimum production of siderophores for SMI_1 was 93.57% siderophore units (SU) (after 48 h of incubation at 30 °C, pH 8, sucrose as carbon source, sodium nitrate as nitrogen source, 0.4% succinic acid), and for AABM_9, it was 87.18 %SU (after 36 h of incubation period at 30 °C, pH 8, in the presence of sucrose, ammonium sulfate, 0.4% succinic acid). The maximum production of siderophores for AMPPS_5 was 91.17 %SU (after 36 h of incubation at 35 °C, pH 8.5, glucose, ammonium sulfate, 0.4% citric acid). The bacterial isolates SMI_1, AABM_9, and AMPPS_5 showed siderophore production at low Fe+3 concentrations of 0.10 µM, 0.01 µM, and 0.01 µM, respectively. The SMI_1 (73.09 %SU) and AMPPS_5 (68.26 %SU) isolates showed siderophore production in the presence of Zn+2 (10 µM), whereas AABM_9 (50.4 %SU) exhibited siderophore production in the presence of Cu+2 (10 µM). Additionally, these bacterial isolates showed better heavy-metal chelation ability and rapid development in seed germination experiments. Based on these results, the isolates of marine-derived bacteria effectively produced the maximum amount of siderophores, which could be employed in a variety of industrial and environmental applications.
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Affiliation(s)
| | | | - Narasimhulu Korrapati
- Department of Biotechnology, National Institute of Technology Warangal, Warangal 506004, Telangana, India; (M.S.); (A.V.)
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Hao X, Li H, Yuan T, Wu Y. Recovering and potentially applying of alginate like extracellular polymers from anaerobic digested sludge. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 898:165549. [PMID: 37454849 DOI: 10.1016/j.scitotenv.2023.165549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/10/2023] [Accepted: 07/13/2023] [Indexed: 07/18/2023]
Abstract
Extracellular polymeric substances (EPS) are biopolymers contained in both aerobic and anaerobic sludge. In EPS, alginate like extracellular polymers (ALE) is thought as a highly valued material, which have been widely studied with aerobic sludge. Nevertheless, a curiosity on ALE remains in anaerobic digested sludge (ADS). With 5 different sludge sources, anaerobic digestion of excess sludge was conducted in a batch mode, and then ADS was used to extract ALE and to analyze its physicochemical properties for potential applications. The yield of ALE extracted from ADS (ALE-ADS) ranged from 119.4 to 179.4 mg/g VSS. The compositional characteristics of ALE-ADS observed by FT-IR, 3D-EEM and UV-Vis spectroscopy revealed that there were minor differences in the composition and property of ALE-ADS but a similarity of 62 %-70 % to a commercial alginate remained in terms of chemical functional groups. Moreover, ALE-ADS composed of 1,4-linked β-d-mannuronic acid (M) and 1,4 α-l-guluronic acid (G) residues that form blocks of GG (20.8 %-33.8 %), MG (12.8 %-30.1 %) and MM (6.6 %-15.1 %), respectively. Based on the gel-forming capacity, film-forming property, adsorbility, and amphiphilicity, ALE-ADS seems potential as a water-proof coating with even a better performance than the commercial alginate, as a seed coating with an increased germination rate, and as a bio-adsorbent with a similar performance to the commercial alginate and ALE from aerobic sludge.
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Affiliation(s)
- Xiaodi Hao
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China.
| | - Hui Li
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China
| | - Tugui Yuan
- Sino-Dutch R&D Centre for Future Wastewater Treatment Technologies, Beijing University of Civil Engineering and Architecture, Beijing 100044, PR China
| | - Yuanyuan Wu
- Beijing Capital Eco-Environment Protection Group Co., Ltd., Beijing 100044, PR China
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4
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Zhang C, Li M, Rauf A, Khalil AA, Shan Z, Chen C, Rengasamy KRR, Wan C. Process and applications of alginate oligosaccharides with emphasis on health beneficial perspectives. Crit Rev Food Sci Nutr 2023; 63:303-329. [PMID: 34254536 DOI: 10.1080/10408398.2021.1946008] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Alginates are linear polymers comprising 40% of the dry weight of algae possess various applications in food and biomedical industries. Alginate oligosaccharides (AOS), a degradation product of alginate, is now gaining much attention for their beneficial role in food, pharmaceutical and agricultural industries. Hence this review was aimed to compile the information on alginate and AOS (prepared from seaweeds) during 1994-2020. As per our knowledge, this is the first review on the potential use of alginate oligosaccharides in different fields. The alginate derivatives are grouped according to their applications. They are involved in the isolation process and show antimicrobial, antioxidant, anti-inflammatory, antihypertension, anticancer, and immunostimulatory properties. AOS also have significant applications in prebiotics, nutritional supplements, plant growth development and others products.
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Affiliation(s)
- Chunhua Zhang
- College of Agriculture and Forestry, Pu'er University, Pu'er, Yunnan, China
| | - Mingxi Li
- Research Center of Tea and Tea Culture, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Abdur Rauf
- Department of Chemistry, University of Swabi, Khyber Pakhtunkhwa (KP), Pakistan
| | - Anees Ahmed Khalil
- University Institute of Diet and Nutritional Sciences, Faculty of Diet and Nutritional Sciences, The University of Lahore, Lahore, Pakistan
| | - Zhiguo Shan
- College of Agriculture and Forestry, Pu'er University, Pu'er, Yunnan, China
| | - Chuying Chen
- Research Center of Tea and Tea Culture, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Kannan R R Rengasamy
- Green Biotechnologies Research Centre of Excellence, University of Limpopo, Polokwane, Sovenga, South Africa
| | - Chunpeng Wan
- Research Center of Tea and Tea Culture, College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
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Deng C, Zhao M, Zhao Q, Zhao L. Advances in green bioproduction of marine and glycosaminoglycan oligosaccharides. Carbohydr Polym 2022; 300:120254. [DOI: 10.1016/j.carbpol.2022.120254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 10/18/2022] [Accepted: 10/19/2022] [Indexed: 11/02/2022]
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Zhang P, Yuan L, Zeng J, Zou K, Liu B, Qing T, Feng B. Alginate production of Pseudomonas strains and its application in preparation of alginate-biomass hydrogel for heavy metal adsorption. Int J Biol Macromol 2022; 222:1511-1521. [DOI: 10.1016/j.ijbiomac.2022.09.252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 09/21/2022] [Accepted: 09/27/2022] [Indexed: 11/29/2022]
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7
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Kondratyev V, Goryacheva D, Nepomnyaschiy A, Zubkov I, Shishlyannikov S, Sorokoumov P. Quantitative analysis of medium-chain polyhydroxyalkanoates in bacterial cells via gas chromatography-mass spectrometry: classical method revision and optimization. INTERNATIONAL JOURNAL OF POLYMER ANALYSIS AND CHARACTERIZATION 2021. [DOI: 10.1080/1023666x.2021.1992581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Vadim Kondratyev
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
| | - Darya Goryacheva
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
| | - Anatoliy Nepomnyaschiy
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
| | - Ilya Zubkov
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
| | - Sergey Shishlyannikov
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
| | - Pavel Sorokoumov
- Department of Biotechnology, All-Russia Research Institute for Food Additives — Branch of V.M. Gorbatov Federal Research Center for Food Systems of RAS, St. Petersburg, Russia
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Mrudulakumari Vasudevan U, Lee OK, Lee EY. Alginate derived functional oligosaccharides: Recent developments, barriers, and future outlooks. Carbohydr Polym 2021; 267:118158. [PMID: 34119132 DOI: 10.1016/j.carbpol.2021.118158] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 04/14/2021] [Accepted: 04/14/2021] [Indexed: 02/07/2023]
Abstract
Alginate is a biopolymer used extensively in the food, pharmaceutical, and chemical industries. Alginate oligosaccharides (AOS) derived from alginate exhibit superior biological activities and therapeutic potential. Alginate lyases with characteristic substrate specificity can facilitate the production of a broad array of AOS with precise structure and functionality. By adopting innovative analytical tools in conjunction with focused clinical studies, the structure-bioactivity relationship of a number of AOS has been brought to light. This review covers fundamental aspects and recent developments in AOS research. Enzymatic and microbial processes involved in AOS production from brown algae and sequential steps involved in AOS structure elucidation are outlined. Biological mechanisms underlying the health benefits of AOS and their potential industrial and therapeutic applications are elaborated. Withal, various challenges in AOS research are traced out, and future directions, specifically on recombinant systems for AOS preparation, are delineated to further widen the horizon of these exceptional oligosaccharides.
