Bioremediation of copper-contaminated soils by bacteria

Genetic Adaptations and Mechanistic Insights Into Bacterial Bioremediation in Ecosystems

Metal pollution poses significant threats to the ecosystem and human health, demanding effective remediation strategies. Bioremediation, which leverages the unique metal-resistant genes found in bacteria, offers a cost-effective and efficient solution to heavy metal contamination. Genes such as Cad, Chr, Cop, and others provide pathways to improve the detoxification of the ecosystem. Through multiple techniques, genetic engineering makes bacterial genomes more capable of improving metal detoxification; nonetheless, there are still unanswered questions regarding the nature of new metal-resistant genes. This article examines bacteria's complex processes to detoxify toxic metals, including biosorption, bioaccumulation, bio-precipitation, and bioleaching. It also explores essential genes, proteins, signaling mechanisms, and bacterial biomarkers involved in breaking toxic metals.

Remediation of heavy metals polluted soil environment: A critical review on biological approaches

Heavy metals (HMs) pollution is a globally emerging concern. It is difficult to cost-effectively combat such HMs polluted soil environments. The efficient remediation of HMs polluted soil is crucial to protect human health and ecological security that could be carried out by several methods. Amidst, biological remediation is the most affordable and ecological. This review focused on the principles, mechanisms, performances, and influential factors in bioremediation of HMs polluted soil. In microbial remediation, microbes can alter metallic compounds in soils. They transform these compounds into their metabolism through biosorption and bioprecipitation. The secreted microbial enzymes act as transformers and assist in HMs immobilization. The synergistic microbial effect can further improve HMs removal. In bioleaching, the microbial activity can simultaneously produce H2SO4 or organic acids and leach HMs. The production of acids and the metabolism of bacteria and fungi transform metallic compounds to soluble and extractable form. The key bioleaching mechanisms are acidolysis, complexolysis, redoxolysis and bioaccumulation. In phytoremediation, hyperaccumulator plants and their rhizospheric microbes absorb HMs by roots through absorption, cation exchange, filtration, and chemical changes. Then they exert different detoxification mechanisms. The detoxified HMs are then transferred and accumulated in their harvestable tissues. Plant growth-promoting bacteria can promote phytoremediation efficiency; however, use of chelants have adverse effects. There are some other biological methods for the remediation of HMs polluted soil environment that are not extensively practiced. Finally, the findings of this review will assist the practitioners and researchers to select the appropriate bioremediation approach for a specific soil environment.

Long-term and combined heavy-metal contamination forms a unique microbiome and resistome: A case study in a Yellow River tributary sediments

Microorganisms have developed mechanisms to adapt to environmental stress, but how microbial communities adapt to long-term and combined heavy-metal contamination under natural environmental conditions remains unclear. Specifically, this study analyzed the characteristics of heavy metal composition, microbial community, and heavy metal resistance genes (MRGs) in sediments along Mang River, a tributary of the Yellow River, which has been heavily polluted by industrial production for more than 40 years. The results showed that the concentrations of Cr, Zn, Pb, Cu and As in most sediments were higher than the ambient background values. Bringing the heavy metals speciation and concentration into the risk evaluation method, two-thirds of the sediment samples were at or above the moderate risk level, and the ecological risk of combined heavy metals in the sediments decreased along the river stream. The high ecological risk of heavy metals affected the microbial community structure, metabolic pathways and MRG distribution. The formation of a HM-resistant microbiome possibly occurred through the spread of insertion sequences (ISs) carrying multiple MRGs, the types of ISs carrying MRGs outnumber those of plasmids, and the quantity of MRGs on ISs is also higher than that on plasmids. These findings could improve our understanding of the adaptation mechanism of microbial communities to long-term combined heavy metal contamination.

Microbial strategies for copper pollution remediation: Mechanistic insights and recent advances

Environmental contamination is aninsistent concern affecting human health and the ecosystem. Wastewater, containing heavy metals from industrial activities, significantly contributes to escalating water pollution. These metals can bioaccumulate in food chains, posing health risks even at low concentrations. Copper (Cu), an essential micronutrient, becomes toxic at high levels. Activities like mining and fungicide use have led to Copper contamination in soil, water, and sediment beyond safe levels. Copper widely used in industries, demands restraint of heavy metal ion release into wastewater for ecosystem ultrafiltration, membrane filtration, nanofiltration, and reverse osmosis, combat heavy metal pollution, with emphasis on copper.Physical and chemical approaches are efficient, large-scale feasibility may have drawbackssuch as they are costly, result in the production of sludge. In contrast, bioremediation, microbial intervention offers eco-friendly solutions for copper-contaminated soil. Bacteria and fungi facilitate these bioremediation avenues as cost-effective alternatives. This review article emphasizes on physical, chemical, and biological methods for removal of copper from the wastewater as well asdetailing microorganism's mechanisms to mobilize or immobilize copper in wastewater and soil.

DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity

Although copper (Cu2+) is a micronutrient, the metal may be toxic if present in high concentrations in soil ecosystems and subsequently affect various organisms, ranging from microorganisms to earthworms. We performed a microcosm study with an array of Cu2+ concentrations, with a specific focus on Cercozoa, an important protozoan group in most soil food webs. Research on Cercozoa is still scarce in terms of both diversity and ecology; hence, to explore this group in more depth, we used high-throughput sequencing to detect Cu2+ induced community changes. Increased levels of Cu2+ caused a shift in the cercozoan community, and we observed decreased cercozoan relative abundance across the majority of orders, families and genera. Due to their key role in soil food webs, especially as bacterial predators and providers of nutrients to plants, the reduction of cercozoan abundance and diversity may seriously affect soil functionality. Our results indicate that the increase of Cu2+ concentrations in the soil could potentially have this effect and the consequences need exploration.

An Overview of Bacteria-Mediated Heavy Metal Bioremediation Strategies

Contamination-free groundwater is considered a good source of potable water. Even in the twenty-first century, over 90 percent of the population is reliant on groundwater resources for their lives. Groundwater influences the economical state, industrial development, ecological system, and agricultural and global health conditions worldwide. However, different natural and artificial processes are gradually polluting groundwater and drinking water systems throughout the world. Toxic metalloids are one of the major sources that pollute the water system. In this review work, we have collected and analyzed information on metal-resistant bacteria along with their genetic information and remediation mechanisms of twenty different metal ions [arsenic (As), mercury (Hg), lead (Pb), chromium (Cr), iron (Fe), copper (Cu), cadmium (Cd), palladium (Pd), zinc (Zn), cobalt (Co), antimony (Sb), gold (Au), silver (Ag), platinum (Pt), selenium (Se), manganese (Mn), molybdenum (Mo), nickel (Ni), tungsten (W), and uranium (U)]. We have surveyed the scientific information available on bacteria-mediated bioremediation of various metals and presented the data with responsible genes and proteins that contribute to bioremediation, bioaccumulation, and biosorption mechanisms. Knowledge of the genes responsible and self-defense mechanisms of diverse metal-resistance bacteria would help us to engineer processes involving multi-metal-resistant bacteria that may reduce metal toxicity in the environment.

