Stream biomonitoring using macroinvertebrates around the globe: a comparison of large-scale programs

Bioindicator aquatic insects at risk from climate change in a biodiversity hotspot

Climate change can affect biological assemblages by shifting their species' geographic range and changing species richness. Aquatic insects represent more than half of the freshwater animal species but have been neglected mainly in climate change assessments, particularly in tropical ecosystems. Among the aquatic insect taxa, Ephemeroptera, Plecoptera, and Trichoptera (EPT) are well-known bioindicators of environmental changes and encompass an essential metric for rivers and streams' biomonitoring. Here, we use ecological niche models to project the impact of climate change on the distribution range and richness of EPT in the Atlantic Forest biodiversity hotspot. We found EPT to be at high risk from future climate change, with Plecoptera as the order of greatest concern. We projected range contraction of ca. 90 % of the analyzed EPT genera, resulting in a reduction in the richness of EPT genera under future climatic conditions. We projected >50 % contraction in the distribution of 50 % of Plecoptera, ≈14 % of Trichoptera, and ≈7 % of Ephemeroptera genera. The remaining climatically suitable regions in the Atlantic Forest are concentrated in the high-altitude areas, which may act as climate refuges for EPT biodiversity in the future. The projected changes in EPT's distribution range and richness may impact biomonitoring programs conducted in tropical ecosystems. Restricting EPT's geographic distribution may undermine its potential as a bioindicator and influence the composition of EPT assemblages at reference sites, which may lead to shifting baseline conditions. We reinforce the importance of considering future climatic conditions when planning long-term biomonitoring and priority areas for conservation.

Improving the performance of macroinvertebrate based multi-metric indices by incorporating functional traits and an index performance-driven approach

Human-driven multiple pressures impact freshwater ecosystems worldwide, reducing biodiversity, and impacting ecosystem functioning and services provided to human societies. Multi-metric indices (MMIs) are suitable tools for tracking the effects of anthropogenic pressures on freshwater ecosystems because they incorporate various biological metrics responding to multiple pressures at different levels of biological organization. However, the performance and applicability of MMIs depend on their metrics' selection and their calibration against natural environmental gradients. In this study, we aimed to unravel i) how incorporating functional trait-based metrics affects the performance of MMIs, ii) how disentangling the natural environmental gradients from anthropogenic pressures effects affects the performance of MMIs, and iii) how the performance of MMIs developed using a metric performance-driven approach compares with MMIs developed using an index performance-driven approach. We carried out a field survey measuring abiotic and biotic variables at 53 sites in the Karun River basin (Iran) in 2018. For functional trait-based metrics, we used 15 macroinvertebrate traits and calculated community-weighted mean trait values and functional diversity indices. We used random forest modeling to account for the effect of natural environmental gradients on each metric. Based on our results, incorporating functional traits increased the MMI performance significantly and facilitated ecological interpretation of MMIs. Both taxonomic and functional components of macroinvertebrate assemblages co-varied strongly with natural environmental gradients, and accounting for these covariations improved the performance of MMIs. Finally, we found that index performance-driven MMIs performed better in terms of precision, bias, sensitivity, and responsiveness than metric performance-driven MMIs.

Measuring the state of aquatic environments using eDNA-upscaling spatial resolution of biotic indices

Aquatic macroinvertebrates, including many aquatic insect orders, are a diverse and ecologically relevant organismal group yet they are strongly affected by anthropogenic activities. As many of these taxa are highly sensitive to environmental change, they offer a particularly good early warning system for human-induced change, thus leading to their intense monitoring. In aquatic ecosystems there is a plethora of biotic monitoring or biomonitoring approaches, with more than 300 assessment methods reported for freshwater taxa alone. Ultimately, monitoring of aquatic macroinvertebrates is used to calculate ecological indices describing the state of aquatic systems. Many of the methods and indices used are not only hard to compare, but especially difficult to scale in time and space. Novel DNA-based approaches to measure the state and change of aquatic environments now offer unprecedented opportunities, also for possible integration towards commonly applicable indices. Here, we first give a perspective on DNA-based approaches in the monitoring of aquatic organisms, with a focus on aquatic insects, and how to move beyond traditional point-based biotic indices. Second, we demonstrate a proof-of-concept for spatially upscaling ecological indices based on environmental DNA, demonstrating how integration of these novel molecular approaches with hydrological models allows an accurate evaluation at the catchment scale. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.

Physical habitat modeling for river macroinvertebrate communities

Habitat models rarely consider macroinvertebrate communities as ecological targets in rivers. Available approaches mainly focus on single macroinvertebrate species, not addressing the ecological needs and functionality of the whole community. This research aimed at providing an approach to model the habitat of the macroinvertebrate communities. The study was carried out in three rivers, located in Italy and characterized by a braiding morphology, gravel riverbeds, and low flows during the summer period. The approach is based on the recently developed Flow-T index, together with a Random Forest (RF) regression, which is employed to apply the Flow-T index at the mesohabitat scale. Using different datasets gathered from field data collection and 2D hydrodynamic simulations, the model was calibrated in the Trebbia River (2019 field campaign) and validated in the Trebbia, Taro, and Enza rivers (2020 field campaign). The RF model selected 12 mesohabitat descriptors as important for the macroinvertebrate community. These descriptors belong to different frequency classes of water depth, flow velocity, substrate grain size, and connectivity to the main river channel. The cross-validation R2 coefficient (R2cv) of the training dataset was 0.71, whereas the R2 coefficient (R2test) for the validation dataset was 0.63. The agreement between the simulated results and the experimental data shows sufficient accuracy and reliability. The outcomes of the study reveal that the model can identify the ecological response of the macroinvertebrate community to possible flow regime alterations and river morphological modifications. Lastly, the proposed approach allowed to extend the MesoHABSIM methodology, widely used for the fish habitat assessment, to a different ecological target community. Further applications of the approach can be related to ecological flows design in both perennial and non-perennial rivers, including river reaches in which fish fauna is absent.

Current trends and mismatches on fungicide use and assessment of the ecological effects in freshwater ecosystems

Despite increasing evidence of off-site ecological impacts of pesticides and policy efforts worldwide, pesticide use is still far from being ecologically sustainable. Fungicides are among the most sold classes of pesticides and are crucial to ensure global food supply and security. This study aimed to identify potential gaps of knowledge and mismatches between research and usage data of fungicides by: (i) systematizing the current trends in global sales of fungicides, focusing on the European context in particular (where they are proportionally important); (ii) reviewing the scientific literature on the impacts of synthetic fungicides on non-target freshwater organisms. Sales data revealed important global and regional asymmetries in the relative importance of fungicides and the preferred active ingredients. The literature review on the ecological effects of fungicides disclosed a mismatch between the most studied and the most sold substances, as well as a bias towards the use of single species assays with standard test organisms. To ensure a proper evaluation, risk scenarios should focus on a regional scale, and research agendas must highlight sensitive aquatic ecorreceptors and improve the crosstalk between analytical and sales data.

Predicting macroinvertebrate average score per taxon (ASPT) at water quality monitoring sites in Japanese rivers

Biomonitoring with bioindicators such as river macroinvertebrates is fundamental for assessing the status of freshwater ecosystems. In Japan, water quality and biomonitoring surveys are conducted separately, leading to a lack of nationwide information on their relationships and the biological status of water quality monitoring (WQM) sites. To understand the biological status of WQM sites across Japan, we developed a multiple linear regression model to estimate the average score per taxon (ASPT) using river macroinvertebrate data surveyed at a total of 237 "aligned" sites based on the co-occurrence of biomonitoring and WQM sites. The resulting regression model with eight predictors, such as biological oxygen demand, the proportion of urban areas in the catchment, could predict ASPT with reasonable accuracy (e.g., an error of ±1 for 96% of the aligned data). Using this model, we estimated ASPT values at 2925 WQM sites in rivers nationwide, categorizing them into four levels of river environment quality: "very good" (29% of WQM sites), "good" (50%), "fairly good" (14%), and "not good" (8%). Furthermore, we observed statistically significant correlations (p < 0.05; 0.4 ≤ r ≤ 0.7) between ASPT and all eight macroinvertebrate metrics examined, such as mayfly and stonefly richness, providing ecological implications of changes in ASPT.