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Affiliation(s)
- Ushasree Mrudulakumari Vasudevan
- Department of Chemical Engineering (Integrated Engineering), Kyung Hee University, Yongin-si, Gyeonggi-do 17104, Republic of Korea
| | - Ok Kyung Lee
- Department of Chemical Engineering (Integrated Engineering), Kyung Hee University, Yongin-si, Gyeonggi-do 17104, Republic of Korea
| | - Eun Yeol Lee
- Department of Chemical Engineering (Integrated Engineering), Kyung Hee University, Yongin-si, Gyeonggi-do 17104, Republic of Korea.
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Bacterial Biopolymer: Its Role in Pathogenesis to Effective Biomaterials. Polymers (Basel) 2021; 13:polym13081242. [PMID: 33921239 PMCID: PMC8069653 DOI: 10.3390/polym13081242] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 03/12/2021] [Accepted: 03/16/2021] [Indexed: 12/17/2022] Open
Abstract
Bacteria are considered as the major cell factories, which can effectively convert nitrogen and carbon sources to a wide variety of extracellular and intracellular biopolymers like polyamides, polysaccharides, polyphosphates, polyesters, proteinaceous compounds, and extracellular DNA. Bacterial biopolymers find applications in pathogenicity, and their diverse materialistic and chemical properties make them suitable to be used in medicinal industries. When these biopolymer compounds are obtained from pathogenic bacteria, they serve as important virulence factors, but when they are produced by non-pathogenic bacteria, they act as food components or biomaterials. There have been interdisciplinary studies going on to focus on the molecular mechanism of synthesis of bacterial biopolymers and identification of new targets for antimicrobial drugs, utilizing synthetic biology for designing and production of innovative biomaterials. This review sheds light on the mechanism of synthesis of bacterial biopolymers and its necessary modifications to be used as cell based micro-factories for the production of tailor-made biomaterials for high-end applications and their role in pathogenesis.
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Li HL, Deng RX, Wang W, Liu KQ, Hu HB, Huang XQ, Zhang XH. Biosynthesis and Characterization of Medium-Chain-Length Polyhydroxyalkanoate with an Enriched 3-Hydroxydodecanoate Monomer from a Pseudomonas chlororaphis Cell Factory. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:3895-3903. [PMID: 33759523 DOI: 10.1021/acs.jafc.1c00500] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Polyhydroxyalkanoates (PHAs) have been reported with agricultural and medical applications in virtue of their biodegradable and biocompatible properties. Here, we systematically engineered three modules for the enhanced biosynthesis of medium-chain-length polyhydroxyalkanoate (mcl-PHA) in Pseudomonas chlororaphis HT66. The phzE, fadA, and fadB genes were deleted to block the native phenazine pathway and weaken the fatty acid β-oxidation pathway. Additionally, a PHA depolymerase gene phaZ was knocked out to prevent the degradation of mcl-PHA. Three genes involved in the mcl-PHA biosynthesis pathway were co-overexpressed to increase carbon flux. The engineered strain HT4Δ::C1C2J exhibited an 18.2 g/L cell dry weight with 84.9 wt % of mcl-PHA in a shake-flask culture, and the 3-hydroxydodecanoate (3HDD) monomer was increased to 71.6 mol %. Thermophysical and mechanical properties of mcl-PHA were improved with an enriched ratio of 3HDD. This study demonstrated a rational metabolic engineering approach to enhance the production of mcl-PHA with the enriched dominant monomer and improved material properties.
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Affiliation(s)
- Hui-Ling Li
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ru-Xiang Deng
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Wei Wang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Kai-Quan Liu
- State Key Laboratory of Biobased Material and Green Papermaking (LBMP), Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong 250353, China
- Key Laboratory of Shandong Microbial Engineering, College of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong 250353, China
| | - Hong-Bo Hu
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
- National Experimental Teaching Center for Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xian-Qing Huang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xue-Hong Zhang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
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Kumar V, Darnal S, Kumar S, Kumar S, Singh D. Bioprocess for co-production of polyhydroxybutyrate and violacein using Himalayan bacterium Iodobacter sp. PCH194. BIORESOURCE TECHNOLOGY 2021; 319:124235. [PMID: 33254459 DOI: 10.1016/j.biortech.2020.124235] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 10/02/2020] [Accepted: 10/03/2020] [Indexed: 06/12/2023]
Abstract
The co-production of industrially relevant biopolymers/biomolecules from microbes is of biotechnological importance. Herein, a unique bacterium, Iodobacter sp. PCH 194 from the kettle lake at Sach Pass in western Indian Himalaya was identified. It co-produces biopolymer polyhydroxyalkanoates (PHA) and biomolecule (violacein pigment). Statistical optimization yielded dual products in the medium augmented with glucose (4.0% w/v) and tryptone (0.5% w/v) as carbon and nitrogen sources, respectively. The purified PHA was polyhydroxybutyrate (PHB), and pigment constitutes of violacein (50-60%) and deoxyviolacein (40-50%). A bench-scale bioprocess in 22.0 L fermentor with 20% dissolved O2 supply produced PHB (11.0 ± 1.0 g/L, 58% of dry cell mass) and violacein pigment (1.5 ± 0.08 g/L). PHB obtained was used for the preparation of bioplastic film. Violacein pigment experimentally validated for anticancerous and antimicrobial activities. In summary, a commercially implied bioprocess developed for the co-production of PHB and violacein pigment using the Himalayan bacterium.
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Affiliation(s)
- Vijay Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India
| | - Sanyukta Darnal
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India; Academy of Scientific & Innovative Research (AcSIR), CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India
| | - Subhash Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India; Academy of Scientific & Innovative Research (AcSIR), CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India
| | - Sanjay Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India
| | - Dharam Singh
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India; Academy of Scientific & Innovative Research (AcSIR), CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh 176 061, India.