Impact of nCuO containing treated wastewater on soil microbes and dissolved organic matter in paddy field leachate

Using treated wastewater (TWW) resources in agriculture is a major pathway for disseminating nanoparticles. Copper-oxide nanoparticles (nCuO) offer potential benefits, but their presence in the environment poses risks to agricultural and environmental sustainability. This study examined soil microbial transformations and the composition of leachate dissolved organic matter (DOM) of paddy soils irrigated with nCuO-contaminated TWW at different concentrations (T2: 0.02 mgL-1, T3: 0.2 mgL-1, T4: 2.0 mgL-1) and examined the differences in Cu source (T5: 0.2 mgL-1 CuSO4). Results showed negative impacts on the absolute microbial abundance with up to 46 % reduction relative to the control treatment (T1). Changes in relative abundance of specific microbes at the genus level deviated from the corresponding phyla. Acidobacteria, Actinobacteria, Chloroflexi, and Verrucomicrobia phyla increased in the surface (0-3 cm) and subsurface (3-15 cm) layers responding differently to nCuO. In the 0-3 cm layer, Nitrospirae, Euryarchaeota, and Crenarchaeota increased, but only Dechloromonas genus from Proteobacteria increased with increasing nCuO. No significant variations were observed in the DOM composition, except in T4, which had a significantly low content of dissolved organic carbon (DOC), total dissolved nitrogen, and terrestrial humic-like and protein-like components. Ninety-eight distinct genera were identified, of which 44%, including 15 bacteria and two archaea, varied between the surface and subsurface, among treatments, and significantly correlated with more DOM parameters in the subsurface. T4 had the highest microbial diversity in the 0-3 layer, and Cu treatments slightly increased the diversity index in the subsurface. Moreover, the effects differed by Cu source, with T3 showing 10 % more reduction in the subsurface and 17 % less reduction in the surface than T5. The variable microbial responses to nCuO and their strong correlations with DOM highlight the need to consider the potential consequences of low nCuO concentrations on biogeochemical cycles.

Macroporous and ultralight polyethyleneimine-grafted chitosan/nano-TiO2 foam as a novel adsorbent with antibacterial activity for the efficient U(VI) removal

The radioactive contamination from the excessive discharge of uranium-containing wastewater seriously threatens environmental safety and human health. Herein, macroporous and ultralight polyethyleneimine-grafted chitosan/nano-TiO2 composite foam (PCT) with antibacterial activity was synthesized, which could quickly remove U(VI) from solution. Among different PCT adsorbents, PCT-2 had the best adsorption performance for U(VI), which could be due to its honeycomb macroporous structures and the presence of abundant amino/imine groups. The kinetics and adsorption isotherms data were found in agreement with the pseudo-second-order model and the Langmuir model, respectively, indicating chemisorption or complexation as the main adsorption mechanism. The saturated adsorption capacity of PCT-2 for U(VI) reaches 259.91 mg/g at pH 5.0 and 298 K. The PCT-2 also presents good selectivity for U(VI) with the coefficient (βU/M) order of Na+ > K+ > Mg2+ > Ca2+ > Ni2+ > Co2+ > Mn2+ > Al3+ > Fe3+ > Cu2+. The adsorption mechanism was explored using FT-IR and XPS analysis, indicating that amino/imine groups and hydroxyl groups are responsible for U(VI) complexation. Thermodynamic calculations show that U(VI) adsorption is endothermic and spontaneous. The ease of preparation, excellent adsorption performance and environmental friendliness of PCT-2 make it a novel adsorbent with antibacterial activity for radioactive contamination control.

A review on heavy metal biosorption utilizing modified chitosan

Heavy metal pollution in water bodies is a global concern. The prominent source of metal contamination in aqueous streams and groundwater is wastewater containing heavy metal ions. Elevated concentrations of heavy metals in water bodies can have a negative impact on water quality and public health. The most effective way to remove metal contaminants from drinking water is thought to be adsorption. A deacetylated derivative of chitin, chitosan, has a wide range of commercial uses since it is biocompatible, nontoxic, and biodegradable. Due to its exceptional adsorption behavior toward numerous hazardous heavy metals from aqueous solutions, chitosan and its modifications have drawn a lot of interest in recent years. Due to its remarkable adsorption behavior toward a range of dangerous heavy metals, chitosan is a possible agent for eliminating metals from aqueous solutions. The review has focused on the ideas of biosorption, its kinds, architectures, and characteristics, as well as using modified (physically and chemically modified) chitosan, blends, and composites to remove heavy metals from water. The main objective of the review is to describe the most important aspects of chitosan-based adsorbents that might be beneficial for enhancing the adsorption capabilities of modified chitosan and promoting the usage of this material in the removal of heavy metal pollutants.

Decoupled responses of the copepod Eurytemora affinis transcriptome and its microbiota to dissolved copper exposure

Chemical contamination is a common threat to biota thriving in estuarine and coastal ecosystems. Of particular importance is that trace metals tend to accumulate and exert deleterious effects on small invertebrates such as zooplankton, which are essential trophic links between phytoplankton and higher-level consumers in aquatic food webs. Beyond the direct effects of the contamination, we hypothesized that metal exposure could also affect the zooplankton microbiota, which in turn might further impair host fitness. To assess this assumption, copepods (Eurytemora affinis) were sampled in the oligo-mesohaline zone of the Seine estuary and exposed to dissolved copper (25 µg.L^-1) over a 72-hour time period. The copepod response to copper treatment was assessed by determining transcriptomic changes in E. affinis and the alteration of its microbiota. Unexpectedly, very few genes were differentially expressed in the copper-treated copepods compared to the controls for both male and female samples, while a clear dichotomy between sex was highlighted with 80% of the genes showing sex-biased expression. In contrast, copper increased the taxonomic diversity of the microbiota and resulted in substantial compositional changes at both the phyla and genus levels. Phylogenetic reconstruction of the microbiota further suggested that copper mitigated the phylogenetic relatedness of taxa at the basal tree structure of the phylogeny, whereas it strengthened it at the terminal branches. Increased terminal phylogenetic clustering in the copper-treated copepods coincided with higher proportions of bacterial genera previously identified as copper resistant (e.g., Pseudomonas, Acinetobacter, Alkanindiges, Colwellia) and a higher relative abundance of the copA_ox gene encoding a periplasmic inducible multi-copper oxidase. The enrichment in micro-organisms likely to perform copper sequestration and/or enzymatic transformation processes, underlines the need to consider the microbial component during evaluation of the vulnerability of zooplankton to metallic stress.

