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Audisio M, Muhr J, Polle A. Ectomycorrhizal fungi of Douglas-fir retain newly assimilated carbon derived from neighboring European beech. THE NEW PHYTOLOGIST 2024; 243:1980-1990. [PMID: 38952235 DOI: 10.1111/nph.19943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Accepted: 06/19/2024] [Indexed: 07/03/2024]
Abstract
Ectomycorrhizal (ECM) fungi distribute tree-derived carbon (C) via belowground hyphal networks in forest ecosystems. Here, we asked the following: (1) Is C transferred belowground to a neighboring tree retained in fungal structures or transported within the recipient tree? (2) Is the overlap of ectomycorrhizal fungi in mycorrhizal networks related to the amount of belowground C transfer? We used potted sapling pairs of European beech (Fagus sylvatica) and North-American Douglas-fir (Pseudotsuga menziesii) for 13CO2 pulse-labeling. We compared 13C transfer from beech (donor) to either beech or Douglas-fir (recipient) and identified the ECM species. We measured the 13C enrichment in soil, plant tissues, and ECM fractions of fungal-containing parts and plant transport tissues. In recipients, only fungal-containing tissue of ectomycorrhizas was significantly enriched in 13C and not the plant tissue. Douglas-fir recipients shared on average one ECM species with donors and had a lower 13C enrichment than beech recipients, which shared on average three species with donors. Our results support that recently assimilated C transferred belowground is shared among fungi colonizing tree roots but not among trees. In mixed forests with beech and Douglas-fir, the links for C movement might be hampered due to low mycorrhizal overlap with consequences for soil C cycling.
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Affiliation(s)
- Michela Audisio
- Forest Botany and Tree Physiology, University of Göttingen, Büsgenweg 2, Göttingen, 37077, Germany
| | - Jan Muhr
- Forest Botany and Tree Physiology, University of Göttingen, Büsgenweg 2, Göttingen, 37077, Germany
- Laboratory for Radio-isotopes, University of Göttingen, Büsgenweg 2, Göttingen, 37077, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Göttingen, Büsgenweg 2, Göttingen, 37077, Germany
- Laboratory for Radio-isotopes, University of Göttingen, Büsgenweg 2, Göttingen, 37077, Germany
- Centre for Sustainable Land Use, University of Göttingen, Göttingen, 37077, Germany
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Olanipon D, Boeraeve M, Jacquemyn H. Arbuscular mycorrhizal fungal diversity and potential association networks among African tropical forest trees. MYCORRHIZA 2024; 34:271-282. [PMID: 38850289 DOI: 10.1007/s00572-024-01156-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 05/26/2024] [Indexed: 06/10/2024]
Abstract
Tropical forests represent one of the most diverse and productive ecosystems on Earth. High productivity is sustained by efficient and rapid cycling of nutrients, which is in large part made possible by symbiotic associations between plants and mycorrhizal fungi. In these associations, an individual plant typically associates simultaneously with multiple fungi and the fungi associate with multiple plants, creating complex networks among fungi and plants. However, there are few studies that have investigated mycorrhizal fungal composition and diversity in tropical forest trees, particularly in Africa, or that assessed the structure of the network of associations among fungi and trees. In this study, we collected root and soil samples from Ise Forest Reserve (Southwest Nigeria) and used a metabarcoding approach to identify the dominant arbuscular mycorrhizal (AM) fungal taxa in the soil and associating with ten co-occurring tree species to assess variation in AM communities. Network analysis was used to elucidate the architecture of the network of associations between fungi and tree species. A total of 194 Operational Taxonomic Units (OTUs) belonging to six AM fungal families were identified, with 68% of all OTUs belonging to Glomeraceae. While AM fungal diversity did not differ among tree species, AM fungal community composition did. Network analyses showed that the network of associations was not significantly nested and showed a relatively low level of specialization (H2 = 0.43) and modularity (M = 0.44). We conclude that, although there were some differences in AM fungal community composition, the studied tree species associate with a large number of AM fungi. Similarly, most AM fungi had great host breadth and were detected in most tree species, thereby potentially working as interaction network hubs.
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Affiliation(s)
- Damilola Olanipon
- Department of Biological Sciences, Afe Babalola University, Ado Ekiti, Nigeria.
| | - Margaux Boeraeve
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, Sweden
- Department of Biology, UAntwerpen, Antwerpen, Belgium
| | - Hans Jacquemyn
- Biology Department, KU Leuven, Kasteelpark Arenberg 31, Heverlee, B-3001, Belgium
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Zhu YQ, Li XL, Zhao DX, Wei YL, Yuan HS. Four New Species of Tomentella (Thelephorales, Basidiomycota) from Subtropical Forests in Southwestern China. J Fungi (Basel) 2024; 10:440. [PMID: 39057325 PMCID: PMC11278398 DOI: 10.3390/jof10070440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 06/16/2024] [Accepted: 06/19/2024] [Indexed: 07/28/2024] Open
Abstract
Species of the basidiomycetous genus Tomentella are widely distributed throughout temperate forests. Numerous studies on the taxonomy and phylogeny of Tomentella have been conducted from the temperate zone in the Northern hemisphere, but few have been from subtropical forests. In this study, four new species, T. casiae, T. guiyangensis, T. olivaceomarginata and T. rotundata from the subtropical mixed forests of Southwestern China, are described and illustrated based on morphological characteristics and phylogenetic analyses of the internal transcribed spacer regions (ITS) and the large subunit of the nuclear ribosomal RNA gene (LSU). Molecular analyses using Maximum Likelihood and Bayesian analysis confirmed the phylogenetic positions of these four new species. Anatomical comparisons among the closely related species in phylogenetic and morphological features are discussed. Four new species could be distinguished by the characteristics of basidiocarps, the color of the hymenophoral surface, the size of the basidia, the shape of the basidiospores and some other features.
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Affiliation(s)
- Ya-Quan Zhu
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China; (Y.-Q.Z.); (D.-X.Z.); (Y.-L.W.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xue-Long Li
- Institute of Edible Fungi, Liaoning Academy of Agricultural Sciences, Shenyang 110161, China;
| | - Dong-Xue Zhao
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China; (Y.-Q.Z.); (D.-X.Z.); (Y.-L.W.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu-Lian Wei
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China; (Y.-Q.Z.); (D.-X.Z.); (Y.-L.W.)
| | - Hai-Sheng Yuan
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China; (Y.-Q.Z.); (D.-X.Z.); (Y.-L.W.)
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You YH, Park JM, Ku YB, Jeong TY, Lim K, Shin JH, Kim JS, Hong JW. Fungal Microbiome of Alive and Dead Korean Fir in its Native Habitats. MYCOBIOLOGY 2024; 52:68-84. [PMID: 38415173 PMCID: PMC10896143 DOI: 10.1080/12298093.2024.2307117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 01/15/2024] [Indexed: 02/29/2024]
Abstract
A rapid decline of Abies koreana has been reported in most of the natural alpine habitats in Korea. It is generally accepted that this phenomenon is due to climate change even though no clear conclusions have been drawn. Most research has focused on abiotic environmental factors, but studies on the relationships between A. koreana and soil fungal microbiomes are scarce. In this study, the rhizoplane and rhizosphere fungal communities in the alive and dead Korean fir trees from its three major natural habitats including Mt. Deogyu, Mt. Halla, and Mt. Jiri in Korea were investigated to identify specific soil fungal groups closely associated with A. koreana. Soil fungal diversity in each study site was significantly different from another based on the beta diversity calculations. Heat tree analysis at the genus level showed that Clavulina, Beauveria, and Tomentella were most abundant in the healthy trees probably by forming ectomycorrhizae with Korean fir growth and controlling pests and diseases. However, Calocera, Dacrymyces, Gyoerffyella, Hydnotrya, Microdochium, Hyaloscypha, Mycosymbioces, and Podospora were abundant in the dead trees. Our findings suggested that Clavulina, Beauveria, and Tomentella are the major players that could be considered in future reforestation programs to establish ectomycorrhizal networks and promote growth. These genera may have played a significant role in the survival and growth of A. koreana in its natural habitats. In particular, the genus Gyoerffyella may account for the death of the seedlings. Our work presented exploratory research on the specific fungal taxa associated with the status of A. koreana.
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Affiliation(s)
- Young-Hyun You
- Biological Resources Utilization Division, National Institute of Biological Resources, Incheon, Republic of Korea
| | - Jong Myong Park
- Water Quality Research Institute, Waterworks Headquarters Incheon Metropolitan City, Incheon, Republic of Korea
| | - Youn-Bong Ku
- Biological Resources Utilization Division, National Institute of Biological Resources, Incheon, Republic of Korea
| | - Tae-Yong Jeong
- Department of Environmental Science, College of Natural Sciences, Hankuk University of Foreign Studies, Yongin, Republic of Korea
| | - Kyeongmo Lim
- Department of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Jae-Ho Shin
- Department of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Jin-Suk Kim
- Korea Fern Research Society, Seoul, Republic of Korea
| | - Ji Won Hong
- Department of Hydrogen and Renewable Energy, Kyungpook National University, Daegu, Republic of Korea
- Advanced Bio-resource Research Center, Kyungpook National University, Daegu, Republic of Korea
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Yang Y, Qiu K, Xie Y, Li X, Zhang S, Liu W, Huang Y, Cui L, Wang S, Bao P. Geographical, climatic, and soil factors control the altitudinal pattern of rhizosphere microbial diversity and its driving effect on root zone soil multifunctionality in mountain ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166932. [PMID: 37690759 DOI: 10.1016/j.scitotenv.2023.166932] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 09/05/2023] [Accepted: 09/06/2023] [Indexed: 09/12/2023]
Abstract
Shifts in rhizosphere soil microorganisms of dominant plants' response to climate change profoundly impact mountain soil ecosystem multifunctionality; relatively little is known about the relationship between them and how they depend on long-term environmental drivers. Here, we conducted analyses of rhizosphere microbial altitudinal pattern, community assembly, and co-occurrence network of 6 dominant plants in six typical vegetation zones ranging from 1350 to 2900 m (a.s.l.) in Helan Mountains by absolute quantitative sequencing technology, and finally related the microbiomes to root zone soil multifunctionality ('soil multifunctionality' hereafter), the environmental dependence of the relationship was explored. It was found that the altitudinal pattern of rhizosphere soil bacterial and fungal diversities differed significantly. Higher co-occurrence and more potential interactions of Stipa breviflora and Carex coninux were found at the lowest and highest altitudes. Bacterial α diversity, the identity of some dominant bacterial and fungal taxa, had significant positive or negative effects on soil multifunctionality. The effect sizes of positive effects of microbial diversity on soil multifunctionality were greater than those of negative effects. These results indicated that the balance of positive and negative effects of microbes determines the impact of microbial diversity on soil multifunctionality. As the number of microbes at the phylum level increases, there will be a net gain in soil multifunctionality. Our study reveals that geographical and climatic factors can directly or modulate the effects of soil properties on rhizosphere microbial diversity, thereby affecting the driving effect of microbial diversity on soil multifunctionality, and points to the rhizosphere bacterial diversity rather than the fungi being strongly associated with soil multifunctionality. This work has important ecological implications for predicting how multiple environment-plant-soil-microorganisms interactions in mountain ecosystems will respond to future climate change.
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Affiliation(s)
- Yi Yang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Kaiyang Qiu
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China.
| | - Yingzhong Xie
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Xiaocong Li
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Shuo Zhang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Wangsuo Liu
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Yeyun Huang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Luyao Cui
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Siyao Wang
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
| | - Pingan Bao
- College of Forestry and Prataculture, Ningxia University, Yinchuan, China; Ningxia Grassland and Animal Husbandry Engineering Technology Research Center, Yinchuan, China; Breeding Base for State Key Laboratory of Land Degradation and Ecological Restoration of Northwest China, Yinchuan, China; Key Laboratory for Model Innovation in Forage Production Efficiency, Ministry of Agriculture and Rural Affairs, Ningxia University, Yinchuan, China
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Pena R, Bluhm SL, Ammerschubert S, Agüi-Gonzalez P, Rizzoli SO, Scheu S, Polle A. Mycorrhizal C/N ratio determines plant-derived carbon and nitrogen allocation to symbiosis. Commun Biol 2023; 6:1230. [PMID: 38053000 PMCID: PMC10698078 DOI: 10.1038/s42003-023-05591-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 11/15/2023] [Indexed: 12/07/2023] Open
Abstract
Carbon allocation of trees to ectomycorrhizas is thought to shape forest nutrient cycling, but the sink activities of different fungal taxa for host resources are unknown. Here, we investigate fungal taxon-specific differences in naturally composed ectomycorrhizal (EM) communities for plant-derived carbon and nitrogen. After aboveground dual labeling of young beech with 15N and 13C, ectomycorrhizas formed with different fungal taxa exhibit strong differences in label enrichment. Secondary Ion Mass Spectrometry (SIMS) imaging of nitrogen in cross sections of ectomycorrhizas demonstrates plant-derived 15N in both root and fungal structures. Isotope enrichment in ectomycorrhizas correlates with that in the corresponding ectomycorrhiza-attached lateral root, supporting fungal taxon-specific N and C fluxes in ectomycorrhizas. The enrichments with 13C and 15N in the symbiosis decrease with increasing C/N ratio of ectomycorrhizas, converging to zero at high C/N. The relative abundances of EM fungal species on roots are positively correlated with 13C enrichment, demonstrating higher fitness of stronger than of less C-demanding symbioses. Overall, our results support that differences among the C/N ratios in ectomycorrhizas formed with different fungal species regulate the supply of the symbioses with host-derived carbon and provide insights on functional traits of ectomycorrhizas, which are important for major ecosystem processes.