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12
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Fan X, Zhang Y, Zhao F, Liu Y, Zhao Y, Wang S, Liu R, Yang C. Genome reduction enhances production of polyhydroxyalkanoate and alginate oligosaccharide in Pseudomonas mendocina. Int J Biol Macromol 2020; 163:2023-2031. [DOI: 10.1016/j.ijbiomac.2020.09.067] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 08/11/2020] [Accepted: 09/10/2020] [Indexed: 12/15/2022]
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13
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Wang S, Cui J, Bilal M, Hu H, Wang W, Zhang X. Pseudomonas spp. as cell factories (MCFs) for value-added products: from rational design to industrial applications. Crit Rev Biotechnol 2020; 40:1232-1249. [PMID: 32907412 DOI: 10.1080/07388551.2020.1809990] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
In recent years, there has been increasing interest in microbial biotechnology for the production of value-added compounds from renewable resources. Pseudomonas species have been proposed as a suitable workhorse for high-value secondary metabolite production because of their unique characteristics for fast growth on sustainable carbon sources, a clear inherited background, versatile intrinsic metabolism with diverse enzymatic capacities, and their robustness in an extreme environment. It has also been demonstrated that metabolically engineered Pseudomonas strains can produce several industrially valuable aromatic chemicals and natural products such as phenazines, polyhydroxyalkanoates, rhamnolipids, and insecticidal proteins from renewable feedstocks with remarkably high yields suitable for commercial application. In this review, we summarize cell factory construction in Pseudomonas for the biosynthesis of native and non-native bioactive compounds in P. putida, P. chlororaphis, P. aeruginosa, as well as pharmaceutical proteins production by P. fluorescens. Additionally, some novel strategies together with metabolic engineering strategies in order to improve the biosynthetic abilities of Pseudomonas as an ideal chassis are discussed. Finally, we proposed emerging opportunities, challenges, and essential strategies to enable the successful development of Pseudomonas as versatile microbial cell factories for the bioproduction of diverse bioactive compounds.
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Affiliation(s)
- Songwei Wang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Jiajia Cui
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Muhammad Bilal
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, China
| | - Hongbo Hu
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Wei Wang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Xuehong Zhang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
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14
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Zhang C, Wang W, Zhao X, Wang H, Yin H. Preparation of alginate oligosaccharides and their biological activities in plants: A review. Carbohydr Res 2020; 494:108056. [PMID: 32559511 DOI: 10.1016/j.carres.2020.108056] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Revised: 05/31/2020] [Accepted: 05/31/2020] [Indexed: 12/11/2022]
Abstract
Alginate oligosaccharide (AOS) is the degradation product of alginates extracted from brown algae. As a multifunctional oligomer, it has attracted widespread attention in plant research. Different methods of preparation generate AOS possessing diverse structural properties, and result in differences in AOS activity. In this review, the methods of preparation and characterization of AOS are briefly summarized, followed by a systematic introduction to the activity and mechanisms of AOS in plants. AOS can act as a growth promoter at different growth stages of plants. AOS also enhances resistance to pathogens, drought, salt, heavy metals and other stressors by triggering plant immunity, exerting bioactivity just like a pathogen-associated molecular pattern. In addition, AOS can regulate ABA biosynthesis and metabolite to preserve fruit quality and enhance shelf life. This review provides a comprehensive summary of the biological activity of AOS in plants, which will support research and the application of AOS treatments for plants in the future.
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Affiliation(s)
- Chunguang Zhang
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China; Dalian Engineering Research Center for Carbohydrate Agricultural Preparations, Liaoning Provincial Key Laboratory of Carbohydrates, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Wenxia Wang
- Dalian Engineering Research Center for Carbohydrate Agricultural Preparations, Liaoning Provincial Key Laboratory of Carbohydrates, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Xiaoming Zhao
- Dalian Engineering Research Center for Carbohydrate Agricultural Preparations, Liaoning Provincial Key Laboratory of Carbohydrates, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Hongying Wang
- School of Biological Engineering, Dalian Polytechnic University, Dalian, 116034, China.
| | - Heng Yin
- Dalian Engineering Research Center for Carbohydrate Agricultural Preparations, Liaoning Provincial Key Laboratory of Carbohydrates, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
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Dvořák P, Kováč J, de Lorenzo V. Biotransformation of d-xylose to d-xylonate coupled to medium-chain-length polyhydroxyalkanoate production in cellobiose-grown Pseudomonas putida EM42. Microb Biotechnol 2020; 13:1273-1283. [PMID: 32363744 PMCID: PMC7264884 DOI: 10.1111/1751-7915.13574] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 03/05/2020] [Accepted: 03/25/2020] [Indexed: 12/23/2022] Open
Abstract
Co-production of two or more desirable compounds from low-cost substrates by a single microbial catalyst could greatly improve the economic competitiveness of many biotechnological processes. However, reports demonstrating the adoption of such co-production strategy are still scarce. In this study, the ability of genome-edited strain Pseudomonas putida EM42 to simultaneously valorize d-xylose and d-cellobiose - two important lignocellulosic carbohydrates - by converting them into the platform chemical d-xylonate and medium-chain-length polyhydroxyalkanoates, respectively, was investigated. Biotransformation experiments performed with P. putida resting cells showed that promiscuous periplasmic glucose oxidation route can efficiently generate extracellular xylonate with a high yield. Xylose oxidation was subsequently coupled to the growth of P. putida with cytoplasmic β-glucosidase BglC from Thermobifida fusca on d-cellobiose. This disaccharide turned out to be a better co-substrate for xylose-to-xylonate biotransformation than monomeric glucose. This was because unlike glucose, cellobiose did not block oxidation of the pentose by periplasmic glucose dehydrogenase Gcd, but, similarly to glucose, it was a suitable substrate for polyhydroxyalkanoate formation in P. putida. Co-production of extracellular xylose-born xylonate and intracellular cellobiose-born medium-chain-length polyhydroxyalkanoates was established in proof-of-concept experiments with P. putida grown on the disaccharide. This study highlights the potential of P. putida EM42 as a microbial platform for the production of xylonate, identifies cellobiose as a new substrate for mcl-PHA production, and proposes a fresh strategy for the simultaneous valorization of xylose and cellobiose.
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Affiliation(s)
- Pavel Dvořák
- Department of Experimental Biology (Section of Microbiology)Faculty of ScienceMasaryk UniversityKamenice 753/562500BrnoCzech Republic
| | - Jozef Kováč
- Department of Experimental Biology (Section of Microbiology)Faculty of ScienceMasaryk UniversityKamenice 753/562500BrnoCzech Republic
| | - Víctor de Lorenzo
- Systems and Synthetic Biology ProgramCentro Nacional de Biotecnología CNB‐CSICCantoblancoDarwin 328049MadridSpain
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de Meneses L, Pereira JR, Sevrin C, Grandfils C, Paiva A, Reis MA, Freitas F. Pseudomonas chlororaphis as a multiproduct platform: Conversion of glycerol into high-value biopolymers and phenazines. N Biotechnol 2020; 55:84-90. [DOI: 10.1016/j.nbt.2019.10.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2019] [Revised: 10/03/2019] [Accepted: 10/03/2019] [Indexed: 11/25/2022]
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Xing M, Cao Q, Wang Y, Xiao H, Zhao J, Zhang Q, Ji A, Song S. Advances in Research on the Bioactivity of Alginate Oligosaccharides. Mar Drugs 2020; 18:E144. [PMID: 32121067 PMCID: PMC7142810 DOI: 10.3390/md18030144] [Citation(s) in RCA: 102] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 02/22/2020] [Accepted: 02/25/2020] [Indexed: 12/12/2022] Open
Abstract
Alginate is a natural polysaccharide present in various marine brown seaweeds. Alginate oligosaccharide (AOS) is a degradation product of alginate, which has received increasing attention due to its low molecular weight and promising biological activity. The wide-ranging biological activity of AOS is closely related to the diversity of their structures. AOS with a specific structure and distinct applications can be obtained by different methods of alginate degradation. This review focuses on recent advances in the biological activity of alginate and its derivatives, including their anti-tumor, anti-oxidative, immunoregulatory, anti-inflammatory, neuroprotective, antibacterial, hypolipidemic, antihypertensive, and hypoglycemic properties, as well as the ability to suppress obesity and promote cell proliferation and regulate plant growth. We hope that this review will provide theoretical basis and inspiration for the high-value research developments and utilization of AOS-related products.