Copper-Contaminated Substrate Biosorption by Penicillium sp. Isolated from Kefir Grains

In this bioremediation study, the fungus Penicillium sp. isolated from kefir grains was evaluated for its resistance to copper in the culture medium. Penicillium sp. was cultivated in liquid medium prepared using 2% malt-agar at pH 7.0. Biomass of the fungus was significantly reduced, but only when 800 mg·L^-1 of Cu(NO₃)₂ copper nitrate was used. The effect on radial growth of the fungus in experiments combining different pH values and the inorganic contaminant showed an inhibition of 73% at pH 4.0, 75% at pH 7.0 and 77% at pH 9.0 in liquid medium. Thus, even though the growth of Penicillium sp. could be inhibited with relatively high doses of copper nitrate, images obtained with scanning electron microscopy showed the preservation of fungal cell integrity. Therefore, it can be concluded that Penicillium sp. isolated from kefir grains can survive while performing bioremediation to minimize the negative effects of copper on the environment through biosorption.

Potential and prospects of Actinobacteria in the bioremediation of environmental pollutants: Cellular mechanisms and genetic regulations

Increasing industrialization and anthropogenic activities have resulted in the release of a wide variety of pollutants into the environment including pesticides, polycyclic aromatic hydrocarbons (PAHs), and heavy metals. These pollutants pose a serious threat to human health as well as to the ecosystem. Thus, the removal of these compounds from the environment is highly important. Mitigation of the environmental pollution caused by these pollutants via bioremediation has become a promising approach nowadays. Actinobacteria are a group of eubacteria mostly known for their ability to produce secondary metabolites. The morphological features such as spore formation, filamentous growth, higher surface area to volume ratio, and cellular mechanisms like EPS secretion, and siderophore production in Actinobacteria render higher resistance and biodegradation ability. In addition, these bacteria possess several oxidoreductase systems (oxyR, catR, furA, etc.) which help in bioremediation. Actinobacteria genera including Arthrobacter, Rhodococcus, Streptomyces, Nocardia, Microbacterium, etc. have shown great potential for the bioremediation of various pollutants. In this review, the bioremediation ability of these bacteria has been discussed in detail. The utilization of various genera of Actinobacteria for the biodegradation of organic pollutants, including pesticides and PAHs, and inorganic pollutants like heavy metals has been described. In addition, the cellular mechanisms in these microbes which help to withstand oxidative stress have been discussed. Finally, this review explores the Actinobacteria mediated strategies and recent technologies such as the utilization of mixed cultures, cell immobilization, plant-microbe interaction, utilization of biosurfactants and nanoparticles, etc., to enhance the bioremediation of various environmental pollutants.

Removal of Copper Ions from Wastewater: A Review

Copper pollution of the world's water resources is becoming increasingly serious and poses a serious threat to human health and aquatic ecosystems. With reported copper concentrations in wastewater ranging from approximately 2.5 mg/L to 10,000 mg/L, a summary of remediation techniques for different contamination scenarios is essential. Therefore, it is important to develop low-cost, feasible, and sustainable wastewater removal technologies. Various methods for the removal of heavy metals from wastewater have been extensively studied in recent years. This paper reviews the current methods used to treat Cu(II)-containing wastewater and evaluates these technologies and their health effects. These technologies include membrane separation, ion exchange, chemical precipitation, electrochemistry, adsorption, and biotechnology. Thus, in this paper, we review the efforts and technological advances made so far in the pursuit of more efficient removal and recovery of Cu(II) from industrial wastewater and compare the advantages and disadvantages of each technology in terms of research prospects, technical bottlenecks, and application scenarios. Meanwhile, this study points out that achieving low health risk effluent through technology coupling is the focus of future research.

A review on the bioleaching of toxic metal(loid)s from contaminated soil: Insight into the mechanism of action and the role of influencing factors

The anthropogenic activities in agriculture, industrialization, mining, and metallurgy combined with the natural weathering of rocks, have led to severe contamination of soils by toxic metal(loid)s. In an attempt to remediate these polluted sites, a plethora of conventional approaches such as Solidification/Stabilization (S/S), soil washing, electrokinetic remediation, and chemical oxidation/reduction have been used for the immobilization and removal of toxic metal(loid)s in the soil. However, these conventional methods are associated with certain limitations. These limitations include high operational costs, high energy demands, post-waste disposal difficulties, and secondary pollution. Bioleaching has proven to be a promising alternative to these conventional approaches in removing toxic metal(loid)s from contaminated soil as it is cost-effective, environmentally friendly, and esthetically pleasing. The bioleaching process is influenced by factors including pH, temperature, oxygen, and carbon dioxide supply, as well as nutrients in the medium. It is crucial to monitor these parameters before and throughout the reaction since a change in any, for instance, pH during the reaction, can alter the microbial activity and, therefore, the rate of metal leaching. However, research on these influencing factors and recent innovations has brought significant progress in bioleaching over the years. This critical review, therefore, presents the current approaches to bioleaching and the mechanisms involved in removing toxic metal(loid)s from contaminated soil. We further examined and discussed the fundamental principles of various influencing factors that necessitate optimization in the bioleaching process. Additionally, the future perspectives on adding omics for bioleaching as an emerging technology are discussed.

Bioremediation of Copper- and Chromium-Contaminated Soils Using Agrostis capillaris L., Festuca pratensis Huds., and Poa pratensis L. Mixture of Lawn Grasses

Environmental pollution by toxic metals is a common ecological problem. Chromium and copper compounds released into the environment as a result of human-made stress pose a serious threat to living organisms. Phytoremediation is a promising method of toxic metals removal from contaminated sites. The concentration of metals in grass biomass—in the roots and aerial parts—was determined by X-ray fluorescence analysis. The estimation of numbers of microorganisms was conducted by a tenfold dilution and spread-plating method. It was shown that lawn grass accumulated from 69.1 ± 13.2 to 497.7 ± 74.1 mg/kg Cu and Cr during the growth in the contaminated soil with 50, 100, and 200 mg/kg of metals. In general, there was a pattern of accumulation of copper in the aerial part of the grass and chromium in the roots. Thus, the total copper concentration in the aerial part ranged from 105.2 ± 23.8 to 497.7 ± 74.1 mg/kg of plant biomass. The total chromium concentration in the roots ranged from 156.4 ± 47.9 to 426.8 ± 62.5 mg/kg. The viability of the soil microbiome was not inhibited at such metal concentrations. The obtained data allow lawn grass to be considered as promising for the phytoremediation of contaminated areas.

Advantages and limits to copper phytoextraction in vineyards

Copper (Cu) contamination of soils may alter the functioning and sustainability of vineyard ecosystems. Cultivating Cu-extracting plants in vineyard inter-rows, or phytoextraction, is one possible way currently under consideration in agroecology to reduce Cu contamination of vineyard topsoils. This option is rarely used, mainly because Cu phytoextraction yields are too low to significantly reduce contamination due to the relatively "low" phytoavailability of Cu in the soil (compared to other trace metals) and its preferential accumulation in the roots of most extracting plants. This article describes the main practices and associated constraints that could theoretically be used to maximize Cu phytoextraction at field scale, including the use of Cu-accumulating plants grown (i) with acidifying plants (e.g., leguminous plants), and/or (ii) in the presence of acidifying fertilizers (ammonium, elemental sulfur), or (iii) with soluble "biochelators" added to the soil such as natural humic substances or metabolites produced by rhizospheric bacteria such as siderophores, in the inter-rows. This discussion article also provides an overview of the possible ways to exploit Cu-enriched biomass, notably through ecocatalysis or biofortification of animal feed.