Towards harmonized standards for freshwater biodiversity monitoring and biological assessment using benthic macroinvertebrates

Monitoring programs at sub-national and national scales lack coordination, harmonization, and systematic review and analysis at continental and global scales, and thus fail to adequately assess and evaluate drivers of biodiversity and ecosystem degradation and loss at large spatial scales. Here we review the state of the art, gaps and challenges in the freshwater assessment programs for both the biological condition (bioassessment) and biodiversity monitoring of freshwater ecosystems using the benthic macroinvertebrate community. To assess the existence of nationally- and regionally- (sub-nationally-) accepted freshwater benthic macroinvertebrate protocols that are put in practice/used in each country, we conducted a survey from November 2022 to May 2023. Responses from 110 respondents based in 67 countries were received. Although the responses varied in their consistency, the responses clearly demonstrated a lack of biodiversity monitoring being done at both national and sub-national levels for lakes, rivers and artificial waterbodies. Programs for bioassessment were more widespread, and in some cases even harmonized among several countries. We identified 20 gaps and challenges, which we classed into five major categories, these being (a) field sampling, (b) sample processing and identification, (c) metrics and indices, (d) assessment, and (e) other gaps and challenges. Above all, we identify the lack of harmonization as one of the most important gaps, hindering efficient collaboration and communication. We identify the IUCN SSC Global Freshwater Macroinvertebrate Sampling Protocols Task Force (GLOSAM) as a means to address the lack of globally-harmonized biodiversity monitoring and biological assessment protocols.

Monthly sampling reveals seasonal fine sediment fluctuations and riverine invertebrate community responses

Managing the impacts of anthropogenically enhanced deposited fine sediment levels in lotic ecosystems requires understanding of how catchment land-use changes have altered the natural sediment regime (erosion, transport, deposition) of rivers. Unfortunately, no existing studies have employed an appropriate sampling frequency over a period encompassing the full range of seasonal flow conditions expected to influence in-stream sediment dynamics. We determined the short-term (monthly) dynamics of deposited fine sediment and invertebrate communities over 12-months in 15 fourth- and fifth-order rivers draining catchments of low, medium and high land-use intensity in Southland, New Zealand to determine when and where fine sediment threatens stream health. We compared the Quorer resuspension method (suspendable inorganic sediment, SIS) and the in-stream visual sediment cover assessment method, and evaluated the effectiveness of four commonly-used invertebrate stream health metrics against their newly developed sediment-specific counterparts. Monthly variability in SIS was substantial across all land-use categories, but became more pronounced as land-use intensity increased. All 15 sites experienced a prolonged period of relatively stable flow which coincided with the largest short-term increase in SIS at 14 of the 15 sites. However, variability in SIS was not mirrored in macroinvertebrate metrics. These findings suggest that controlling inputs of fine sediment to rivers and streams will be most effective when targeted at periods of prolonged stable flow, particularly within high land-use intensity catchments. The resuspension method consistently outperformed visual estimates when considering its relationship with macroinvertebrate metrics, while sediment-specific metrics demonstrated a stronger association with fine sediment than commonly employed metrics e.g. (%EPT). We conclude that restoration/mitigation practices cannot be based solely on short-term, or even long-term, reductions in fine sediment, or on physical measures alone, but should be based on long-term recoveries of sediment-impacted invertebrate communities using concurrent measurements of both biotic and abiotic conditions.

Assessing the ecological health of the upper and middle Awash River, Ethiopia, using benthic macroinvertebrates community structure and selected environmental variables

Research on the Awash River focused on the upper section, while the middle and lower regions received little attention. Thus, the goal of this study was to evaluate the impact of anthropogenic activities on the upper and middle Awash River. The study took place in nine sampling locations in dry and wet seasons from September 2021 to April 2022 using a multi-habitat sampling approach. We used macroinvertebrate metrics, environmental variables, and multivariate analysis to evaluate ecological health. The highest concentrations of NO3, soluble reactive phosphorus, and total phosphorus (0.50-0.93 mg L-1) were recorded at the river-mouth of the upper Awash, while the locations below Metehara had the lowest levels of dissolved oxygen (1.81-2.33 mg L-1). Redundancy analysis indicated that dissolved oxygen, NH3, temperature, NO2, pH, TSS, NO3, and TDS influenced macroinvertebrate distribution. The presence of the sensitive groups Caenidae, Hydropsychidae, Heptageniidae, and Aeshnidae at upstream sites indicated better ecological conditions. The middle and downstream sites supported moderately tolerant and tolerant taxa demonstrating water quality impairment. The lowest Ethiopian biotic score was recorded at the river-mouth of the upper Awash. The study sites below Metehara demonstrated severe ecological impairment since highly tolerant taxa were abundant and had strong correlations with temperature, TSS, and TDS levels. Pollutants from agricultural farms and domestic and industrial wastes from Addis Ababa, Metehara, and Merti towns most likely affect the impaired sites. This study demonstrated that the middle Awash experienced substantial ecological deterioration, indicating the need for restoration works to fit the water for socio-economic development.

A Comparison of Two Macroinvertebrate Multi-Plate Sampling Methods to Inform Great Lakes Monitoring and Remediation Efforts

Hester-Dendy (HD) multi-plate samplers have been widely used by state and federal government agencies for bioassessment of water quality through use of macroinvertebrate community data. To help guide remediation and restoration efforts at the Niagara River Great Lakes Area of Concern site, a multi-agency study was conducted in 2014 to assess the contribution of seven major urban tributaries on the US side of the river toward the impairment of the Niagara River. As part of this study, macroinvertebrate communities were sampled using two co-located versions of HD samplers: one version used by the New York State Department of Environmental Conservation (NYSDEC) and another by the US Environmental Protection Agency Office of Research and Development. Samplers were deployed in tributaries in highly developed watersheds with high percent impervious surface. The two sampling methods varied in terms of number and size of plates, between-plate spacing, and deployment method. Comparison of the similarity/grouping of communities with multivariate ordination techniques, Nonmetric Multidimensional Scaling and Multi-Response Permutation Procedure, showed that both methods were able to detect differences in communities at stations, despite some grouping by month and method. The indices and metrics derived from the two HD methods were found to give comparable but not identical assessments of water quality. Despite their differences, the methods were robust with respect to water quality categories derived from indices used nationally (HBI) and by NY state (BAP). For the common richness metrics, total taxa and EPT richness, there was no statistical difference between means from 3 samplings. Some metrics, especially percent tolerant collector-gatherer individuals, did show significant differences at certain stations. Indicator Species Analysis showed some taxa associated with each method. The observed community differences were thought mostly due to the difference in sampler deployment position.

Functional trait dataset of benthic macroinvertebrates in South Korean streams

Functional traits are the result of evolution and adaptation, providing important ecological insights into how organisms interact with their environment. Benthic macroinvertebrates, in particular, have garnered attention as biomonitoring indicators for freshwater ecosystems. This study presents a functional trait dataset for benthic macroinvertebrates, comprising 447 taxa (393 at genus level, 53 at family level and one at class level) from five phyla (Annelida, Arthropoda, Mollusca, Nematomorpha, and Platyhelmenthes), categorized into nine traits related to life history, morphology, and habit. To account for variation in available trait information, we assigned confidence levels to each taxon and functional trait based on the level of evidence using fuzzy coding. Our dataset provides an important resource for understanding the ecology of benthic macroinvertebrates in South Korea, serving as a valuable baseline dataset for studying their biodiversity, conservation, and biomonitoring in freshwater ecosystems.