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Affiliation(s)
- Maochen Xing
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Qi Cao
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Yu Wang
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Han Xiao
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Jiarui Zhao
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Qing Zhang
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
| | - Aiguo Ji
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
- School of Pharmaceutical Sciences, Shandong University, Jinan 250012, China
| | - Shuliang Song
- Marine College, Shandong University, Weihai 264209, China; (M.X.); (Q.C.); (Y.W.); (H.X.); (J.Z.); (Q.Z.); (A.J.)
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Production of Polyhydroxyalkanoates and Extracellular Products Using Pseudomonas Corrugata and P. Mediterranea: A Review. Bioengineering (Basel) 2019; 6:bioengineering6040105. [PMID: 31739507 PMCID: PMC6955742 DOI: 10.3390/bioengineering6040105] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 11/10/2019] [Accepted: 11/12/2019] [Indexed: 11/16/2022] Open
Abstract
Some strains of Pseudomonas corrugata (Pco) and P. mediterranea (Pme) efficiently synthesize medium-chain-length polyhydroxyalkanoates elastomers (mcl-PHA) and extracellular products on related and unrelated carbon sources. Yield and composition are dependent on the strain, carbon source, fermentation process, and any additives. Selected Pco strains produce amorphous and sticky mcl-PHA, whereas strains of Pme produce, on high grade and partially refined biodiesel glycerol, a distinctive filmable PHA, very different from the conventional microbial mcl-PHA, suitable for making blends with polylactide acid. However, the yields still need to be improved and production costs lowered. An integrated process has been developed to recover intracellular mcl-PHA and extracellular bioactive molecules. Transcriptional regulation studies during PHA production contribute to understanding the metabolic potential of Pco and Pme strains. Data available suggest that pha biosynthesis genes and their regulations will be helpful to develop new, integrated strategies for cost-effective production.
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Zhao F, He F, Liu X, Shi J, Liang J, Wang S, Yang C, Liu R. Metabolic engineering of Pseudomonas mendocina NK-01 for enhanced production of medium-chain-length polyhydroxyalkanoates with enriched content of the dominant monomer. Int J Biol Macromol 2019; 154:1596-1605. [PMID: 31706817 DOI: 10.1016/j.ijbiomac.2019.11.044] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 11/02/2019] [Accepted: 11/06/2019] [Indexed: 10/25/2022]
Abstract
In this study, six genes involved in β-oxidation pathway of P. mendocina NK-01 were deleted to construct mutant strains NKU-∆β1 and NKU-∆β5. Compared with the wild strain NKU, the mcl-PHA titers of NKU-∆β5 were respectively increased by 5.58- and 4.85-fold for culturing with sodium octanoate and sodium decanoate. And the mcl-PHA titers of NKU-∆β1 was increased by 10.02-fold for culturing with dodecanoic acid. The contents of dominant monomers 3-hydroxydecanoate (3HD) and 3-hydroxydodecanoate (3HDD) of the mcl-PHA synthesized by NKU-∆β5 were obviously increased to 90.01 and 58.60 mol%, respectively. Further deletion of genes phaG and phaZ, the 3HD and 3HDD contents were further improved to 94.71 and 68.67 mol%, respectively. The highest molecular weight of mcl-PHA obtained in this study was 80.79 × 104 Da, which was higher than the previously reported mcl-PHA. With the increase of dominant monomer contents, the synthesized mcl-PHA showed better thermal properties, mechanical properties and crystallization properties. Interestingly, the cell size of NKU-∆β5 was larger than that of NKU due to the accumulation of more PHA granules. This study indicated that a systematically metabolic engineering approach for P. mendocina NK-01 could significantly improve the mcl-PHA titer, dominant monomer contents and physical properties of mcl-PHA.
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Affiliation(s)
- Fengjie Zhao
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin 300071, China
| | - Fanyang He
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin 300071, China
| | - Xiangsheng Liu
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin 300071, China
| | - Jie Shi
- State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China
| | - Jingnan Liang
- Core Facility of Equipment, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Shufang Wang
- State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China.
| | - Chao Yang
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin 300071, China.
| | - Ruihua Liu
- State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China.
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Liu J, Yang S, Li X, Yan Q, Reaney MJT, Jiang Z. Alginate Oligosaccharides: Production, Biological Activities, and Potential Applications. Compr Rev Food Sci Food Saf 2019; 18:1859-1881. [DOI: 10.1111/1541-4337.12494] [Citation(s) in RCA: 104] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 07/09/2019] [Accepted: 07/29/2019] [Indexed: 12/15/2022]
Affiliation(s)
- Jun Liu
- Beijing Advanced Innovation Center for Food Nutrition and Human HealthCollege of Food Science and Nutritional EngineeringChina Agricultural Univ. Beijing 100083 China
- Beijing Advanced Innovation Center for Food Nutrition and Human HealthBeijing Technology and Business Univ. Beijing 100048 China
| | - Shaoqing Yang
- Beijing Advanced Innovation Center for Food Nutrition and Human HealthCollege of Food Science and Nutritional EngineeringChina Agricultural Univ. Beijing 100083 China
| | - Xiuting Li
- Beijing Advanced Innovation Center for Food Nutrition and Human HealthBeijing Technology and Business Univ. Beijing 100048 China
| | - Qiaojuan Yan
- Bioresource Utilization LaboratoryCollege of EngineeringChina Agricultural Univ. Beijing 100083 China
| | - Martin J. T. Reaney
- Dept. of Plant SciencesUniv. of Saskatchewan Saskatoon SK S7N 5A8 Canada
- Guangdong Saskatchewan Oilseed Joint Laboratory (GUSTO)Dept. of Food Science and EngineeringJinan Univ. Guangzhou 510632 China
| | - Zhengqiang Jiang
- Beijing Advanced Innovation Center for Food Nutrition and Human HealthCollege of Food Science and Nutritional EngineeringChina Agricultural Univ. Beijing 100083 China
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21
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Enhanced synthesis of alginate oligosaccharides in Pseudomonas mendocina NK-01 by overexpressing MreB. 3 Biotech 2019; 9:344. [PMID: 31497462 DOI: 10.1007/s13205-019-1873-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 08/13/2019] [Indexed: 10/26/2022] Open
Abstract
This study aimed to investigate the effects of cytoskeleton protein MreB on bacterial cell morphology and the synthesis of alginate oligosaccharides (AO) and polyhydroxyalkanoate (PHA) by Pseudomonas mendocina NK-01. To overexpress the mreB gene, an expression vector encoding MreB-GFP fusion protein was constructed. The scanning electron microscope (SEM) showed that cells expressing MreB were longer than the wild ones, which agrees with MreB's relationship with the synthesis of peptidoglycan. Cells expressing the MreB-GFP fusion protein emitted green fluorescence under a fluorescence microscope, suggesting that MreB was functionally expressed in strain NK-01. Under a confocal laser scanning microscope, MreB was observed as located around the cell membrane. Furthermore, the recombinant strain could synthesize 0.961 g/L AO, which was 5.86-fold higher than wild-type strain. Through the medium optimization test, we finally selected the addition of 20 g/L glucose as the optimal glycogen addition for AO fermentation based on a high AO yield and high substrate transformation efficiency. The results indicated that overexpression of MreB affected the cell morphology, the activity of AO polymerase, and the efficiency of AO secretion. However, the synthesis of PHA for recombinant strain was slightly reduced. The results suggested that the overexpression of this cytoskeleton protein affected the yield of specific intracellular and extracellular products.