Field observations to establish the impact of fluvial flooding on potentially toxic element (PTE) mobility in floodplain soils

Inundation of river water during flooding deposits contaminated sediments onto floodplain topsoil. Historically, floodplains were considered an important sink for potentially toxic elements (PTEs). With increasing flood frequency and duration, due to climate change and land use change, it is important to understand the impact that further flooding may have on this legacy contamination. In this study a field-based approach was taken, extracting soil pore waters by centrifugation of soils sampled on multiple occasions from multiple locations across a floodplain site, which lies adjacent to the River Loddon in southeast England. Flooding generally decreased pore water PTE concentrations and significantly lower pore water concentrations of Cd, Cu, and Cr were found post-flood compared to pre-flood. The dominant process responsible for this observation was precipitation with sulphides resulting in PTE removal from the pore water post-flood. The changes in pH were found to be associated with the decreased pore water concentration of Cu, which suggests the pH rise may have aided adsorption mechanisms or precipitation with phosphates. The impact of flooding on the release and retention of PTEs in floodplain soils is the net effect of several key processes occurring concurrently. It is important to understand the dominant processes that drive mobility of individual PTEs on specific floodplains so that site-specific predictions can determine the impact of future floods on the environmental fate of legacy contaminants.

Microbial response and adaption to thallium contamination in soil profiles

Thallium (Tl) is a trace metal with high toxicity. Comprehensive investigation of spatial distribution of Tl and microorganism is still limited in soils from mining area. In this study, 16S rRNA sequencing and network analysis were used for deciphering the co-occurrence patterns of bacterial communities in two different types of soil profiles around a typical Tl-bearing pyrite mine. The results showed that geochemical parameters (such as pH, S, Tl, Fe and TOM) were the driving forces for shaping the vertical distribution of microbial community. According to network analysis, a wide diversity of microbial modules were present in both soil profiles and affected by depth, significantly associated with variations in Tl geochemical fractionation. Phylogenetic information further unveiled that the microbial modules were mainly dominated by Fe reducing bacteria (FeRB), Fe oxidizing bacteria (FeOB), S oxidizing bacteria and Mn reducing bacteria. The results of metagenome indicated that Fe, Mn and S cycle in soil are closely involved in the biogeochemical cycle of Tl. The findings of co-occurrence patterns in the bacterial network and correlation between microorganisms and different geochemical fractions of Tl may benefit the strategy of bioremediation of Tl-contaminated soils with indigenous microbes.

Cu phytoextraction and biomass utilization as essential trace element feed supplements for livestock

Copper (Cu), as an essential element, is added to animal feed to stimulate growth and prevent disease. The forage crop alfalfa (Medicago sativa L.) produced during Cu phytoextraction may be considered a biofortified crop to substitute the Cu feed additives for livestock production, beneficially alleviating Cu contamination in soils and reducing its input into agriculture systems. To assess this, alfalfa was grown in three similar soils with different Cu levels, i.e., 11, 439 and 779 mg kg^-1 for uncontaminated soil (A), moderately Cu-contaminated soil (B) and highly Cu-contaminated soil (C), respectively. EDDS (Ethylenediamine-N,N'-disuccinic acid) was applied to the soils seven days before the first cutting at four rates (0, 0.5, 2 and 5 mmol kg^-1) to enhance bioavailable Cu uptake. Alfalfa grew well in soils A and B but not in the highly Cu-contaminated soil. After applying EDDS, a significant biomass reduction of the first cutting shoot was only observed with 5 mmol kg^-1 EDDS in the highly Cu-contaminated soil, with a 45% (P < 0.05) decrease when compared to the control. Alfalfa grown in the three soils gradually wilted after the first cutting with 5 mmol kg^-1 EDDS, and Cu concentrations in the first cutting shoot were augmented strongly, by 250% (P < 0.05), 3500% (P < 0.05) and 6700% (P < 0.05) compared to the controls, respectively. Cu concentrations in alfalfa shoots were found to be higher in this study than in some fodder plants and further augmented in soils with higher Cu levels and with EDDS application. These findings suggest that alfalfa grown on clean soils or soils with up to 450 mg Cu kg^-1 (with appropriate EDDS dosages) has the potential to be considered as a partial Cu supplementation for livestock. This research laid the foundation for the integration between Cu-phytoextraction and Cu-biofortification for livestock.

Antimicrobial Activity of Metals and Metalloids

Competition shapes evolution. Toxic metals and metalloids have exerted selective pressure on life since the rise of the first organisms on the Earth, which has led to the evolution and acquisition of resistance mechanisms against them, as well as mechanisms to weaponize them. Microorganisms exploit antimicrobial metals and metalloids to gain competitive advantage over other members of microbial communities. This exerts a strong selective pressure that drives evolution of resistance. This review describes, with a focus on arsenic and copper, how microorganisms exploit metals and metalloids for predation and how metal- and metalloid-dependent predation may have been a driving force for evolution of microbial resistance against metals and metalloids. Expected final online publication date for the Annual Review of Microbiology, Volume 75 is October 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Extraction of valuable metals from discarded AMOLED displays in smartphones using Bacillus foraminis as an alkali-tolerant strain

With the alarming rate of e-waste generation, resource recovery from secondary metal sources is essential for sustainable resource utilization and to prevent the release of potentially toxic elements into the environment. In the current study, the first-time extraction of Ag, Mo, and Cu from active-matrix organic light-emitting diode (AMOLED) screens of discarded smartphones have been achieved using organic acids produced by Bacillus foraminis cultured on a modified Horikoshi medium. The influences of initial pH, inoculation size, and pulp density on the bioleaching process were evaluated over six-day experiment. Maximum extraction of Ag, Mo, and Cu (100, 56.8, and 41.4%) at optimal values of three investigated factors was obtained over a 12-day bioleaching experiment. A diverse assemblage of organic acid was produced in the optimized bioleaching condition, including tartaric (12.1 mM), formic (49.8 mM), acetic (21.5 mM), lactic (78.5 mM), citric (2.7 mM), and propionic (69.6 mM) acid. The contact angle analysis highlighted more hydrophobicity of powder after the bioleaching. FTIR and CHNO data also confirmed the role of bioleaching in the powder wettability alteration. The sequential extraction method revealed high mobility of In, Fe, Co, Cu, Cr, and Mo and low mobility of Ag. The results exhibited high tolerance of alkali-tolerant bacteria to potentially toxic elements and its superior performance in the bioleaching of discarded mobile screens at high pulp density.