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Affiliation(s)
- Rodica Pena
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
- Department of Sustainable Land Management, School of Agriculture Policy and Development, University of Reading, Reading, UK
| | - Sarah L Bluhm
- J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, University of Göttingen, Göttingen, Germany
| | - Silke Ammerschubert
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
| | - Paola Agüi-Gonzalez
- Department of Neuro- and Sensory Physiology and Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, Göttingen, Germany
| | - Silvio O Rizzoli
- Department of Neuro- and Sensory Physiology and Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, Göttingen, Germany
| | - Stefan Scheu
- J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, University of Göttingen, Göttingen, Germany
- Centre for Biodiversity and Sustainable Land Use, University of Göttingen, Göttingen, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany.
- Centre for Biodiversity and Sustainable Land Use, University of Göttingen, Göttingen, Germany.
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Carreon-Ortiz H, Valdez F, Melin P, Castillo O. Architecture Optimization of a Non-Linear Autoregressive Neural Networks for Mackey-Glass Time Series Prediction Using Discrete Mycorrhiza Optimization Algorithm. MICROMACHINES 2023; 14:149. [PMID: 36677210 PMCID: PMC9864806 DOI: 10.3390/mi14010149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/30/2022] [Accepted: 12/30/2022] [Indexed: 06/17/2023]
Abstract
Recurrent Neural Networks (RNN) are basically used for applications with time series and sequential data and are currently being used in embedded devices. However, one of their drawbacks is that RNNs have a high computational cost and require the use of a significant amount of memory space. Therefore, computer equipment with a large processing capacity and memory is required. In this article, we experiment with Nonlinear Autoregressive Neural Networks (NARNN), which are a type of RNN, and we use the Discrete Mycorrhizal Optimization Algorithm (DMOA) in the optimization of the NARNN architecture. We used the Mackey-Glass chaotic time series (MG) to test the proposed approach, and very good results were obtained. In addition, some comparisons were made with other methods that used the MG and other types of Neural Networks such as Backpropagation and ANFIS, also obtaining good results. The proposed algorithm can be applied to robots, microsystems, sensors, devices, MEMS, microfluidics, piezoelectricity, motors, biosensors, 3D printing, etc.
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Hofmann B, Dreyling L, Dal Grande F, Otte J, Schmitt I. Habitat and tree species identity shape aboveground and belowground fungal communities in central European forests. Front Microbiol 2023; 14:1067906. [PMID: 36950169 PMCID: PMC10025312 DOI: 10.3389/fmicb.2023.1067906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 02/07/2023] [Indexed: 03/08/2023] Open
Abstract
Introduction Trees interact with fungi in mutualistic, saprotrophic, and pathogenic relationships. With their extensive aboveground and belowground structures, trees provide diverse habitats for fungi. Thus, tree species identity is an important driver of fungal community composition in forests. Methods Here we investigate how forest habitat (bark surface vs. soil) and tree species identity (deciduous vs. coniferous) affect fungal communities in two Central European forests. We assess differences and interactions between fungal communities associated with bark surfaces and soil, in forest plots dominated either by Fagus sylvatica, Picea abies, or Pinus sylvestris in two study regions in southwestern and northeastern Germany. Results ITS metabarcoding yielded 3,357 fungal amplicon sequence variants (ASVs) in the northern and 6,088 in the southern region. Overall, soil communities were 4.7 times more diverse than bark communities. Habitat type explained 48-69% of the variation in alpha diversity, while tree species identity explained >1-3%. NMDS ordinations showed that habitat type and host tree species structured the fungal communities. Overall, few fungal taxa were shared between habitats, or between tree species, but the shared taxa were highly abundant. Network analyses, based on co-occurrence patterns, indicate that aboveground and belowground communities form distinct subnetworks. Discussion Our study suggests that habitat (bark versus soil) and tree species identity are important factors structuring fungal communities in temperate European forests. The aboveground (bark-associated) fungal community is currently poorly known, including a high proportion of reads assigned to "unknown Ascomycota" or "unknown Dothideomycetes." The role of bark as a habitat and reservoir of unique fungal diversity in forests has been underestimated.
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Affiliation(s)
- Benjamin Hofmann
- Institute of Ecology, Diversity and Evolution, Goethe University Frankfurt, Frankfurt, Germany
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
| | - Lukas Dreyling
- Institute of Ecology, Diversity and Evolution, Goethe University Frankfurt, Frankfurt, Germany
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
| | - Francesco Dal Grande
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
- Department of Biology, University of Padova, Padua, Italy
- National Biodiversity Future Center (NBFC), Palermo, Italy
| | - Jürgen Otte
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
| | - Imke Schmitt
- Institute of Ecology, Diversity and Evolution, Goethe University Frankfurt, Frankfurt, Germany
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt, Germany
- *Correspondence: Imke Schmitt,
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Phylogenetic Analyses of Hydnobolites and New Species from China. J Fungi (Basel) 2022; 8:jof8121302. [PMID: 36547635 PMCID: PMC9784535 DOI: 10.3390/jof8121302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 12/11/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022] Open
Abstract
Hydnobolites is an ectomycorrhizal fungal genus with hypogeous ascomata in the family Pezizaceae (Pezizales). Molecular analyses of Hydnobolites using both single (ITS) and concatenated gene datasets (ITS-nLSU) showed a total of 223 sequences, including 92 newly gained sequences from Chinese specimens. Phylogenetic results based on these two datasets revealed seven distinct phylogenetic clades. Among them, the ITS phylogenetic tree confirmed the presence of at least 42 phylogenetic species in Hydnobolites. Combined the morphological observations with molecular analyses, five new species of Hydnobolites translucidus sp. nov., H. subrufus sp. nov., H. lini sp. nov., H. sichuanensis sp. nov. and H. tenuiperidius sp. nov., and one new record species of H. cerebriformis Tul., were illustrated from Southwest China. Macro- and micro-morphological analyses of ascomata revealed a few, but diagnostic differences between the H. cerebriformis complex, while the similarities of the ITS sequences ranged from 94.4 to 97.2% resulting in well-supported clades.
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Dietrich M, Montesinos-Navarro A, Gabriel R, Strasser F, Meier DV, Mayerhofer W, Gorka S, Wiesenbauer J, Martin V, Weidinger M, Richter A, Kaiser C, Woebken D. Both abundant and rare fungi colonizing Fagus sylvatica ectomycorrhizal root-tips shape associated bacterial communities. Commun Biol 2022; 5:1261. [DOI: 10.1038/s42003-022-04178-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 10/27/2022] [Indexed: 11/18/2022] Open
Abstract
AbstractEctomycorrhizal fungi live in close association with their host plants and form complex interactions with bacterial/archaeal communities in soil. We investigated whether abundant or rare ectomycorrhizal fungi on root-tips of young beech trees (Fagus sylvatica) shape bacterial/archaeal communities. We sequenced 16S rRNA genes and fungal internal transcribed spacer regions of individual root-tips and used ecological networks to detect the tendency of certain assemblies of fungal and bacterial/archaeal taxa to inhabit the same root-tip (i.e. modularity). Individual ectomycorrhizal root-tips hosted distinct fungal communities associated with unique bacterial/archaeal communities. The structure of the fungal-bacterial/archaeal association was determined by both, dominant and rare fungi. Integrating our data in a conceptual framework suggests that the effect of rare fungi on the bacterial/archaeal communities of ectomycorrhizal root-tips contributes to assemblages of bacteria/archaea on root-tips. This highlights the potential impact of complex fine-scale interactions between root-tip associated fungi and other soil microorganisms for the ectomycorrhizal symbiosis.
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Kutos S, Barnes EM, Bhutada A, Lewis JD. Preferential associations of soil fungal taxa under mixed compositions of eastern American tree species. FEMS Microbiol Ecol 2022; 98:6581587. [PMID: 35521705 DOI: 10.1093/femsec/fiac056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 04/12/2022] [Accepted: 05/04/2022] [Indexed: 11/14/2022] Open
Abstract
Soil fungi are vital to forest ecosystem function, in part through their role mediating tree responses to environmental factors, as well as directly through effects on resource cycling. While the distribution of soil fungi can vary with abiotic factors, plant species identity is also known to affect community composition. However, the particular influence that a plant will have on its soil microbiota remains difficult to predict. Here, we paired amplicon sequencing and enzymatic assays to assess soil fungal composition and function under three tree species, Quercus rubra, Betula nigra, and Acer rubrum, planted individually and in all combinations in a greenhouse. We observed that fungal communities differed between each of the individual planted trees, suggesting at least some fungal taxa may associate preferentially with these tree species. Additionally, fungal community composition under mixed-tree plantings broadly differed from the individual planted trees, suggesting mixing of these distinct soil fungal communities. The data also suggest that there were larger enzymatic activities in the individual plantings as compared to all mixed-tree plantings which may be due to variations in fungal community composition. This study provides further evidence of the importance of tree identity on soil microbiota and functional changes to forest soils.
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Affiliation(s)
- Steve Kutos
- Department of Biological Sciences, Fordham University, Bronx, NY 10458, USA.,Louis Calder Center - Biological Field Station, Fordham University, Armonk, NY 10504, USA
| | - Elle M Barnes
- Department of Biological Sciences, Fordham University, Bronx, NY 10458, USA.,Louis Calder Center - Biological Field Station, Fordham University, Armonk, NY 10504, USA
| | - Arnav Bhutada
- Department of Biological Sciences, Fordham University, Bronx, NY 10458, USA
| | - J D Lewis
- Department of Biological Sciences, Fordham University, Bronx, NY 10458, USA.,Louis Calder Center - Biological Field Station, Fordham University, Armonk, NY 10504, USA
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12
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Kryuchkova OE. Ecotrophic Structure of the Macromycete Biota of Introduced Tree Species Growing in Krasnoyarsk Green Spaces. CONTEMP PROBL ECOL+ 2022. [DOI: 10.1134/s1995425522020056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Mayerhofer W, Schintlmeister A, Dietrich M, Gorka S, Wiesenbauer J, Martin V, Gabriel R, Reipert S, Weidinger M, Clode P, Wagner M, Woebken D, Richter A, Kaiser C. Recently photoassimilated carbon and fungus-delivered nitrogen are spatially correlated in the ectomycorrhizal tissue of Fagus sylvatica. THE NEW PHYTOLOGIST 2021; 232:2457-2474. [PMID: 34196001 PMCID: PMC9291818 DOI: 10.1111/nph.17591] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 06/01/2021] [Indexed: 05/04/2023]
Abstract
Ectomycorrhizal plants trade plant-assimilated carbon for soil nutrients with their fungal partners. The underlying mechanisms, however, are not fully understood. Here we investigate the exchange of carbon for nitrogen in the ectomycorrhizal symbiosis of Fagus sylvatica across different spatial scales from the root system to the cellular level. We provided 15 N-labelled nitrogen to mycorrhizal hyphae associated with one half of the root system of young beech trees, while exposing plants to a 13 CO2 atmosphere. We analysed the short-term distribution of 13 C and 15 N in the root system with isotope-ratio mass spectrometry, and at the cellular scale within a mycorrhizal root tip with nanoscale secondary ion mass spectrometry (NanoSIMS). At the root system scale, plants did not allocate more 13 C to root parts that received more 15 N. Nanoscale secondary ion mass spectrometry imaging, however, revealed a highly heterogenous, and spatially significantly correlated distribution of 13 C and 15 N at the cellular scale. Our results indicate that, on a coarse scale, plants do not allocate a larger proportion of photoassimilated C to root parts associated with N-delivering ectomycorrhizal fungi. Within the ectomycorrhizal tissue, however, recently plant-assimilated C and fungus-delivered N were spatially strongly coupled. Here, NanoSIMS visualisation provides an initial insight into the regulation of ectomycorrhizal C and N exchange at the microscale.