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22
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Kourmentza C, Araujo D, Sevrin C, Roma-Rodriques C, Lia Ferreira J, Freitas F, Dionisio M, Baptista PV, Fernandes AR, Grandfils C, Reis MAM. Occurrence of non-toxic bioemulsifiers during polyhydroxyalkanoate production by Pseudomonas strains valorizing crude glycerol by-product. BIORESOURCE TECHNOLOGY 2019; 281:31-40. [PMID: 30798087 DOI: 10.1016/j.biortech.2019.02.066] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2019] [Revised: 02/12/2019] [Accepted: 02/13/2019] [Indexed: 05/26/2023]
Abstract
While screening for polyhydroxyalkanoate (PHA) producing strains, using glycerol rich by-product as carbon source, it was observed that extracellular polymers were also secreted into the culture broth. The scope of this study was to characterize both intracellular and extracellular polymers, produced by Pseudomonas putida NRRL B-14875 and Pseudomonas chlororaphis DSM 50083, mostly focusing on those novel extracellular polymers. It was found that they fall into the class of bioemulsifiers (BE), as they showed excellent emulsion stability against different hydrocarbons/oils at various pH conditions, temperature and salinity concentrations. Cytotoxicity tests revealed that BE produced by P. chlororaphis inhibited the growth of highly pigmented human melanoma cells (MNT-1) by 50% at concentrations between 150 and 200 μg/mL, while no effect was observed on normal skin primary keratinocytes and melanocytes. This is the first study reporting mcl-PHA production by P. putida NRRL B-14785 and bioemulsifier production from both P. putida and P. chlororaphis strains.
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Affiliation(s)
- Constantina Kourmentza
- Food & Bioprocessing Sciences (FaBS), Department of Food and Nutritional Sciences, School of Chemistry, Food and Pharmacy, University of Reading, RG6 6AP Reading, UK; UCIBIO, Department of Chemistry, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal.
| | - Diana Araujo
- UCIBIO, Department of Chemistry, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Chantal Sevrin
- Interfaculty Research Centre of Biomaterials (CEIB), University of Liège, B-4000 Liège, Belgium
| | - Catarina Roma-Rodriques
- UCIBIO, Department of Life Sciences, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Joana Lia Ferreira
- LAQV-REQUIMTE, Department of Conservation and Restoration, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Filomena Freitas
- UCIBIO, Department of Chemistry, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Madalena Dionisio
- UCIBIO, Department of Chemistry, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Pedro V Baptista
- UCIBIO, Department of Life Sciences, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Alexandra R Fernandes
- UCIBIO, Department of Life Sciences, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - Christian Grandfils
- Interfaculty Research Centre of Biomaterials (CEIB), University of Liège, B-4000 Liège, Belgium
| | - Maria A M Reis
- UCIBIO, Department of Chemistry, Faculty of Science and Technology, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
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Zhao F, Liu X, Kong A, Zhao Y, Fan X, Ma T, Gao W, Wang S, Yang C. Screening of endogenous strong promoters for enhanced production of medium-chain-length polyhydroxyalkanoates in Pseudomonas mendocina NK-01. Sci Rep 2019; 9:1798. [PMID: 30755729 PMCID: PMC6372614 DOI: 10.1038/s41598-019-39321-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Accepted: 01/21/2019] [Indexed: 01/02/2023] Open
Abstract
Polyhydroxyalkanoate (PHA) can be produced by microorganisms from renewable resources and is regarded as a promising bioplastic to replace petroleum-based plastics. Pseudomonas mendocina NK-01 is a medium-chain-length PHA (mcl-PHA)-producing strain and its whole-genome sequence is currently available. The yield of mcl-PHA in P. mendocina NK-01 is expected to be improved by applying a promoter engineering strategy. However, a limited number of well-characterized promoters has greatly restricted the application of promoter engineering for increasing the yield of mcl-PHA in P. mendocina NK-01. In this work, 10 endogenous promoters from P. mendocina NK-01 were identified based on RNA-seq and promoter prediction results. Subsequently, 10 putative promoters were characterized for their strength through the expression of a reporter gene gfp. As a result, five strong promoters designated as P4, P6, P9, P16 and P25 were identified based on transcriptional level and GFP fluorescence intensity measurements. To evaluate whether the screened promoters can be used to enhance transcription of PHA synthase gene (phaC), the three promoters P4, P6 and P16 were separately integrated into upstream of the phaC operon in the genome of P. mendocina NK-01, resulting in the recombinant strains NKU-4C1, NKU-6C1 and NKU-16C1. As expected, the transcriptional levels of phaC1 and phaC2 in the recombinant strains were increased as shown by real-time quantitative RT-PCR. The phaZ gene encoding PHA depolymerase was further deleted to construct the recombinant strains NKU-∆phaZ-4C1, NKU-∆phaZ-6C1 and NKU-∆phaZ-16C1. The results from shake-flask fermentation indicated that the mcl-PHA titer of recombinant strain NKU-∆phaZ-16C1 was increased from 17 to 23 wt% compared with strain NKU-∆phaZ. This work provides a feasible method to discover strong promoters in P. mendocina NK-01 and highlights the potential of the screened endogenous strong promoters for metabolic engineering of P. mendocina NK-01 to increase the yield of mcl-PHA.
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Affiliation(s)
- Fengjie Zhao
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Xiangsheng Liu
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Annie Kong
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Yuxin Zhao
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Xu Fan
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Ting Ma
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China
| | - Weixia Gao
- State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin, 300071, China.
| | - Shufang Wang
- State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin, 300071, China.
| | - Chao Yang
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education, Nankai University, Tianjin, 300071, China.