Taxonomic and Feeding Trait-Based Analysis of Macroinvertebrates in the Antisana River Basin (Ecuadorian Andean Region)

High-elevation tropical streams are under increasing threat from human activities and climate change. Specifically, Ecuadorian Andean streams require priority actions such as bioassessment (e.g., biodiversity and functional ecology of macroinvertebrates) in order to generate adequate environmental management policies. Therefore, we investigated the distribution and composition of the macroinvertebrate taxa and their functional feeding groups in relation to the environmental variables in the Antisana river basin (Andean-Ecuadorian Region). We sampled macroinvertebrates from 15 locations to assess ecological conditions (ECs), expressed as the Biological Monitoring Working Party Colombia (BMWP-Col) classes, the Andean Biotic Index (ABI) and the Andean-Amazon Biotic Index (AAMBI). Results indicate that dissolved oxygen saturation, elevation, nutrient concentration and conductivity contributed significantly to the composition of the taxa and functional feeding groups (FFGs). Taxa diversity and FFGs were more abundant in the best EC sites. Shredders (SH) were, overall, dominant and abundant at sites with medium-high ECs. Scrapers constituted the second most prevalent assemblage, exerting dominance at moderate ecological conditions (high altitude and high oxygen saturation). Collector-gathers (CGs) are less sensitive to contamination than the previous two groups but were equally abundant at medium-high EC sites. Collector-filterers (CFs) and parasites (PAs) were less abundant, although the presence of the former was slightly related to better environmental conditions. Predators (PRs) were almost absent throughout the study, but they were collected from poor EC sites. CGs, PAs and PRs showed more tolerance to the presence of human disturbances (e.g., hydraulic constructions or slope erosion). The BMWP-Col index seems to be the best fit for this ecosystem, showing a significant difference in FFG between the index classes, compared to the other indices evaluated. The results of this investigation may be regarded as a fundamental starting point and used in future bioassessment work in other similar ecosystems, particularly high-altitude tropical Ecuadorian streams.

Community recovery of benthic macroinvertebrates in a stream influenced by mining activity: Importance of microhabitat monitoring

The decrease in freshwater biodiversity owing to anthropogenic disturbances such as mining activity is a global challenge; hence, there is an urgent need for systematic approaches to continuously monitor such disturbances and/or the recovery of biodiversity in freshwater habitats. The Hwangjicheon Stream is the source of South Korea's longest river and has been subjected to runoff from coal mining. We investigated changes in the diversity of the benthic macroinvertebrate community in various microhabitats, including riffle, run, and pool, to monitor the recovery of biodiversity in the stream following the improvement of a mining water treatment plant in 2019. The dataset comprised 111 samples obtained from four types of microhabitats (riffle, run, pool, and riparian) over a four-year period from 2018 to 2021. The mining-affected sites had lower macroinvertebrate community complexities according to a network analysis, and grouped into the same cluster based on self-organizing map (SOM) analysis. Moreover, 51 taxa selected as indicator species represented each cluster obtained through the SOM analysis. Among them, only Limnodrilus gotoi and Radix auricularia were included as indicator species at the mining-affected sites. However, after 2020, the benthic macroinvertebrate community complexity increased, and some of the microhabitats at the mining-affected sites were included in the same cluster as the reference sites in the SOM analysis, indicating that the recovery of benthic macroinvertebrate communities had initiated in certain microhabitats (e.g., riparian). Further analysis confirmed that the macroinvertebrate community clearly differed according to the survey year, even in different microhabitats at the same sites. This suggests that more acute microhabitat monitoring may be necessary to quickly confirm biodiversity restoration when assessing the degree of the recovery in river biodiversity from anthropogenic disturbances.

Evaluation of the upper lakes of the Erhai watershed in China based on water quality, land cover, and macrobenthic invertebrates

In this study, three lakes, Cibi Hu, Haixi Hai, and Xi Hu, in the upper reaches of the main inflow rivers in the northern part of Erhai Lake were selected as the research objects. Based on the water environment monitoring indicators, land cover data, and lake macrobenthic community observation data, the non-parametric Kruskal-Wallis test, spatial analysis and community structure analysis were used to quantitatively assess the water environment and ecological status of the lakes. Using the Pollution Tolerance Index (PTI), the potential utility of macroinvertebrate communities as indicators of water ecological quality was investigated. The results showed that Cibi Hu and Haixi Hai have similar characteristics on water environmental quality. The physical and chemical indexes of water quality, the land cover of the lake catchment area, and the PTI index of the benthic community showed that Xi Hu was the most affected by human disturbance; the water ecological condition was the worst; and the environmental protection pressure was the greatest. In general, PTI analysis based on benthic fauna is convenient and can reflect the basic conditions of the aquatic benthic environment keenly, which is worthy of promotion.

A review of the application of the macroinvertebrate-based multimetric indices (MMIs) for water quality monitoring in lakes

The increasing stress on lake ecosystems is affecting their functioning such as providing goods and services to inhabiting organisms and riparian communities. Monitoring of water quality is important for sustainable management and restoration of lake ecosystems. However, the costs associated with traditional approaches have become prohibitive, while not giving reliable early warning signals on resource conditions. Thus, the current shift in the use of bioindicators and multimetric indices (MMIs) in the monitoring of water quality is currently gaining global recognition with more emphasis on its application in lotic ecosystems. Therefore, this paper provides an elaborated insight into the application of macroinvertebrate-based MMIs in lentic ecosystems and the successes achieved so far. The various metrics and indices, the development strategies, application challenges, the use of macroinvertebrates as bioindicators, and the future projection of enhancing MMI usage in lentic environment monitoring, particularly in developing countries, are extensively covered. The use of MMI as a rapid lake biomonitoring tool needs to be adopted for sustainable applications in lake ecosystem management and as an integrated approach to monitoring human-induced stress especially in developing countries where there is a paucity of information.

Hidden diversity: DNA metabarcoding reveals hyper-diverse benthic invertebrate communities

BACKGROUND

Freshwater ecosystems, such as streams, are facing increasing pressures from agricultural land use and recent literature stresses the importance of robust biomonitoring to detect trends in insect decline globally. Aquatic insects and other macroinvertebrates are often used as indicators of ecological condition in freshwater biomonitoring programs; however, these diverse groups can present challenges to morphological identification and coarse-level taxonomic resolution can mask patterns in community composition. Here, we incorporate molecular identification (DNA metabarcoding) into a stream biomonitoring sampling design to explore the diversity and variability of aquatic macroinvertebrate communities at small spatial scales. While individual stream reaches can be very heterogenous, most community ecology studies focus on larger, landscape-level patterns of community composition. A high degree of community variability at the local scale has important implications for both biomonitoring and ecological research, and the incorporation of DNA metabarcoding into local biodiversity assessments will inform future sampling protocols.

RESULTS

We sampled twenty streams in southern Ontario, Canada, for aquatic macroinvertebrates across multiple time points and assessed local community variability by comparing field replicates taken ten meters apart within the same stream. Using bulk-tissue DNA metabarcoding, we revealed that aquatic macroinvertebrate communities are highly diverse at small spatial scales with unprecedented levels of local taxonomic turnover. We detected over 1600 Operational Taxonomic Units (OTUs) from 149 families, and a single insect family, the Chironomidae, contained over one third of the total number of OTUs detected in our study. Benthic communities were largely comprised of rare taxa detected only once per stream despite multiple biological replicates (24-94% rare taxa per site). In addition to numerous rare taxa, our species pool estimates indicated that there was a large proportion of taxa that remained undetected by our sampling regime (14-94% per site). Our sites were located across a gradient of agricultural activity, and while we predicted that increased land use would homogenize benthic communities, this was not supported as within-stream dissimilarity was unrelated to land use. Within-stream dissimilarity estimates were consistently high for all levels of taxonomic resolution (invertebrate families, invertebrate OTUs, chironomid OTUs), indicating stream communities are very dissimilar at small spatial scales.

Assessing arthropod diversity metrics derived from stream environmental DNA: spatiotemporal variation and paired comparisons with manual sampling

Background

Benthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods.