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Affiliation(s)
- Werner Mayerhofer
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Arno Schintlmeister
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
- Large‐Instrument Facility for Environmental and Isotope Mass SpectrometryUniversity of ViennaViennaA‐1030Austria
| | - Marlies Dietrich
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Stefan Gorka
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Julia Wiesenbauer
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Victoria Martin
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Raphael Gabriel
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Siegfried Reipert
- Core Facility Cell Imaging and Ultrastructure ResearchUniversity of ViennaViennaA‐1030Austria
| | - Marieluise Weidinger
- Core Facility Cell Imaging and Ultrastructure ResearchUniversity of ViennaViennaA‐1030Austria
| | - Peta Clode
- Centre for Microscopy, Characterisation & AnalysisUniversity of Western AustraliaPerthWA6009Australia
| | - Michael Wagner
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
- Large‐Instrument Facility for Environmental and Isotope Mass SpectrometryUniversity of ViennaViennaA‐1030Austria
- Department of Chemistry and BioscienceAalborg UniversityAalborgDK‐9220Denmark
| | - Dagmar Woebken
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Andreas Richter
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
| | - Christina Kaiser
- Centre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaA‐1030Austria
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14
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Mayerhofer W, Schintlmeister A, Dietrich M, Gorka S, Wiesenbauer J, Martin V, Gabriel R, Reipert S, Weidinger M, Clode P, Wagner M, Woebken D, Richter A, Kaiser C. Recently photoassimilated carbon and fungus-delivered nitrogen are spatially correlated in the ectomycorrhizal tissue of Fagus sylvatica. THE NEW PHYTOLOGIST 2021; 232:2457-2474. [PMID: 34196001 DOI: 10.5281/zenodo.5035482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 06/01/2021] [Indexed: 05/21/2023]
Abstract
Ectomycorrhizal plants trade plant-assimilated carbon for soil nutrients with their fungal partners. The underlying mechanisms, however, are not fully understood. Here we investigate the exchange of carbon for nitrogen in the ectomycorrhizal symbiosis of Fagus sylvatica across different spatial scales from the root system to the cellular level. We provided 15 N-labelled nitrogen to mycorrhizal hyphae associated with one half of the root system of young beech trees, while exposing plants to a 13 CO2 atmosphere. We analysed the short-term distribution of 13 C and 15 N in the root system with isotope-ratio mass spectrometry, and at the cellular scale within a mycorrhizal root tip with nanoscale secondary ion mass spectrometry (NanoSIMS). At the root system scale, plants did not allocate more 13 C to root parts that received more 15 N. Nanoscale secondary ion mass spectrometry imaging, however, revealed a highly heterogenous, and spatially significantly correlated distribution of 13 C and 15 N at the cellular scale. Our results indicate that, on a coarse scale, plants do not allocate a larger proportion of photoassimilated C to root parts associated with N-delivering ectomycorrhizal fungi. Within the ectomycorrhizal tissue, however, recently plant-assimilated C and fungus-delivered N were spatially strongly coupled. Here, NanoSIMS visualisation provides an initial insight into the regulation of ectomycorrhizal C and N exchange at the microscale.
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Affiliation(s)
- Werner Mayerhofer
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Arno Schintlmeister
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
- Large-Instrument Facility for Environmental and Isotope Mass Spectrometry, University of Vienna, Vienna, A-1030, Austria
| | - Marlies Dietrich
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Stefan Gorka
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Julia Wiesenbauer
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Victoria Martin
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Raphael Gabriel
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Siegfried Reipert
- Core Facility Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, A-1030, Austria
| | - Marieluise Weidinger
- Core Facility Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, A-1030, Austria
| | - Peta Clode
- Centre for Microscopy, Characterisation & Analysis, University of Western Australia, Perth, WA, 6009, Australia
| | - Michael Wagner
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
- Large-Instrument Facility for Environmental and Isotope Mass Spectrometry, University of Vienna, Vienna, A-1030, Austria
- Department of Chemistry and Bioscience, Aalborg University, Aalborg, DK-9220, Denmark
| | - Dagmar Woebken
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Andreas Richter
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
| | - Christina Kaiser
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Vienna, A-1030, Austria
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15
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Janowski D, Nara K. Unique host effect of Tilia japonica on ectomycorrhizal fungal communities independent of the tree’s dominance: A rare example of a generalist host? Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
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16
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Boeraeve M, Leroux O, De Lange R, Verbeken A, Jacquemyn H. The Effect of Surrounding Vegetation on the Mycorrhizal Fungal Communities of the Temperate Tree Crataegus monogyna Jacq. FRONTIERS IN FUNGAL BIOLOGY 2021; 2:741813. [PMID: 37744148 PMCID: PMC10512229 DOI: 10.3389/ffunb.2021.741813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 09/29/2021] [Indexed: 09/26/2023]
Abstract
About 90% of all land plants form mycorrhiza to facilitate the acquisition of essential nutrients such as phosphorus, nitrogen, and sometimes carbon. Based on the morphology of the interaction and the identity of the interacting plants and fungi, four major mycorrhizal types have been distinguished: arbuscular mycorrhiza (AM), ectomycorrhizal (EcM), ericoid mycorrhiza, and orchid mycorrhiza. Although most plants are assumed to form only one type of mycorrhiza, some species simultaneously form associations with two mycorrhizal types within a single root system. However, the dual-mycorrhizal status of many species is under discussion and in some plant species the simultaneous association with two mycorrhizal types varies in space or time or depends on the ecological context. Here, we assessed the mycorrhizal communities associating with common hawthorn (Crataegus monogyna), a small tree that commonly associates with AM fungi, and investigated the potential factors that underlie variation in mycorrhizal community composition. Histological staining of C. monogyna roots showed the presence of a Hartig net and hyphal sheaths in and around the roots, demonstrating the capacity of C. monogyna to form EcM. Meta-barcoding of soil and root samples of C. monogyna collected in AM-dominated grassland vegetation and in mixed AM + EcM forest vegetation showed a much higher number of EcM sequences and OTUs in root and soil samples from mixed AM + EcM vegetation than in samples from pure AM vegetation. We conclude that C. monogyna is able to form both AM and EcM, but that the extent to which it does depends on the environmental context, i.e., the mycorrhizal type of the surrounding vegetation.
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Affiliation(s)
- Margaux Boeraeve
- Plant Conservation and Population Biology, Biology Department, KU Leuven, Leuven, Belgium
| | | | - Ruben De Lange
- Research Group Mycology, Department of Biology, Ghent University, Ghent, Belgium
| | - Annemieke Verbeken
- Research Group Mycology, Department of Biology, Ghent University, Ghent, Belgium
| | - Hans Jacquemyn
- Plant Conservation and Population Biology, Biology Department, KU Leuven, Leuven, Belgium
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17
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Khokon AM, Schneider D, Daniel R, Polle A. Soil Layers Matter: Vertical Stratification of Root-Associated Fungal Assemblages in Temperate Forests Reveals Differences in Habitat Colonization. Microorganisms 2021; 9:2131. [PMID: 34683452 PMCID: PMC8537680 DOI: 10.3390/microorganisms9102131] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 09/22/2021] [Accepted: 09/23/2021] [Indexed: 11/17/2022] Open
Abstract
Ectomycorrhizal and saprotrophic fungi play pivotal roles in ecosystem functioning. Here, we studied the vertical differentiation of root-associated fungi (RAF) in temperate forests. We analysed RAF assemblages in the organic and mineral soil from 150 experimental forest plots across three biogeographic regions spanning a distance of about 800 km. Saprotrophic RAF showed the highest richness in organic and symbiotrophic RAF in mineral soil. Symbiotrophic RAF exhibited higher relative abundances than saprotrophic fungi in both soil layers. Beta-diversity of RAF was mainly due to turnover between organic and mineral soil and showed regional differences for symbiotrophic and saprotrophic fungi. Regional differences were also found for different phylogenetic levels, i.e., fungal orders and indicator species in the organic and mineral soil, supporting that habitat conditions strongly influence differentiation of RAF assemblages. Important exceptions were fungal orders that occurred irrespective of the habitat conditions in distinct soil layers across the biogeographic gradient: Russulales and Cantharellales (ectomycorrhizal fungi) were enriched in RAF assemblages in mineral soil, whereas saprotrophic Polyporales and Sordariales and ectomycorrhizal Boletales were enriched in RAF assemblages in the organic layer. These results underpin a phylogenetic signature for niche partitioning at the rank of fungal orders and suggest that RAF assembly entails two strategies encompassing flexible and territorial habitat colonization by different fungal taxa.
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Affiliation(s)
- Anis Mahmud Khokon
- Department of Forest Botany and Tree Physiology, University of Göttingen, 37077 Göttingen, Germany;
| | - Dominik Schneider
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, 37077 Göttingen, Germany; (D.S.); (R.D.)
| | - Rolf Daniel
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, 37077 Göttingen, Germany; (D.S.); (R.D.)
| | - Andrea Polle
- Department of Forest Botany and Tree Physiology, University of Göttingen, 37077 Göttingen, Germany;
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18
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Germain SJ, Lutz JA. Shared friends counterbalance shared enemies in old forests. Ecology 2021; 102:e03495. [PMID: 34309021 DOI: 10.1002/ecy.3495] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 05/17/2021] [Accepted: 05/26/2021] [Indexed: 11/09/2022]
Abstract
Mycorrhizal mutualisms are nearly ubiquitous across plant communities. Yet, it is still unknown whether facilitation among plants arises primarily from these mycorrhizal networks or from physical and ecological attributes of plants themselves. Here, we tested the relative contributions of mycorrhizae and plants to both positive and negative biotic interactions to determine whether plant-soil feedbacks with mycorrhizae neutralize competition and enemies within multitrophic forest community networks. We used Bayesian hierarchical generalized linear modeling to examine mycorrhizal-guild-specific and mortality-cause-specific woody plant survival compiled from a spatially and temporally explicit data set comprising 101,096 woody plants from three mixed-conifer forests across western North America. We found positive plant-soil feedbacks for large-diameter trees: species-rich woody plant communities indirectly promoted large tree survival when connected via mycorrhizal networks. Shared mycorrhizae primarily counterbalanced apparent competition mediated by tree enemies (e.g., bark beetles, soil pathogens) rather than diffuse competition between plants. We did not find the same survival benefits for small trees or shrubs. Our findings suggest that lower large-diameter tree mortality susceptibility in species-rich temperate forests resulted from greater access to shared mycorrhizal networks. The interrelated importance of aboveground and belowground biodiversity to large tree survival may be critical for counteracting increasing pathogen, bark beetle, and density threats.
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Affiliation(s)
- Sara J Germain
- Department of Wildland Resources, Utah State University, Logan, Utah, 84322-5230, USA
| | - James A Lutz
- Department of Wildland Resources, Utah State University, Logan, Utah, 84322-5230, USA
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19
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Jeong M, Choi DH, Cheon WJ, Kim JG. Pyrosequencing and Taxonomic Composition of the Fungal Community from Soil of Tricholoma matsutake in Gyeongju. J Microbiol Biotechnol 2021; 31:686-695. [PMID: 33782219 PMCID: PMC9705868 DOI: 10.4014/jmb.2103.03021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 03/23/2021] [Accepted: 03/24/2021] [Indexed: 12/15/2022]
Abstract
Tricholoma matsutake is an ectomycorrhizal fungus that has a symbiotic relationship with the root of Pinus densiflora. Soil microbial communities greatly affect the growth of T. matsutake, however, few studies have examined the characteristics of these communities. In the present study, we analyzed soil fungal communities from Gyeongju and Yeongdeok using metagenomic pyrosequencing to investigate differences in fungal species diversity, richness, and taxonomic composition between the soil under T. matsutake fruiting bodies (Sample 2) and soil where the fairy ring of T. matsutake was no longer present (Sample 1). The same spot was investigated three times at intervals of four months to observe changes in the community. In the samples from Yeongdeok, the number of valid reads was lower than that at Gyeongju. The operational taxonomic units of most Sample 2 groups were less than those of Sample 1 groups, indicating that fungal diversity was low in the T. matsutakedominant soil. The soil under the T. matsutake fruiting bodies was dominated by more than 51% T. matsutake. From fall to the following spring, the ratio of T. matsutake decreased. Basidiomycota was the dominant phylum in most samples. G-F1-2, G-F2-2, and Y-F1-2 had the genera Tricholoma, Umbelopsis, Oidiodendron, Sagenomella, Cladophialophora, and Phialocephala in common. G-F1-1, G-F2-1, and Y-F1-1 had 10 genera including Umbelopsis and Sagenomella in common. From fall to the following spring, the amount of phyla Basidiomycota and Mucoromycota gradually decreased but that of phylum Ascomycota increased. We suggest that the genus Umbelopsis is positively related to T. matsutake.