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Zhao F, Gong T, Liu X, Fan X, Huang R, Ma T, Wang S, Gao W, Yang C. Morphology engineering for enhanced production of medium-chain-length polyhydroxyalkanoates in Pseudomonas mendocina NK-01. Appl Microbiol Biotechnol 2019; 103:1713-1724. [DOI: 10.1007/s00253-018-9546-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2018] [Revised: 11/23/2018] [Accepted: 11/27/2018] [Indexed: 10/27/2022]
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25
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Kumar P, Kim BS. Valorization of polyhydroxyalkanoates production process by co-synthesis of value-added products. BIORESOURCE TECHNOLOGY 2018; 269:544-556. [PMID: 30201320 DOI: 10.1016/j.biortech.2018.08.120] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 08/28/2018] [Accepted: 08/29/2018] [Indexed: 06/08/2023]
Abstract
Polyhydroxyalkanoates (PHAs) are the only polyesters that are completely synthesized biologically and possess features equivalent to petroleum-based plastics besides being biodegradable. PHA based materials may certainly prove helpful in addressing the concerns caused due to the indiscriminate use of synthetic plastics. However, the cost of producing these polymers on a large scale is still uneconomical. Various approaches have been developed to tackle this issue through usage of agro-industrial wastes, co-production of high market value products, polymer extraction using green solvents, etc. The advent of recombineering and CRISPR technologies has broadened the scope of constructing a microbe capable of synthesizing multiple products with economic feasibility. Quite a few high-market value chemicals are possible to synthesize along with the favorable accumulation of PHA. The present article attempts to review all PHA polymer co-production processes with other chemicals reported till date and discusses the opportunities for their large-scale operation in future.
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Affiliation(s)
- Prasun Kumar
- Department of Chemical Engineering, Chungbuk National University, Cheongju, Chungbuk 28644, Republic of Korea
| | - Beom Soo Kim
- Department of Chemical Engineering, Chungbuk National University, Cheongju, Chungbuk 28644, Republic of Korea.
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Urtuvia V, Maturana N, Acevedo F, Peña C, Díaz-Barrera A. Bacterial alginate production: an overview of its biosynthesis and potential industrial production. World J Microbiol Biotechnol 2017; 33:198. [DOI: 10.1007/s11274-017-2363-x] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Accepted: 10/01/2017] [Indexed: 10/18/2022]
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Basnett P, Lukasiewicz B, Marcello E, Gura HK, Knowles JC, Roy I. Production of a novel medium chain length poly(3-hydroxyalkanoate) using unprocessed biodiesel waste and its evaluation as a tissue engineering scaffold. Microb Biotechnol 2017; 10:1384-1399. [PMID: 28905518 PMCID: PMC5658593 DOI: 10.1111/1751-7915.12782] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Revised: 06/18/2017] [Accepted: 06/24/2017] [Indexed: 01/10/2023] Open
Abstract
This study demonstrated the utilization of unprocessed biodiesel waste as a carbon feedstock for Pseudomonas mendocinaCH50, for the production of PHAs. A PHA yield of 39.5% CDM was obtained using 5% (v/v) biodiesel waste substrate. Chemical analysis confirmed that the polymer produced was poly(3‐hydroxyhexanoate‐co‐3‐hydroxyoctanoate‐co‐3‐hydroxydecanoate‐co‐3‐hydroxydodecanoate) or P(3HHx‐3HO‐3HD‐3HDD). P(3HHx‐3HO‐3HD‐3HDD) was further characterized and evaluated for its use as a tissue engineering scaffold (TES). This study demonstrated that P(3HHx‐3HO‐3HD‐3HDD) was biocompatible with the C2C12 (myoblast) cell line. In fact, the % cell proliferation of C2C12 on the P(3HHx‐3HO‐3HD‐3HDD) scaffold was 72% higher than the standard tissue culture plastic confirming that this novel PHA was indeed a promising new material for soft tissue engineering.
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Affiliation(s)
- Pooja Basnett
- Faculty of Science and Technology, University of Westminster, London, UK
| | | | - Elena Marcello
- Faculty of Science and Technology, University of Westminster, London, UK
| | | | - Jonathan C Knowles
- Eastman Dental Institute, University College London, London, UK.,Department of Nanobiomedical Science & BK21 Plus NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan 330-714, Republic of Korea
| | - Ipsita Roy
- Faculty of Science and Technology, University of Westminster, London, UK
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Li T, Elhadi D, Chen GQ. Co-production of microbial polyhydroxyalkanoates with other chemicals. Metab Eng 2017; 43:29-36. [DOI: 10.1016/j.ymben.2017.07.007] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 07/16/2017] [Accepted: 07/26/2017] [Indexed: 01/23/2023]
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29
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Sathiyanarayanan G, Bhatia SK, Song HS, Jeon JM, Kim J, Lee YK, Kim YG, Yang YH. Production and characterization of medium-chain-length polyhydroxyalkanoate copolymer from Arctic psychrotrophic bacterium Pseudomonas sp. PAMC 28620. Int J Biol Macromol 2017; 97:710-720. [DOI: 10.1016/j.ijbiomac.2017.01.053] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 01/09/2017] [Accepted: 01/11/2017] [Indexed: 02/03/2023]
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30
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Pagliano G, Ventorino V, Panico A, Pepe O. Integrated systems for biopolymers and bioenergy production from organic waste and by-products: a review of microbial processes. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:113. [PMID: 28469708 PMCID: PMC5414342 DOI: 10.1186/s13068-017-0802-4] [Citation(s) in RCA: 62] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2017] [Accepted: 04/23/2017] [Indexed: 05/07/2023]
Abstract
Recently, issues concerning the sustainable and harmless disposal of organic solid waste have generated interest in microbial biotechnologies aimed at converting waste materials into bioenergy and biomaterials, thus contributing to a reduction in economic dependence on fossil fuels. To valorize biomass, waste materials derived from agriculture, food processing factories, and municipal organic waste can be used to produce biopolymers, such as biohydrogen and biogas, through different microbial processes. In fact, different bacterial strains can synthesize biopolymers to convert waste materials into valuable intracellular (e.g., polyhydroxyalkanoates) and extracellular (e.g., exopolysaccharides) bioproducts, which are useful for biochemical production. In particular, large numbers of bacteria, including Alcaligenes eutrophus, Alcaligenes latus, Azotobacter vinelandii, Azotobacter chroococcum, Azotobacter beijerincki, methylotrophs, Pseudomonas spp., Bacillus spp., Rhizobium spp., Nocardia spp., and recombinant Escherichia coli, have been successfully used to produce polyhydroxyalkanoates on an industrial scale from different types of organic by-products. Therefore, the development of high-performance microbial strains and the use of by-products and waste as substrates could reasonably make the production costs of biodegradable polymers comparable to those required by petrochemical-derived plastics and promote their use. Many studies have reported use of the same organic substrates as alternative energy sources to produce biogas and biohydrogen through anaerobic digestion as well as dark and photofermentation processes under anaerobic conditions. Therefore, concurrently obtaining bioenergy and biopolymers at a reasonable cost through an integrated system is becoming feasible using by-products and waste as organic carbon sources. An overview of the suitable substrates and microbial strains used in low-cost polyhydroxyalkanoates for biohydrogen and biogas production is given. The possibility of creating a unique integrated system is discussed because it represents a new approach for simultaneously producing energy and biopolymers for the plastic industry using by-products and waste as organic carbon sources.
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Affiliation(s)
- Giorgia Pagliano
- Division of Microbiology, Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, Portici, 80055 Naples, Italy
| | - Valeria Ventorino
- Division of Microbiology, Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, Portici, 80055 Naples, Italy
| | | | - Olimpia Pepe
- Division of Microbiology, Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, Portici, 80055 Naples, Italy
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Cui YW, Shi YP, Gong XY. Effects of C/N in the substrate on the simultaneous production of polyhydroxyalkanoates and extracellular polymeric substances by Haloferax mediterranei via kinetic model analysis. RSC Adv 2017. [DOI: 10.1039/c7ra02131c] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A study of the effect of extracellular carbon source distribution on polyhydroxyalkanoates and extracellular polymeric substances byHaloferax mediterranei viakinetic model analysis.