Metal(loid) speciation and transformation by aerobic methanotrophs

Manufacturing and resource industries are the key drivers for economic growth with a huge environmental cost (e.g. discharge of industrial effluents and post-mining substrates). Pollutants from waste streams, either organic or inorganic (e.g. heavy metals), are prone to interact with their physical environment that not only affects the ecosystem health but also the livelihood of local communities. Unlike organic pollutants, heavy metals or trace metals (e.g. chromium, mercury) are non-biodegradable, bioaccumulate through food-web interactions and are likely to have a long-term impact on ecosystem health. Microorganisms provide varied ecosystem services including climate regulation, purification of groundwater, rehabilitation of contaminated sites by detoxifying pollutants. Recent studies have highlighted the potential of methanotrophs, a group of bacteria that can use methane as a sole carbon and energy source, to transform toxic metal (loids) such as chromium, mercury and selenium. In this review, we synthesise recent advances in the role of essential metals (e.g. copper) for methanotroph activity, uptake mechanisms alongside their potential to transform toxic heavy metal (loids). Case studies are presented on chromium, selenium and mercury pollution from the tanneries, coal burning and artisanal gold mining, respectively, which are particular problems in the developing economy that we propose may be suitable for remediation by methanotrophs. Video Abstract.

Characterizations of heavy metal contamination, microbial community, and resistance genes in a tailing of the largest copper mine in China

Copper mine tailings are causing great environmental concern nowadays due to their high contents of heavy metals. These hazards may release to air, water, and soil, posing great threat to the living organisms in the surroundings. In the present work, we profiled the heavy metal contents, microbiome and resistome of a mine tailing in Dexing Copper Mine, which is the largest open-pit copper mine in China. A total of 39.75 Gb clean data was generated by metagenomics sequencing and taxonomy analysis revealed Actinobacteria, Proteobacteria, Acidobacteria, Euryarchaeota, and Nitrospirae as the most abundant phylum in this tailing. In general, 76 heavy metal resistance genes (HMRGs) and 194 antimicrobial resistance genes (ARGs) were identified with merA and rpoB2 as the most abundant HMRG and ARG, respectively. We also compared the differences of heavy metal concentrations among the six sampling sites in the same tailing and found that significant differences exited in copper and zinc. Hierarchical cluster analysis showed that the samples from the six sampling sites were clustering in two groups based on heavy metal concentrations. Accordingly, clustering based on microbial composition and relative abundances of resistance genes exhibited the same clustering pattern, indicating a possible shaping influence of heavy metals on the microbiome and resistome in this tailing. Our work presented heavy metal contents, microbial composition and resistance genes in a copper mine tailing of the largest copper mine in China, and these data will of great use in the surveillance, maintenance, and remediation of this tailing.

Anaerobic Degradation of Environmentally Hazardous Aquatic Plant Pistia stratiotes and Soluble Cu(II) Detoxification by Methanogenic Granular Microbial Preparation

The aquatic plant Pistia stratiotes L. is environmentally hazardous and requires effective methods for its utilization. The harmfulness of these plants is determined by their excessive growth in water bodies and degradation of local aquatic ecosystems. Mechanical removal of these plants is widespread but requires fairly resource-intensive technology. However, these aquatic plants are polymer-containing substrates and have a great potential for conversion into bioenergy. The aim of the work was to determine the main patterns of Pistia stratiotes L. degradation via granular microbial preparation (GMP) to obtain biomethane gas while simultaneously detoxifying toxic copper compounds. The composition of the gas phase was determined via gas chromatography. The pH and redox potential parameters were determined potentiometrically, and Cu(II) concentration photocolorimetrically. Applying the preparation, high efficiency of biomethane fermentation of aquatic plants and Cu(II) detoxification were achieved. Biomethane yield reached 68.0 ± 11.1 L/kg VS of Pistia stratiotes L. biomass. The plants’ weight was decreased by 9 times. The Cu(II) was completely removed after 3 and 10 days of fermentation from initial concentrations of 100 ppm and 200 ppm, respectively. The result confirms the possibility of using the GMP to obtain biomethane from environmentally hazardous substrates and detoxify copper-contaminated fluids.

Proteome Changes Reveal the Protective Roles of Exogenous Citric Acid in Alleviating Cu Toxicity in Brassica napus L

Citric acid (CA), as an organic chelator, plays a vital role in alleviating copper (Cu) stress-mediated oxidative damage, wherein a number of molecular mechanisms alter in plants. However, it remains largely unknown how CA regulates differentially abundant proteins (DAPs) in response to Cu stress in Brassica napus L. In the present study, we aimed to investigate the proteome changes in the leaves of B. L. seedlings in response to CA-mediated alleviation of Cu stress. Exposure of 21-day-old seedlings to Cu (25 and 50 μM) and CA (1.0 mM) for 7 days exhibited a dramatic inhibition of overall growth and considerable increase in the enzymatic activities (POD, SOD, CAT). Using a label-free proteome approach, a total of 6345 proteins were identified in differentially treated leaves, from which 426 proteins were differentially expressed among the treatment groups. Gene ontology (GO) and KEGG pathways analysis revealed that most of the differential abundance proteins were found to be involved in energy and carbohydrate metabolism, photosynthesis, protein metabolism, stress and defense, metal detoxification, and cell wall reorganization. Our results suggest that the downregulation of chlorophyll biosynthetic proteins involved in photosynthesis were consistent with reduced chlorophyll content. The increased abundance of proteins involved in stress and defense indicates that these DAPs might provide significant insights into the adaptation of Brassica seedlings to Cu stress. The abundances of key proteins were further verified by monitoring the mRNA expression level of the respective transcripts. Taken together, these findings provide a potential molecular mechanism towards Cu stress tolerance and open a new route in accelerating the phytoextraction of Cu through exogenous application of CA in B. napus.

Synthetic biology approaches to copper remediation: bioleaching, accumulation and recycling

One of the current aims of synthetic biology is the development of novel microorganisms that can mine economically important elements from the environment or remediate toxic waste compounds. Copper, in particular, is a high-priority target for bioremediation owing to its extensive use in the food, metal and electronic industries and its resulting common presence as an environmental pollutant. Even though microbe-aided copper biomining is a mature technology, its application to waste treatment and remediation of contaminated sites still requires further research and development. Crucially, any engineered copper-remediating chassis must survive in copper-rich environments and adapt to copper toxicity; they also require bespoke adaptations to specifically extract copper and safely accumulate it as a human-recoverable deposit to enable biorecycling. Here, we review current strategies in copper bioremediation, biomining and biorecycling, as well as strategies that extant bacteria use to enhance copper tolerance, accumulation and mineralization in the native environment. By describing the existing toolbox of copper homeostasis proteins from naturally occurring bacteria, we show how these modular systems can be exploited through synthetic biology to enhance the properties of engineered microbes for biotechnological copper recovery applications.