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Affiliation(s)
- Minji Jeong
- Department of Life Sciences and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Doo-Ho Choi
- Department of Life Sciences and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Woo-Jae Cheon
- Department of Forest Environment, Gyeongsangbuk-do Forest Environment Research Institute, Gyeong-ju 38174, Republic of Korea
| | - Jong-Guk Kim
- Department of Life Sciences and Biotechnology, Kyungpook National University, Daegu 41566, Republic of Korea,Corresponding author Phone: +82-53-950-5379 Fax: +82-53-955-5379 E-mail:
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20
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Veselá P, Vašutová M, Edwards-Jonášová M, Holub F, Fleischer P, Cudlín P. Management After Windstorm Affects the Composition of Ectomycorrhizal Symbionts of Regenerating Trees but Not Their Mycorrhizal Networks. FRONTIERS IN PLANT SCIENCE 2021; 12:641232. [PMID: 34054889 PMCID: PMC8160286 DOI: 10.3389/fpls.2021.641232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 04/06/2021] [Indexed: 06/12/2023]
Abstract
Due to ongoing climate change, forests are expected to face significant disturbances more frequently than in the past. Appropriate management is intended to facilitate forest regeneration. Because European temperate forests mostly consist of trees associated with ectomycorrhizal (ECM) fungi, understanding their role in these disturbances is important to develop strategies to minimize their consequences and effectively restore forests. Our aim was to determine how traditional (EXT) and nonintervention (NEX) management in originally Norway spruce (Picea abies) forests with an admixture of European larch (Larix decidua) affect ECM fungal communities and the potential to interconnect different tree species via ECM networks 15 years after a windstorm. Ten plots in NEX and 10 plots in EXT with the co-occurrences of Norway spruce, European larch, and silver birch (Betula pendula) were selected, and a total of 57 ECM taxa were identified using ITS sequencing from ECM root tips. In both treatments, five ECM species associated with all the studied tree species dominated, with a total abundance of approximately 50% in the examined root samples. Because there were no significant differences between treatments in the number of ECM species associated with different tree species combinations in individual plots, we concluded that the management type did not have a significant effect on networking. However, management significantly affected the compositions of ECM symbionts of Norway spruce and European larch but not those of silver birch. Although this result is explained by the occurrence of seedlings and ECM propagules that were present in the original forest, the consequences are difficult to assess without knowledge of the ecology of different ECM symbionts.
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Affiliation(s)
- Petra Veselá
- Department of Carbon Storage in the Landscape, Global Change Research Institute of the Czech Academy of Sciences, Brno, Czechia
- Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czechia
| | - Martina Vašutová
- Department of Carbon Storage in the Landscape, Global Change Research Institute of the Czech Academy of Sciences, České Budějovice, Czechia
- Department of Botany, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Magda Edwards-Jonášová
- Department of Carbon Storage in the Landscape, Global Change Research Institute of the Czech Academy of Sciences, České Budějovice, Czechia
| | - Filip Holub
- Department of Carbon Storage in the Landscape, Global Change Research Institute of the Czech Academy of Sciences, České Budějovice, Czechia
| | - Peter Fleischer
- Department of Integrated Forest and Landscape Protection, Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovakia
| | - Pavel Cudlín
- Department of Carbon Storage in the Landscape, Global Change Research Institute of the Czech Academy of Sciences, České Budějovice, Czechia
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21
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Heklau H, Schindler N, Buscot F, Eisenhauer N, Ferlian O, Prada Salcedo LD, Bruelheide H. Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners. Ecol Evol 2021; 11:5424-5440. [PMID: 34026018 PMCID: PMC8131788 DOI: 10.1002/ece3.7437] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 02/22/2021] [Accepted: 02/26/2021] [Indexed: 11/29/2022] Open
Abstract
Recent studies found that the majority of shrub and tree species are associated with both arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) fungi. However, our knowledge on how different mycorrhizal types interact with each other is still limited. We asked whether the combination of hosts with a preferred association with either AM or EM fungi increases the host tree roots' mycorrhization rate and affects AM and EM fungal richness and community composition.We established a tree diversity experiment, where five tree species of each of the two mycorrhiza types were planted in monocultures, two-species and four-species mixtures. We applied morphological assessment to estimate mycorrhization rates and next-generation molecular sequencing to quantify mycobiont richness.Both the morphological and molecular assessment revealed dual-mycorrhizal colonization in 79% and 100% of the samples, respectively. OTU community composition strongly differed between AM and EM trees. While host tree species richness did not affect mycorrhization rates, we observed significant effects of mixing AM- and EM-associated hosts in AM mycorrhization rate. Glomeromycota richness was larger in monotypic AM tree combinations than in AM-EM mixtures, pointing to a dilution or suppression effect of AM by EM trees. We found a strong match between morphological quantification of AM mycorrhization rate and Glomeromycota richness. Synthesis. We provide evidence that the combination of hosts differing in their preferred mycorrhiza association affects the host's fungal community composition, thus revealing important biotic interactions among trees and their associated fungi.
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Affiliation(s)
- Heike Heklau
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - Nicole Schindler
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
| | - François Buscot
- Department of Soil EcologyHelmholtz Centre for Environmental Research – UFZHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of BiologyLeipzig UniversityLeipzigGermany
| | - Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute of BiologyLeipzig UniversityLeipzigGermany
| | - Luis D. Prada Salcedo
- Department of Soil EcologyHelmholtz Centre for Environmental Research – UFZHalle (Saale)Germany
| | - Helge Bruelheide
- Institute of Biology/Geobotany and Botanical GardenMartin Luther University Halle‐WittenbergHalle (Saale)Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
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22
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Zhang X, Xing J, Zhu X, Zhao B, Liu C, Dong J, Hong L, Liu Y, Chen Y, Wen Z. Diversity and community structure of ectomycorrhizal fungi in Pinus thunbergii coastal forests bordering the Yellow Sea of China. Braz J Microbiol 2021; 52:801-809. [PMID: 33813730 DOI: 10.1007/s42770-021-00486-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 03/29/2021] [Indexed: 11/29/2022] Open
Abstract
Ectomycorrhizas play a fundamental role in the function of forest ecosystems, being essential for plant nutrition absorption and soil quality. Many afforestation and reforestation programmes have begun to recover and maintain coastal forests in China, using pine species including Pinus thunbergii. We investigated the ectomycorrhizal colonization status of P. thunbergii in coastal pine forests of the Yellow Sea of China. We identified a total of 53 ectomycorrhizal fungal species in 74 soil samples collected from three sites and found that Thelephoraceae (10 spp.) and Russulaceae (8 spp.) were the most species-rich ectomycorrhizal fungal lineages. Russula sp. 1 was the most abundant species, accounting for 15.3% of the total ectomycorrhizal tips identified. Most of the remaining species were rare. At this small scale, host identity had no significant effect on the ectomycorrhizal fungal community composition (A = 0.036, P = 0.258), but sampling sites did (A = 0.135, P = 0.041). In addition, Na+ and K+ content and soil pH had significant effects on the ectomycorrhizal fungal community. The ectomycorrhizal fungal community associated with different host plants will become an important new direction for research, as ectomycorrhiza may have the potential to improve host capacity to establish in salt-stressed environments. This will provide a theoretical basis and technical support for saline soil reforestation and rehabilitation using pine species with compatible, native ectomycorrhizal fungi in Yellow Sea coastal areas.
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Affiliation(s)
- Xinzhe Zhang
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China
| | - Jincheng Xing
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Xiaomei Zhu
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Baoquan Zhao
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Chong Liu
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Jing Dong
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Lizhou Hong
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China
| | - Yunfen Liu
- College of Food and Biological Engineering/Institute of Food Science and Engineering Technology, Hezhou University, Hezhou, 542899, China
| | - Yahua Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, Jiangsu, China.
| | - Zhugui Wen
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, 224002, Jiangsu, China.
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Marčiulynienė D, Marčiulynas A, Lynikienė J, Vaičiukynė M, Gedminas A, Menkis A. DNA-Metabarcoding of Belowground Fungal Communities in Bare-Root Forest Nurseries: Focus on Different Tree Species. Microorganisms 2021; 9:150. [PMID: 33440909 PMCID: PMC7827201 DOI: 10.3390/microorganisms9010150] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 12/29/2020] [Accepted: 01/08/2021] [Indexed: 11/20/2022] Open
Abstract
The production of tree seedlings in forest nurseries and their use in the replanting of clear-cut forest sites is a common practice in the temperate and boreal forests of Europe. Although conifers dominate on replanted sites, in recent years, deciduous tree species have received more attention due to their often-higher resilience to abiotic and biotic stress factors. The aim of the present study was to assess the belowground fungal communities of bare-root cultivated seedlings of Alnus glutinosa , Betula pendula, Pinus sylvestris, Picea abies and Quercus robur in order to gain a better understanding of the associated fungi and oomycetes, and their potential effects on the seedling performance in forest nurseries and after outplanting. The study sites were at the seven largest bare-root forest nurseries in Lithuania. The sampling included the roots and adjacent soil of 2-3 year old healthy-looking seedlings. Following the isolation of the DNA from the individual root and soil samples, these were amplified using ITS rRNA as a marker, and subjected to high-throughput PacBio sequencing. The results showed the presence of 161,302 high-quality sequences, representing 2003 fungal and oomycete taxa. The most common fungi were Malassezia restricta (6.7% of all of the high-quality sequences), Wilcoxina mikolae (5.0%), Pustularia sp. 3993_4 (4.6%), and Fusarium oxysporum (3.5%). The most common oomycetes were Pythium ultimum var. ultimum (0.6%), Pythium heterothallicum (0.3%), Pythium spiculum (0.3%), and Pythium sylvaticum (0.2%). The coniferous tree species (P. abies and P. sylvestris) generally showed a higher richness of fungal taxa and a rather distinct fungal community composition compared to the deciduous tree species (A. glutinosa, B. pendula , and Q. robur). The results demonstrated that the seedling roots and the rhizosphere soil in forest nurseries support a high richness of fungal taxa. The seedling roots were primarily inhabited by saprotrophic and mycorrhizal fungi, while fungal pathogens and oomycetes were less abundant, showing that the cultivation practices used in forest nurseries secured both the production of high-quality planting stock and disease control.
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Affiliation(s)
- Diana Marčiulynienė
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, LT-53101 Kaunas District, Lithuania; (A.M.); (J.L.); (M.V.); (A.G.)
| | - Adas Marčiulynas
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, LT-53101 Kaunas District, Lithuania; (A.M.); (J.L.); (M.V.); (A.G.)
| | - Jūratė Lynikienė
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, LT-53101 Kaunas District, Lithuania; (A.M.); (J.L.); (M.V.); (A.G.)
| | - Miglė Vaičiukynė
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, LT-53101 Kaunas District, Lithuania; (A.M.); (J.L.); (M.V.); (A.G.)
| | - Artūras Gedminas
- Institute of Forestry, Lithuanian Research Centre for Agriculture and Forestry, Liepų Str. 1, Girionys, LT-53101 Kaunas District, Lithuania; (A.M.); (J.L.); (M.V.); (A.G.)
| | - Audrius Menkis
- Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, P.O. Box 7026, SE-75007 Uppsala, Sweden;
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24
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Chen W, Koide RT, Eissenstat DM. Topographic and Host Effects on Arbuscular Mycorrhizal and Ectomycorrhizal Fungal Communities in a Forested Watershed. Ecosystems 2020. [DOI: 10.1007/s10021-020-00486-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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25
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Park KH, Oh SY, Yoo S, Fong JJ, Kim CS, Jo JW, Lim YW. Influence of Season and Soil Properties on Fungal Communities of Neighboring Climax Forests ( Carpinus cordata and Fraxinus rhynchophylla). Front Microbiol 2020; 11:572706. [PMID: 33193174 PMCID: PMC7655983 DOI: 10.3389/fmicb.2020.572706] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 09/30/2020] [Indexed: 11/13/2022] Open
Abstract
Trees in forest ecosystems constantly interact with the soil fungal community, and this interaction plays a key role in nutrient cycling. The diversity of soil fungal communities is affected by both environmental factors and host tree species. We investigated the influence of both of these factors by examining the total fungal communities in the rhizospheric soil of climax tree species that have similar ecological roles (Carpinus cordata, an ectomycorrhizal [ECM] tree, and Fraxinus rhynchophylla, an arbuscular mycorrhizal [AM] tree) in temperate forests with continental climates of Mt. Jeombong, South Korea. Fungal communities were assessed by Illumina-MiSeq sequencing the internal transcribed spacer (ITS) region of environmental DNA, and comparing their environmental factors (season and soil properties). We found that soil fungi of the two forest types differed in terms of community structure and ecological guild composition. The total fungal community composition changed significantly with seasons and soil properties in the F. rhynchophylla forest, but not in the C. cordata forest. However, potassium and carbon were significantly correlated with fungal diversity in both forests, and a positive correlation was found only between symbiotrophs of C. cordata and the carbon to nitrogen (C/N) ratio. Thus, the effects of environmental factors on soil fungal communities depended on the host trees, but some factors were common in both forests. Our results indicate that individual tree species should be considered when anticipating how the fungal communities will respond to environmental change.