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Affiliation(s)
- You-Wei Cui
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology
- Beijing University of Technology
- Beijing 100124
- China
| | - Yun-Peng Shi
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology
- Beijing University of Technology
- Beijing 100124
- China
| | - Xiao-Yu Gong
- National Engineering Laboratory for Advanced Municipal Wastewater Treatment and Reuse Technology
- Beijing University of Technology
- Beijing 100124
- China
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Zhang J, Hou H, Chen G, Wang S, Zhang J. The isolation and functional identification on producing cellulase of Pseudomonas mendocina. Bioengineered 2016; 7:382-391. [PMID: 27710430 DOI: 10.1080/21655979.2016.1227143] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
The straw can be degraded efficiently into humus by powerful enzymes from microorganisms, resulting in the accelerated circulation of N,P,K and other effective elements in ecological system. We isolated a strain through screening the straw degradation strains from natural humic straw in the low temperature area in northeast of china, which can produce cellulase efficiently. The strain was identified as Pseudomonas mendocina by using morphological, physiological, biochemical test, and molecular biological test, with the functional clarification on producing cellulase for Pseudomonas mendocina for the first time. The enzyme force constant Km and the maximum reaction rate (Vmax) of the strain were 0.3261 g/L and 0.1525 mg/(min.L) through the enzyme activity detection, and the molecular weight of the enzyme produced by the strain were 42.4 kD and 20.4 kD based on SDS-PAGE. The effects of various ecological factors such as temperature, pH and nematodes on the enzyme produced by the strain in the micro ecosystem in plant roots were evaluated. The result showed that the optimum temperature was 28°C, and the best pH was 7.4∼7.8, the impact heavy metal was Pb2+ and the enzyme activity and biomass of Pseudomonas mendocina increased the movement and predation of nematodes.
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Affiliation(s)
- Jianfeng Zhang
- a Bioengineering Department, School of Life Sciences , Jilin Agricultural University, Jilin Province Innovation Platform of Straw Comprehensive Utilization Technology , Changchun , P. R. China
| | - Hongyan Hou
- a Bioengineering Department, School of Life Sciences , Jilin Agricultural University, Jilin Province Innovation Platform of Straw Comprehensive Utilization Technology , Changchun , P. R. China
| | - Guang Chen
- a Bioengineering Department, School of Life Sciences , Jilin Agricultural University, Jilin Province Innovation Platform of Straw Comprehensive Utilization Technology , Changchun , P. R. China
| | - Shusheng Wang
- a Bioengineering Department, School of Life Sciences , Jilin Agricultural University, Jilin Province Innovation Platform of Straw Comprehensive Utilization Technology , Changchun , P. R. China
| | - Jiejing Zhang
- a Bioengineering Department, School of Life Sciences , Jilin Agricultural University, Jilin Province Innovation Platform of Straw Comprehensive Utilization Technology , Changchun , P. R. China
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Licciardello G, Ferraro R, Russo M, Strozzi F, Catara AF, Bella P, Catara V. Transcriptome analysis of Pseudomonas mediterranea and P. corrugata plant pathogens during accumulation of medium-chain-length PHAs by glycerol bioconversion. N Biotechnol 2016; 37:39-47. [PMID: 27445200 DOI: 10.1016/j.nbt.2016.07.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 06/11/2016] [Accepted: 07/16/2016] [Indexed: 11/30/2022]
Abstract
Pseudomonas corrugata and P. mediterranea are soil inhabitant bacteria, generally living as endophytes on symptomless plants and bare soil, but also capable of causing plant diseases. They share a similar genome size and a high proteome similarity. P. corrugata produces many biomolecules which play an important role in bacterial cell survival and fitness. Both species produce different medium-chain-length PHAs (mcl-PHAs) from the bioconversion of glycerol to a transparent film in P. mediterranea and a sticky elastomer in P. corrugata. In this work, using RNA-seq we investigated the transcriptional profiles of both bacteria at the early stationary growth phase with glycerol as the carbon source. Quantitative analysis of P. mediterranea transcripts versus P. corrugata revealed that 1756 genes were differentially expressed. A total of 175 genes were significantly upregulated in P. mediterranea, while 217 were downregulated. The largest group of upregulated genes was related to transport systems and stress response, energy and central metabolism, and carbon metabolism. Expression levels of most genes coding for enzymes related to PHA biosynthesis and central metabolic pathways showed no differences or only slight variations in pyruvate metabolism. The most relevant result was the significantly increased expression in P. mediterranea of genes involved in alginate production, an important exopolysaccharide, which in other Pseudomonas spp. plays a key role as a virulence factor or in stress tolerance and shows many industrial applications. In conclusion, the results provide useful information on the co-production of mcl-PHAs and alginate from glycerol as carbon source by P. mediterranea in the design of new strategies of genetic regulation to improve the yield of bioproducts or bacterial fitness.
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Affiliation(s)
- Grazia Licciardello
- Parco Scientifico e Tecnologico della Sicilia s.c.p.a. Via V. Lancia 57, 95121 Catania, Italy.
| | - Rosario Ferraro
- Parco Scientifico e Tecnologico della Sicilia s.c.p.a. Via V. Lancia 57, 95121 Catania, Italy
| | - Marcella Russo
- Parco Scientifico e Tecnologico della Sicilia s.c.p.a. Via V. Lancia 57, 95121 Catania, Italy
| | - Francesco Strozzi
- Parco Tecnologico Padano, via Einstein - Loc. Cascina Codazza 26900, Lodi, Italy
| | - Antonino F Catara
- Parco Scientifico e Tecnologico della Sicilia s.c.p.a. Via V. Lancia 57, 95121 Catania, Italy
| | - Patrizia Bella
- Dipartimento di Scienze Agrarie e Forestali Università degli Studi di Palermo, Viale delle Scienze, 13, 90128, Palermo, Italy
| | - Vittoria Catara
- Dipartimento di Agricoltura, Alimentazione e Ambiente, Università degli Studi di Catania, Via S. Sofia 100, 95123 Catania Italy
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Chanasit W, Hodgson B, Sudesh K, Umsakul K. Efficient production of polyhydroxyalkanoates (PHAs) from Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) as the sole carbon source. Biosci Biotechnol Biochem 2016; 80:1440-50. [DOI: 10.1080/09168451.2016.1158628] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Conditions for the optimal production of polyhydroxyalkanoate (PHA) by Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) were determined by response surface methodology. These were an initial carbon to nitrogen ratio (C/N) of 40 (mole/mole), an initial pH of 7.0, and a temperature of 35 °C. A biomass and PHA concentration of 3.65 g/L and about 2.6 g/L (77% DCW), respectively, were achieved in a growth associated process using 20 g/L glycerol in the BLW after 36 h of exponential growth. The PHA monomer compositions were 3HB (3-hydroxybutyrate), a short-chain-length-PHA, and the medium-chain-length-PHA e.g. 3-hydroxyoctanoate and 3-hydroxydecanoate. Both the phbC and phaC genes were characterized. The phbC enzyme had not been previously detected in a Pseudomonas mendocina species. A 2.15 g/L of an exopolysaccharide, alginate, was also produced with a similar composition to that of other Pseudomonas species.