Methods

We evaluated eDNA analogs of BI metrics in the Potomac River watershed of the eastern United States. We first compared arthropod diversity detected with primers targeting mitochondrial 16S (mt16S) and cytochrome c oxidase 1 (cox1 or COI) loci to that detected by manual surveys conducted in parallel. We then evaluated spatial and temporal variation in arthropod diversity metrics with repeated sampling in three focal parks. We also investigated technical factors such as filter type used to capture eDNA and PCR inhibition treatment.

Results

Our results indicate that genus-level assessment of eDNA compositions is achievable at both loci with modest technical noise, although database gaps remain substantial at mt16S for regional taxa. While the specific taxa identified by eDNA did not strongly overlap with paired manual surveys, some metrics derived from eDNA compositions were rank-correlated with previously derived biological indices of environmental quality. Repeated sampling revealed statistical differences between high- and low-quality sites based on taxonomic diversity, functional diversity, and tolerance scores weighted by taxon proportions in transformed counts. We conclude that eDNA compositions are efficient and informative of stream condition. Further development and validation of scoring schemes analogous to commonly used biological indices should allow increased application of the approach to management needs.

Macroinvertebrate assemblages from a stream-wetland complex: a case study with implications for assessing restored hydrologic functions

Legacies of past land use persist today in the form of incised, single-threaded stream channels with dramatically different hydrologic functions of pre-colonial stream valleys. Restoration practices that aim to return lost hydrologic functions by re-establishing floodplain and groundwater connections should result in stream habitat and biological assemblages that differ from modern, single-threaded channels. The aim of this case study was to identify attributes of macroinvertebrate assemblages that might serve as biological indicators of improved hydrologic functions following the restoration of a stream-wetland complex, similar to a Stage 0 restoration, of a headwater valley in the Western Allegheny region of the USA. We monitored hydrologic functions and macroinvertebrate assemblages from stream reaches of a restored and unrestored site over multiple years during the early years following restoration. Reduced bed mobility and increased flow duration indicated improved hydrologic functions from the restored site. Aggregate metrics that capture functional attributes of macroinvertebrate assemblage (i.e., density and biomass) were consistently greater from the restored site. EPT biomass from restored pools was 3-4 × greater than amounts from the unrestored site as a result of consistently greater mayfly abundance. Restored pools also supported a subassemblage of taxa with life history attributes that are aligned with habitat conditions created from improved hydrologic functions. Results from this case study demonstrate the importance of habitat-specific sampling designs that report the absolute abundance of potential biological indicators. Findings from this case study should help guide the development of rapid biological indicators of improved hydrologic functions.

Fish and macroinvertebrate assemblages reveal extensive degradation of the world's rivers

Rivers suffer from multiple stressors acting simultaneously on their biota, but the consequences are poorly quantified at the global scale. We evaluated the biological condition of rivers globally, including the largest proportion of countries from the Global South published to date. We gathered macroinvertebrate- and fish-based assessments from 72,275 and 37,676 sites, respectively, from 64 study regions across six continents and 45 nations. Because assessments were based on differing methods, different systems were consolidated into a 3-class system: Good, Impaired, or Severely Impaired, following common guidelines. The proportion of sites in each class by study area was calculated and each region was assigned a Köppen-Geiger climate type, Human Footprint score (addressing landscape alterations), Human Development Index (HDI) score (addressing social welfare), % rivers with good ambient water quality, % protected freshwater key biodiversity areas; and % of forest area net change rate. We found that 50% of macroinvertebrate sites and 42% of fish sites were in Good condition, whereas 21% and 29% were Severely Impaired, respectively. The poorest biological conditions occurred in Arid and Equatorial climates and the best conditions occurred in Snow climates. Severely Impaired conditions were associated (Pearson correlation coefficient) with higher HDI scores, poorer physico-chemical water quality, and lower proportions of protected freshwater areas. Good biological conditions were associated with good water quality and increased forested areas. It is essential to implement statutory bioassessment programs in Asian, African, and South American countries, and continue them in Oceania, Europe, and North America. There is a need to invest in assessments based on fish, as there is less information globally and fish were strong indicators of degradation. Our study highlights a need to increase the extent and number of protected river catchments, preserve and restore natural forested areas in the catchments, treat wastewater discharges, and improve river connectivity.

A Bibliometric Analysis of the Global Research in Odonata: Trends and Gaps

Insects of the order Odonata have been used as indicators of environmental quality in different aquatic systems around the world. In this context, we conducted a bibliometric analysis to understand the general patterns of research on Odonata published in the past decade (2012–2021). We extracted literature from the Web of Science (WoS) in the advanced search option and used search terms related to Odonata plus search strings for each term. A total of 2764 Odonata publications were identified. The journals with the most published articles on Odonata were Zootaxa, International Journal of Odonatology and Odonatologica. The countries with the most Odonata publications were the USA, Brazil and China. Most studies were conducted on streams, ponds and rivers. Ecology, taxonomy and behavior were the main study topics. Of the total articles on Odonata, 982 involved Zygoptera and 946 Anisoptera. Another 756 studies were focused on both suborders. The increase in ecological and taxonomic studies of Odonata reflects the dynamic characteristics of this order, and its relatively well-defined systematics, especially in the case of adults. Despite the recent increase in the number of publications, there are still many gaps related to topics such as biogeography, parasitism, competition within and between species, evolutionary and phylogenetic relationships, as well as studies of the eggs (e.g., their development) and larval exuviae (e.g., their morphological features).

Paleoecotoxicology: Developing methods to assess the toxicity of lake sediment records influenced by legacy gold mining

The contamination of lakes by industrial emissions is an issue of international concern. Traditional paleolimnology examines sedimentary micro-fossils to infer the biological response to natural and anthropogenic stressors over time. Here, we calculate a theoretical biological effect for historic sediment sections using Probable Effect Concentration Quotient (PEC-Q) and arsenic specific quotient methods and develop novel time-constrained sediment toxicity test methods using a cultured Daphnia sp. combined with a whole cell microbial biosensor to assess the toxicity of past industrial contamination with modern testing methods. These methods were developed using sediments collected from Pocket Lake (Northwest Territories, Canada), a lake known to have exhibited a significant ecological shift following input from nearby gold smelter emissions during the mid 20th century. We then applied these methods to near-, mid-, and far-field sites to assess the response of Daphnia sp. to varying contaminant load. Daphnia sp. mortality exposed to dated sediments indicated a strong concordance with the timing of mining activities, and a strong concordance with PEC-Q and arsenic specific toxicity quotients. In contrast, a decrease in Daphnia mortality was observed during pre-, and post-mining periods when the contaminant burden was lower. Initial assessments of bioavailability using a microbial biosensor indicated that arsenic in porewater is 72-96% bioavailable, and limited evidence that oxidative stress may contribute to the Daphnia sp. toxic response. These results indicate that lake sediment archives can be used to infer missing biomonitoring data in sites of legacy anthropogenic influence, which will be useful for those seeking to conduct cost-effective and efficient preliminary environmental risk assessments.

Considering Fish as Recipients of Ecosystem Services Provides a Framework to Formally Link Baseline, Development, and Post-operational Monitoring Programs and Improve Aquatic Impact Assessments for Large Scale Developments

In most countries, major development projects must satisfy an Environmental Impact Assessment (EIA) process that considers positive and negative aspects to determine if it meets environmental standards and appropriately mitigates or offsets negative impacts on the values being considered. The benefits of before-after-control-impact monitoring designs have been widely known for more than 30 years, but most development assessments fail to effectively link pre- and post-development monitoring in a meaningful way. Fish are a common component of EIA evaluation for both socioeconomic and scientific reasons. The Ecosystem Services (ES) concept was developed to describe the ecosystem attributes that benefit humans, and it offers the opportunity to develop a framework for EIA that is centred around the needs of and benefits from fish. Focusing an environmental monitoring framework on the critical needs of fish could serve to better align risk, development, and monitoring assessment processes. We define the ES that fish provide in the context of two common ES frameworks. To allow for linkages between environmental assessment and the ES concept, we describe critical ecosystem functions from a fish perspective to highlight potential monitoring targets that relate to fish abundance, diversity, health, and habitat. Finally, we suggest how this framing of a monitoring process can be used to better align aquatic monitoring programs across pre-development, development, and post-operational monitoring programs.