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Affiliation(s)
- Ki Hyeong Park
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, South Korea
| | - Seung-Yoon Oh
- Department of Biology and Chemistry, Changwon National University, Changwon, South Korea
| | - Shinnam Yoo
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, South Korea
| | | | - Chang Sun Kim
- Forest Biodiversity Division, Korea National Arboretum, Pocheon, South Korea
| | - Jong Won Jo
- Forest Biodiversity Division, Korea National Arboretum, Pocheon, South Korea
| | - Young Woon Lim
- School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, South Korea
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26
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Rog I, Rosenstock NP, Körner C, Klein T. Share the wealth: Trees with greater ectomycorrhizal species overlap share more carbon. Mol Ecol 2020; 29:2321-2333. [PMID: 31923325 PMCID: PMC7116085 DOI: 10.1111/mec.15351] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 12/24/2019] [Accepted: 01/05/2020] [Indexed: 01/03/2023]
Abstract
The mutualistic symbiosis between forest trees and ectomycorrhizal fungi (EMF) is among the most ubiquitous and successful interactions in terrestrial ecosystems. Specific species of EMF are known to colonize specific tree species, benefitting from their carbon source, and in turn, improving their access to soil water and nutrients. EMF also form extensive mycelial networks that can link multiple root-tips of different trees. Yet the number of tree species connected by such mycelial networks, and the traffic of material across them, are just now under study. Recently we reported substantial belowground carbon transfer between Picea, Pinus, Larix and Fagus trees in a mature forest. Here, we analyze the EMF community of these same individual trees and identify the most likely taxa responsible for the observed carbon transfer. Among the nearly 1,200 EMF root-tips examined, 50%-70% belong to operational taxonomic units (OTUs) that were associated with three or four tree host species, and 90% of all OTUs were associated with at least two tree species. Sporocarp 13 C signals indicated that carbon originating from labelled Picea trees was transferred among trees through EMF networks. Interestingly, phylogenetically more closely related tree species exhibited more similar EMF communities and exchanged more carbon. Our results show that belowground carbon transfer is well orchestrated by the evolution of EMFs and tree symbiosis.
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Affiliation(s)
- Ido Rog
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | | | - Christian Körner
- Department of Environmental Sciences -Botany, University of Basel, Basel, Switzerland
| | - Tamir Klein
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
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27
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Nguyen DQ, Schneider D, Brinkmann N, Song B, Janz D, Schöning I, Daniel R, Pena R, Polle A. Soil and root nutrient chemistry structure root-associated fungal assemblages in temperate forests. Environ Microbiol 2020; 22:3081-3095. [PMID: 32383336 DOI: 10.1111/1462-2920.15037] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2018] [Revised: 04/19/2020] [Accepted: 04/21/2020] [Indexed: 12/12/2022]
Abstract
Root-associated fungi (RAF) link nutrient fluxes between soil and roots and thus play important roles in ecosystem functioning. To enhance our understanding of the factors that control RAF, we fitted statistical models to explain variation in RAF community structure using data from 150 temperate forest sites covering a broad range of environmental conditions and chemical root traits. We found that variation in RAF communities was related to both root traits (e.g., cations, carbohydrates, NO3 - ) and soil properties (pH, cations, moisture, C/N). The identified drivers were the combined result of distinct response patterns of fungal taxa (determined at the rank of orders) to biotic and abiotic factors. Our results support that RAF community variation is related to evolutionary adaptedness of fungal lineages and consequently, drivers of RAF communities are context-dependent.
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Affiliation(s)
- Dung Quang Nguyen
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany.,Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Duc Thang Ward, Bac Tu Liem District, Hanoi, Vietnam
| | - Dominik Schneider
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Grisebachstraße 8, 37077, Germany
| | - Nicole Brinkmann
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany
| | - Bin Song
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany
| | - Dennis Janz
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany
| | - Ingo Schöning
- Biogeochemical Processes, Max Planck Institute for Biogeochemistry, Hans-Knöll-Str. 10, 07745 Jena, Germany
| | - Rolf Daniel
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Göttingen, Göttingen, Grisebachstraße 8, 37077, Germany
| | - Rodica Pena
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, Büsgen-Institut, University of Göttingen, Göttingen, Büsgenweg 2, 37077, Germany
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28
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Plasticity of Root Traits under Competition for a Nutrient-Rich Patch Depends on Tree Species and Possesses a Large Congruency between Intra- and Interspecific Situations. FORESTS 2020. [DOI: 10.3390/f11050528] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Belowground competition is an important structuring force in terrestrial plant communities. Uncertainties remain about the plasticity of functional root traits under competition, especially comparing interspecific vs. intraspecific situations. This study addresses the plasticity of fine root traits of competing Acer pseudoplatanus L. and Fagus sylvatica L. seedlings in nutrient-rich soil patches. Seedlings’ roots were grown in a competition chamber experiment in which root growth (biomass), morphological and architectural fine roots traits, and potential activities of four extracellular enzymes were analyzed. Competition chambers with one, two conspecific, or two allospecific roots were established, and fertilized to create a nutrient ‘hotspot’. Interspecific competition significantly reduced fine root growth in Fagus only, while intraspecific competition had no significant effect on the fine root biomass of either species. Competition reduced root nitrogen concentration and specific root respiration of both species. Potential extracellular enzymatic activities of β-glucosidase (BG) and N-acetyl-glucosaminidase (NAG) were lower in ectomycorrhizal Fagus roots competing with Acer. Acer fine roots had greater diameter and tip densities under intraspecific competition. Fagus root traits were generally more plastic than those of Acer, but no differences in trait plasticity were found between competitive situations. Compared to Acer, Fagus roots possessed a greater plasticity of all studied traits but coarse root biomass. However, this high plasticity did not result in directed trait value changes under interspecific competition, but Fagus roots grew less and realized lower N concentrations in comparison to competing Acer roots. The plasticity of root traits of both species was thus found to be highly species- but not competitor-specific. By showing that both con- and allospecific roots had similar effects on target root growth and most trait values, our data sheds light on the paradigm that the intensity of intraspecific competition is greater than those of interspecific competition belowground.
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29
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Ectomycorrhizal fungi of exotic Carya ovata in the context of surrounding native forests on Central European sites. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2019.100908] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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30
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Cobley LAE, Pataki DE. Vehicle emissions and fertilizer impact the leaf chemistry of urban trees in Salt Lake Valley, UT. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 254:112984. [PMID: 31401524 DOI: 10.1016/j.envpol.2019.112984] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Revised: 07/18/2019] [Accepted: 07/29/2019] [Indexed: 06/10/2023]
Abstract
The urban nitrogen (N) and carbon (C) cycles are substantially influenced by human activity. Alterations to these cycles include increased inputs from fossil fuel combustion and fertilizer use. The leaf chemistry of urban trees can be used to distinguish between these different N and C sources. Here, we evaluated relationships between urban vegetation and different N and C sources in street and residential trees in the Salt Lake Valley, Utah. We tested three hypotheses: 1) unfertilized street trees on high traffic density roads will have higher leaf %N, more enriched δ15N and more depleted δ13C than unfertilized street trees on low traffic density roads; 2) trees in high income residential neighborhoods will have higher leaf %N, more depleted δ15N and more enriched δ13C than trees in lower income neighborhoods; and 3) unfertilized street trees will have lower leaf %N, more enriched δ15N and more depleted δ13C than fertilized residential trees. Leaf δ15N was more enriched near high traffic density roads for one study species. However, street tree δ15N and δ13C were largely influenced by vehicle emissions from primary and secondary roads within 1000 m radius rather than the immediately adjacent road. Leaf δ13C was correlated with neighborhood income, although this relationship may be the result of variations in irrigation practices rather than variations in C sources. Finally, unfertilized trees in downtown Salt Lake had lower leaf %N, more enriched δ15N and more depleted δ13C than fertilized trees. These results highlight that urban trees can serve as biomonitors of the environment. Moreover, they emphasize that roads can have large spatial footprints and that the leaf chemistry of urban vegetation may be influenced by the spatial patterns in roads and road densities at the landscape scale.
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Affiliation(s)
- L A E Cobley
- School of Biological Sciences, University of Utah, Salt Lake City, UT, USA.
| | - D E Pataki
- School of Biological Sciences, University of Utah, Salt Lake City, UT, USA
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31
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Wang P, Chen Y, Sun Y, Tan S, Zhang S, Wang Z, Zhou J, Zhang G, Shu W, Luo C, Kuang J. Distinct Biogeography of Different Fungal Guilds and Their Associations With Plant Species Richness in Forest Ecosystems. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00216] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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Chen L, Xiang W, Wu H, Ouyang S, Lei P, Hu Y, Ge T, Ye J, Kuzyakov Y. Contrasting patterns and drivers of soil fungal communities in subtropical deciduous and evergreen broadleaved forests. Appl Microbiol Biotechnol 2019; 103:5421-5433. [PMID: 31073876 DOI: 10.1007/s00253-019-09867-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Revised: 04/14/2019] [Accepted: 04/15/2019] [Indexed: 12/24/2022]
Abstract
Subtropical broadleaved forests play a crucial role in supporting terrestrial ecosystem functions, but little is known about their belowground soil fungal communities despite that they have central functions in C, N, and P cycles. This study investigated the structures and identified the drivers of soil fungal communities in subtropical deciduous and evergreen broadleaved forests, using high-throughput sequencing and FUNGuild for fungal identification and assignment to the trophic guild. Fungal richness was much higher in the deciduous than in the evergreen forest. Both forests were dominated by Ascomycota and Basidiomycota phyla, but saprophytic fungi were more abundant in the deciduous forest and ectomycorrhizal fungi predominated in the evergreen forest. Fungal communities had strong links to plant and soil properties. Specifically, plant diversity and litter biomass were the main aboveground drivers of fungal diversity and composition in the deciduous forest, while host effects were prominent in the evergreen forest. The belowground factors, i.e., soil pH, water content, and nutrients especially available P, were identified as the primary drivers of soil fungal communities in the broadleaved forests. Co-occurrence network analysis revealed assembly of fungal composition in broadleaved forest soils was non-random. The smaller modularity of the network in the deciduous forest reflects lower resistance to environment changes. Concluding, these results showed that plant community attributes, soil properties, and potential interactions among fungal functional guilds operate jointly on the divergence of soil fungal community assembly in the two broadleaved forest types.