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Affiliation(s)
- Wankuson Chanasit
- Faculty of Science, Department of Microbiology, Prince of Songkla University, Songkhla, Thailand
| | - Brian Hodgson
- Faculty of Pharmaceutical Sciences, Prince of Songkla University, Songkhla, Thailand
| | - Kumar Sudesh
- Ecobiomaterial Research Laboratory, School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | - Kamontam Umsakul
- Faculty of Science, Department of Microbiology, Prince of Songkla University, Songkhla, Thailand
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Wang Y, Zhao F, Fan X, Wang S, Song C. Enhancement of medium-chain-length polyhydroxyalkanoates biosynthesis from glucose by metabolic engineering in Pseudomonas mendocina. Biotechnol Lett 2015; 38:313-20. [DOI: 10.1007/s10529-015-1980-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 10/13/2015] [Indexed: 11/24/2022]
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36
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Dual production of biopolymers from bacteria. Carbohydr Polym 2015; 126:47-51. [DOI: 10.1016/j.carbpol.2015.03.001] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 09/23/2014] [Accepted: 03/01/2015] [Indexed: 11/17/2022]
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37
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Wang Y, Zhang C, Gong T, Zuo Z, Zhao F, Fan X, Yang C, Song C. An upp-based markerless gene replacement method for genome reduction and metabolic pathway engineering in Pseudomonas mendocina NK-01 and Pseudomonas putida KT2440. J Microbiol Methods 2015; 113:27-33. [DOI: 10.1016/j.mimet.2015.03.022] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2015] [Revised: 03/26/2015] [Accepted: 03/27/2015] [Indexed: 11/25/2022]
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38
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Biotechnological Production of Polyhydroxyalkanoates: A Review on Trends and Latest Developments. ACTA ACUST UNITED AC 2014. [DOI: 10.1155/2014/802984] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Polyhydroxyalkanoates (PHA) producers have been reported to reside at various ecological niches which are naturally or accidently exposed to high organic matter or growth limited conditions such as dairy wastes, hydrocarbon contaminated sites, pulp and paper mill wastes, agricultural wastes, activated sludges of treatment plants, rhizosphere, and industrial effluents. Few among them also produce extracellular by-products like rhamnolipids, extracellular polymeric substances, and biohydrogen gas. These sorts of microbes are industrially important candidates for the reason that they can use waste materials of different origin as substrate with simultaneous production of valuable bioproducts including PHA. Implementation of integrated system to separate their by-products (intracellular and extracellular) can be economical in regard to production. In this review, we have discussed various microorganisms dwelling at different environmental conditions which stimulate them to accumulate carbon as polyhydroxyalkanoates granules and factors influencing its production and composition. A brief aspect on metabolites which are produced concomitantly with PHA has also been discussed. In conclusion, exploring of capabilities like of dual production by microbes and use of wastes as renewable substrate under optimized cultural conditions either in batch or continuous process can cause deduction in present cost of bioplastic production from stored PHA granules.
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Comparative study on the production of poly(3-hydroxybutyrate) by thermophilic Chelatococcus daeguensis TAD1: a good candidate for large-scale production. Appl Microbiol Biotechnol 2014; 98:3965-74. [PMID: 24477383 DOI: 10.1007/s00253-014-5524-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2013] [Revised: 01/05/2014] [Accepted: 01/06/2014] [Indexed: 10/25/2022]
Abstract
In spite of numerous advantages on operating fermentation at elevated temperatures, very few thermophilic bacteria with polyhydroxyalkanoates (PHAs)-accumulating ability have yet been found in contrast to the tremendous mesophiles with the same ability. In this study, a thermophilic poly(3-hydroxybutyrate) (PHB)-accumulating bacteria (Chelatococcus daeguensis TAD1), isolated from the biofilm of a biotrickling filter used for NOx removal, was extensively investigated and compared to other PHB-accumulating bacteria. The results demonstrate that C. daeguensis TAD1 is a growth-associated PHB-accumulating bacterium without obvious nutrient limitation, which was capable of accumulating PHB up to 83.6 % of cell dry weight (CDW, w/w) within just 24 h at 45 °C from glucose. Surprisingly, the PHB production of C. daeguensis TAD1 exhibited strong tolerance to high heat stress as well as nitrogen loads compared to that of other PHB-accumulating bacterium, while the optimal PHB amount (3.44 ± 0.3 g l(-1)) occurred at 50 °C and C/N = 30 (molar) with glucose as the sole carbon source. In addition, C. daeguensis TAD1 could effectively utilize various cheap substrates (starch or glycerol) for PHB production without pre-hydrolyzed, particularly the glycerol, exhibiting the highest product yield (Y P/S, 0.26 g PHB per gram substrate used) as well as PHB content (80.4 % of CDW, w/w) compared to other carbon sources. Consequently, C. daeguensis TAD1 is a viable candidate for large-scale production of PHB via utilizing starch or glycerol as the raw materials.
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40
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Biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) with co-expressed propionate permease (prpP), beta-ketothiolase B (bktB), and propionate-CoA synthase (prpE) in Escherichia coli. Biochem Eng J 2013. [DOI: 10.1016/j.bej.2012.12.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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41
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Yang C, Zhang W, Liu R, Zhang C, Gong T, Li Q, Wang S, Song C. Analysis of polyhydroxyalkanoate (PHA) synthase gene and PHA-producing bacteria in activated sludge that produces PHA containing 3-hydroxydodecanoate. FEMS Microbiol Lett 2013; 346:56-64. [DOI: 10.1111/1574-6968.12201] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2013] [Accepted: 06/18/2013] [Indexed: 11/29/2022] Open
Affiliation(s)
- Chao Yang
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
| | - Wei Zhang
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
| | - Ruihua Liu
- State Key Laboratory of Medicinal Chemical Biology; Nankai University; Tianjin; China
| | - Chi Zhang
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
| | - Ting Gong
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
| | - Qiang Li
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
| | - Shufang Wang
- State Key Laboratory of Medicinal Chemical Biology; Nankai University; Tianjin; China
| | - Cunjiang Song
- Key Laboratory of Molecular Microbiology and Technology for Ministry of Education; College of Life Sciences; Nankai University; Tianjin; China
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Guo W, Duan J, Geng W, Feng J, Wang S, Song C. Comparison of medium-chain-length polyhydroxyalkanoates synthases from Pseudomonas mendocina NK-01 with the same substrate specificity. Microbiol Res 2013; 168:231-7. [DOI: 10.1016/j.micres.2012.11.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2012] [Revised: 11/07/2012] [Accepted: 11/11/2012] [Indexed: 10/27/2022]
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43
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Augmented production of alginate oligosaccharides by the Pseudomonas mendocina NK-01 mutant. Carbohydr Res 2012; 352:109-16. [DOI: 10.1016/j.carres.2012.02.024] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2011] [Revised: 02/21/2012] [Accepted: 02/23/2012] [Indexed: 11/20/2022]
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44
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Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides. J Bacteriol 2011; 193:3413-4. [PMID: 21551299 DOI: 10.1128/jb.05068-11] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Pseudomonas mendocina NK-01 can synthesize medium-chain-length polyhydroxyalkanoate (PHA(MCL)) and alginate oligosaccharides (AO) simultaneously from glucose under conditions of limited nitrogen. Here, we report the complete sequence of the 5.4-Mbp genome of Pseudomonas mendocina NK-01, which was isolated from farmland soil in Tianjin, China.
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