Activation of the ROS/HO-1/NQO1 signaling pathway contributes to the copper-induced oxidative stress and autophagy in duck renal tubular epithelial cells

The aim of this study was to investigate the crosstalk between oxidative stress and autophagy through the ROS/HO-1/NQO1 pathway caused by copper (Cu). Duck renal tubular epithelial cells were treated in Cu sulfate (CuSO₄) (0, 100 and 200 μM) for 12 h, and in the combination of CuSO₄ (200 μM) and reactive oxygen species (ROS) scavenger (butyl hydroxyanisole, BHA, 100 μM), or HO-1 inhibitor (zinc protoporphyrin, ZnPP, 10 μM) for 12 h. Results revealed that Cu could significantly elevate the levels of intracellular ROS, superoxide dismutase, hydrogen peroxide, malondialdehyde, glutathione, simultaneously reduce catalase and glutathione peroxidase levels, and upregulate HO-1, SOD-1, CAT, NQO1, GCLM mRNA levels and HO-1, SOD-1 protein levels. Additionally, Cu could observably increase the number of autophagosomes, acidic vesicle organelles (AVOs) and LC3 puncta; upregulate mRNA levels of mTOR, Beclin-1, ATG7, ATG5, ATG3, LC3II and protein levels of Beclin-1, LC3II/LC3I, downregulate LC3I mRNA level. Both treatments with BHA and ZnPP could significantly alleviate the changes of antioxidant indexes levels and ROS accumulation, reduce the increase of the number of autophagosomes, AVOs and LC3 puncta, and mitigate the above changed oxidative stress and autophagy related mRNA and protein levels induced by Cu. In summary, our findings indicated that excessive Cu could induce oxidative stress and autophagy by activating the ROS/HO-1/NQO1 pathway, and inhibition of HO-1 might attenuate Cu-induced oxidative stress and autophagy in duck renal tubular epithelial cells.

Remediation of soil contaminated with high levels of hexavalent chromium by combined chemical-microbial reduction and stabilization

In order to solve the problem of re-oxidation after chemical remediation of soil contaminated with high levels of hexavalent chromium (Cr(VI)), we investigated the use of chemical reduction combined with microbial stabilization to remediate soils contaminated with high Cr(VI) concentration. The leaching toxicity and microbial diversity of Cr(VI)-contaminated soil and the leaching toxicity of remediated soil oxidized by potassium permanganate (KMnO₄) were measured. The results indicate that the conversion rate of Cr(VI) reached 97 %, and the concentration of Cr(VI) in toxic solutions leaching can be reduced by 95 % after 40 days of microbial stabilization. Sterilization experiments showed that the reduction of Cr(VI) by microorganisms is stable. The results of microbial diversity analysis indicate that bacterial community changed more than fungal community during the reduction process of Cr(VI), and the species abundance and species evenness of bacteria decreased. Bacillus spp. and Halomonas spp. were the dominant species in this study.

Copper Content and Resistance Mechanisms in the Terrestrial Moss Ptychostomum capillare: A Case Study in an Abandoned Copper Mine in Central Spain

We present a case study on the tissue absorption of copper of a widely distributed moss species, Ptychostomum capillare in the polluted soil of an abandoned copper mine in central Spain. We studied the soil properties in a copper soil pollution gradient and sampled the moss tufts growing on them in four plots with contrasted soil copper levels. We determined the copper content in the soil and in the moss tissues. On these moss samples, we also performed histochemical tests and X-ray dispersive spectrometry coupled with scanning electron microscopy (SEM-EDX), both in untreated shoots and in samples where surface waxes were removed. We checked the behavior of this species using a metallophillous moss, Scopelophila cataractae, for comparative purposes. Copper contents in P. capillare seem to depend more on available, rather than total soil copper contents. Our results indicate that this moss is able to concentrate 12-fold the available soil copper in soil with low available copper content, whereas in the most polluted soil the concentration of Cu in the moss was only half those levels. Both histochemical and SEM-EDX tests show no surface copper in the mosses from the least polluted plot, whereas in samples from the soil with highest copper content, the removal of surface waxes also reduces or removes copper from the moss shoots. Our observations point at a mixed strategy in P. capillare in this copper mine, with metal accumulation behavior in the lowest Cu plot, and an exclusion mechanism involving wax-like substances acting as a barrier in the most polluted plots. These distortions impede the estimation of environmental levels and thus compromise the value of this moss in biomonitoring. We highlight the need of extending these studies to other moss species, especially those used in biomonitoring programs.

Inoculation with abscisic acid (ABA)-catabolizing bacteria can improve phytoextraction of heavy metal in contaminated soil

Promotion of plant capacity for accumulation of heavy metals (HMs) is one of the key strategies in enhancing phytoremediation in contaminated soils. Here we report that, Rhodococcus qingshengii, an abscisic acid (ABA)-catabolizing bacteria, clearly boosts levels of Cd, Zn, and Ni in wild-type Arabidopsis by 47, 24, and 30%, respectively, but no increase in Cu was noted, when compared with non-inoculated Arabidopsis plants in contaminated growth substrate. Furthermore, when compared with wild-type plants, R.qingshengii-induced increases in Cd, Zn, and Ni concentrations were more pronounced in abi1/hab1/abi2 (ABA-sensitive mutant) strains of Arabidopsis, whereas little effect was observed in snrk2.2/2.3 (ABA insensitive mutant). This demonstrates that metabolizing ABA might be indispensable for R. qingshengii to improve metal accumulation in plants. Bacterial inoculation significantly elevated the expression of Cd, Zn, and Ni-related transporters; whereas the transcript levels of Cu transporters remained unchanged. This result may be a reasonable explanation for why the uptake of Cd, Zn, and Ni in plants was stimulated by bacterial inoculation, while no effect was observed on Cu levels. From our results, we clearly demonstrate that R. qingshengii can increase the accumulation of Cd, Zn, and Ni in plants via an ABA-mediated HM transporters-associated mechanism. Metabolizing ABA in the plants by ABA-catabolizing bacterial inoculation might be an alternative strategy to improve phytoremediation efficiency in HMs contaminated soil.

Diversity of endophytic plant-growth microorganisms from Gentianella weberbaueri and Valeriana pycnantha, highland Peruvian medicinal plants

Microbial diversity in Peruvian mountain areas is poorly know, specially endophytic microorganisms of medicinal native plants from the Cordillera Blanca. So, nine bacterial and six fungal species were isolated from Gentianella weberbaueri and Valeriana pycnantha. According to 16S rDNA analysis, bacterial strains belong to genera Rahnella, Pseudomonas, Serratia, Rouxiella, and Bacillus; while ITS analysis showed that fungi belong to Pyrenochaeta, Scleroconidioma, Cryptococcus, and Plenodomus genera. Rahnella sp. GT24B and P. trivialis VT20B solubilized tricalcium phosphate and produced siderophores at 10 and 24 °C. Five bacteria strains produced indol-3-acetic acid (IAA) at 10 and 24 °C, where Rahnella sp. VT19B showed more production at 10 °C than 24 °C. Rahnella sp. GT24B, Serratia sp. VT28B, and Rahnella sp. GT25B inhibited Fusarium oxysporum growth up to 100, 78 and 74 %, respectively. R. inusitata VT25B and B. licheniformis GT10B showed high cellulolytic and proteolytic activities. On the other hand, only a few fungi moderately inhibited growth of F. oxysporum, and produced siderophores and cellulases. Most of bacteria inoculated on Medicago sativa "alfalfa" and Triticum aestivum "wheat" seeds got better root development, especially Rahnella sp. GT24B, Rouxiella sp.VT24B, Serratia sp. VT28B, and Rahnella sp. VT34B. Finally, this study is the first report of endophytic microorganisms associated to wild medicinal high-mountain Peruvian plants and it show a valuable microbial diversity and its possible role in promoting growth of crops and wild medicinal plants.