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Affiliation(s)
- Liang Chen
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China.,Huitong National Station for Scientific Observation and Research of Chinese Fir Plantation Ecosystems in Hunan Province, Huitong, Huaihua, 438107, Hunan, China
| | - Wenhua Xiang
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China. .,Huitong National Station for Scientific Observation and Research of Chinese Fir Plantation Ecosystems in Hunan Province, Huitong, Huaihua, 438107, Hunan, China.
| | - Huili Wu
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China.,Huitong National Station for Scientific Observation and Research of Chinese Fir Plantation Ecosystems in Hunan Province, Huitong, Huaihua, 438107, Hunan, China
| | - Shuai Ouyang
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China.,Huitong National Station for Scientific Observation and Research of Chinese Fir Plantation Ecosystems in Hunan Province, Huitong, Huaihua, 438107, Hunan, China
| | - Pifeng Lei
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China.,Huitong National Station for Scientific Observation and Research of Chinese Fir Plantation Ecosystems in Hunan Province, Huitong, Huaihua, 438107, Hunan, China
| | - Yajun Hu
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, 410125, Hunan, China
| | - Tida Ge
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, 410125, Hunan, China
| | - Jun Ye
- Australian Centre for Ecogenomics, The University of Queensland, QLD, St. Lucia, 4072, Australia
| | - Yakov Kuzyakov
- Faculty of Life Science and Technology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, China.,Department of Soil Science of Temperate Ecosystems, Department of Agricultural Soil Science, University of Goettingen, 37077, Göttingen, Germany.,Institute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Pushchino, 142290, Russia
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33
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Bluhm SL, Eitzinger B, Ferlian O, Bluhm C, Schröter K, Pena R, Maraun M, Scheu S. Deprivation of root-derived resources affects microbial biomass but not community structure in litter and soil. PLoS One 2019; 14:e0214233. [PMID: 30921392 PMCID: PMC6438447 DOI: 10.1371/journal.pone.0214233] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 03/08/2019] [Indexed: 11/19/2022] Open
Abstract
The input of plant leaf litter has been assumed to be the most important resource for soil organisms of forest ecosystems, but there is increasing evidence that root-derived resources may be more important. By trenching roots of trees in deciduous and coniferous forests, we cut-off the input of root-derived resources and investigated the response of microorganisms using substrate-induced respiration and phospholipid fatty acid (PLFA) analysis. After one and three years, root trenching strongly decreased microbial biomass and concentrations of PLFAs by about 20%, but the microbial community structure was little affected and the effects were similar in deciduous and coniferous forests. However, the reduction in microbial biomass varied between regions and was more pronounced in forests on limestone soils (Hainich) than in those on sandy soils (Schorfheide). Trenching also reduced microbial biomass in the litter layer but only in the Hainich after one year, whereas fungal and bacterial marker PLFAs as well as the fungal-to-plant marker ratio in litter were reduced in the Schorfheide both after one and three years. The pronounced differences between forests of the two regions suggest that root-derived resources are more important in fueling soil microorganisms of base-rich forests characterized by mull humus than in forests poor in base cations characterized by moder soils. The reduction in microbial biomass and changes in microbial community characteristics in the litter layer suggests that litter microorganisms do not exclusively rely on resources from decomposing litter but also from roots, i.e. from resources based on labile recently fixed carbon. Our results suggest that both bacteria and fungi heavily depend on root-derived resources with both suffering to a similar extent to deprivation of these resources. Further, the results indicate that the community structure of microorganisms is remarkably resistant to changes in resource supply and adapts quickly to new conditions irrespective of tree species composition and forest management.
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Affiliation(s)
- Sarah L. Bluhm
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
| | - Bernhard Eitzinger
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
| | - Olga Ferlian
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
| | - Christian Bluhm
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
| | - Kristina Schröter
- University of Göttingen, Büsgen Institute, Forest Botany and Tree Physiology, Büsgenweg 2, Göttingen, Germany
| | - Rodica Pena
- University of Göttingen, Büsgen Institute, Forest Botany and Tree Physiology, Büsgenweg 2, Göttingen, Germany
| | - Mark Maraun
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
| | - Stefan Scheu
- University of Göttingen, J.F. Blumenbach Institute of Zoology and Anthropology, Animal Ecology, Untere Karspüle 2, Göttingen, Germany
- University of Göttingen, Centre of Biodiversity and Sustainable Land Use, Göttingen, Germany
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Four new species of Hydnobolites (sequestrate Pezizaceae, Ascomycota) from China. Mycol Prog 2019. [DOI: 10.1007/s11557-018-01465-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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35
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Forest Tree Microbiomes and Associated Fungal Endophytes: Functional Roles and Impact on Forest Health. FORESTS 2019. [DOI: 10.3390/f10010042] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Terrestrial plants including forest trees are generally known to live in close association with microbial organisms. The inherent features of this close association can be commensalism, parasitism or mutualism. The term “microbiota” has been used to describe this ecological community of plant-associated pathogenic, mutualistic, endophytic and commensal microorganisms. Many of these microbiota inhabiting forest trees could have a potential impact on the health of, and disease progression in, forest biomes. Comparatively, studies on forest tree microbiomes and their roles in mutualism and disease lag far behind parallel work on crop and human microbiome projects. Very recently, our understanding of plant and tree microbiomes has been enriched due to novel technological advances using metabarcoding, metagenomics, metatranscriptomics and metaproteomics approaches. In addition, the availability of massive DNA databases (e.g., NCBI (USA), EMBL (Europe), DDBJ (Japan), UNITE (Estonia)) as well as powerful computational and bioinformatics tools has helped to facilitate data mining by researchers across diverse disciplines. Available data demonstrate that plant phyllosphere bacterial communities are dominated by members of only a few phyla (Proteobacteria, Actinobacteria, Bacteroidetes). In bulk forest soil, the dominant fungal group is Basidiomycota, whereas Ascomycota is the most prevalent group within plant tissues. The current challenge, however, is how to harness and link the acquired knowledge on microbiomes for translational forest management. Among tree-associated microorganisms, endophytic fungal biota are attracting a lot of attention for their beneficial health- and growth-promoting effects, and were preferentially discussed in this review.
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Maes SL, Perring MP, Vanhellemont M, Depauw L, Van den Bulcke J, Brūmelis G, Brunet J, Decocq G, den Ouden J, Härdtle W, Hédl R, Heinken T, Heinrichs S, Jaroszewicz B, Kopecký M, Máliš F, Wulf M, Verheyen K. Environmental drivers interactively affect individual tree growth across temperate European forests. GLOBAL CHANGE BIOLOGY 2019; 25:201-217. [PMID: 30346104 DOI: 10.1111/gcb.14493] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Revised: 09/26/2018] [Accepted: 10/11/2018] [Indexed: 05/25/2023]
Abstract
Forecasting the growth of tree species to future environmental changes requires a better understanding of its determinants. Tree growth is known to respond to global-change drivers such as climate change or atmospheric deposition, as well as to local land-use drivers such as forest management. Yet, large geographical scale studies examining interactive growth responses to multiple global-change drivers are relatively scarce and rarely consider management effects. Here, we assessed the interactive effects of three global-change drivers (temperature, precipitation and nitrogen deposition) on individual tree growth of three study species (Quercus robur/petraea, Fagus sylvatica and Fraxinus excelsior). We sampled trees along spatial environmental gradients across Europe and accounted for the effects of management for Quercus. We collected increment cores from 267 trees distributed over 151 plots in 19 forest regions and characterized their neighbouring environment to take into account potentially confounding factors such as tree size, competition, soil conditions and elevation. We demonstrate that growth responds interactively to global-change drivers, with species-specific sensitivities to the combined factors. Simultaneously high levels of precipitation and deposition benefited Fraxinus, but negatively affected Quercus' growth, highlighting species-specific interactive tree growth responses to combined drivers. For Fagus, a stronger growth response to higher temperatures was found when precipitation was also higher, illustrating the potential negative effects of drought stress under warming for this species. Furthermore, we show that past forest management can modulate the effects of changing temperatures on Quercus' growth; individuals in plots with a coppicing history showed stronger growth responses to higher temperatures. Overall, our findings highlight how tree growth can be interactively determined by global-change drivers, and how these growth responses might be modulated by past forest management. By showing future growth changes for scenarios of environmental change, we stress the importance of considering multiple drivers, including past management and their interactions, when predicting tree growth.
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Affiliation(s)
- Sybryn L Maes
- Forest & Nature Lab, Department of Environment, Ghent University, Melle-Gontrode, Belgium
| | - Michael P Perring
- Forest & Nature Lab, Department of Environment, Ghent University, Melle-Gontrode, Belgium
- School of Biological Sciences, The University of Western Australia, Crawley, Western Australia, Australia
| | - Margot Vanhellemont
- Forest & Nature Lab, Department of Environment, Ghent University, Melle-Gontrode, Belgium
| | - Leen Depauw
- Forest & Nature Lab, Department of Environment, Ghent University, Melle-Gontrode, Belgium
| | - Jan Van den Bulcke
- UGCT - UGent-Woodlab, Laboratory of Wood Technology, Department of Environment, Ghent University, Gent, Belgium
| | | | - Jörg Brunet
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Guillaume Decocq
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR 7058 CNRS), Jules Verne University of Picardie, Amiens Cedex 1, France
| | - Jan den Ouden
- Forest Ecology and Forest Management Group, Wageningen University, Wageningen, The Netherlands
| | - Werner Härdtle
- Institute of Ecology, Leuphana University of Lüneburg, Lüneburg, Germany
| | - Radim Hédl
- Institute of Botany, Czech Academy of Sciences, Brno, Czech Republic
- Department of Botany, Faculty of Science, Palacký University in Olomouc, Olomouc, Czech Republic
| | - Thilo Heinken
- General Botany, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Steffi Heinrichs
- Silviculture and Forest Ecology of the Temperate Zones, University of Göttingen, Göttingen, Germany
| | - Bogdan Jaroszewicz
- Białowieża Geobotanical Station, Faculty of Biology, University of Warsaw, Białowieża, Poland
| | - Martin Kopecký
- Institute of Botany, Czech Academy of Sciences, Průhonice, Czech Republic
- Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Czech Republic
| | - František Máliš
- Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovakia
- National Forest Centre, Zvolen, Slovakia
| | - Monika Wulf
- Leibniz-ZALF e.V. Müncheberg, Müncheberg, Germany
| | - Kris Verheyen
- Forest & Nature Lab, Department of Environment, Ghent University, Melle-Gontrode, Belgium
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37
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Schröter K, Wemheuer B, Pena R, Schöning I, Ehbrecht M, Schall P, Ammer C, Daniel R, Polle A. Assembly processes of trophic guilds in the root mycobiome of temperate forests. Mol Ecol 2018; 28:348-364. [PMID: 30276908 DOI: 10.1111/mec.14887] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 09/05/2018] [Accepted: 09/17/2018] [Indexed: 01/09/2023]
Abstract
Root-associated mycobiomes (RAMs) link plant and soil ecological processes, thereby supporting ecosystem functions. Understanding the forces that govern the assembly of RAMs is key to sustainable ecosystem management. Here, we dissected RAMs according to functional guilds and combined phylogenetic and multivariate analyses to distinguish and quantify the forces driving RAM assembly processes. Across large biogeographic scales (>1,000 km) in temperate forests (>100 plots), RAMs were taxonomically highly distinct but composed of a stable trophic structure encompassing symbiotrophic, ectomycorrhizal (55%), saprotrophic (7%), endotrophic (3%) and pathotrophic fungi (<1%). Taxonomic community composition of RAMs is explained by abiotic factors, forest management intensity, dominant tree family (Fagaceae, Pinaceae) and root resource traits. Local RAM assemblies are phylogenetically clustered, indicating stronger habitat filtering on roots in dry, acid soils and in conifer stands than in other forest types. The local assembly of ectomycorrhizal communities is driven by forest management intensity. At larger scales, root resource traits and soil pH shift the assembly process of ectomycorrhizal fungi from deterministic to neutral. Neutral or weak deterministic assembly processes are prevalent in saprotrophic and endophytic guilds. The remarkable consistency of the trophic composition of the RAMs suggests that temperate forests attract fungal assemblages that afford functional resilience under the current range of climatic and edaphic conditions. At local scales, the filtering processes that structure symbiotrophic assemblies can be influenced by forest management and tree selection, but at larger scales, environmental cues and host resource traits are the most prevalent forces.
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Affiliation(s)
- Kristina Schröter
- Forest Botany and Tree Physiology, University of Goettingen, Göttingen, Germany
| | - Bernd Wemheuer
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Goettingen, Göttingen, Germany.,Centre for Marine Bio-Innovation, School of Biological Earth and Environmental Sciences, The University of New South Wales, Sydney, NSW, Australia
| | - Rodica Pena
- Forest Botany and Tree Physiology, University of Goettingen, Göttingen, Germany
| | - Ingo Schöning
- Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Martin Ehbrecht
- Silviculture and Forest Ecology of the Temperate Zones, University of Goettingen, Göttingen, Germany
| | - Peter Schall
- Silviculture and Forest Ecology of the Temperate Zones, University of Goettingen, Göttingen, Germany
| | - Christian Ammer
- Silviculture and Forest Ecology of the Temperate Zones, University of Goettingen, Göttingen, Germany
| | - Rolf Daniel
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, University of Goettingen, Göttingen, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Goettingen, Göttingen, Germany
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38
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Fruleux A, Bogeat-Triboulot MB, Collet C, Deveau A, Saint-André L, Santenoise P, Bonal D. Aboveground overyielding in a mixed temperate forest is not explained by belowground processes. Oecologia 2018; 188:1183-1193. [PMID: 30357528 DOI: 10.1007/s00442-018-4278-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 10/13/2018] [Indexed: 11/30/2022]
Abstract
The relationship between forest productivity and tree species diversity has been described in detail, but the underlying processes have yet to be identified. One important issue is to understand which processes are at the origin of observed aboveground overyielding in some mixed forests. We used a beech-maple plantation exhibiting aboveground overyielding to test whether belowground processes could explain this pattern. Soil cores were collected to determine fine root (FR) biomass and vertical distribution. Correlograms were used to detect spatial arrangement. Near-infrared reflectance spectroscopy was used to identify the tree species proportion in the FR samples and spatial root segregation. An isotopic approach was used to identify water acquisition patterns. The structure and the composition of the ectomycorrhizal fungal community were determined by high-throughput sequencing of DNA in the soil samples. We found no spatial pattern for FR biomass or for its vertical distribution along the gradients. No vertical root segregation was found, as FR density for both species decreased with depth in a similar way. The two species displayed similar vertical water acquisition profiles as well, mainly absorbing water from shallow soil layers; hence, niche differentiation for water acquisition was not highlighted here. Significant alterations in the fungal community compositions were detected in function of the percentage of maple in the vicinity of beech. Our findings do not support the commonly suggested drivers of aboveground overyielding in species-diverse forests and suggest that competition reduction or between-species facilitation of belowground resource acquisition may not explain the observed aboveground overyielding.