Using invertebrate functional traits to improve flow variability assessment within European rivers

Rivers are among the most threatened ecosystems worldwide and are experiencing rapid biodiversity loss. Flow alteration due to climate change, water abstraction and augmentation is a severe stressor on many aquatic communities. Macroinvertebrates are widely used for biomonitoring river ecosystems although current taxonomic approaches used to characterise ecological responses to flow have limitations in terms of generalisation across biogeographical regions. A new macroinvertebrate trait-based index, Flow-T, derived from ecological functional information (flow velocity preferences) currently available for almost 500 invertebrate taxa at the European scale is presented. The index was tested using data from rivers spanning different biogeographic and hydro-climatic regions from the UK, Cyprus and Italy. The performance of Flow-T at different spatial scales and its relationship with an established UK flow assessment tool, the Lotic-invertebrate Index for Flow Evaluation (LIFE), was assessed to determine the transferability of the approach internationally. Flow-T was strongly correlated with the LIFE index using both presence-absence and abundance weighted data from all study areas (r varying from 0.46 to 0.96). When applied at the river reach scale, Flow-T was effective in identifying communities associated with distinct mesohabitats characterised by their hydraulic characteristics (e.g., pools, riffles, glides). Flow-T can be derived using both presence/absence and abundance data and can be easily adapted to varying taxonomic resolutions. The trait-based approach facilitates research using the entire European invertebrate fauna and can potentially be applied in regions where information on taxa-specific flow velocity preferences is not currently available. The inter-regional and continental scale transferability of Flow-T may help water resource managers gauge the effects of changes in flow regime on instream communities at varying spatial scales.

Implications of local niche- and dispersal-based factors that may influence chironomid assemblages in bioassessment

Local environmental factors and dispersal-based processes can both influence the structure of metacommunities in freshwater ecosystems. Describing these patterns is especially important for biomonitoring approaches that are based on inferences made from benthic macroinvertebrate assemblages. Here, we examine the metacommunity structure of chironomid assemblages collected from 28 sampling stations along the Southern Morava River, Serbia. We examined the extent of dispersal-based processes along a temporal scale. We obtained 8 models for the different sampling seasons that determined the spatial variables that best explained variability in chironomid assemblages. Spatial processes were found to be a significant predictor of variation for chironomids during the late winter/spring (March and May) and autumn (October and November), concordant with the known phenology of common taxa. Species sorting and mass effects were found to be significant processes that structured the chironomid metacommunity. In addition, biological interactions, inferred from fish biomass, and habitat traits, demonstrated by macrophyte and riparian vegetation, were found to influence species sorting. A high variability of chironomid metacommunity structure across sampling seasons suggests that monitoring programs that include macroinvertebrates in bioassessment should avoid months with pronounced spatial processes, and consequently maximize a correlation between community structure and local environmental factors.

Improving the assessment of polluted sites using an integrated bio-physico-chemical monitoring framework

Soil - water pollution resulting from anthropogenic activities is a growing concern internationally. Effective monitoring techniques play a crucial role in the detection, prevention, and remediation of polluted sites. Current pollution monitoring practices in many geographical locations are primarily based on physico-chemical assessments which do not always reflect the potential toxicity of contaminant 'cocktails' and harmful chemicals not screened for routinely. Biomonitoring provides a range of sensitive techniques to characterise the eco-toxicological effects of chemical contamination. The bioavailability of contaminants, in addition to their effects on organisms at the molecular, cellular, individual, and community level allows the characterisation of the overall health status of polluted sites and ecosystems. Quantifying bioaccumulation, changes to community structure, faunal morphology, behavioural, and biochemical responses are standard procedures employed in biomonitoring studies in many High-Income Countries (HICs). This review highlights the need to integrate biomonitoring tools alongside physico-chemical monitoring techniques by using 'effect-based' tools to provide more holistic information on the ecological impairment of soil-water systems. This paper considers the wider implementation of biomonitoring methods in Low to Middle Income Countries (LMICs) and their significance in pollution investigations and proposes an integrated monitoring framework that can identify toxicity drivers by utilising 'effect-based' and 'risk-based' monitoring approaches.

Refining benthic macroinvertebrate kick sampling protocol for wadeable rivers and streams in Ethiopia

Streams and rivers cover a larger proportion of the Earth's surface but are highly affected by human pressures. Conversely, bioassessment methods are in their infancy in developing countries such as Ethiopia. In this study, we compared 2- and 3-min macroinvertebrate kick samples at multiple locations for both riffle habitat (RH) and multihabitat (MH) approaches. The performance of each method was evaluated statistically using benthic macroinvertebrate metrics and diversity indices. Results of the Kruskal-Wallis analysis in this study showed no significant differences among methods tested in minimally impacted streams in Ethiopia and generally performed equally irrespective of the methods employed except for total abundances and Ephemeroptera abundances. Furthermore, multivariate analysis of the relative abundances of macroinvertebrate communities using analysis of similarity (ANOSIM), RELATE, non-metric multidimensional scaling (MDS), and classification strength-sampling method comparability (CS-SMC) indicated a high similarity in the macroinvertebrate communities recorded among all methods employed in this study area. However, the index of multivariate dispersion (IMD) test showed variations in relative abundances of macroinvertebrate communities among the methods. In summary, if the focus is not on rare taxa and the required information is not dependent on additional evidence provided by the use of lower taxonomic levels of identification (genus and species), the results of the present study support the use of the shorter 2-min RH kick sampling method for the bioassessment of wadeable rivers and streams in Ethiopia.

Urbanisation process generates more independently-acting stressors and ecosystem functioning impairment in tropical Andean streams

The tropical Andes are experiencing rapid population growth and urbanisation has become a major driver impairing stream ecosystems. However, knowledge about multiple-stressors effects on urbanised Andean streams is lacking. In southern Ecuador, we assessed how multiple stressors determine the structural (aquatic invertebrate metrics) and functional (organic matter breakdown and delta N of primary consumers) attributes of streams in a densely populated watershed without wastewater treatment and with contrasting land uses. We found that urbanised streams exhibited individual-stressor effects and that stressor interactions were rare. While structural and function attributes responded negatively to urbanisation, ecosystem functioning metrics were influenced most. Stream ecosystem functions were influenced by water-chemistry stressors, whereas aquatic invertebrate metrics were influenced by physical-habitat stressors. We suggest that managers of urbanised streams in the Andes immediately focus on the most important stressors by reducing inputs of inorganic N and P, re-establishing stream flow and substrate heterogeneity, and restoring riparian vegetation instead of attempting to elucidate intricate interactions among stressors. Our result also demonstrate that stream biomonitoring programs would benefit from a combination of structural and functional indicators to assess anthropogenic effects in a multiple-stressors scenario.

Temporal Variability of Macroinvertebrate Assemblages in a Mediterranean Coastal Stream: Implications for Bioassessment

Macroinvertebrates from a small forest stream in central-south Chile were sampled monthly from September 2017 to August 2018 to assess temporal variability in the assemblage and the effects of that variability on ecological indicators. Higher precipitation and flows occurred in winter months, and water quality varied among months. We collected 59 macroinvertebrate taxa, finding higher taxa richness and abundances in summer months than in winter months. Four taxa demonstrated marked seasonality, being abundant in some months and then decreasing in following months (Limnoperla jaffueli (Navás), Nousia maculata (Demoulin), Smicridea sp. (McLachlan), Chironomidae spp.). The scores of the family Hilsenhoff Biotic Index (HBI), Hilsenhoff Species-level Biotic Index (HSBI), Multimetric Macroinvertebrate Index (MMI), and Chilean Biological Monitoring Working Party (ChBMWP) index varied throughout the year reflecting natural variability. However, only HBI and HSBI scores were significantly different among seasons, ranging across three water quality classes (excellent, very good, and good), showing the lowest water classes in spring, coinciding with higher abundances of tolerant species. The MMI and ChBMWP indicated good and very good site conditions throughout the year, respectively. Shannon-Weaver diversity ranged between 2.59 (April) and 1.78 (February); however, Pielou evenness had high values throughout the year (> 0.62), except in February. Changes in macroinvertebrates composition throughout the year were explained primarily by discharge, water temperature, and conductivity. Our findings indicate that natural monthly variability in macroinvertebrate assemblages influences the scores of biological indices throughout the year. Therefore, we recommend that natural stream variability be accounted for in biomonitoring programs. We also emphasize the need to use caution when interpreting biological index scores to avoid misinterpretations in stream quality classification.