Bioremediation of copper by active cells of Pseudomonas stutzeri LA3 isolated from an abandoned copper mine soil

Copper bioremoval efficiency and bioaccumulation capacity of Pseudomonas stutzeri LA3 isolated from copper contaminated soil were investigated. P. stutzeri LA3 removed about 50% of Cu (II) at 50 mg l^-1 of concentration and accumulated a maximum of 1.62 mg of Cu g^-1 biomass dry weight. Bioremediation by P. stutzeri LA3 partially depended on the production of extracellular polymeric substances, composed of proteins and carbohydrates. Cell surface alterations were observed on the Cu (II) treated biomass through a scanning electron microscope (SEM). Energy dispersive spectrometer (EDX) investigation of Cu (II) treated biomass showed clear signals of Cu, confirming the presence of copper ions on the cell surface. Fourier transform infrared spectroscopy (FTIR) showed the contribution of functional groups such as hydroxyl (-OH), carboxyl (-COOH), amide and amine (-NH₂) in the remediation process. Based on the results, the isolated strain P. stutzeri LA3 could serve as a potential candidate for copper due to its significant copper removal effeciency.

Copper phytoavailability in vineyard topsoils as affected by pyoverdine supply

Pyoverdine (Pvd) is a bacterial siderophore produced by some Pseudomonads species that can bind copper in addition to iron in soil. Pvd is expected to alter the dynamics and the ecotoxicity of Cu in vineyard soils. This study investigated the extent to which the mobility and the phytoavailability of Cu varied among vineyard soils with different pH and how they were affected by a supply of Pvd. Pvd was supplied (or not) to ten vineyard topsoils with pH ranging from 5.9 to 8.6 before metal was extracted with 0.005 M CaCl₂. Cu mobility was assessed through its total concentration and Cu phytoavailability through its free ionic concentration measured in the CaCl₂ extract. Cu mobility varied by a factor of six and Cu phytoavailability by a factor of 5000 among the soil samples. In the CaCl₂ extract, the concentration of Cu²⁺ was not correlated with the concentration of total Cu but was correlated with pH. This revealed that Cu phytoavailability depends to a great extent on Cu complexation in soil pore water, the latter being highly sensitive to pH. Adding Pvd enhanced the mobility of Cu in the soils including in carbonate soils. The Pvd-mobilization factor for Cu varied from 1.4 to 8 among soils, linked to the availability of Fe and Al in the solid phase and to Pvd partitioning between the solid and the liquid phase. Adding Pvd reduced the concentration of Cu²⁺ in CaCl₂ extract, which challenges the idea of using Pvd-producing bacteria to promote Cu phytoextraction.

The complex global response to copper in the multicellular bacterium Myxococcus xanthus

The complex copper response of the multicellular proteobacterium M. xanthus includes structural genes similar to those described in other bacteria, such as P1B-type ATPases, multicopper oxidases, and heavy metal efflux systems. However, the two time-dependent expression profiles of the different copper systems are unique. There are a number of genes responsible for an immediate response, whose expression increases after the addition of copper, but rapidly decreases thereafter to basal levels. The regulatory element that controls this early response is CorE, a novel extracytoplasmic function σ factor that is activated by Cu2+ and inactivated by Cu+. Other genes are part of a maintenance response. These genes show a profile that slows up after the copper addition and reaches a plateau at 24-48 h incubation. Most of the genes involved in this response are encoded by the operon curA, which is regulated by the two-component system CorSR. Moreover, other genes involved in the maintenance response are regulated by different regulatory elements that remain unknown. Additionally, copper activates the transcription of the structural genes for carotenoid synthesis through a mechanism that requires the activation of the σ factor CarQ. Bearing in mind that M. xanthus is not very resistant to copper, it is speculated that the complexity of its copper response might be related to its complex life cycle.

Copper tolerance and antibiotic resistance in soil bacteria from olive tree agricultural fields routinely treated with copper compounds

BACKGROUND

Heavy metal pollution may act as persistent selective pressure that favors the spread of antimicrobial resistance in natural environments. The aim of this study was to isolate and identify metal-tolerant bacteria from soils in olive tree fields routinely treated with copper-derived compounds and to evaluate the tolerance of bacterial strains to other metals and their resistance to clinically relevant antibiotics.

RESULTS

Five hundred and ninety-five bacterial isolates from 45 olive tree agricultural fields were studied. Minimum inhibitory concentrations (MICs) ≥ 16 mmol L^-1 were detected for copper (57% of isolates), zinc (37%) and lead (62%), while only 3% had MICs ≥ 12 mmol L^-1 for nickel. Ninety-six metal-tolerant strains were selected for identification and antibiotic resistance determination. Most isolates belonged to the genera Pseudomonas (37%), Bacillus (23%) and Chryseobacterium (20%), while 6% were identified as Variovorax, 4% as Stenotrophomonas and 2% as Serratia or Burkholderia. Highest copper tolerance was detected among Pseudomonas. Over 75% of the strains with high copper tolerance were also resistant to vancomycin, 50% to ampicillin and 40% to erythromycin or trimethoprim/sulfamethoxazole.

CONCLUSION

Bacteria from olive soils are tolerant to metals, mainly copper, but also zinc and lead, as well as resistant to clinically important antibiotics, which could be a troublesome issue in clinical settings. © 2019 Society of Chemical Industry.

Bacterial Isolate Inhabiting Spitsbergen Soil Modifies the Physiological Response of Phaseolus coccineus in Control Conditions and under Exogenous Application of Methyl Jasmonate and Copper Excess

The aim of the study was to demonstrate the potential of the promotion and regulation of plant physiology and growth under control and copper stress conditions, and the impact of the exogenous application of methyl jasmonate on this potential. Runner bean plants were treated with methyl jasmonate (1 or 10 µM) (J; J1 or J10) and Cu (50 µM), and inoculated with a bacterial isolate (S17) originating from Spitsbergen soil, and identified as Pseudomonas luteola using the analytical profile index (API) test. Above- and under-ground plant parts were analyzed. The growth parameters; the concentration of the photosynthetic pigments, elements, flavonoids (FLAVO), phenolics (TPC), allantoin (ALLA), and low molecular weight organic acids (LMWOAs); the activity of antioxidant enzymes and enzymes of resistance induction pathways (e.g., superoxide dismutase (SOD), catalase (CAT), ascorbate (APX) and guaiacol (GPX) peroxidase, glucanase (GLU), and phenylalanine (PAL) and tyrosine ammonia-lyase (TAL)), and the antioxidant capacity (AC) were studied. The leaves exhibited substantially higher ALLA and LMWOA concentrations as well as PAL and TAL activities, whereas the roots mostly had higher activities for a majority of the enzymes tested (i.e., SOD, CAT, APX, GPX, and GLU). The inoculation with S17 mitigated the effect of the Cu stress. Under the Cu stress and in the presence of J10, isolate S17 caused an elevation of the shoot fresh weight, K concentration, and TAL activity in the leaves, and APX and GPX (also at J1) activities in the roots. In the absence of Cu, isolate S17 increased the root length and the shoot-to-root ratio, but without statistical significance. In these conditions, S17 contributed to a 236% and 34% enhancement of P and Mn, respectively, in the roots, and a 19% rise of N in the leaves. Under the Cu stress, S17 caused a significant increase in FLAVO and TPC in the leaves. Similarly, the levels of FLAVO, TPC, and AC were enhanced after inoculation with Cu and J1. Regardless of the presence of J, inoculation at Cu excess caused a reduction of SOD and CAT activities, and an elevation of GPX. The effects of inoculation were associated with the application of Cu and J, which modified plant response mainly in a concentration-dependent manner (e.g., PAL, TAL, and LMWOA levels). The conducted studies demonstrated the potential for isolate S17 in the promotion of plant growth.