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Affiliation(s)
- Alexandre Fruleux
- Université de Lorraine, AgroParisTech, INRA, UMR Silva, 54000, Nancy, France.
| | | | - Catherine Collet
- Université de Lorraine, AgroParisTech, INRA, UMR Silva, 54000, Nancy, France
| | - Aurélie Deveau
- Université de Lorraine, INRA, UMR IAM, 54280, Champenoux, France
| | | | - Philippe Santenoise
- Université de Lorraine, AgroParisTech, INRA, UMR Silva, 54000, Nancy, France.,INRA, UR BEF, 54280, Champenoux, France
| | - Damien Bonal
- Université de Lorraine, AgroParisTech, INRA, UMR Silva, 54000, Nancy, France
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Manzanedo RD, Schanz FR, Fischer M, Allan E. Fagus sylvatica seedlings show provenance differentiation rather than adaptation to soil in a transplant experiment. BMC Ecol 2018; 18:42. [PMID: 30285730 PMCID: PMC6171197 DOI: 10.1186/s12898-018-0197-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 09/26/2018] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Understanding and predicting the response of tree populations to climate change requires understanding the pattern and scale of their adaptation. Climate is often considered the major driver of local adaptation but, although biotic factors such as soil pathogens or mutualists could be as important, their role has typically been neglected. Biotic drivers might also interact with climate to affect performance and mycorrhizae, in particular, are likely to play a key role in determining drought resistance, which is important in the context of adaptation to future environmental change. To address these questions, we performed a fully reciprocal soil-plant transplant experiment using Fagus sylvatica seedlings and soils from three regions in Germany. To separate the biotic and abiotic effects of inoculation, half of the plants were inoculated with natural soil from the different origins, while the rest were grown on sterilized substrate. We also imposed a drought stress treatment to test for interactions between soil biota and climate. After 1 year of growth, we measured aboveground biomass of all seedlings, and quantified mycorrhizal colonization for a subset of the seedlings, which included all soil-plant combinations, to disentangle the effect of mycorrhiza from other agents. RESULTS We found that plant origin had the strongest effect on plant performance, but this interacted with soil origin. In general, trees showed a slight tendency to produce less aboveground biomass on local soils, suggesting soil antagonists could be causing trees to be maladapted to their local soils. Consistently, we found lower mycorrhizal colonization rate under local soil conditions. Across all soils, seedlings from low elevations produced more annual biomass than middle (+ 290%) and high (+ 97%) elevations. Interestingly, mycorrhizal colonization increased with drought in the two provenances that showed higher drought tolerance, which supports previous results showing that mycorrhizae can increase drought resistance. CONCLUSIONS Our findings suggest that soil communities play a role in affecting early performance of temperate trees, although this role may be smaller than that of seed origin. Also, other effects, such as the positive response to generalists or negative interactions with soil biota may be as important as the highly specialized mycorrhizal associations.
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Affiliation(s)
- R. D. Manzanedo
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland
| | - F. R. Schanz
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland
| | - M. Fischer
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland
| | - E. Allan
- Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland
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40
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Scott N, Pec GJ, Karst J, Landhäusser SM. Additive or synergistic? Early ectomycorrhizal fungal community response to mixed tree plantings in boreal forest reclamation. Oecologia 2018; 189:9-19. [PMID: 30094634 DOI: 10.1007/s00442-018-4241-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Accepted: 07/18/2018] [Indexed: 12/11/2022]
Abstract
Ectomycorrhizal fungi are an important component to ecosystem function in the boreal forest. Underlying factors influencing fungal community composition and richness, such as host identity and soil type have been studied, but interactions between these factors have been less explored. Furthermore, mixed-species stands may have additive or synergistic effects on ectomycorrhizal fungi species richness, but this effect is challenging to test on natural sites due to difficulty in finding monospecific and mixed-species stands with similar site conditions and history. Forest reclamation areas can provide an opportunity to explore some of these fundamental questions, as site conditions and history are often known and managed, with the added benefit that knowledge emerging from these studies can be used to evaluate the recovery of degraded forest landscapes. Here, we compared the richness and composition of ectomycorrhizal fungi in young single- and mixed-species stands established on a reclamation area designed to inform strategies to restore upland boreal forests disturbed by oil sands mining. Seedlings of three host tree species (Populus tremuloides, Pinus banksiana, Picea glauca) were planted in single- and mixed-species stands on three different salvaged soils (forest floor material, peat, subsoil). After four growing seasons, there was no difference in total ectomycorrhizal fungi species richness and composition in mixed- versus combined single-species stands indicating that an additive effect of host tree species prevailed early in development. However, there were compositional shifts in fungal communities across both the host tree species and the salvaged soil type, with soil type being the strongest driver.
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Affiliation(s)
- Natalie Scott
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, AB, T6G 2E3, Canada.
| | - Gregory J Pec
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, AB, T6G 2E3, Canada
| | - Justine Karst
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, AB, T6G 2E3, Canada
| | - Simon M Landhäusser
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, AB, T6G 2E3, Canada
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41
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Lu X, Steffen K, Yuan HS. Morphological and molecular identification of three new species of Tomentella from Finland. Mycologia 2018; 110:677-691. [PMID: 30081774 DOI: 10.1080/00275514.2018.1474683] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Abstract
Three new species of Tomentella (Thelephorales) from Finland, T. globosa, T. lammiensis, and T. longisterigmata, are described and illustrated with morphological characteristics and nuc rDNA ITS1-5.8S-ITS2 sequences. T. globosa is characterized by mucedinoid, pale to dark brown basidiocarps adherent to the substrate, generative hyphae with clamps and rarely with simple septa, and echinulate, globose basidiospores (echinuli up to 1.5 μm long). T. lammiensis is characterized by mucedinoid, oxide yellow to golden brown basidiocarps adherent to the substrate, generative hyphae with clamps and rarely with simple septa, and echinulate, ellipsoid, triangular, or lobbed basidiospores (echinuli up to 2 μm long). T. longisterigmata is characterized by mucedinoid, dark brown to chestnut basidiocarps separable from the substrate, generative hyphae clamped and rarely with simple septa, the long basidial sterigmata (7-11 μm long), and echinulate, globose basidiospores (echinuli up to 2 μm long). An absence of rhizomorphs and cystidia is their common morphological feature. Molecular analyses by maximum likelihood, maximum parsimony, and Bayesian analyses confirm the phylogenetic position of these three new species. The discriminating characters of these new species and their closely related species are discussed in this study, and a key to the species from Finland is provided.
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Affiliation(s)
- Xu Lu
- a CAS Key Laboratory of Forest Ecology, Institute of Applied Ecology, Chinese Academy of Sciences , Shenyang 110164 , People's Republic of China.,b University of the Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Kari Steffen
- c Department of Environmental Sciences , Section of Environmental Ecology , Niemenkatu 73, 15100 Lahti , Finland
| | - Hai-Sheng Yuan
- a CAS Key Laboratory of Forest Ecology, Institute of Applied Ecology, Chinese Academy of Sciences , Shenyang 110164 , People's Republic of China
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42
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DNA analysis reveals rich diversity of Hydnotrya with emphasis on the species found in China. Mycol Prog 2018. [DOI: 10.1007/s11557-018-1425-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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43
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Rudawska M, Leski T, Wilgan R, Karliński L, Kujawska M, Janowski D. Mycorrhizal associations of the exotic hickory trees, Carya laciniosa and Carya cordiformis, grown in Kórnik Arboretum in Poland. MYCORRHIZA 2018; 28:549-560. [PMID: 29934745 PMCID: PMC6182374 DOI: 10.1007/s00572-018-0846-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 06/14/2018] [Indexed: 06/08/2023]
Abstract
We studied mycorrhizal associations of North American Carya laciniosa and Carya cordiformis trees, successfully acclimated to local habitat conditions of the historic Kórnik Arboretum in Poland, in order to better understand mycorrhizal host range extensions in new environments. The root systems of Carya seedlings (1-3 years old), regenerated under a canopy of mature hickory trees, were analyzed using microscopic, morphological, and molecular techniques. Our results, for the first time, indicate that C. laciniosa and C. cordiformis have both arbuscular and ectomycorrhizal associations. In the cleared and stained roots of both Carya species, typical structures of arbuscular mycorrhizae (vesicles, arbuscules, hyphal coils, and intercellular nonseptate hyphae) were detected. On the basis of ITS rDNA sequencing, 40 ectomycorrhizal fungal taxa were revealed, with 25 on C. laciniosa and 19 on C. cordiformis. Only four fungal species (Cenococcum geophilum sensu lato, Russula recondita, Xerocomellus cisalpinus, Humaria hemisphaerica) were shared by both Carya species. The high number of infrequent fungal taxa found, as well as the calculated richness estimator, indicates that the real ectomycorrhizal community of C. laciniosa and C. cordiformis is probably richer. The ability of the exotic Carya species to form arbuscular and ectomycorrhizal linkages with native fungi could be a factor in the successful establishment of these tree species under the conditions of Kórnik Arboretum.
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Affiliation(s)
- Maria Rudawska
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland.
| | - Tomasz Leski
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland
| | - Robin Wilgan
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland
| | - Leszek Karliński
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland
| | - Marta Kujawska
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland
| | - Daniel Janowski
- Laboratory of Symbiotic Associations, Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035, Kórnik, Poland
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44
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Ferlian O, Cesarz S, Craven D, Hines J, Barry KE, Bruelheide H, Buscot F, Haider S, Heklau H, Herrmann S, Kühn P, Pruschitzki U, Schädler M, Wagg C, Weigelt A, Wubet T, Eisenhauer N. Mycorrhiza in tree diversity-ecosystem function relationships: conceptual framework and experimental implementation. Ecosphere 2018; 9:e02226. [PMID: 30323959 PMCID: PMC6186167 DOI: 10.1002/ecs2.2226] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Accepted: 04/16/2018] [Indexed: 12/28/2022] Open
Abstract
The widely observed positive relationship between plant diversity and ecosystem functioning is thought to be substantially driven by complementary resource use of plant species. Recent work suggests that biotic interactions among plants and between plants and soil organisms drive key aspects of resource use complementarity. Here, we provide a conceptual framework for integrating positive biotic interactions across guilds of organisms, more specifically between plants and mycorrhizal types, to explain resource use complementarity in plants and its consequences for plant competition. Our overarching hypothesis is that ecosystem functioning increases when more plant species associate with functionally dissimilar mycorrhizal fungi because differing mycorrhizal types will increase coverage of habitat space for and reduce competition among plants. We introduce a recently established field experiment (MyDiv) that uses different pools of tree species that associate with either arbuscular or ectomycorrhizal fungi to create orthogonal experimental gradients in tree species richness and mycorrhizal associations and present initial results. Finally, we discuss options for future mechanistic studies on resource use complementarity within MyDiv. We show how mycorrhizal types and biotic interactions in MyDiv can be used in the future to test novel questions regarding the mechanisms underlying biodiversity-ecosystem function relationships.