Influence of river regulation and instream habitat on invertebrate assemblage' structure and function

Dams modify geomorphology, water quantity, quality and timing of stream flows affecting ecosystem functioning and aquatic biota. In this study, we addressed the structural and functional macroinvertebrate community alterations in different instream mesohabitats of two Portuguese rivers impaired by dams. We sampled macroinvertebrates in riffles, runs and pools of river sites downstream of the dams (i.e. regulated; n = 24) and in sites without the influence of the dams (i.e. unregulated; n = 7), assessing a total of 64 mesohabitats, following late spring-early summer regular flows. We found a distinct taxonomic structure and trait composition of macroinvertebrate assemblages between regulated and unregulated flow sites, and also between mesohabitats in which the differences were more evident. When analysing each mesohabitat individually, the effect of flow regulation was detected only in run-type mesohabitats for both taxonomic and trait composition, leading us to infer that a selective macroinvertebrate assessment on run mesohabitats would be a valuable contribution to detect regulated flow effects on ecosystems impaired by dams. Additionally, there is evidence that respiration and locomotion traits could be effective tools to identify damming flow alterations. This study supports that the quality assessments of rivers impacted by dams could benefit from a sampling approach focused on run mesohabitats and the detection of some key traits, which would improve assessment accuracy.

Influence of a low-head dam on water quality of an urban river system

Dam removal in the United States is becoming a common practice for stream restoration as these structures age, climate driven precipitation patterns change, and ecological uplift becomes desirable. Yet in highly urbanized watersheds, these dams may operate as retention basins removing pollutants and mitigating hydrological change. While elimination may be ecologically and economically advantageous, sediment and pollutant removal processes may be better protective of water quality and damaging flooding. In Central Virginia, we compared a watershed split between an urbanized subwatershed (>20% impervious surface encompassing 37.8% of the total watershed land surface) flowing through a 18 Ha reservoir with a rural subwatershed (<5% impervious encompassing 63.2% of the total watershed land surface) located in the James River and Chesapeake Bay watersheds. This reservoir is scheduled for removal in the near future. Comparisons of data suggest that while portions of the urbanized watershed are degraded, this condition is not reflected at the confluence where water quality more closely resembles the rural and minimally impervious subwatershed. This conclusion was further strengthened from data collected following an unexpected dam overtopping in August 2018 where the reservoir was temporarily drained because of safety concerns. After the draining, water quality reversed with the confluence resembling the urbanized rather than the rural subwatershed. Most significantly, water quality flowing into the James River quickly and significantly shifted from a good to a degraded condition. This case study suggests reservoirs in highly urbanized watersheds may serve as critical water quality improvement structures and removal as part of a stream restoration strategy must be carefully considered.

Multiple co-occurrent alien invaders constrain aquatic biodiversity in rivers

A greater understanding and effective management of biological invasions is a priority for biodiversity conservation globally. Many freshwater ecosystems are experiencing the colonization and spread of multiple co-occurrent alien species. Here the implications of both the relative abundance and richness of alien invaders on aquatic macroinvertebrate taxonomic and functional richness, ecosystem quality, and functional redundancy are assessed using long-term data from rivers in England. Based on the most common aquatic invaders, results indicated that their richness, rather than abundance, was the most important factor negatively affecting aquatic macroinvertebrate biodiversity. However, the response of functional redundancy was negatively affected by invader abundance at the river basin scale. The response of communities varied as the number of invading taxa increased, with the most marked reductions following the colonization of the first few invaders. Results indicate that different facets of multiple biological invasions influence distinct aspects of aquatic biodiversity. Preventing the establishment of new invaders and limiting invader taxa richness within a community should therefore be a conservation priority. These findings will assist river scientists in understanding mechanisms driving changes in biodiversity and facilitate the testing of ecological theories while also ensuring environmental managers and regulators can prioritize conservation / management opportunities.

Assessment of ecological impairment of Arctic streams: Challenges and future directions

As increased growth and development put pressure on freshwater systems in Arctic environments, there is a need to maintain a meaningful and feasible framework for monitoring water quality. A useful tool for monitoring the ecological health of aquatic systems is by means of the analysis and inferences made from benthic invertebrates in a biomonitoring approach. Biomonitoring of rivers and streams within the Arctic has been under-represented in research efforts. Here, we investigate an approach for monitoring biological impairment in Arctic streams from anthropogenic land use at two streams with different exposure to urban development in Iqaluit, Nunavut, Arctic Canada. Sites upstream of development, at midpoint locations, and at the mouth of each waterbody were sampled during 6 campaigns (2008, 2009, 2014, 2015, 2018, and 2019) to address spatial and temporal variability of the macroinvertebrate community. The influence of taxonomic resolution scaling was also examined in order to understand the sensitivity of macroinvertebrates as indicators in Arctic aquatic systems. We demonstrate that standard biological metrics were effective in indicating biological impairment downstream of sources of point-source pollutants. A mixed-design ANOVA for repeated measures also found strong interannual variability; however, we did not detect intra-annual variation from seasonal factors. When examining metrics at the highest taxonomic resolution possible, the sensitivity of metrics increased. Likewise, when trait-based metrics (α functional diversity) were applied to indicators identified at high taxonomic resolution, a significant difference was found between reference and impacted sites. Our results show that even though Arctic systems have lower diversity and constrained life-history characteristics compared to temperate ecosystems, biomonitoring is not only possible, but also equally effective in detecting trends from anthropogenic activities. Thus, biomonitoring approaches in Arctic environments are likely a useful means for providing rapid and cost-effective means of assessing future environmental impact.

Spatial correlation of macroinvertebrate assemblages in streams and the implications for bioassessment programs

Stream bioassessment using benthic macroinvertebrate assemblages is widely implemented by regulatory agencies, yet a critical question regarding spatial autocorrelation and sample independence remains: How much of a stream network does a point sample represent? Macroinvertebrate assemblages vary along a longitudinal gradient, likely due to a combination of natural and anthropogenic factors that alter water physiochemistry and habitat. A better understanding of how these gradients affect macroinvertebrate assemblage variance could prevent spatial over- and under-sampling within bioassessment efforts. This project investigated longitudinal patterns (10 s of km) of macroinvertebrate assemblages in 14 Wisconsin streams. Spatial autocorrelation was assessed using Moran's I and other multivariate methods with an emphasis on estimating the distance at which assemblages no longer display spatial correlation. Within most streams, there was a linear, direct relationship between assemblage dissimilarity and longitudinal distance, with distance to independence (DTI) ranging from 1.7-13.5 km. DTI was most strongly affected by conductivity, which is often a surrogate for a suite of anthropogenic effects. With increasing conductivity, DTI increases, suggesting more homogenous assemblages in disturbed streams. Natural factors like watershed size, channel gradient, and riparian slope also affected DTI. Considering spatial correlation in monitoring designs could improve the efficiency and application of regulatory bioassessment programs.