Occurrence, fate, and transport of potentially toxic metals (PTMs) in an alkaline rhizosphere soil-plant (Maize, Zea mays L.) system: the role of Bacillus subtilis

Utilization of microbes is one of the most promising methods to remediate potentially toxic metals (PTMs) from soil. In this study, a systematic investigation was conducted to study the influence of Bacillus subtilis on PTMs occurrence, fractionation, translocation, and accumulation in the rhizosphere soil of Maize (Zea mays L.) in pot experiments. B. subtilis showed strong effects on the fate and mobility of Pb, Sb, Ni, Zn, Cu, and Cr, and it also affected PTMs' distribution in the rhizosphere soil, maize growth, and microbial community structure. Results showed that it was easier for Zn to accumulate in maize roots than other PTMs. According to chemical fractionation, B. subtilis tended to immobilize Pb, Sb, Ni, Zn, and Cu in the rhizosphere soil. Compared with other PTMs, Cr tended to be more available and more mobile, which indicated a higher health risk to the eco-environment. These findings suggested that B. subtilis could be used as a geomicrobiological stabilizer to immobilize PTMs (Pb, Sb, Ni, Cu, Zn) in alkaline soils and decrease their uptake by plants, thus reducing the risks of a potential transfer into the food chain.

Design of Antibacterial Agents: Alkyl Dihydroxybenzoates against Xanthomonas citri subsp. citri

Xanthomonas citri subsp. citri (Xcc) causes citrus canker, affecting sweet orange-producing areas around the world. The current chemical treatment available for this disease is based on cupric compounds. For this reason, the objective of this study was to design antibacterial agents. In order to do this, we analyzed the anti-Xcc activity of 36 alkyl dihydroxybenzoates and we found 14 active compounds. Among them, three esters with the lowest minimum inhibitory concentration values were selected; compounds 4 (52 μM), 16 (80 μM) and 28 (88 μM). Our study demonstrated that alkyl dihydroxybenzoates cause a delay in the exponential phase. The permeability capacity of alkyl dihydroxybenzoates in a quarter of MIC was compared to nisin (positive control). Compound 28 was the most effective (93.8), compared to compound 16 (41.3) and compound 4 (13.9) by percentage values. Finally, all three compounds showed inhibition of FtsZ GTPase activity, and promoted changes in protofilaments, leading to depolymerization, which prevents bacterial cell division. In conclusion, heptyl dihydroxybenzoates (compounds 4, 16 and 28) are promising anti-Xcc agents which may serve as an alternative for the control of citrus canker.

Isolation and identification of Penicillium chrysogenum strain Y5 and its copper extraction characterization from waste printed circuit boards

Biohydrometallurgy is generally considered as a green technology for the recycling of industrial solid waste. In this study, an indigenous fungal strain named Y5 with the ability of high-yielding organic acids was isolated and applied in bioleaching of waste printed circuit boards (PCBs). The strain Y5 was identified as Penicillium chrysogenum by morphological and molecular identification. Meanwhile, we investigated that an optimal set of culturing conditions for the fungal growth and acids secretion was 15 g/L glucose with initial pH 5.0, temperature 25°C and shaking speed 120 rpm in shaken flasks culture. Moreover, three bioleaching processes such as one-step, two-step and spent medium processes were conducted to extract copper from waste PCBs. Spent medium bioleaching showed higher copper extraction percentage and it was 47% under 5%(w/v) pulp density. Transmission electron microscope (TEM) observation combining with energy dispersive analysis of X-rays (EDAX) showed that the leached metal ions did not obviously damage the hypha cells. All above results indicated that P.chrysogenum strain Y5 has the tolerance to metal ions, suggesting its potential in recycling of metals from waste PCBs in industry.

Antibacterial activity of monoacetylated alkyl gallates against Xanthomonas citri subsp. citri

Asiatic citrus canker (ACC) is an incurable disease of citrus plants caused by the Gram-negative bacterium Xanthomonas citri subsp. citri (X. citri). It affects all the commercially important citrus varieties in the major orange producing areas around the world. Control of the pathogen requires recurrent sprays of copper formulations that accumulate in soil and water reservoirs. Here, we describe the improvement of the alkyl gallates, which are potent anti-X. citri compounds, intended to be used as alternatives to copper in the control of ACC. Acetylation of alkyl gallates increased their lipophilicity, which resulted in potentiation of the antibacterial activity. X. citri exposed to the acetylated compounds exhibited increased cell length that is consistent with the disruption of the cell division apparatus. Finally, we show that inhibition of cell division is an indirect effect that seemed to be caused by membrane permeabilization, which is apparently the primary target of the acetylated alkyl gallates.

Pioneering particle-based strategy for isolating viable bacteria from multipart soil samples compatible with Raman spectroscopy

The study of edaphic bacteria is of great interest, particularly for evaluating soil remediation and recultivation methods. Therefore, a fast and simple strategy to isolate various bacteria from complex soil samples using poly(ethyleneimine) (PEI)-modified polyethylene particles is introduced. The research focuses on the binding behavior under different conditions, such as the composition, pH value, and ionic strength, of the binding buffer, and is supported by the characterization of the surface properties of particles and bacteria. The results demonstrate that electrostatic forces and hydrophobicity are responsible for the adhesion of target bacteria to the particles. Distinct advantages of the particle-based isolation strategy include simple handling, enrichment efficiency, and the preservation of viable bacteria. The presented isolation method allows a subsequent identification of the bacteria using Raman microspectroscopy in combination with chemometrical methods. This is demonstrated with a dataset of five different bacteria (Escherichia coli, Bacillus subtilis, Pseudomonas fluorescens, Streptomyces tendae, and Streptomyces acidiscabies) which were isolated from spiked soil samples. In total 92% of the Raman spectra could be identified correctly.

Impact of intracellular metallothionein on metal biouptake and partitioning dynamics at bacterial interfaces

This study reports the quantitative evaluation of the metal biopartitioning dynamics following biouptake at bacterial interfaces with explicit account of the effects stemming from intracellular metal binding by metallothionein proteins.