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Affiliation(s)
- Olga Ferlian
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - Simone Cesarz
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - Dylan Craven
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Department of Community Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Straße 4, 06120 Halle (Saale), Germany
| | - Jes Hines
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - Kathryn E. Barry
- Institute of Biology, Leipzig University, Johannisallee 21-23, 04103 Leipzig, Germany
| | - Helge Bruelheide
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany
| | - François Buscot
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Straße 4, 06120 Halle (Saale), Germany
| | - Sylvia Haider
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany
| | - Heike Heklau
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany
| | - Sylvie Herrmann
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Straße 4, 06120 Halle (Saale), Germany
| | - Paul Kühn
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Am Kirchtor 1, 06108 Halle (Saale), Germany
| | - Ulrich Pruschitzki
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - Martin Schädler
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Department of Community Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Straße 4, 06120 Halle (Saale), Germany
| | - Cameron Wagg
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Winterthurerstraße 190, 8057 Zürich, Switzerland
| | - Alexandra Weigelt
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Johannisallee 21-23, 04103 Leipzig, Germany
| | - Tesfaye Wubet
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Department of Soil Ecology, Helmholtz Centre for Environmental Research – UFZ, Theodor-Lieser-Straße 4, 06120 Halle (Saale), Germany
| | - Nico Eisenhauer
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- Institute of Biology, Leipzig University, Deutscher Platz 5e, 04103 Leipzig, Germany
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Erlandson S, Wei X, Savage J, Cavender-Bares J, Peay K. Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure. Mol Ecol 2018; 27:2007-2024. [PMID: 29603835 DOI: 10.1111/mec.14576] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Accepted: 03/21/2018] [Indexed: 01/03/2023]
Abstract
Predicting the outcome of interspecific interactions is a central goal in ecology. The diverse soil microbes that interact with plants are shaped by different aspects of plant identity, such as phylogenetic history and functional group. Species interactions may also be strongly shaped by abiotic environment, but there is mixed evidence on the relative importance of environment, plant identity and their interactions in shaping soil microbial communities. Using a multifactor, split-plot field experiment, we tested how hydrologic context, and three facets of Salicaceae plant identity-habitat specialization, phylogenetic distance and species identity-influence soil microbial community structure. Analysis of microbial community sequencing data with generalized dissimilarity models showed that abiotic environment explained up to 25% of variation in community composition of soil bacteria, fungi and archaea, while Salicaceae identity influenced <1% of the variation in community composition of soil microbial taxa. Multivariate linear models indicated that the influence of Salicaceae identity was small, but did contribute to differentiation of soil microbes within treatments. Moreover, results from a microbial niche breadth analysis show that soil microbes in wetlands have more specialized host associations than soil microbes in drier environments-showing that abiotic environment changed how plant identity correlated with soil microbial communities. This study demonstrates the predominance of major abiotic factors in shaping soil microbial community structure; the significance of abiotic context to biotic influence on soil microbes; and the utility of field experiments to disentangling the abiotic and biotic factors that are thought to be most essential for soil microbial communities.
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Affiliation(s)
- Sonya Erlandson
- Department of Biology, Stanford University, Stanford, CA, USA
| | - Xiaojing Wei
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, USA
| | - Jessica Savage
- Department of Biology, University of Minnesota, Duluth, MN, USA
| | | | - Kabir Peay
- Department of Biology, Stanford University, Stanford, CA, USA
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Zavišić A, Yang N, Marhan S, Kandeler E, Polle A. Forest Soil Phosphorus Resources and Fertilization Affect Ectomycorrhizal Community Composition, Beech P Uptake Efficiency, and Photosynthesis. FRONTIERS IN PLANT SCIENCE 2018; 9:463. [PMID: 29706979 PMCID: PMC5908982 DOI: 10.3389/fpls.2018.00463] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 03/23/2018] [Indexed: 05/27/2023]
Abstract
Phosphorus (P) is an important nutrient, whose plant-available form phosphate is often low in natural forest ecosystems. Mycorrhizal fungi mine the soil for P and supply their host with this resource. It is unknown how ectomycorrhizal communities respond to changes in P availability. Here, we used young beech (Fagus sylvatica L.) trees in natural forest soil from a P-rich and P-poor site to investigate the impact of P amendment on soil microbes, mycorrhizas, beech P nutrition, and photosynthesis. We hypothesized that addition of P to forest soil increased P availability, thereby, leading to enhanced microbial biomass and mycorrhizal diversity in P-poor but not in P-rich soil. We expected that P amendment resulted in increased plant P uptake and enhanced photosynthesis in both soil types. Young beech trees with intact soil cores from a P-rich and a P-poor forest were kept in a common garden experiment and supplied once in fall with triple superphosphate. In the following summer, labile P in the organic layer, but not in the mineral top soil, was significantly increased in response to fertilizer treatment. P-rich soil contained higher microbial biomass than P-poor soil. P treatment had no effect on microbial biomass but influenced the mycorrhizal communities in P-poor soil and shifted their composition toward higher similarities to those in P-rich soil. Plant uptake efficiency was negatively correlated with the diversity of mycorrhizal communities and highest for trees in P-poor soil and lowest for fertilized trees. In both soil types, radioactive P tracing (H333PO4) revealed preferential aboveground allocation of new P in fertilized trees, resulting in increased bound P in xylem tissue and enhanced soluble P in bark, indicating increased storage and transport. Fertilized beeches from P-poor soil showed a strong increase in leaf P concentrations from deficient to luxurious conditions along with increased photosynthesis. Based on the divergent behavior of beech in P-poor and P-rich forest soil, we conclude that acclimation of beech to low P stocks involves dedicated mycorrhizal community structures, low P reserves in storage tissues and photosynthetic inhibition, while storage and aboveground allocation of additional P occurs regardless of the P nutritional status.
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Affiliation(s)
- Aljosa Zavišić
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
| | - Nan Yang
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
| | - Sven Marhan
- Institute of Soil Science and Land Evaluation, Soil Biology, University of Hohenheim, Stuttgart, Germany
| | - Ellen Kandeler
- Institute of Soil Science and Land Evaluation, Soil Biology, University of Hohenheim, Stuttgart, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
- Laboratory for Radio-Isotopes, University of Göttingen, Göttingen, Germany
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Landuyt D, Perring M, Seidl R, Taubert F, Verbeeck H, Verheyen K. Modelling understorey dynamics in temperate forests under global change-Challenges and perspectives. PERSPECTIVES IN PLANT ECOLOGY, EVOLUTION AND SYSTEMATICS 2018; 31:44-54. [PMID: 29628800 PMCID: PMC5884426 DOI: 10.1016/j.ppees.2018.01.002] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The understorey harbours a substantial part of vascular plant diversity in temperate forests and plays an important functional role, affecting ecosystem processes such as nutrient cycling and overstorey regeneration. Global change, however, is putting these understorey communities on trajectories of change, potentially altering and reducing their functioning in the future. Developing mitigation strategies to safeguard the diversity and functioning of temperate forests in the future is challenging and requires improved predictive capacity. Process-based models that predict understorey community composition over time, based on first principles of ecology, have the potential to guide mitigation endeavours but such approaches are rare. Here, we review fourteen understorey modelling approaches that have been proposed during the last three decades. We evaluate their inclusion of mechanisms that are required to predict the impact of global change on understorey communities. We conclude that none of the currently existing models fully accounts for all processes that we deem important based on empirical and experimental evidence. Based on this review, we contend new models are needed to project the complex impacts of global change on forest understoreys. Plant functional traits should be central to such future model developments, as they drive community assembly processes and provide valuable information on the functioning of the understorey. Given the important role of the overstorey, a coupling of understorey models to overstorey models will be essential to predict the impact of global change on understorey composition and structure, and how it will affect the functioning of temperate forests in the future.
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Affiliation(s)
- D. Landuyt
- Forest & Nature Lab, Department of Forest and Water Management, Ghent University, Geraardsbergsesteenweg 267, 9090 Melle-Gontrode, Belgium
| | - M.P. Perring
- Forest & Nature Lab, Department of Forest and Water Management, Ghent University, Geraardsbergsesteenweg 267, 9090 Melle-Gontrode, Belgium
- Ecosystem Restoration and Intervention Ecology Research Group, School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - R. Seidl
- Institute of Silviculture, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences (BOKU), Peter Jordan Straße 82, 1190 Vienna, Austria
| | - F. Taubert
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research—UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - H. Verbeeck
- Computational and Applied Vegetation Ecology (CAVELab), Department of Applied Ecology and Environmental Biology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - K. Verheyen
- Forest & Nature Lab, Department of Forest and Water Management, Ghent University, Geraardsbergsesteenweg 267, 9090 Melle-Gontrode, Belgium
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Dvořák D, Vašutová M, Hofmeister J, Beran M, Hošek J, Běťák J, Burel J, Deckerová H. Macrofungal diversity patterns in central European forests affirm the key importance of old-growth forests. FUNGAL ECOL 2017. [DOI: 10.1016/j.funeco.2016.12.003] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change. Microbiol Mol Biol Rev 2017; 81:81/2/e00063-16. [PMID: 28404790 DOI: 10.1128/mmbr.00063-16] [Citation(s) in RCA: 212] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The ecology of forest soils is an important field of research due to the role of forests as carbon sinks. Consequently, a significant amount of information has been accumulated concerning their ecology, especially for temperate and boreal forests. Although most studies have focused on fungi, forest soil bacteria also play important roles in this environment. In forest soils, bacteria inhabit multiple habitats with specific properties, including bulk soil, rhizosphere, litter, and deadwood habitats, where their communities are shaped by nutrient availability and biotic interactions. Bacteria contribute to a range of essential soil processes involved in the cycling of carbon, nitrogen, and phosphorus. They take part in the decomposition of dead plant biomass and are highly important for the decomposition of dead fungal mycelia. In rhizospheres of forest trees, bacteria interact with plant roots and mycorrhizal fungi as commensalists or mycorrhiza helpers. Bacteria also mediate multiple critical steps in the nitrogen cycle, including N fixation. Bacterial communities in forest soils respond to the effects of global change, such as climate warming, increased levels of carbon dioxide, or anthropogenic nitrogen deposition. This response, however, often reflects the specificities of each studied forest ecosystem, and it is still impossible to fully incorporate bacteria into predictive models. The understanding of bacterial ecology in forest soils has advanced dramatically in recent years, but it is still incomplete. The exact extent of the contribution of bacteria to forest ecosystem processes will be recognized only in the future, when the activities of all soil community members are studied simultaneously.
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Pena R, Lang C, Lohaus G, Boch S, Schall P, Schöning I, Ammer C, Fischer M, Polle A. Phylogenetic and functional traits of ectomycorrhizal assemblages in top soil from different biogeographic regions and forest types. MYCORRHIZA 2017; 27:233-245. [PMID: 27885418 DOI: 10.1007/s00572-016-0742-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 10/28/2016] [Indexed: 05/05/2023]
Abstract
Ectomycorrhizal (EM) fungal taxonomic, phylogenetic, and trait diversity (exploration types) were analyzed in beech and conifer forests along a north-to-south gradient in three biogeographic regions in Germany. The taxonomic community structures of the ectomycorrhizal assemblages in top soil were influenced by stand density and forest type, by biogeographic environmental factors (soil physical properties, temperature, and precipitation), and by nitrogen forms (amino acids, ammonium, and nitrate). While α-diversity did not differ between forest types, β-diversity increased, leading to higher γ-diversity on the landscape level when both forest types were present. The highest taxonomic diversity of EM was found in forests in cool, moist climate on clay and silty soils and the lowest in the forests in warm, dry climate on sandy soils. In the region with higher taxonomic diversity, phylogenetic clustering was found, but not trait clustering. In the warm region, trait clustering occurred despite neutral phylogenetic effects. These results suggest that different forest types and favorable environmental conditions in forests promote high EM species richness in top soil presumably with both high functional diversity and phylogenetic redundancy, while stressful environmental conditions lead to lower species richness and functional redundancy.
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Affiliation(s)
- Rodica Pena
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
| | - Christa Lang
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
- Faculty of Communication and Environment, Rhine-Waal University of Applied Science, Friedrich-Heinrich-Allee 24, 47475, Kamp-Lintfort, Germany
| | - Gertrud Lohaus
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany
- Bergische Universität Wuppertal, Molekulare Pflanzenforschung/Pflanzenbiochemie, Gaußstr. 20, 42119, Wuppertal, Germany
| | - Steffen Boch
- Institute of Plant Sciences and Botanical Garden, University of Bern, Altenbergrain 21, 3013, Bern, Switzerland
| | - Peter Schall
- Waldbau und Waldökologie der gemäßigten Zonen, Burkhard Institut, Georg-August Universität Göttingen, Büsgenweg 1, 37077, Göttingen, Germany
| | - Ingo Schöning
- Max-Planck-Institute for Biogeochemistry, Department Biogeochemical Processes, Hans-Knöll-Str. 10, 07745, Jena, Germany
| | - Christian Ammer
- Waldbau und Waldökologie der gemäßigten Zonen, Burkhard Institut, Georg-August Universität Göttingen, Büsgenweg 1, 37077, Göttingen, Germany
| | - Markus Fischer
- Institute of Plant Sciences and Botanical Garden, University of Bern, Altenbergrain 21, 3013, Bern, Switzerland
| | - Andrea Polle
- Forstbotanik und Baumphysiologie, Büsgen-Institut, Georg-August Universität Göttingen, Büsgenweg 2, 37077, Göttingen, Germany.
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