Monitoring of Neotropical Streams Using Macroinvertebrate Communities: Evidence from Honduras

Assessing the water quality by using biological indicators is a reliable and economically feasible way to promote environmental conservation in developing tropical countries. Here, we report one of the few examples of river biomonitoring in Honduras. In June 2005, benthic macroinvertebrates were collected from six sites in the Río Cangrejal basin. An adapted version of the Biological Monitoring Working Party index (BMWP) was used to assess the water quality because it is simple, consolidated, relatively easy to use, and needs a family-level identification. Moreover, two other community metrics were calculated, namely the total taxon richness and local contribution to beta diversity (LCBD). Differences in the biomonitoring and diversity metrics among sites and their correlations were statistically tested. Thirty-nine macroinvertebrate taxa were collected and, despite significant differences in the BMWP score, all sampling sites were classified in the high environmental quality class. A very strong and positive correlation between the BMPW and taxon richness was found, while LCBD did not vary significantly and did not correlate with the other metrics. Our results suggest that taxon richness could be used as a surrogate indicator to assess the water quality when consolidate biomonitoring methods are not available.

Sampling efficiency of a protocol to measure Odonata diversity in tropical streams

Odonata can be sampled following different types of protocols. In Brazil, the most used protocol is the scanning in fixed areas method, where a 100-meter transect is delimited in one of the stream margins, subdivided into 20 segments measuring 5 meters. Despite being universally used, the methodological efficiency or limitations of this protocol for Odonata has never been tested. In this scenario, our objective was to assess the efficiency of the sampling protocol to measure the richness and composition of Odonata in three fundamental aspects: the time of sampling and sampling effort over time and space. We show that the best sampling efficiency was achieved in collections performed at noon, in transects measuring 100 meters, requiring at least two samplings in the same location, supporting the procedures traditionally adopted by many studies with the group. While comparing species composition, we did not see any implication between the different treatments on the capture of the local species pool. However, we highlight and discuss some possible methodological flaws when using this protocol to sample specific Odonata groups. We believe the results obtained are fundamental in the inventory of species and to conduct future studies, as well as to aid conservative measures that use the order Odonata as a tool for environmental monitoring.

The Biological Assessment and Rehabilitation of the World's Rivers: An Overview

The biological assessment of rivers i.e., their assessment through use of aquatic assemblages, integrates the effects of multiple-stressors on these systems over time and is essential to evaluate ecosystem condition and establish recovery measures. It has been undertaken in many countries since the 1990s, but not globally. And where national or multi-national monitoring networks have gathered large amounts of data, the poor water body classifications have not necessarily resulted in the rehabilitation of rivers. Thus, here we aimed to identify major gaps in the biological assessment and rehabilitation of rivers worldwide by focusing on the best examples in Asia, Europe, Oceania, and North, Central, and South America. Our study showed that it is not possible so far to draw a world map of the ecological quality of rivers. Biological assessment of rivers and streams is only implemented officially nation-wide and regularly in the European Union, Japan, Republic of Korea, South Africa, and the USA. In Australia, Canada, China, New Zealand, and Singapore it has been implemented officially at the state/province level (in some cases using common protocols) or in major catchments or even only once at the national level to define reference conditions (Australia). In other cases, biological monitoring is driven by a specific problem, impact assessments, water licenses, or the need to rehabilitate a river or a river section (as in Brazil, South Korea, China, Canada, Japan, Australia). In some countries monitoring programs have only been explored by research teams mostly at the catchment or local level (e.g., Brazil, Mexico, Chile, China, India, Malaysia, Thailand, Vietnam) or implemented by citizen science groups (e.g., Southern Africa, Gambia, East Africa, Australia, Brazil, Canada). The existing large-extent assessments show a striking loss of biodiversity in the last 2-3 decades in Japanese and New Zealand rivers (e.g., 42% and 70% of fish species threatened or endangered, respectively). A poor condition (below Good condition) exists in 25% of South Korean rivers, half of the European water bodies, and 44% of USA rivers, while in Australia 30% of the reaches sampled were significantly impaired in 2006. Regarding river rehabilitation, the greatest implementation has occurred in North America, Australia, Northern Europe, Japan, Singapore, and the Republic of Korea. Most rehabilitation measures have been related to improving water quality and river connectivity for fish or the improvement of riparian vegetation. The limited extent of most rehabilitation measures (i.e., not considering the entire catchment) often constrains the improvement of biological condition. Yet, many rehabilitation projects also lack pre-and/or post-monitoring of ecological condition, which prevents assessing the success and shortcomings of the recovery measures. Economic constraints are the most cited limitation for implementing monitoring programs and rehabilitation actions, followed by technical limitations, limited knowledge of the fauna and flora and their life-history traits (especially in Africa, South America and Mexico), and poor awareness by decision-makers. On the other hand, citizen involvement is recognized as key to the success and sustainability of rehabilitation projects. Thus, establishing rehabilitation needs, defining clear goals, tracking progress towards achieving them, and involving local populations and stakeholders are key recommendations for rehabilitation projects (Table 1). Large-extent and long-term monitoring programs are also essential to provide a realistic overview of the condition of rivers worldwide. Soon, the use of DNA biological samples and eDNA to investigate aquatic diversity could contribute to reducing costs and thus increase monitoring efforts and a more complete assessment of biodiversity. Finally, we propose developing transcontinental teams to elaborate and improve technical guidelines for implementing biological monitoring programs and river rehabilitation and establishing common financial and technical frameworks for managing international catchments. We also recommend providing such expert teams through the United Nations Environment Program to aid the extension of biomonitoring, bioassessment, and river rehabilitation knowledge globally.

Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates

Benthic macroinvertebrates are among the most used biological quality elements for assessing the condition of all types of aquatic ecosystems worldwide (i.e., fresh water, transitional, and marine). Current morphology-based assessments have several limitations that may be circumvented by using DNA-based approaches. Here, we present a comprehensive review of 90 publications on the use of DNA metabarcoding of benthic macroinvertebrates in aquatic ecosystems bioassessments. Metabarcoding of bulk macrozoobenthos has been preferentially used in fresh waters, whereas in marine waters, environmental DNA (eDNA) from sediment and bulk communities from deployed artificial structures has been favored. DNA extraction has been done predominantly through commercial kits, and cytochrome c oxidase subunit I (COI) has been, by far, the most used marker, occasionally combined with others, namely, the 18S rRNA gene. Current limitations include the lack of standardized protocols and broad-coverage primers, the incompleteness of reference libraries, and the inability to reliably extrapolate abundance data. In addition, morphology versus DNA benchmarking of ecological status and biotic indexes are required to allow general worldwide implementation and higher end-user confidence. The increased sensitivity, high throughput, and faster execution of DNA metabarcoding can provide much higher spatial and temporal data resolution on aquatic ecological status, thereby being more responsive to immediate management needs.

Adding DNA barcoding to stream monitoring protocols - What's the additional value and congruence between morphological and molecular identification approaches?

Although aquatic macroinvertebrates and freshwater fishes are important indicators for freshwater quality assessments, the morphological identification to species-level is often impossible and thus especially in many invertebrate taxa not mandatory during Water Framework Directive monitoring, a pragmatism that potentially leads to information loss. Here, we focus on the freshwater fauna of the River Sieg (Germany) to test congruence and additional value in taxa detection and taxonomic resolution of DNA barcoding vs. morphology-based identification in monitoring routines. Prior generated morphological identifications of juvenile fishes and aquatic macroinvertebrates were directly compared to species assignments using the identification engine of the Barcode of Life Data System. In 18% of the invertebrates morphology allowed only assignments to higher systematic entities, but DNA barcoding lead to species-level assignment. Dissimilarities between the two approaches occurred in 7% of the invertebrates and in 1% of the fishes. The 18 fish species were assigned to 20 molecular barcode index numbers, the 104 aquatic invertebrate taxa to 113 molecular entities. Although the cost-benefit analysis of both methods showed that DNA barcoding is still more expensive (5.30–8.60€ per sample) and time consuming (12.5h), the results emphasize the potential to increase taxonomic resolution and gain a more complete profile of biodiversity, especially in invertebrates. The provided reference DNA barcodes help building the foundation for metabarcoding approaches, which provide faster sample processing and more cost-efficient ecological status determination.

Functional Feeding Group composition and attributes: evaluation of freshwater ecosystems in Atlantic Forest, Brazil

Abstract: Benthic macroinvertebrates Functional Feeding Group (FFG) have been used to determine aquatic assemblage dynamics and as a biomonitoring tool. The main goals of this study were to assess the effects of stream variables on the abundance and richness of FFGs and evaluate ecosystem attributes (FFG ratios) as a tool to assess ecological conditions of Atlantic Rainforest streams. We sampled 146 sites with different impairment conditions in Rio de Janeiro, Brazil. Richness was significantly different among impairment conditions for all FFGs. Mixed-effect models show that aquatic macroinvertebrate FFGs differed in their responses to abiotic variables for abundance and richness. Also, they were reduced in the impaired sites when compared to intermediate and reference sites. The FFG ratio indicated significant differences along the impairment gradient. The FFG ratio analysis was shown to be a fast and cheap tool that can be used for monitoring aquatic ecosystems in the Atlantic Forest biome. However, further studies are required to calibrate the method specifically for the Atlantic Forest region.

Ecological causal assessment of benthic condition in the oil sands region, Athabasca River, Canada

Contaminant loads to rivers of the Canadian oil sands region are linked to industrial and natural sources. To date, biomonitoring studies have been unable to unequivocally assess potential environmental impacts associated with this development. As part of the Joint Alberta-Canada Oil Sands Monitoring initiative, we aimed to assess cumulative effects of anthropogenic activities and exposure to natural bitumen geology on benthic macroinvertebrate assemblages in the lower Athabasca River. We examined associations among macroinvertebrates and environmental correlates, such as nutrients, ions, metals, polycyclic aromatic compounds, and total suspended solids. The study design included sites within and outside the mineable bitumen deposits, within and outside of the active mining and extraction area, and above and below municipal sewage effluents. We predicted observing a negative association between ecological condition of the river and exposure to natural bitumen and oil sands activity. However, contaminant concentrations in water and sediment were far below known toxicity thresholds, and benthic macroinvertebrate assemblages in sites exposed to oil sands mining activities appeared more affected by nutrient enrichment from the MSE than contaminants from mining or natural bitumen. Although sites within the area of intense oil sands activity showed signs of mild environmental stress, assemblage pattern was more strongly associated with MSE nutrient enrichment than to diffuse contamination from either natural bitumen or oil sands mining. Enrichment likely increases food resources available to consumers, thereby potentially masking toxic responses of consumers to contaminants. Current regulations prohibit the direct release of oil sands contaminants to waterways, with diffuse atmospheric deposition of aerial emissions and fugitive dust the main contaminant pathways to freshwaters. As the storage capacity of tailings ponds is reached, this nutrient-contaminant pattern could change if the river receives the proposed direct release of treated oil sands process water. Focused investigation-of-cause studies are required to better assess the consequences of cumulative interactions and ecological effects of nutrients and contaminant exposure in this system.

Freshwater diatom biomonitoring through benthic kick-net metabarcoding

Biomonitoring is an essential tool for assessing ecological conditions and informing management strategies. The application of DNA metabarcoding and high throughput sequencing has improved data quantity and resolution for biomonitoring of taxa such as macroinvertebrates, yet, there remains the need to optimise these methods for other taxonomic groups. Diatoms have a longstanding history in freshwater biomonitoring as bioindicators of water quality status. However, multi-substrate periphyton collection, a common diatom sampling practice, is time-consuming and thus costly in terms of labour. This study examined whether the benthic kick-net technique used for macroinvertebrate biomonitoring could be applied to bulk-sample diatoms for metabarcoding. To test this approach, we collected samples using both conventional multi-substrate microhabitat periphyton collections and bulk-tissue kick-net methodologies in parallel from replicated sites with different habitat status (good/fair). We found there was no significant difference in community assemblages between conventional periphyton collection and kick-net methodologies or site status, but there was significant difference between diatom communities depending on site (P = 0.042). These results show the diatom taxonomic coverage achieved through DNA metabarcoding of kick-net is suitable for ecological biomonitoring applications. The shift to a more robust sampling approach and capturing diatoms as well as macroinvertebrates in a single sampling event has the potential to significantly improve efficiency of biomonitoring programmes that currently only use the kick-net technique to sample macroinvertebrates.

Small is better: comparing the efficiency of two Surber samplers' sizes for biomonitoring programs in tropical headwater streams in the Amazon region

This study aimed to compare the efficiency of two different sizes of the Surber sampler to assess benthic macroinvertebrates in headwater streams in two Amazonian regions. Two Surber samplers of different sizes were used, one measuring 20 × 20 cm and the other 30 × 30 cm, both with a 0.25-mm net. The number of replicates taken was 6 for the smaller sampler and 3 for the bigger one, maintaining approximately the same total sampled area. The study was carried out in 12 headwater streams with different environmental conditions. Biological metrics were calculated for each size at each site and compared within each stream health category. A two-way analysis of similarities test was performed to compare the community structure assessed by each method at each stream. A normalized sampling effort was used to quantify the number of samples required to correctly sample each site. The data did not show a significant difference between the two sizes regarding the taxonomic recruitment and the community structure sampled at each stream, but differences were found between the two sizes in dominance values and in Shannon index scores for the natural sites. Furthermore, the smaller Surber was able to assess 70% of the estimated richness in all sites, which suggests that it is better to assess benthic macroinvertebrates than the larger Surber. Moreover, the smaller Surber is easier to transport in the field, reducing the effort of the technician, and takes less time to sort the material collected with it, which can reduce the sample processing effort, therefore reducing the cost of the project.

Density and diversity of macroinvertebrates in Colombian Andean streams impacted by mining, agriculture and cattle production

Background

Mining, agriculture and cattle production are activities that threaten the quality and quantity of water resources in the Colombian Andes. However, many drainage basins in this region have not been subjected to simultaneous evaluation of the impact these activities have on the density, diversity and composition of aquatic macroinvertebrates (AMI). The first two of these ecological variables are expected to decrease drastically from zones with no apparent impact towards areas with anthropogenic activity, which areas with mining will present the most impoverished AMI community.

Methods

We evaluated the density, diversity and composition dissimilarity of AMI in streams impacted by gold mining, agriculture and cattle production. Two reference streams were also studied. Six benthic samplings were conducted bimonthly (Feb 2014–Feb 2015) using a Surber net. Water samples were taken in order to make environmental evaluation among the aforementioned streams, including hydrological, physicochemical and bacteriological parameters (HPCB). Diversity was evaluated as the effective number of RTUs—recognizable taxonomic units—by comparing the richness, typical diversity, and effective number of the most abundant RTUs. Compositional dissimilarity was examined with nMDS and CCA analysis.

Results

A total of 7,483 organisms were collected: 14 orders, 42 families and 71 RTUs. Our prediction regarding the density and diversity of AMI (Reference > Cattle production > Agriculture > Mining) was partially fulfilled, since the agriculture-dominated stream presented a more impoverished AMI community than that of the gold mining stream. However, these streams presented lower diversity than the cattle production and reference streams, and the AMI density only differed significantly between one reference stream and the agriculture stream. The AMI composition in the agriculture-dominated stream clearly differed from that of the other streams.

Discussion

The observation of a more impoverished AMI community in agricultural production areas compared to those with mining or cattle production may reflect the importance of the remaining riparian vegetation, which was scarce at the stream with agricultural activity. Moreover, the low diversity, and mainly the reduced AMI richness, in the agriculture stream coincided with the absence of insect genera are intolerant to deterioration of the biological and physicochemical conditions of the water (e.g. Anacroneuria).

Conclusions

The results suggest that the local impact of agricultural activities may be of equal or greater magnitude than that of mining in terms of AMI density, diversity and composition, in the Colombian Andean riverscape. Future studies should systematically evaluate, throughout the annual cycle, the relative effects of the productive land use, the remaining native vegetation cover and the consequent changes in the HPCB parameters of the water on AMI communities in Colombian Andean basins.